BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033006
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
++ D D + +A+E + ++ID+ ASWC C ++ P + A +F
Sbjct: 20 HNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKF 65
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D +Q +L+ +P+L+D+ A+WC C + P LE +AAE+ K
Sbjct: 13 DSFEQDVLKND---KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK 55
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 87 DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D L + +E +PI++D+ A+WC C + P E L+ ++ K
Sbjct: 14 DAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK 56
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 92 RAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE 125
R P+++D+ A WC C L P+LEK+ A+
Sbjct: 26 RVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAK 59
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
+E +ND D ++L E S P+L+D+ A WC C + P ++++A E+ K
Sbjct: 1 MEAGAVND-DTFKNVVL---ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK 51
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
E++ +NDS + +L E P+++D+ A WC C + P +++LA E+ K
Sbjct: 1 EVQDVNDSSWKEFVL----ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK 50
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 97 SQPILIDWMASWCRKCIYLKPKLEKLAAE 125
++P+L+D+ A+WC C + P LE++A E
Sbjct: 25 NKPVLVDFWATWCGPCKMVAPVLEEIATE 53
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 97 SQPILIDWMASWCRKCIYLKPKLEKLAAE 125
++P+L+D+ A+WC C + P LE++A E
Sbjct: 30 NKPVLVDFWATWCGPCKMVAPVLEEIATE 58
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
E +P ++D+ A WC C + P L++LA E+D +
Sbjct: 36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ 70
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
++DS DQ +L+A L +L+D+ A WC C + P L ++ EF K
Sbjct: 7 VSDS-SFDQDVLKASGL---VLVDFWAEWCGPCKMIGPALGEIGKEFAGK 52
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127
++ +Q +L++ +P+L+D+ A WC C + P +E+LA E++
Sbjct: 9 ENFEQEVLKS---DKPVLVDFWAPWCGPCRMIAPIIEELAKEYE 49
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
L+D+ A+WC C + P LE+LAA+++ K
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGK 52
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
L+D+ A+WC C + P LE+LAA+++ K
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGK 51
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
L+D+ A+WC C + P LE+LAA+++ K
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGK 52
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127
L ++DSD L ++ PI+I + SWC+ C +KP E++A++ +
Sbjct: 1 LRSLSDSD----FQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQME 47
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
+NDS + +L E P+++D+ A WC C + P +++LA E+ K
Sbjct: 4 VNDSSWKEFVL----ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK 49
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 87 DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D L + +E +PI++ + A+WC C + P E L+ ++ K
Sbjct: 14 DAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLFETLSNDYAGK 56
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEF 126
+P+++D WC C + PK EKLA E+
Sbjct: 38 KPVVLDMFTQWCGPCKAMAPKYEKLAEEY 66
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEF 126
+P+++D WC C + PK EKLA E+
Sbjct: 26 KPVVLDMFTQWCGPCKAMAPKYEKLAEEY 54
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 30 SGSSSCLLLQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPINDSDHLDQI 89
SG + +L+K A + + ++ + + VR E PD + P V L + ++ D++
Sbjct: 88 SGYPTIKILKKGQAVDYEGSRTQEEIVAK-VR-EVSQPDWTPPPEVTL--VLTKENFDEV 143
Query: 90 LLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
+ A IL+++ A WC C L P+ EK A E
Sbjct: 144 VNDADI----ILVEFYAPWCGHCKKLAPEYEKAAKEL 176
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLA 123
+L+++ A WC C P+ EK+A
Sbjct: 35 VLLEFYAPWCGHCKQFAPEYEKIA 58
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P LE++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILEEIADEYQGK 52
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
+ D LD L +A + +++D+ A+WC C + PKL +L+ +F
Sbjct: 10 VKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQF 54
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
+ D LD L +A + +++D+ A+WC C + PKL +L+ +F
Sbjct: 5 VKDKADLDGQLTKAS--GKLVVLDFFATWCGPCKMISPKLVELSTQF 49
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 20 DSFDTDVLKA---DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK 62
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
+L+D+ A WC C + P LE++A E++ K
Sbjct: 22 VLVDFWAEWCAPCRXIAPILEEIAKEYEGK 51
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
+L+D+ A WC C + P LE++A E++ K
Sbjct: 21 VLVDFWAEWCAPCRXIAPILEEIAKEYEGK 50
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
+P ++D+ A WC C + P LE+L+ E+ K
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGK 83
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
+P ++D+ A WC C + P LE+L+ E+ K
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYAGK 83
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGHCKMIAPILDEIADEYQGK 52
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAE 125
I++D+ A WC C + PK+E LA E
Sbjct: 22 IVVDFFAQWCGPCRNIAPKVEALAKE 47
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 11 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 53
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIAEEYQGK 52
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 92 RAQELSQPILIDWMASWCRKCIYLKPKLEKLA 123
+A + +P+L+D+ A+WC C + P LE+ A
Sbjct: 12 QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFA 43
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 92 RAQELSQPILIDWMASWCRKCIYLKPKLEKLA 123
+A + +P+L+D+ A+WC C + P LE+ A
Sbjct: 12 QAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFA 43
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C + P +EK A ++
Sbjct: 29 VVVDFFATWCGPCKMIAPMIEKFAEQY 55
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 99 PILIDWMASWCRKCIYLKPKLEKLA 123
P+L+D+ A+WC C + P LE+ A
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFA 43
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C + P +EK A ++
Sbjct: 22 VVVDFFATWCGPCKMIAPMIEKFAEQY 48
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D L++A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDLVKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCEMIAPILDEIADEYQGK 52
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 32.3 bits (72), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 89 ILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
IL RA+ P+L+D+ A WC C + P+ + AA
Sbjct: 56 ILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATL 93
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.3 bits (72), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.3 bits (72), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 99 PILIDWMASWCRKCIYLKPKLEKLA 123
P+L+D+ A+WC C + P LE+ A
Sbjct: 19 PVLVDFWAAWCGPCRMMAPVLEEFA 43
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.0 bits (71), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
E++ +NDS + +L E P+++D+ A WC + P +++LA E+ K
Sbjct: 1 EVQDVNDSSWKEFVL----ESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGK 50
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 32.0 bits (71), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
D+ D ++ A IL+++ A WC C L P+ EK A E
Sbjct: 15 DNFDDVVNNADI----ILVEFYAPWCGHCKKLAPEYEKAAKEL 53
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+ +A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDDIADEYQGK 52
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLA 123
++ID+ A+WC C + PKLE+L+
Sbjct: 23 VVIDFYATWCGPCKMIAPKLEELS 46
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 86 LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
D + ++ + ++ID+ ASWC C + P + A +F
Sbjct: 17 FDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKF 57
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
++ +LI++ A WC C L PK E+L A +
Sbjct: 25 TKDVLIEFYAPWCGHCKALAPKYEELGALY 54
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 97 SQPILIDWMASWCRKCIYLKPKLEKLAAE 125
++P+L+D+ A+WC + P LE++A E
Sbjct: 27 NKPVLVDFWATWCGPSKMVAPVLEEIATE 55
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
IL+D+ A WC C + P L+++A E+ K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
IL+D+ A WC C + P L+++A E+ K
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A ++ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKMIAPILDEIADDYQGK 52
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
IN+S+ L Q+L Q ++ P+L + + + C+ L P LE LAA+++ +
Sbjct: 12 INESN-LQQVL--EQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ 58
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
L+D+ A+WC + P LE+LAA+++ K
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGK 52
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKC------IYLKPKLEKLAAE 125
T + I D L+Q L+ A+ +P+++D A WC C + P+++K A+
Sbjct: 9 THLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD 65
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKC------IYLKPKLEKLAAE 125
T + I D L+Q L+ A+ +P+++D A WC C + P+++K A+
Sbjct: 6 THLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD 62
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCVWCKMIAPILDEIADEYQGK 52
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 86 LDQILLRAQELSQPILIDW-MASWCRKCIYLKPKLEKLAAEF 126
+D ++ + ++I W MA+WC C+Y+ L++L ++
Sbjct: 25 IDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKY 66
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C + P +EK + ++
Sbjct: 21 VVVDFYATWCGPCKMIAPMIEKFSEQY 47
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C + P +EK + ++
Sbjct: 27 VVVDFYATWCGPCKMIAPMIEKFSEQY 53
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA 123
+++ D+I+ ++ +LI++ A WC C L+PK ++L
Sbjct: 34 AENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKYKELG 71
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWC-RKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC R C + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGRPCKMIAPILDEIADEYQGK 53
>pdb|1WA4|A Chain A, Crystal Structure Of The M131f L135a Evad Double Mutant
Length = 205
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 38 LQKNSAFFWVDTASRSKSARRDVRVEALWPDLSRPTSVELEPI-NDSDHLDQILLRAQEL 96
L+ ++ F ++ ASRS + ++ + AL P L P + +EPI +D D + L AQ
Sbjct: 125 LEDDTVFSYM--ASRSYVTQDELALSALDPALGLPIDIGVEPIVSDRDRVAITLAEAQR- 181
Query: 97 SQPILIDWMAS 107
Q +L D+ S
Sbjct: 182 -QGLLPDYTTS 191
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 101 LIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
L+D+ A+ C C + P LE+LAA+++ K
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGK 51
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAAEF 126
+P+++D WC + PK EKLA E+
Sbjct: 25 KPVVLDMFTQWCGPSKAMAPKYEKLAEEY 53
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
++ID+ ASWC C + P LA +F
Sbjct: 37 VVIDFTASWCGPCRIMAPVFADLAKKF 63
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 73 TSVELEPINDSDHLDQILLRAQELSQPILIDWMASWC------RKCIYLKPKLEKLAAE 125
T + I D L+Q L+ A+ +P+++D A WC K + P+++K A+
Sbjct: 9 THLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVASKEFEKYTFSDPQVQKALAD 65
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 93 AQELSQ-PI-LIDWMASWCRKCIYLKPKLEKLA 123
AQE++ P+ L+D+ A WC C + P LE+LA
Sbjct: 44 AQEVAGAPLTLVDFFAPWCGPCRLVSPILEELA 76
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLA 123
++ID+ A+WC C + P EK++
Sbjct: 36 VVIDFWATWCGPCKMIGPVFEKIS 59
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
++ID+ A+WC C ++P L KL +
Sbjct: 33 LVIDFYATWCGPCKMMQPHLTKLIQAY 59
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC + P L+++A E+ K
Sbjct: 30 DSFDTDVLKAD---GAILVDFWAEWCGPAKMIAPILDEIADEYQGK 72
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC C + L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPCKLIASILDEIADEYQGK 52
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCGPSKMIAPILDEIADEYQGK 52
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC + P +EK A ++
Sbjct: 30 VVVDFFATWCGPSKMIAPMIEKFAEQY 56
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC + P +EK A ++
Sbjct: 22 VVVDFFATWCGPSKMIAPMIEKFAEQY 48
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
++ +LI++ A WC C L+PK ++L +
Sbjct: 370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKL 399
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAA 124
+L+++ A WC C P+ EK+A+
Sbjct: 37 VLLEFYAPWCGHCKQFAPEYEKIAS 61
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C +KP L+ ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C +KP L+ ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129
D D +L+A IL+D+ A WC + P L+++A E+ K
Sbjct: 10 DSFDTDVLKAD---GAILVDFWAEWCACAKMIAPILDEIADEYQGK 52
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C +KP L+ ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 89 ILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA 123
+L R +E +L+D+ A+WC C L L +A
Sbjct: 15 LLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIA 49
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C +KP L+ ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C +KP L+ ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C +KP L+ ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126
IN+S+ L Q L Q + P+L + + + C+ L P LE LAA++
Sbjct: 12 INESN-LQQTL--EQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQY 55
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C +KP L+ ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C +KP L+ ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC C +KP L+ ++
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHSLSEKY 49
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 98 QPILIDWMASWCRKCIYLKPKLEKLAA 124
QP+L+ + ASWC C + P L LAA
Sbjct: 26 QPVLVYFWASWCGPCQLMSP-LINLAA 51
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 99 PILIDWMASWCRKCIYLKPKLEKLAAE 125
P +ID+ A WC C P + AAE
Sbjct: 57 PXVIDFWAPWCGPCRSFAPIFAETAAE 83
>pdb|1OFN|A Chain A, Purification, Crystallisation And Preliminary Structural
Studies Of Dtdp-4-Keto-6-Deoxy-Glucose-5-Epimerase
(Evad) From Amycolatopsis Orientalis; The Fourth Enzyme
In The Dtdp-L-Epivancosamine Biosynthetic Pathway.
pdb|1OFN|B Chain B, Purification, Crystallisation And Preliminary Structural
Studies Of Dtdp-4-Keto-6-Deoxy-Glucose-5-Epimerase
(Evad) From Amycolatopsis Orientalis; The Fourth Enzyme
In The Dtdp-L-Epivancosamine Biosynthetic Pathway.
pdb|1OI6|A Chain A, Structure Determination Of The Tmp-Complex Of Evad
pdb|1OI6|B Chain B, Structure Determination Of The Tmp-Complex Of Evad
Length = 205
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 51 SRSKSARRDVRVEALWPDLSRPTSVELEPI-NDSDHLDQILLRAQELSQPILIDWMAS 107
SRS + ++ + AL P L P + +EPI +D D + L AQ Q +L D+ S
Sbjct: 136 SRSYVTQDELALSALDPALGLPIDIGVEPIVSDRDRVAITLAEAQR--QGLLPDYTTS 191
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAE 125
+S+P +I + ASWC C P L ++A E
Sbjct: 29 VSKPAVIVFWASWCTVCKAEFPGLHRVAEE 58
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126
+++D+ A+WC + P +EK + ++
Sbjct: 27 VVVDFYATWCGPSKMIAPMIEKFSEQY 53
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 96 LSQPIL-IDWM-ASWCRKCIYLKPKLEKLAAEFDT 128
+S+ IL + W A WC C ++ +EK+A EF T
Sbjct: 34 MSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.129 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,460,277
Number of Sequences: 62578
Number of extensions: 115946
Number of successful extensions: 340
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 108
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)