Query 033006
Match_columns 129
No_of_seqs 195 out of 1340
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.4 1.3E-13 2.9E-18 100.0 5.5 50 77-129 44-93 (150)
2 KOG0907 Thioredoxin [Posttrans 99.4 1.4E-13 3.1E-18 94.9 5.2 49 80-128 4-52 (106)
3 cd02948 TRX_NDPK TRX domain, T 99.4 7.5E-13 1.6E-17 89.5 6.2 46 79-128 3-48 (102)
4 PHA02278 thioredoxin-like prot 99.4 6.6E-13 1.4E-17 90.9 5.9 43 81-127 2-44 (103)
5 cd02954 DIM1 Dim1 family; Dim1 99.4 6.6E-13 1.4E-17 92.7 5.9 45 83-129 2-46 (114)
6 cd02985 TRX_CDSP32 TRX family, 99.4 9.5E-13 2.1E-17 89.2 6.1 44 82-127 2-45 (103)
7 PLN00410 U5 snRNP protein, DIM 99.3 1.4E-12 3.1E-17 94.2 5.6 50 77-128 5-54 (142)
8 cd02986 DLP Dim1 family, Dim1- 99.3 1E-11 2.3E-16 86.7 5.9 44 83-128 2-45 (114)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.3 2.1E-11 4.5E-16 84.8 7.0 51 76-128 10-60 (113)
10 cd02999 PDI_a_ERp44_like PDIa 99.3 1.2E-11 2.7E-16 83.7 5.7 34 95-128 16-49 (100)
11 cd03004 PDI_a_ERdj5_C PDIa fam 99.2 2.3E-11 5E-16 81.6 6.0 47 78-128 4-50 (104)
12 cd03003 PDI_a_ERdj5_N PDIa fam 99.2 2.1E-11 4.4E-16 81.7 5.7 47 77-128 3-49 (101)
13 COG3118 Thioredoxin domain-con 99.2 1.9E-11 4E-16 97.3 5.7 51 77-129 25-75 (304)
14 cd02989 Phd_like_TxnDC9 Phosdu 99.2 4.6E-11 1E-15 82.6 6.5 49 76-128 5-53 (113)
15 cd02957 Phd_like Phosducin (Ph 99.2 4.6E-11 1E-15 82.1 5.8 51 76-128 5-55 (113)
16 cd02962 TMX2 TMX2 family; comp 99.2 7.4E-11 1.6E-15 86.0 7.1 51 75-128 28-78 (152)
17 cd02956 ybbN ybbN protein fami 99.2 4.2E-11 9.2E-16 79.1 5.3 42 85-128 2-43 (96)
18 PTZ00051 thioredoxin; Provisio 99.2 7.2E-11 1.6E-15 78.2 6.3 48 77-128 2-49 (98)
19 KOG0908 Thioredoxin-like prote 99.2 2.9E-11 6.3E-16 94.3 4.9 51 76-128 2-52 (288)
20 cd03002 PDI_a_MPD1_like PDI fa 99.2 5.6E-11 1.2E-15 80.0 5.5 47 78-128 3-49 (109)
21 PRK09381 trxA thioredoxin; Pro 99.2 1E-10 2.2E-15 79.2 6.4 49 76-128 4-52 (109)
22 cd02993 PDI_a_APS_reductase PD 99.1 1.3E-10 2.8E-15 79.2 6.4 50 77-128 3-52 (109)
23 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 1.5E-10 3.3E-15 76.8 6.2 48 77-128 2-49 (104)
24 cd02950 TxlA TRX-like protein 99.1 8.5E-11 1.8E-15 84.4 5.2 41 84-128 11-51 (142)
25 cd02996 PDI_a_ERp44 PDIa famil 99.1 1.4E-10 3E-15 78.6 6.0 46 77-127 3-48 (108)
26 cd02992 PDI_a_QSOX PDIa family 99.1 1.6E-10 3.4E-15 79.9 6.1 48 77-128 3-50 (114)
27 cd03008 TryX_like_RdCVF Trypar 99.1 9.2E-11 2E-15 85.1 4.1 33 96-128 24-56 (146)
28 cd02963 TRX_DnaJ TRX domain, D 99.1 1.5E-10 3.3E-15 79.4 5.0 45 82-128 10-55 (111)
29 PF00085 Thioredoxin: Thioredo 99.1 2.2E-10 4.7E-15 75.6 5.3 45 81-128 4-48 (103)
30 cd02994 PDI_a_TMX PDIa family, 99.1 3E-10 6.5E-15 75.8 6.0 45 77-128 3-47 (101)
31 cd02987 Phd_like_Phd Phosducin 99.1 2.8E-10 6.1E-15 84.5 6.3 53 75-128 62-114 (175)
32 cd03000 PDI_a_TMX3 PDIa family 99.1 1.6E-10 3.6E-15 77.9 4.3 40 83-127 6-45 (104)
33 cd02952 TRP14_like Human TRX-r 99.1 3E-10 6.4E-15 79.9 5.6 48 79-128 5-59 (119)
34 cd03001 PDI_a_P5 PDIa family, 99.1 5.5E-10 1.2E-14 74.2 6.5 48 77-128 2-49 (103)
35 cd03005 PDI_a_ERp46 PDIa famil 99.1 3.2E-10 6.9E-15 75.2 5.3 45 78-128 3-47 (102)
36 cd02959 ERp19 Endoplasmic reti 99.0 3.8E-10 8.3E-15 78.6 5.4 42 85-126 7-48 (117)
37 PRK15412 thiol:disulfide inter 99.0 5.9E-10 1.3E-14 82.9 6.5 57 59-124 38-95 (185)
38 cd02984 TRX_PICOT TRX domain, 99.0 7.1E-10 1.5E-14 73.1 6.0 43 82-126 1-43 (97)
39 PRK10996 thioredoxin 2; Provis 99.0 1.9E-09 4.1E-14 77.0 8.1 43 82-128 41-83 (139)
40 cd02997 PDI_a_PDIR PDIa family 99.0 9.2E-10 2E-14 73.1 5.9 46 77-127 2-47 (104)
41 TIGR00385 dsbE periplasmic pro 99.0 1.2E-09 2.5E-14 80.3 6.4 62 55-125 29-91 (173)
42 PLN02919 haloacid dehalogenase 99.0 3.2E-10 7E-15 103.2 3.4 64 57-129 388-452 (1057)
43 KOG0190 Protein disulfide isom 99.0 1E-09 2.2E-14 92.7 5.7 48 77-128 368-415 (493)
44 PTZ00056 glutathione peroxidas 99.0 9E-10 2E-14 83.2 4.8 58 61-129 14-71 (199)
45 PTZ00443 Thioredoxin domain-co 99.0 1.8E-09 3.8E-14 83.4 6.5 52 76-128 31-83 (224)
46 cd02953 DsbDgamma DsbD gamma f 98.9 1.6E-09 3.4E-14 72.8 4.9 41 84-128 2-45 (104)
47 cd02967 mauD Methylamine utili 98.9 1.1E-09 2.4E-14 74.2 4.2 33 96-128 20-52 (114)
48 PF08534 Redoxin: Redoxin; In 98.9 1.1E-09 2.3E-14 77.5 4.1 58 62-129 2-61 (146)
49 cd02988 Phd_like_VIAF Phosduci 98.9 2E-09 4.3E-14 81.2 5.9 52 75-128 82-133 (192)
50 cd03010 TlpA_like_DsbE TlpA-li 98.9 2.2E-09 4.8E-14 74.3 5.6 31 96-126 24-54 (127)
51 PLN02399 phospholipid hydroper 98.9 1.7E-09 3.8E-14 84.0 5.5 60 59-129 72-131 (236)
52 TIGR00424 APS_reduc 5'-adenyly 98.9 2.6E-09 5.7E-14 90.0 7.0 51 76-128 352-402 (463)
53 cd02998 PDI_a_ERp38 PDIa famil 98.9 1.9E-09 4.2E-14 71.4 4.9 46 78-127 3-48 (105)
54 TIGR02738 TrbB type-F conjugat 98.9 1.4E-09 2.9E-14 79.4 4.4 32 96-127 49-80 (153)
55 PRK14018 trifunctional thiored 98.9 2.3E-09 5.1E-14 91.4 5.8 55 60-127 32-86 (521)
56 TIGR01068 thioredoxin thioredo 98.9 4.3E-09 9.4E-14 69.0 5.8 43 83-128 3-45 (101)
57 cd02964 TryX_like_family Trypa 98.9 1.9E-09 4.2E-14 75.6 4.2 33 96-128 16-48 (132)
58 cd02965 HyaE HyaE family; HyaE 98.9 2.4E-09 5.3E-14 74.4 4.6 44 82-129 16-61 (111)
59 TIGR01126 pdi_dom protein disu 98.9 4.2E-09 9.2E-14 69.4 5.3 42 83-128 3-44 (102)
60 PF13905 Thioredoxin_8: Thiore 98.9 3.4E-09 7.5E-14 69.8 4.6 31 97-127 1-31 (95)
61 cd03065 PDI_b_Calsequestrin_N 98.9 5.9E-09 1.3E-13 73.3 5.8 47 76-126 10-60 (120)
62 TIGR01295 PedC_BrcD bacterioci 98.8 7.4E-09 1.6E-13 72.7 6.2 42 82-127 12-53 (122)
63 TIGR02661 MauD methylamine deh 98.8 5.8E-09 1.3E-13 77.9 5.6 60 59-127 45-104 (189)
64 cd02949 TRX_NTR TRX domain, no 98.8 7.7E-09 1.7E-13 68.9 5.6 40 86-128 5-44 (97)
65 cd03009 TryX_like_TryX_NRX Try 98.8 4.4E-09 9.5E-14 73.3 4.1 33 96-128 17-49 (131)
66 cd00340 GSH_Peroxidase Glutath 98.8 4.5E-09 9.7E-14 75.5 4.3 32 96-128 21-52 (152)
67 PLN02309 5'-adenylylsulfate re 98.8 9.1E-09 2E-13 86.6 6.3 51 76-128 346-396 (457)
68 cd02951 SoxW SoxW family; SoxW 98.8 7.5E-09 1.6E-13 71.7 4.9 32 95-126 11-46 (125)
69 PTZ00062 glutaredoxin; Provisi 98.8 1.1E-08 2.4E-13 78.0 5.6 45 81-128 4-48 (204)
70 PTZ00102 disulphide isomerase; 98.8 1.6E-08 3.4E-13 83.9 6.7 48 77-128 359-406 (477)
71 cd03012 TlpA_like_DipZ_like Tl 98.8 9E-09 1.9E-13 71.5 4.2 33 96-128 22-54 (126)
72 PRK00293 dipZ thiol:disulfide 98.7 2.7E-08 5.8E-13 85.7 7.3 52 76-127 453-507 (571)
73 cd02961 PDI_a_family Protein D 98.7 3.8E-08 8.2E-13 63.8 5.9 40 83-126 5-44 (101)
74 PLN02412 probable glutathione 98.7 1.6E-08 3.4E-13 74.2 4.5 55 64-129 7-61 (167)
75 cd02975 PfPDO_like_N Pyrococcu 98.7 3.4E-08 7.4E-13 68.1 5.1 32 95-126 20-51 (113)
76 TIGR02540 gpx7 putative glutat 98.7 2E-08 4.4E-13 72.1 3.9 33 96-128 21-53 (153)
77 PRK03147 thiol-disulfide oxido 98.6 5.9E-08 1.3E-12 70.1 5.3 60 58-128 33-92 (173)
78 TIGR01130 ER_PDI_fam protein d 98.6 4E-08 8.8E-13 80.4 4.9 48 77-128 348-395 (462)
79 PTZ00256 glutathione peroxidas 98.6 6.1E-08 1.3E-12 72.0 4.4 54 64-128 18-72 (183)
80 TIGR01130 ER_PDI_fam protein d 98.6 1E-07 2.3E-12 78.0 6.0 46 78-128 4-49 (462)
81 cd03014 PRX_Atyp2cys Peroxired 98.6 1E-07 2.2E-12 67.2 4.8 56 62-128 2-58 (143)
82 PRK13728 conjugal transfer pro 98.5 7.1E-08 1.5E-12 72.4 3.8 27 101-127 73-99 (181)
83 PF13899 Thioredoxin_7: Thiore 98.5 8.2E-08 1.8E-12 62.3 3.6 35 85-119 5-39 (82)
84 TIGR03137 AhpC peroxiredoxin. 98.5 1.4E-07 3E-12 70.3 5.1 58 61-128 3-63 (187)
85 PF00578 AhpC-TSA: AhpC/TSA fa 98.5 1.2E-07 2.6E-12 64.7 4.3 56 62-128 1-57 (124)
86 PRK00522 tpx lipid hydroperoxi 98.5 1.3E-07 2.9E-12 69.2 4.6 59 58-127 16-75 (167)
87 TIGR02740 TraF-like TraF-like 98.5 9.5E-08 2.1E-12 75.5 4.0 32 96-127 165-196 (271)
88 KOG0190 Protein disulfide isom 98.5 1.2E-07 2.5E-12 80.4 4.5 49 75-128 25-73 (493)
89 TIGR00412 redox_disulf_2 small 98.5 1.2E-07 2.6E-12 61.1 3.6 28 101-128 2-29 (76)
90 PTZ00102 disulphide isomerase; 98.5 2E-07 4.3E-12 77.3 5.5 46 77-127 34-79 (477)
91 cd03011 TlpA_like_ScsD_MtbDsbE 98.5 2E-07 4.3E-12 63.8 4.5 31 96-126 19-49 (123)
92 cd02969 PRX_like1 Peroxiredoxi 98.5 3.4E-07 7.3E-12 66.7 5.8 56 63-128 1-56 (171)
93 cd02947 TRX_family TRX family; 98.5 3.1E-07 6.7E-12 58.2 4.9 38 85-126 2-39 (93)
94 TIGR01626 ytfJ_HI0045 conserve 98.4 1.4E-07 3.1E-12 70.9 3.1 29 96-124 58-86 (184)
95 COG0526 TrxA Thiol-disulfide i 98.4 2.9E-07 6.2E-12 59.4 3.9 32 97-128 32-63 (127)
96 cd03015 PRX_Typ2cys Peroxiredo 98.4 3.9E-07 8.5E-12 66.7 4.6 57 62-128 1-61 (173)
97 cd03018 PRX_AhpE_like Peroxire 98.4 6E-07 1.3E-11 63.3 5.2 57 61-128 2-60 (149)
98 cd02982 PDI_b'_family Protein 98.4 5E-07 1.1E-11 60.0 4.4 33 97-129 12-44 (103)
99 cd02960 AGR Anterior Gradient 98.4 6.4E-07 1.4E-11 63.9 4.7 35 84-118 10-44 (130)
100 cd02970 PRX_like2 Peroxiredoxi 98.3 1.2E-06 2.6E-11 61.4 5.5 32 97-128 23-55 (149)
101 PHA02125 thioredoxin-like prot 98.3 5.1E-07 1.1E-11 57.8 3.2 25 101-125 2-26 (75)
102 TIGR00411 redox_disulf_1 small 98.3 9.1E-07 2E-11 56.4 4.0 29 100-128 2-30 (82)
103 cd02968 SCO SCO (an acronym fo 98.3 8.8E-07 1.9E-11 61.9 4.1 33 96-128 21-54 (142)
104 cd02955 SSP411 TRX domain, SSP 98.3 9.9E-07 2.2E-11 62.3 4.0 27 91-117 9-35 (124)
105 PRK10606 btuE putative glutath 98.2 1.2E-06 2.5E-11 65.8 3.6 33 96-129 24-56 (183)
106 PRK10382 alkyl hydroperoxide r 98.2 1.6E-06 3.4E-11 65.2 4.1 59 60-128 2-63 (187)
107 PRK09437 bcp thioredoxin-depen 98.2 2.6E-06 5.7E-11 60.8 5.0 58 60-128 4-62 (154)
108 cd02966 TlpA_like_family TlpA- 98.2 2E-06 4.3E-11 56.4 4.0 32 96-127 18-49 (116)
109 PRK15000 peroxidase; Provision 98.2 2.2E-06 4.7E-11 64.9 4.0 63 61-128 3-66 (200)
110 cd03017 PRX_BCP Peroxiredoxin 98.1 5.2E-06 1.1E-10 57.8 5.4 33 96-128 22-55 (140)
111 PRK13190 putative peroxiredoxi 98.1 2.9E-06 6.3E-11 64.1 4.1 56 61-128 3-59 (202)
112 PRK13191 putative peroxiredoxi 98.1 3.6E-06 7.8E-11 64.4 4.6 59 59-128 6-65 (215)
113 PRK13599 putative peroxiredoxi 98.1 3.6E-06 7.8E-11 64.4 4.5 57 61-128 3-60 (215)
114 PTZ00137 2-Cys peroxiredoxin; 98.1 6.2E-06 1.3E-10 65.1 5.0 64 56-128 64-130 (261)
115 KOG0912 Thiol-disulfide isomer 98.0 4E-06 8.6E-11 67.6 3.4 42 83-128 3-44 (375)
116 cd02973 TRX_GRX_like Thioredox 98.0 5.4E-06 1.2E-10 51.2 3.3 28 100-127 2-29 (67)
117 KOG1731 FAD-dependent sulfhydr 98.0 1.3E-06 2.9E-11 74.8 0.3 49 75-127 39-87 (606)
118 cd03007 PDI_a_ERp29_N PDIa fam 98.0 9.3E-06 2E-10 56.9 4.5 40 78-122 4-48 (116)
119 PRK13189 peroxiredoxin; Provis 98.0 7.3E-06 1.6E-10 62.9 4.1 58 60-128 9-67 (222)
120 cd02971 PRX_family Peroxiredox 98.0 1.2E-05 2.5E-10 56.0 4.7 32 96-127 21-53 (140)
121 KOG4277 Uncharacterized conser 97.9 4.2E-06 9.1E-11 67.7 1.8 34 95-128 41-74 (468)
122 KOG2501 Thioredoxin, nucleored 97.9 6.3E-06 1.4E-10 60.5 2.1 33 96-128 32-64 (157)
123 KOG0191 Thioredoxin/protein di 97.9 1.2E-05 2.6E-10 65.9 4.0 34 95-128 45-78 (383)
124 TIGR02187 GlrX_arch Glutaredox 97.9 2.3E-05 4.9E-10 59.5 5.0 32 96-127 131-163 (215)
125 cd03016 PRX_1cys Peroxiredoxin 97.9 9.9E-06 2.1E-10 61.1 2.8 56 62-128 1-57 (203)
126 TIGR02187 GlrX_arch Glutaredox 97.7 3.1E-05 6.7E-10 58.7 3.8 31 97-127 19-52 (215)
127 COG4232 Thiol:disulfide interc 97.7 3.5E-05 7.7E-10 66.4 4.2 40 78-119 457-496 (569)
128 PTZ00253 tryparedoxin peroxida 97.7 6.1E-05 1.3E-09 56.5 4.6 60 59-128 5-68 (199)
129 KOG0191 Thioredoxin/protein di 97.7 4.5E-05 9.8E-10 62.5 4.2 47 77-127 146-192 (383)
130 cd02958 UAS UAS family; UAS is 97.6 6.9E-05 1.5E-09 51.2 4.1 33 85-117 5-37 (114)
131 TIGR02200 GlrX_actino Glutared 97.4 8.4E-05 1.8E-09 46.5 2.0 26 101-126 2-27 (77)
132 smart00594 UAS UAS domain. 97.4 0.00025 5.5E-09 49.3 4.4 35 83-117 13-47 (122)
133 KOG0914 Thioredoxin-like prote 97.4 0.00018 3.9E-09 55.7 3.7 63 64-128 113-175 (265)
134 cd03026 AhpF_NTD_C TRX-GRX-lik 97.2 0.00052 1.1E-08 45.5 3.9 32 97-128 12-43 (89)
135 PF06110 DUF953: Eukaryotic pr 97.1 0.0013 2.9E-08 46.2 5.7 47 81-127 3-56 (119)
136 TIGR02180 GRX_euk Glutaredoxin 97.0 0.00063 1.4E-08 43.2 2.4 25 101-125 1-25 (84)
137 cd01659 TRX_superfamily Thiore 96.9 0.0011 2.4E-08 37.7 3.1 22 101-122 1-22 (69)
138 TIGR02196 GlrX_YruB Glutaredox 96.8 0.0014 3.1E-08 39.9 2.9 22 101-122 2-23 (74)
139 KOG0911 Glutaredoxin-related p 96.6 0.0012 2.6E-08 51.1 2.1 44 77-126 3-46 (227)
140 PF14595 Thioredoxin_9: Thiore 96.6 0.0044 9.4E-08 43.9 4.9 32 96-127 40-71 (129)
141 cd03013 PRX5_like Peroxiredoxi 96.6 0.0022 4.9E-08 46.4 3.3 59 62-128 1-62 (155)
142 COG1225 Bcp Peroxiredoxin [Pos 96.3 0.0062 1.3E-07 44.8 4.3 59 59-128 3-62 (157)
143 PF03190 Thioredox_DsbH: Prote 96.3 0.0052 1.1E-07 45.5 3.5 29 88-116 28-56 (163)
144 PF00837 T4_deiodinase: Iodoth 96.0 0.011 2.5E-07 46.1 4.6 66 55-128 68-133 (237)
145 PRK11200 grxA glutaredoxin 1; 96.0 0.0078 1.7E-07 38.9 3.1 27 100-126 2-28 (85)
146 cd03419 GRX_GRXh_1_2_like Glut 95.9 0.005 1.1E-07 38.9 1.8 26 101-126 2-27 (82)
147 KOG3425 Uncharacterized conser 95.8 0.033 7.2E-07 39.4 5.5 46 81-127 10-63 (128)
148 KOG0913 Thiol-disulfide isomer 95.7 0.0016 3.5E-08 50.7 -1.3 39 79-123 27-65 (248)
149 PF02114 Phosducin: Phosducin; 95.6 0.017 3.7E-07 45.7 4.0 53 75-128 125-177 (265)
150 cd02976 NrdH NrdH-redoxin (Nrd 95.5 0.019 4.1E-07 34.8 3.1 23 101-123 2-24 (73)
151 cd03019 DsbA_DsbA DsbA family, 95.4 0.026 5.6E-07 40.4 4.2 33 96-128 14-46 (178)
152 PF13728 TraF: F plasmid trans 95.2 0.049 1.1E-06 41.7 5.3 39 87-127 112-150 (215)
153 PF11009 DUF2847: Protein of u 95.1 0.091 2E-06 36.2 5.9 49 78-128 2-50 (105)
154 cd02066 GRX_family Glutaredoxi 94.8 0.037 8E-07 33.2 3.0 25 101-125 2-26 (72)
155 PF13462 Thioredoxin_4: Thiore 94.7 0.072 1.6E-06 37.4 4.8 31 96-126 11-41 (162)
156 PRK13703 conjugal pilus assemb 94.2 0.062 1.3E-06 42.3 3.7 31 97-127 143-173 (248)
157 TIGR02183 GRXA Glutaredoxin, G 93.9 0.052 1.1E-06 35.3 2.4 25 101-125 2-26 (86)
158 PF02966 DIM1: Mitosis protein 93.5 0.43 9.2E-06 34.2 6.7 47 79-127 4-50 (133)
159 cd02991 UAS_ETEA UAS family, E 93.3 0.1 2.2E-06 36.2 3.3 31 85-115 5-39 (116)
160 TIGR02739 TraF type-F conjugat 93.3 0.19 4.1E-06 39.7 5.2 31 97-127 150-180 (256)
161 PF00462 Glutaredoxin: Glutare 93.2 0.14 3E-06 30.7 3.3 23 101-123 1-23 (60)
162 PHA03050 glutaredoxin; Provisi 92.4 0.26 5.6E-06 33.7 4.2 25 100-124 14-38 (108)
163 TIGR02190 GlrX-dom Glutaredoxi 92.3 0.11 2.3E-06 33.1 2.1 29 97-125 6-34 (79)
164 KOG3414 Component of the U4/U6 92.0 0.37 8E-06 34.5 4.6 47 79-127 7-53 (142)
165 TIGR02181 GRX_bact Glutaredoxi 91.8 0.094 2E-06 33.0 1.3 25 101-125 1-25 (79)
166 TIGR02189 GlrX-like_plant Glut 91.5 0.13 2.9E-06 34.5 1.9 25 101-125 10-34 (99)
167 PRK10954 periplasmic protein d 91.2 0.24 5.3E-06 37.2 3.3 32 97-128 37-71 (207)
168 TIGR00365 monothiol glutaredox 91.0 0.28 6E-06 32.8 3.1 30 97-126 11-44 (97)
169 cd03028 GRX_PICOT_like Glutare 90.3 0.2 4.4E-06 32.7 1.9 30 97-126 7-40 (90)
170 cd03418 GRX_GRXb_1_3_like Glut 89.7 0.23 5E-06 30.6 1.7 23 101-123 2-24 (75)
171 KOG1672 ATP binding protein [P 89.6 0.94 2E-05 34.7 5.2 50 75-128 66-115 (211)
172 PF13192 Thioredoxin_3: Thiore 89.3 0.64 1.4E-05 29.3 3.6 25 103-127 4-28 (76)
173 cd02981 PDI_b_family Protein D 89.1 1.6 3.5E-05 28.0 5.5 43 78-127 2-44 (97)
174 cd03027 GRX_DEP Glutaredoxin ( 88.8 0.3 6.4E-06 30.4 1.7 23 101-123 3-25 (73)
175 cd03020 DsbA_DsbC_DsbG DsbA fa 87.9 0.62 1.3E-05 34.5 3.2 26 96-121 76-101 (197)
176 PRK10824 glutaredoxin-4; Provi 87.8 0.57 1.2E-05 32.6 2.8 30 97-126 14-47 (115)
177 PRK10329 glutaredoxin-like pro 87.7 0.75 1.6E-05 29.6 3.2 24 101-124 3-26 (81)
178 cd03029 GRX_hybridPRX5 Glutare 87.6 0.44 9.4E-06 29.4 2.0 26 101-126 3-28 (72)
179 KOG3170 Conserved phosducin-li 86.7 2.2 4.7E-05 33.0 5.6 51 76-128 92-142 (240)
180 TIGR02194 GlrX_NrdH Glutaredox 85.6 0.47 1E-05 29.4 1.3 24 102-125 2-25 (72)
181 PRK10877 protein disulfide iso 83.3 1.8 3.9E-05 33.4 3.9 29 95-123 105-133 (232)
182 PRK10638 glutaredoxin 3; Provi 82.2 1 2.3E-05 28.6 1.9 26 101-126 4-29 (83)
183 PTZ00062 glutaredoxin; Provisi 77.9 2.7 5.9E-05 32.0 3.2 29 97-125 112-144 (204)
184 PRK11657 dsbG disulfide isomer 74.9 4.4 9.6E-05 31.6 3.8 29 96-124 116-144 (251)
185 COG0695 GrxC Glutaredoxin and 74.4 2.3 5E-05 27.3 1.7 26 101-126 3-28 (80)
186 PRK15317 alkyl hydroperoxide r 72.6 8.1 0.00018 32.9 5.1 32 96-127 114-146 (517)
187 TIGR03143 AhpF_homolog putativ 71.9 8.9 0.00019 33.1 5.2 33 95-127 473-506 (555)
188 COG0450 AhpC Peroxiredoxin [Po 70.4 3.9 8.4E-05 31.2 2.4 59 60-128 3-65 (194)
189 KOG1752 Glutaredoxin and relat 69.0 5.9 0.00013 27.1 2.9 25 97-122 13-37 (104)
190 PF06053 DUF929: Domain of unk 62.2 11 0.00023 29.8 3.5 32 95-126 56-87 (249)
191 COG1331 Highly conserved prote 60.6 9.5 0.00021 34.1 3.2 30 83-116 33-62 (667)
192 PF02630 SCO1-SenC: SCO1/SenC; 60.5 13 0.00027 27.2 3.5 32 96-127 51-83 (174)
193 PF00255 GSHPx: Glutathione pe 58.1 17 0.00036 25.0 3.5 32 96-128 20-51 (108)
194 PF13848 Thioredoxin_6: Thiore 56.2 32 0.0007 24.1 5.0 48 77-129 79-127 (184)
195 TIGR03140 AhpF alkyl hydropero 51.3 34 0.00074 29.1 5.1 31 97-127 116-147 (515)
196 COG1651 DsbG Protein-disulfide 50.5 23 0.00051 26.6 3.6 31 97-127 84-114 (244)
197 COG4545 Glutaredoxin-related p 49.5 11 0.00024 24.7 1.4 28 97-126 2-29 (85)
198 PF04592 SelP_N: Selenoprotein 47.2 24 0.00053 27.7 3.2 33 95-127 24-56 (238)
199 KOG3171 Conserved phosducin-li 46.4 37 0.00081 26.7 4.1 52 75-127 138-189 (273)
200 cd03069 PDI_b_ERp57 PDIb famil 45.7 77 0.0017 20.8 5.2 44 77-127 2-45 (104)
201 cd03066 PDI_b_Calsequestrin_mi 43.9 89 0.0019 20.3 5.7 44 77-127 2-46 (102)
202 COG0386 BtuE Glutathione perox 42.4 34 0.00074 25.3 3.2 33 96-129 24-56 (162)
203 cd03060 GST_N_Omega_like GST_N 41.9 17 0.00037 21.9 1.4 22 102-123 2-23 (71)
204 PRK15317 alkyl hydroperoxide r 40.3 50 0.0011 28.1 4.4 40 83-125 7-46 (517)
205 PF05768 DUF836: Glutaredoxin- 40.1 19 0.00042 22.7 1.5 24 101-124 2-25 (81)
206 cd03068 PDI_b_ERp72 PDIb famil 38.4 1.2E+02 0.0026 20.2 5.7 45 77-127 2-46 (107)
207 cd02974 AhpF_NTD_N Alkyl hydro 37.3 1.2E+02 0.0026 20.0 5.2 39 83-124 7-45 (94)
208 KOG0855 Alkyl hydroperoxide re 37.2 46 0.00099 25.2 3.2 37 59-105 62-98 (211)
209 cd03040 GST_N_mPGES2 GST_N fam 34.2 33 0.00071 20.8 1.8 23 102-124 3-25 (77)
210 KOG2640 Thioredoxin [Function 33.5 11 0.00025 30.7 -0.5 30 97-126 76-105 (319)
211 cd00570 GST_N_family Glutathio 33.1 21 0.00047 20.1 0.8 23 103-125 3-25 (71)
212 PF06580 His_kinase: Histidine 32.8 24 0.00053 22.5 1.1 11 7-17 10-20 (82)
213 cd03051 GST_N_GTT2_like GST_N 32.2 25 0.00055 20.7 1.1 21 103-123 3-23 (74)
214 cd03375 TPP_OGFOR Thiamine pyr 30.3 1.1E+02 0.0023 22.6 4.3 29 79-107 156-184 (193)
215 TIGR03140 AhpF alkyl hydropero 30.2 90 0.002 26.6 4.4 40 83-125 7-46 (515)
216 COG3019 Predicted metal-bindin 29.9 59 0.0013 23.7 2.7 23 99-121 26-48 (149)
217 cd03059 GST_N_SspA GST_N famil 29.6 34 0.00075 20.3 1.3 24 102-125 2-25 (73)
218 cd02015 TPP_AHAS Thiamine pyro 29.5 1.1E+02 0.0024 22.1 4.3 32 77-108 144-175 (186)
219 KOG0854 Alkyl hydroperoxide re 29.1 96 0.0021 23.7 3.8 59 58-128 4-64 (224)
220 PF02775 TPP_enzyme_C: Thiamin 29.0 1.1E+02 0.0024 21.2 4.1 28 77-104 124-153 (153)
221 cd02004 TPP_BZL_OCoD_HPCL Thia 28.5 1.3E+02 0.0028 21.4 4.4 30 77-106 142-171 (172)
222 cd02010 TPP_ALS Thiamine pyrop 26.9 1.2E+02 0.0026 22.0 4.0 30 77-106 140-169 (177)
223 COG1999 Uncharacterized protei 26.3 1E+02 0.0022 23.2 3.7 32 96-127 66-98 (207)
224 TIGR03143 AhpF_homolog putativ 25.9 1.7E+02 0.0036 25.3 5.3 38 84-124 355-393 (555)
225 cd02983 P5_C P5 family, C-term 25.0 2.4E+02 0.0052 19.5 5.8 50 76-129 3-56 (130)
226 cd02009 TPP_SHCHC_synthase Thi 24.7 1.3E+02 0.0027 21.7 3.8 29 77-105 145-173 (175)
227 PF06122 TraH: Conjugative rel 24.1 57 0.0012 26.8 2.0 48 81-128 68-116 (361)
228 cd02003 TPP_IolD Thiamine pyro 24.0 1.4E+02 0.003 22.1 4.0 30 77-106 154-183 (205)
229 PF00150 Cellulase: Cellulase 23.4 2.4E+02 0.0052 21.0 5.3 47 82-128 60-118 (281)
230 cd00946 FBP_aldolase_IIA Class 23.4 2.1E+02 0.0046 23.6 5.2 49 78-126 21-86 (345)
231 cd03041 GST_N_2GST_N GST_N fam 23.0 49 0.0011 20.3 1.2 21 103-123 4-24 (77)
232 cd03045 GST_N_Delta_Epsilon GS 22.8 48 0.001 19.7 1.1 24 103-126 3-26 (74)
233 cd00568 TPP_enzymes Thiamine p 22.5 2.1E+02 0.0044 19.8 4.5 29 77-105 139-167 (168)
234 PF14424 Toxin-deaminase: The 22.1 1.2E+02 0.0025 21.5 3.1 25 101-128 98-124 (133)
235 PRK07709 fructose-bisphosphate 21.5 2.9E+02 0.0062 22.1 5.5 50 78-127 23-75 (285)
236 COG0191 Fba Fructose/tagatose 20.7 2.4E+02 0.0051 22.8 4.8 50 78-127 23-75 (286)
237 cd02013 TPP_Xsc_like Thiamine 20.4 1.8E+02 0.0039 21.3 3.9 31 77-107 146-179 (196)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-13 Score=100.01 Aligned_cols=50 Identities=32% Similarity=0.709 Sum_probs=44.2
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
...+.+.++|++.+. +.+.||+|+|||+||+||+.+.|.+++++++|.|+
T Consensus 44 ~~~~~s~~~~~~~Vi---~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~ 93 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVI---NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK 93 (150)
T ss_pred cccccCHHHHHHHHH---ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe
Confidence 455667888988776 68999999999999999999999999999999875
No 2
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.4e-13 Score=94.92 Aligned_cols=49 Identities=31% Similarity=0.681 Sum_probs=39.9
Q ss_pred eCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 80 INDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 80 i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+.+.++++.....+...++++||+|||+|||||+.+.|.|++|+.+|++
T Consensus 4 v~~~~~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~ 52 (106)
T KOG0907|consen 4 VETVSDLDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD 52 (106)
T ss_pred EEehhhHHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC
Confidence 3444455555555546679999999999999999999999999999986
No 3
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.39 E-value=7.5e-13 Score=89.51 Aligned_cols=46 Identities=20% Similarity=0.489 Sum_probs=41.7
Q ss_pred eeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 79 ~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+++.++|++++ +.++++||+|||+||++|+.+.|.|++++++|++
T Consensus 3 ~i~~~~~~~~~i----~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~ 48 (102)
T cd02948 3 EINNQEEWEELL----SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD 48 (102)
T ss_pred EccCHHHHHHHH----ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC
Confidence 567889999988 4689999999999999999999999999999864
No 4
>PHA02278 thioredoxin-like protein
Probab=99.39 E-value=6.6e-13 Score=90.93 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=37.9
Q ss_pred CChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 81 ~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
++.++|++.+ +.++++||+|||+||+||+.|.|.|+++++++.
T Consensus 2 ~~~~~~~~~i----~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~ 44 (103)
T PHA02278 2 NSLVDLNTAI----RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD 44 (103)
T ss_pred CCHHHHHHHH----hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc
Confidence 4567888888 468999999999999999999999999998754
No 5
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.39 E-value=6.6e-13 Score=92.74 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=38.5
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
.++|++.+.. +.++++||+|||+||+||+.|.|.|++++++|+++
T Consensus 2 ~~~~~~~i~~--~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~ 46 (114)
T cd02954 2 GWAVDQAILS--EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF 46 (114)
T ss_pred HHHHHHHHhc--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc
Confidence 4567777752 36889999999999999999999999999999863
No 6
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.38 E-value=9.5e-13 Score=89.25 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=38.8
Q ss_pred ChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 82 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+.++|++++.. ..+++|||+|||+||++|+.+.|.|++++++|+
T Consensus 2 ~~~~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~ 45 (103)
T cd02985 2 SVEELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN 45 (103)
T ss_pred CHHHHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC
Confidence 56789898863 348999999999999999999999999999984
No 7
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.35 E-value=1.4e-12 Score=94.21 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=44.1
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+..+.+.++|++.+.. ..+++|||+|||+||+||+.|.|.|++++++|++
T Consensus 5 l~~l~s~~e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~ 54 (142)
T PLN00410 5 LPHLHSGWAVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKN 54 (142)
T ss_pred HhhhCCHHHHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC
Confidence 4567888999998863 4588999999999999999999999999999976
No 8
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.26 E-value=1e-11 Score=86.67 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=38.3
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++|++.+.. ..+++|||+|+|+||+||+.|.|.|++++++|++
T Consensus 2 ~~~~d~~i~~--~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~ 45 (114)
T cd02986 2 KKEVDQAIKS--TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK 45 (114)
T ss_pred HHHHHHHHHh--cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC
Confidence 3567787763 3589999999999999999999999999999975
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.25 E-value=2.1e-11 Score=84.79 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=41.0
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
++.+++ .++|++++.- ...++++||+|||+||++|+.+.|.|++++++|++
T Consensus 10 ~v~~l~-~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~ 60 (113)
T cd03006 10 PVLDFY-KGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD 60 (113)
T ss_pred CeEEec-hhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC
Confidence 456666 4478775211 15789999999999999999999999999999876
No 10
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.25 E-value=1.2e-11 Score=83.65 Aligned_cols=34 Identities=21% Similarity=0.460 Sum_probs=32.0
Q ss_pred hCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 95 ~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..++++||+|||+||++|+.+.|.|++++++|++
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~ 49 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ 49 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc
Confidence 6799999999999999999999999999999864
No 11
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.23 E-value=2.3e-11 Score=81.62 Aligned_cols=47 Identities=28% Similarity=0.649 Sum_probs=40.4
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++ +.++|++.+. +.+++++|+|||+||++|+.+.|.|++++++|++
T Consensus 4 ~~l-~~~~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~ 50 (104)
T cd03004 4 ITL-TPEDFPELVL---NRKEPWLVDFYAPWCGPCQALLPELRKAARALKG 50 (104)
T ss_pred eEc-CHHHHHHHHh---cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC
Confidence 445 4668988876 5678999999999999999999999999999865
No 12
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.23 E-value=2.1e-11 Score=81.69 Aligned_cols=47 Identities=17% Similarity=0.430 Sum_probs=40.5
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+++++ .++|++.+. .+++++|+|||+||++|+.+.|.|++++++|++
T Consensus 3 ~~~l~-~~~f~~~v~----~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~ 49 (101)
T cd03003 3 IVTLD-RGDFDAAVN----SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG 49 (101)
T ss_pred eEEcC-HhhHHHHhc----CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC
Confidence 44554 668998884 569999999999999999999999999999876
No 13
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.9e-11 Score=97.30 Aligned_cols=51 Identities=35% Similarity=0.803 Sum_probs=42.1
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
++++++. +|++.+.+. +..+||||+||||||+||+++.|.|++++.+|+|+
T Consensus 25 I~dvT~a-nfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~ 75 (304)
T COG3118 25 IKDVTEA-NFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK 75 (304)
T ss_pred ceechHh-HHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc
Confidence 6677655 676655442 45669999999999999999999999999999985
No 14
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.20 E-value=4.6e-11 Score=82.61 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=43.8
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+.+|++.++|.+.+. ++++|||+||++||++|+.+.|.|++++++|++
T Consensus 5 ~v~~i~~~~~~~~~i~----~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~ 53 (113)
T cd02989 5 KYREVSDEKEFFEIVK----SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE 53 (113)
T ss_pred CeEEeCCHHHHHHHHh----CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC
Confidence 4678888889999884 578999999999999999999999999999864
No 15
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.18 E-value=4.6e-11 Score=82.07 Aligned_cols=51 Identities=20% Similarity=0.382 Sum_probs=41.7
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+.++++ ++|.+.+... +.++++||+||++||++|+.+.|.|++++++|++
T Consensus 5 ~v~~i~~-~~f~~~i~~~-~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~ 55 (113)
T cd02957 5 EVREISS-KEFLEEVTKA-SKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE 55 (113)
T ss_pred eEEEEcH-HHHHHHHHcc-CCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 3567776 7888887521 1248999999999999999999999999999875
No 16
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.18 E-value=7.4e-11 Score=86.05 Aligned_cols=51 Identities=16% Similarity=0.516 Sum_probs=41.7
Q ss_pred cCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+.+++ .++|++.+.. +.++++||+|||+||++|+.+.|.|++++++|++
T Consensus 28 ~~v~~l~-~~~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~ 78 (152)
T cd02962 28 EHIKYFT-PKTLEEELER--DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN 78 (152)
T ss_pred CccEEcC-HHHHHHHHHh--cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc
Confidence 3455665 5679888752 3467999999999999999999999999999864
No 17
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.18 E-value=4.2e-11 Score=79.13 Aligned_cols=42 Identities=29% Similarity=0.484 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 85 ~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+|++.+.. +.++++||+|||+||++|+.+.|.+++++++|++
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~ 43 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG 43 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC
Confidence 46666642 3478999999999999999999999999999865
No 18
>PTZ00051 thioredoxin; Provisional
Probab=99.17 E-value=7.2e-11 Score=78.16 Aligned_cols=48 Identities=19% Similarity=0.571 Sum_probs=42.8
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+.++++.++|++++ +.+++++|+||++||++|+.+.|.|+++++++++
T Consensus 2 v~~i~~~~~~~~~~----~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~ 49 (98)
T PTZ00051 2 VHIVTSQAEFESTL----SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK 49 (98)
T ss_pred eEEecCHHHHHHHH----hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC
Confidence 46788888999988 4689999999999999999999999999998764
No 19
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.9e-11 Score=94.32 Aligned_cols=51 Identities=22% Similarity=0.504 Sum_probs=46.4
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++.|.+..+|+..+.+ ..++.|+|+|+|+|||||+.++|.|+.|+.+|++
T Consensus 2 ~Vi~v~~d~df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~ 52 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG 52 (288)
T ss_pred CeEEecCcHHHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhCcc
Confidence 57889999999998875 4578999999999999999999999999999985
No 20
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.17 E-value=5.6e-11 Score=80.01 Aligned_cols=47 Identities=28% Similarity=0.640 Sum_probs=40.5
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+++ .++|++.+. +.++++||+|||+||++|+.+.|.|+++++++++
T Consensus 3 ~~l~-~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~ 49 (109)
T cd03002 3 YELT-PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG 49 (109)
T ss_pred EEcc-hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC
Confidence 3454 557888886 5788999999999999999999999999999875
No 21
>PRK09381 trxA thioredoxin; Provisional
Probab=99.15 E-value=1e-10 Score=79.21 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=41.1
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+++++. ++|++.+. +.+++++|+||++||++|+.+.|.|++++++|++
T Consensus 4 ~v~~~~~-~~~~~~v~---~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~ 52 (109)
T PRK09381 4 KIIHLTD-DSFDTDVL---KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG 52 (109)
T ss_pred cceeeCh-hhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC
Confidence 4667754 57776553 4688999999999999999999999999999975
No 22
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.14 E-value=1.3e-10 Score=79.24 Aligned_cols=50 Identities=18% Similarity=0.422 Sum_probs=40.9
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+.+++ .++|+.++.. .+.+++++|+|||+||++|+.+.|.|++++++|++
T Consensus 3 v~~~~-~~~~~~~~~~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~ 52 (109)
T cd02993 3 VVTLS-RAEIEALAKG-ERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG 52 (109)
T ss_pred ceecc-HHHHHHHHhh-hhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc
Confidence 34454 5578887742 14689999999999999999999999999999875
No 23
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.13 E-value=1.5e-10 Score=76.76 Aligned_cols=48 Identities=25% Similarity=0.680 Sum_probs=40.6
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+.+++ .++|++.+. +.+++++|+||++||++|+.+.|.++++++.|++
T Consensus 2 v~~l~-~~~f~~~i~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 49 (104)
T cd02995 2 VKVVV-GKNFDEVVL---DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG 49 (104)
T ss_pred eEEEc-hhhhHHHHh---CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC
Confidence 34455 557888886 5679999999999999999999999999998865
No 24
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.13 E-value=8.5e-11 Score=84.37 Aligned_cols=41 Identities=24% Similarity=0.644 Sum_probs=35.9
Q ss_pred hHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 84 ~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+|++.+ ..++++||+|||+||++|+.+.|.|++++++|++
T Consensus 11 ~~~~~a~----~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~ 51 (142)
T cd02950 11 TPPEVAL----SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD 51 (142)
T ss_pred CCHHHHH----hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc
Confidence 3466665 4799999999999999999999999999999865
No 25
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.13 E-value=1.4e-10 Score=78.63 Aligned_cols=46 Identities=30% Similarity=0.640 Sum_probs=39.2
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+.+++ .++|++++. .+++++|+|||+||++|+.+.|.|++++++++
T Consensus 3 v~~l~-~~~f~~~i~----~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~ 48 (108)
T cd02996 3 IVSLT-SGNIDDILQ----SAELVLVNFYADWCRFSQMLHPIFEEAAAKIK 48 (108)
T ss_pred eEEcC-HhhHHHHHh----cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHh
Confidence 45564 668998874 57899999999999999999999999998764
No 26
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.12 E-value=1.6e-10 Score=79.90 Aligned_cols=48 Identities=25% Similarity=0.584 Sum_probs=40.2
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+++++ .++|++.+. +.++++||+|||+||++|+.+.|.|++++++|++
T Consensus 3 v~~l~-~~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~ 50 (114)
T cd02992 3 VIVLD-AASFNSALL---GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRK 50 (114)
T ss_pred eEECC-HHhHHHHHh---cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHh
Confidence 34454 668988886 5568999999999999999999999999998753
No 27
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.09 E-value=9.2e-11 Score=85.10 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=30.2
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+++|+|+|||+||+||+.++|.|+++++++.+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~ 56 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTD 56 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999887653
No 28
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.09 E-value=1.5e-10 Score=79.40 Aligned_cols=45 Identities=22% Similarity=0.611 Sum_probs=36.8
Q ss_pred ChhHHHH-HHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 82 DSDHLDQ-ILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 82 s~~~f~~-~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+.++|++ ++. .+.++++||+|||+||++|+.+.|.+++++++|++
T Consensus 10 ~~~~~~~~~~~--~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~ 55 (111)
T cd02963 10 TFSQYENEIVP--KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP 55 (111)
T ss_pred eHHHHHHhhcc--ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh
Confidence 4556765 432 13689999999999999999999999999999864
No 29
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.08 E-value=2.2e-10 Score=75.59 Aligned_cols=45 Identities=31% Similarity=0.733 Sum_probs=39.7
Q ss_pred CChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 81 ~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+.++|++.+. +.++++||.||++||++|+.+.|.|++++++|++
T Consensus 4 lt~~~f~~~i~---~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~ 48 (103)
T PF00085_consen 4 LTDENFEKFIN---ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD 48 (103)
T ss_dssp ESTTTHHHHHT---TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHH---ccCCCEEEEEeCCCCCccccccceeccccccccc
Confidence 34668999885 4589999999999999999999999999999874
No 30
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.08 E-value=3e-10 Score=75.79 Aligned_cols=45 Identities=24% Similarity=0.559 Sum_probs=37.0
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+++++ .++|++++. +. +||+|||+||++|+.+.|.|+++++++++
T Consensus 3 v~~l~-~~~f~~~~~-----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~ 47 (101)
T cd02994 3 VVELT-DSNWTLVLE-----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDD 47 (101)
T ss_pred eEEcC-hhhHHHHhC-----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc
Confidence 45665 668988773 33 78999999999999999999999987753
No 31
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.08 E-value=2.8e-10 Score=84.52 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=43.3
Q ss_pred cCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+.+|++.++|.+.+... ..+.+|||+||++||++|+.|.|.|++|+++|++
T Consensus 62 g~v~ei~~~~~f~~~v~~~-~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~ 114 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKE-GKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA 114 (175)
T ss_pred CeEEEcCCHHHHHHHHHhc-CCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC
Confidence 4567888867888877521 1235999999999999999999999999999864
No 32
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.07 E-value=1.6e-10 Score=77.85 Aligned_cols=40 Identities=28% Similarity=0.649 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.++|+++. .+++++|+|||+||++|+.+.|.|++++++|+
T Consensus 6 ~~~~~~~~-----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~ 45 (104)
T cd03000 6 DDSFKDVR-----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELK 45 (104)
T ss_pred hhhhhhhc-----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHH
Confidence 35677643 47899999999999999999999999999985
No 33
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.06 E-value=3e-10 Score=79.87 Aligned_cols=48 Identities=19% Similarity=0.483 Sum_probs=40.8
Q ss_pred eeCChhHHHHHHHHhhhCCCcEEEEEeC-------CCChhhhhhHHHHHHHHHHhcC
Q 033006 79 PINDSDHLDQILLRAQELSQPILIDWMA-------SWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 79 ~i~s~~~f~~~l~~a~~~~k~vvV~F~A-------~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+.+.++|.+.+.. ..+++|+|+||| +||++|+.+.|.+++++.+|++
T Consensus 5 ~~~~~~~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~ 59 (119)
T cd02952 5 AVRGYEEFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE 59 (119)
T ss_pred cccCHHHHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC
Confidence 35667788888862 247899999999 9999999999999999999874
No 34
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.06 E-value=5.5e-10 Score=74.17 Aligned_cols=48 Identities=23% Similarity=0.563 Sum_probs=39.9
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+.+++ .++|++.+. +.+++++|.||++||++|+.+.|.|+++++++++
T Consensus 2 v~~l~-~~~~~~~i~---~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~ 49 (103)
T cd03001 2 VVELT-DSNFDKKVL---NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG 49 (103)
T ss_pred eEEcC-HHhHHHHHh---cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC
Confidence 34454 567888775 5577899999999999999999999999998865
No 35
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.06 E-value=3.2e-10 Score=75.19 Aligned_cols=45 Identities=27% Similarity=0.657 Sum_probs=37.7
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
++++ .++|+..+. +.+++|+|||+||++|+.+.|.|+++++++++
T Consensus 3 ~~l~-~~~f~~~~~-----~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~ 47 (102)
T cd03005 3 LELT-EDNFDHHIA-----EGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNN 47 (102)
T ss_pred eECC-HHHHHHHhh-----cCCEEEEEECCCCHHHHHhCHHHHHHHHHHhc
Confidence 4454 557988884 33699999999999999999999999999865
No 36
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.04 E-value=3.8e-10 Score=78.59 Aligned_cols=42 Identities=24% Similarity=0.517 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 85 ~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
++++.++.|...+++|+|+|||+||++|+.|.|.+.+....+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~ 48 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEIS 48 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHH
Confidence 466777777788999999999999999999999999976643
No 37
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.03 E-value=5.9e-10 Score=82.86 Aligned_cols=57 Identities=21% Similarity=0.375 Sum_probs=41.6
Q ss_pred cccccccCCCCCCCCCcC-eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHH
Q 033006 59 DVRVEALWPDLSRPTSVE-LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAA 124 (129)
Q Consensus 59 ~~~~g~~~P~~~~~~~~~-~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~ 124 (129)
...+|..+|+++..+..+ ...+ +.+.+ ..++++||+|||+||++|+.++|.++++++
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~-~~~~~--------~~gk~vvv~FwatwC~~C~~e~p~l~~l~~ 95 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFY-QADVL--------TQGKPVLLNVWATWCPTCRAEHQYLNQLSA 95 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccc-cHHHh--------cCCCEEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 456788888888776532 1111 12111 358999999999999999999999999875
No 38
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.03 E-value=7.1e-10 Score=73.10 Aligned_cols=43 Identities=21% Similarity=0.534 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 82 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
+.++|++++.. ..+++++|+||++||++|+.+.|.|+++++++
T Consensus 1 s~~~~~~~~~~--~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~ 43 (97)
T cd02984 1 SEEEFEELLKS--DASKLLVLHFWAPWAEPCKQMNQVFEELAKEA 43 (97)
T ss_pred CHHHHHHHHhh--CCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh
Confidence 35678888863 22699999999999999999999999999885
No 39
>PRK10996 thioredoxin 2; Provisional
Probab=99.01 E-value=1.9e-09 Score=76.98 Aligned_cols=43 Identities=35% Similarity=0.732 Sum_probs=38.4
Q ss_pred ChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 82 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+.++|++++ +.+++++|+|||+||++|+.+.|.|+++++++++
T Consensus 41 ~~~~~~~~i----~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~ 83 (139)
T PRK10996 41 TGETLDKLL----QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG 83 (139)
T ss_pred CHHHHHHHH----hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC
Confidence 567898887 4689999999999999999999999999998865
No 40
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.00 E-value=9.2e-10 Score=73.08 Aligned_cols=46 Identities=24% Similarity=0.610 Sum_probs=38.7
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+++++ .++|++.+. .+++++|+|||+||++|+.+.|.+++++++++
T Consensus 2 ~~~l~-~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~ 47 (104)
T cd02997 2 VVHLT-DEDFRKFLK----KEKHVLVMFYAPWCGHCKKMKPEFTKAATELK 47 (104)
T ss_pred eEEec-hHhHHHHHh----hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHh
Confidence 34554 457888874 57799999999999999999999999998886
No 41
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.99 E-value=1.2e-09 Score=80.31 Aligned_cols=62 Identities=23% Similarity=0.399 Sum_probs=45.3
Q ss_pred cccccccccccCCCCCCCCCcCe-eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHH
Q 033006 55 SARRDVRVEALWPDLSRPTSVEL-EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 55 ~~~~~~~~g~~~P~~~~~~~~~~-~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~ 125 (129)
.......+|..+|+++.++..+- ..+. .+++ ..+++++|+||++||++|+.+.|.+++++++
T Consensus 29 ~~~~~~~vG~~ap~f~l~~~~G~~~~~~-~~~~--------~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~ 91 (173)
T TIGR00385 29 KALPSALIGKPVPAFPLAALREPLQAYT-PEAF--------IQGKPVLLNVWASWCPPCRAEHPYLNELAKD 91 (173)
T ss_pred ccCcchhcCCCCCCccccccCCCCcccC-HHHh--------cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc
Confidence 33345678899999988864431 1221 1111 3589999999999999999999999999764
No 42
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=3.2e-10 Score=103.24 Aligned_cols=64 Identities=16% Similarity=0.414 Sum_probs=47.3
Q ss_pred cccccccccCCCCCCCCC-cCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 57 RRDVRVEALWPDLSRPTS-VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 57 ~~~~~~g~~~P~~~~~~~-~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
......|..+|++..+.. .+..+++ +.+.+ .+++|||+|||+||++|+.+.|.|++++++|+++
T Consensus 388 ~~~~~~g~~~p~f~~~~~~~~g~~~~----l~~~l-----kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~ 452 (1057)
T PLN02919 388 LESKKTATKVPEFPPKLDWLNTAPLQ----FRRDL-----KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ 452 (1057)
T ss_pred hhccccCCcCCCCcccccccCCcccc----chhhc-----CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC
Confidence 445667888888876642 2222332 22222 4899999999999999999999999999999764
No 43
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1e-09 Score=92.69 Aligned_cols=48 Identities=27% Similarity=0.704 Sum_probs=42.3
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+..+. ..+|++++. +.++-|+|.|||||||+|+++.|++++||+.|++
T Consensus 368 VkvvV-gknfd~iv~---de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~ 415 (493)
T KOG0190|consen 368 VKVVV-GKNFDDIVL---DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD 415 (493)
T ss_pred eEEEe-ecCHHHHhh---ccccceEEEEcCcccchhhhhhhHHHHHHHHhcC
Confidence 44554 458999886 8899999999999999999999999999999986
No 44
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.95 E-value=9e-10 Score=83.18 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=43.8
Q ss_pred cccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 61 ~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
..+..+|+++..+..+ ..++ .+++ .+++|||+|||+||++|+.++|.|++++++|+++
T Consensus 14 ~~~~~~pdf~l~d~~G-~~vs-L~~~---------kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~ 71 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEG-TTVP-MSSL---------KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL 71 (199)
T ss_pred hcCCCCCceEEECCCC-CEEe-HHHh---------CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC
Confidence 3445678887766433 3333 2233 4899999999999999999999999999999753
No 45
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.95 E-value=1.8e-09 Score=83.36 Aligned_cols=52 Identities=21% Similarity=0.563 Sum_probs=41.9
Q ss_pred CeeeeCChhHHHHHHHHhh-hCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 76 ELEPINDSDHLDQILLRAQ-ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~-~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+.+++ .++|++++.... ..+++++|+|||+||++|+.+.|.|++++++|++
T Consensus 31 ~Vv~Lt-~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~ 83 (224)
T PTZ00443 31 ALVLLN-DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG 83 (224)
T ss_pred CcEECC-HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC
Confidence 455665 668999875211 1358999999999999999999999999999976
No 46
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.93 E-value=1.6e-09 Score=72.81 Aligned_cols=41 Identities=24% Similarity=0.588 Sum_probs=33.8
Q ss_pred hHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcC
Q 033006 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFDT 128 (129)
Q Consensus 84 ~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~l---e~La~~y~~ 128 (129)
++|++.+ +.++++||+|||+||++|+.+.|.+ +++++.+++
T Consensus 2 ~~~~~~~----~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~ 45 (104)
T cd02953 2 AALAQAL----AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK 45 (104)
T ss_pred HHHHHHH----HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC
Confidence 3566666 4789999999999999999999988 678877653
No 47
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.93 E-value=1.1e-09 Score=74.17 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=30.4
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++++||+||++||++|+.+.|.+++++++|.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~ 52 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD 52 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC
Confidence 389999999999999999999999999988854
No 48
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.93 E-value=1.1e-09 Score=77.52 Aligned_cols=58 Identities=29% Similarity=0.604 Sum_probs=42.1
Q ss_pred ccccCCCCCCCC-CcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcCC
Q 033006 62 VEALWPDLSRPT-SVELEPINDSDHLDQILLRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 62 ~g~~~P~~~~~~-~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~-WC~pC~~~~p~le~La~~y~~k 129 (129)
+|..+|+++..+ ..+...+...+ + .++++||+||++ ||++|+..+|.+.+++++|+++
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~-~---------~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~ 61 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSD-F---------KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK 61 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGG-G---------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCeEEEeecCCCCEecHHH-h---------CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC
Confidence 577788887643 12234444332 3 599999999999 9999999999999999988653
No 49
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.93 E-value=2e-09 Score=81.15 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=39.7
Q ss_pred cCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+.+++. ++|...+..+ +.+.+|||+||++||++|+.|.|.|++||++|++
T Consensus 82 G~v~eis~-~~f~~eV~~a-s~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~ 133 (192)
T cd02988 82 GEVYEISK-PDYVREVTEA-SKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD 133 (192)
T ss_pred CeEEEeCH-HHHHHHHHhc-CCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC
Confidence 45667764 4565544321 2346899999999999999999999999999864
No 50
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.92 E-value=2.2e-09 Score=74.33 Aligned_cols=31 Identities=35% Similarity=0.594 Sum_probs=29.2
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
.++++||+||++||++|+.+.|.++++++++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~ 54 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG 54 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999876
No 51
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.92 E-value=1.7e-09 Score=83.98 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=45.7
Q ss_pred cccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 59 ~~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
....|..+|+++..+..+ ..+. ..++ .++++||+|||+||++|+.+.|.|++++++|+++
T Consensus 72 ~~~~g~~aPdF~l~d~~G-~~vs-Lsd~---------kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~ 131 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDG-KDVA-LSKF---------KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ 131 (236)
T ss_pred chhcCCCCCceEEECCCC-CEEe-HHHh---------CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC
Confidence 345677778887776433 3332 2223 4899999999999999999999999999999753
No 52
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.92 E-value=2.6e-09 Score=89.96 Aligned_cols=51 Identities=18% Similarity=0.398 Sum_probs=42.3
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+++++ .++|+.++.. .+.++++||+|||+||++|+.|.|.|++++++|++
T Consensus 352 ~Vv~L~-~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~ 402 (463)
T TIGR00424 352 NVVSLS-RPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG 402 (463)
T ss_pred CeEECC-HHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc
Confidence 455555 5589998742 15789999999999999999999999999999875
No 53
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.92 E-value=1.9e-09 Score=71.37 Aligned_cols=46 Identities=30% Similarity=0.700 Sum_probs=38.8
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.+++ .++|++++. +.+++++|.||++||++|+.+.|.+++++++++
T Consensus 3 ~~l~-~~~~~~~~~---~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~ 48 (105)
T cd02998 3 VELT-DSNFDKVVG---DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFA 48 (105)
T ss_pred EEcc-hhcHHHHhc---CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhC
Confidence 4454 457888775 567799999999999999999999999999886
No 54
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.91 E-value=1.4e-09 Score=79.44 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=29.4
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.++..||+|||+||++|+.++|.+++++++|+
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~ 80 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG 80 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC
Confidence 46778999999999999999999999999985
No 55
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.89 E-value=2.3e-09 Score=91.36 Aligned_cols=55 Identities=25% Similarity=0.422 Sum_probs=41.6
Q ss_pred ccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 60 ~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
...+..+|+++..+..+- .+. + +.+++|||+|||+||++|+.++|.|++++++|+
T Consensus 32 ~~~~~~lP~f~l~D~dG~-~v~--------l----skGKpVvV~FWATWCppCk~emP~L~eL~~e~k 86 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPA-SVY--------L----KKDKPTLIKFWASWCPLCLSELGETEKWAQDAK 86 (521)
T ss_pred ccccCCCCCeEeecCCCc-eee--------c----cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 444556677766654432 221 1 358999999999999999999999999999986
No 56
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.89 E-value=4.3e-09 Score=68.96 Aligned_cols=43 Identities=33% Similarity=0.814 Sum_probs=37.4
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++|.+.+. ..+++++|.||++||++|+.+.|.|+++++++++
T Consensus 3 ~~~~~~~~~---~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~ 45 (101)
T TIGR01068 3 DANFDETIA---SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG 45 (101)
T ss_pred HHHHHHHHh---hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC
Confidence 457878775 4577999999999999999999999999988864
No 57
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.88 E-value=1.9e-09 Score=75.56 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=30.9
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++++||+|||+||++|+.++|.+++++++|++
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~ 48 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE 48 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999988864
No 58
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.88 E-value=2.4e-09 Score=74.45 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=38.9
Q ss_pred ChhHHHHHHHHhhhCCCcEEEEEeCCC--ChhhhhhHHHHHHHHHHhcCC
Q 033006 82 DSDHLDQILLRAQELSQPILIDWMASW--CRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 82 s~~~f~~~l~~a~~~~k~vvV~F~A~W--C~pC~~~~p~le~La~~y~~k 129 (129)
+..+|++.+ ..+.++||+|||+| ||+|+.+.|.|++++++|+++
T Consensus 16 ~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~ 61 (111)
T cd02965 16 DAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR 61 (111)
T ss_pred ccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc
Confidence 356788887 46899999999997 999999999999999999874
No 59
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.87 E-value=4.2e-09 Score=69.36 Aligned_cols=42 Identities=33% Similarity=0.759 Sum_probs=37.2
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++|++++ ..+++++|+||++||++|+.+.|.|+++++.+++
T Consensus 3 ~~~~~~~~----~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~ 44 (102)
T TIGR01126 3 ASNFDDIV----LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG 44 (102)
T ss_pred hhhHHHHh----ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc
Confidence 45788877 3689999999999999999999999999998875
No 60
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.86 E-value=3.4e-09 Score=69.76 Aligned_cols=31 Identities=35% Similarity=0.815 Sum_probs=29.0
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
||+++|+|||+||++|+.+.|.|.++.++|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~ 31 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYK 31 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999998
No 61
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.85 E-value=5.9e-09 Score=73.34 Aligned_cols=47 Identities=17% Similarity=0.126 Sum_probs=40.3
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChh--hh--hhHHHHHHHHHHh
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRK--CI--YLKPKLEKLAAEF 126 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~p--C~--~~~p~le~La~~y 126 (129)
.+..++ .++|++.+. +.+.++|++|||+||+| |+ .+.|.+++++.+|
T Consensus 10 ~v~~lt-~~nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~ 60 (120)
T cd03065 10 RVIDLN-EKNYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQV 60 (120)
T ss_pred ceeeCC-hhhHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHH
Confidence 345555 578999886 67889999999999998 99 9999999999998
No 62
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.85 E-value=7.4e-09 Score=72.68 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=36.5
Q ss_pred ChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 82 DSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 82 s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+.++|.+.+ .+++.++|+|+++|||+|+.+.|.|++++++.+
T Consensus 12 t~~~~~~~i----~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~ 53 (122)
T TIGR01295 12 TVVRALEAL----DKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK 53 (122)
T ss_pred CHHHHHHHH----HcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC
Confidence 456788887 468889999999999999999999999998743
No 63
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.84 E-value=5.8e-09 Score=77.90 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=44.7
Q ss_pred cccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 59 ~~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+..+|..+|+++..+..+ ..+.-.+.. ..++++||+|||+||++|+.+.|.+.++.++++
T Consensus 45 ~~~vG~~aP~f~l~d~~G-~~v~l~~~~--------~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~ 104 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDG-EPVRIGGSI--------APGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE 104 (189)
T ss_pred CCCCCCcCCCcEecCCCC-CEEeccchh--------cCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC
Confidence 457888899998776543 233321100 358999999999999999999999999987653
No 64
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.84 E-value=7.7e-09 Score=68.89 Aligned_cols=40 Identities=35% Similarity=0.573 Sum_probs=35.2
Q ss_pred HHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 86 LDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 86 f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
++..+. +.+++++|.||++||+.|+.+.|.++++++++++
T Consensus 5 ~~~~~~---~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~ 44 (97)
T cd02949 5 LRKLYH---ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG 44 (97)
T ss_pred HHHHHH---hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC
Confidence 555565 6799999999999999999999999999998865
No 65
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.82 E-value=4.4e-09 Score=73.27 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=30.3
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++++||+||++||++|+.+.|.+++++++|.+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~ 49 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE 49 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh
Confidence 489999999999999999999999999988753
No 66
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.82 E-value=4.5e-09 Score=75.54 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=30.1
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+++|||+|||+||+ |+.++|.|++++++|++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~ 52 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD 52 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC
Confidence 489999999999999 99999999999999975
No 67
>PLN02309 5'-adenylylsulfate reductase
Probab=98.80 E-value=9.1e-09 Score=86.62 Aligned_cols=51 Identities=20% Similarity=0.460 Sum_probs=42.0
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+++++ .++|++++... +.++++||+|||+||++|+.|.|.|++++++|.+
T Consensus 346 ~Vv~Lt-~~nfe~ll~~~-~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~ 396 (457)
T PLN02309 346 NVVALS-RAGIENLLKLE-NRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG 396 (457)
T ss_pred CcEECC-HHHHHHHHHhh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc
Confidence 344554 56898887432 5789999999999999999999999999999865
No 68
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.80 E-value=7.5e-09 Score=71.74 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=26.8
Q ss_pred hCC-CcEEEEEeCCCChhhhhhHHHHH---HHHHHh
Q 033006 95 ELS-QPILIDWMASWCRKCIYLKPKLE---KLAAEF 126 (129)
Q Consensus 95 ~~~-k~vvV~F~A~WC~pC~~~~p~le---~La~~y 126 (129)
..+ ++++|+|||+||++|+.+.|.+. ++.+.+
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~ 46 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYI 46 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHH
Confidence 578 99999999999999999998874 455444
No 69
>PTZ00062 glutaredoxin; Provisional
Probab=98.78 E-value=1.1e-08 Score=77.97 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=38.7
Q ss_pred CChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 81 NDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 81 ~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+.++|++++. .+...+|++|||+||++|++|.|.+++|+++|++
T Consensus 4 ~~~ee~~~~i~---~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~ 48 (204)
T PTZ00062 4 IKKEEKDKLIE---SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS 48 (204)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC
Confidence 45778888874 3347899999999999999999999999999975
No 70
>PTZ00102 disulphide isomerase; Provisional
Probab=98.77 E-value=1.6e-08 Score=83.88 Aligned_cols=48 Identities=19% Similarity=0.627 Sum_probs=40.6
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+..+. .++|++++. +.+++|+|+|||+||++|+.+.|.|+++++++++
T Consensus 359 v~~l~-~~~f~~~v~---~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~ 406 (477)
T PTZ00102 359 VKVVV-GNTFEEIVF---KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD 406 (477)
T ss_pred eEEec-ccchHHHHh---cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc
Confidence 44554 557888764 6789999999999999999999999999998864
No 71
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.76 E-value=9e-09 Score=71.54 Aligned_cols=33 Identities=21% Similarity=0.525 Sum_probs=31.2
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++++||+||++||++|..+.|.|++++++|++
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~ 54 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD 54 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc
Confidence 479999999999999999999999999999975
No 72
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.74 E-value=2.7e-08 Score=85.71 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=44.0
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHH---HHHHHHhc
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL---EKLAAEFD 127 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~l---e~La~~y~ 127 (129)
...++.+.+++++.++++..++|+|+|+|||+||++|+.+.+.. +++.++++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~ 507 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA 507 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc
Confidence 45778889999999987777789999999999999999998875 66766664
No 73
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.72 E-value=3.8e-08 Score=63.76 Aligned_cols=40 Identities=38% Similarity=0.822 Sum_probs=35.4
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
.++|.+.+. .+++++|.||++||++|+.+.|.++++++.+
T Consensus 5 ~~~~~~~i~----~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~ 44 (101)
T cd02961 5 DDNFDELVK----DSKDVLVEFYAPWCGHCKALAPEYEKLAKEL 44 (101)
T ss_pred HHHHHHHHh----CCCcEEEEEECCCCHHHHhhhHHHHHHHHHh
Confidence 457888874 4669999999999999999999999999888
No 74
>PLN02412 probable glutathione peroxidase
Probab=98.71 E-value=1.6e-08 Score=74.19 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=41.3
Q ss_pred ccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 64 ALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 64 ~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
..+|+++.++..+ ..++ .+++ .++++||+|||+||++|+...|.|.++.++|+++
T Consensus 7 ~~~pdf~l~d~~G-~~v~-l~~~---------~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~ 61 (167)
T PLN02412 7 KSIYDFTVKDIGG-NDVS-LNQY---------KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ 61 (167)
T ss_pred CCCCceEEECCCC-CEEe-HHHh---------CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC
Confidence 3457777665433 3333 2223 4899999999999999999999999999999753
No 75
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.68 E-value=3.4e-08 Score=68.13 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=29.4
Q ss_pred hCCCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 95 ~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
..+..++|.|||+||++|+.+.|.++++++++
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~ 51 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS 51 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc
Confidence 45778999999999999999999999999876
No 76
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.67 E-value=2e-08 Score=72.08 Aligned_cols=33 Identities=21% Similarity=0.090 Sum_probs=31.1
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.|+++||+|||+||++|+..+|.+++++++|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~ 53 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP 53 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh
Confidence 489999999999999999999999999999975
No 77
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.63 E-value=5.9e-08 Score=70.12 Aligned_cols=60 Identities=17% Similarity=0.424 Sum_probs=44.4
Q ss_pred ccccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 58 ~~~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.....|..+|+++..+..+ ..+. ..++ .+++++|+||++||++|+...|.|.+++++|++
T Consensus 33 ~~~~~g~~~p~~~~~~~~g-~~~~-l~~~---------~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~ 92 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEG-KKIE-LKDL---------KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE 92 (173)
T ss_pred cccCCCCCCCCcEeecCCC-CEEe-HHHc---------CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc
Confidence 4566777778776654322 2221 2212 478999999999999999999999999999875
No 78
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.63 E-value=4e-08 Score=80.44 Aligned_cols=48 Identities=27% Similarity=0.721 Sum_probs=40.9
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+..+. .++|++++. +.++++||+|||+||++|+.+.|.++++++.+++
T Consensus 348 v~~l~-~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~ 395 (462)
T TIGR01130 348 VKVLV-GKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD 395 (462)
T ss_pred cEEee-CcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc
Confidence 44444 557888775 6789999999999999999999999999999876
No 79
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.58 E-value=6.1e-08 Score=71.97 Aligned_cols=54 Identities=7% Similarity=0.067 Sum_probs=37.8
Q ss_pred ccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcE-EEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 64 ALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 64 ~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~v-vV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
...|+++..+..+ ..++ .++| .++++ |+.|||+||++|+.++|.|+++.++|++
T Consensus 18 ~~~p~f~l~d~~G-~~vs-Ls~~---------~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~ 72 (183)
T PTZ00256 18 KSFFEFEAIDIDG-QLVQ-LSKF---------KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS 72 (183)
T ss_pred CcccceEeEcCCC-CEEe-HHHh---------CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 3446776665433 2332 2233 47765 4566999999999999999999999975
No 80
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.58 E-value=1e-07 Score=78.00 Aligned_cols=46 Identities=28% Similarity=0.633 Sum_probs=39.0
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+ +.++|+.++. .+++++|+|||+||++|+.+.|.++++++.+.+
T Consensus 4 ~~l-~~~~~~~~i~----~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~ 49 (462)
T TIGR01130 4 LVL-TKDNFDDFIK----SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK 49 (462)
T ss_pred eEC-CHHHHHHHHh----cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh
Confidence 344 4668999884 578999999999999999999999999988753
No 81
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.56 E-value=1e-07 Score=67.17 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=42.3
Q ss_pred ccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCC-ChhhhhhHHHHHHHHHHhcC
Q 033006 62 VEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASW-CRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 62 ~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~W-C~pC~~~~p~le~La~~y~~ 128 (129)
+|..+|+++.++..+ ..++ ..++ .++++||+||++| |++|+..+|.|+++.++|++
T Consensus 2 ~G~~aP~f~l~~~~g-~~~~-l~~~---------~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~ 58 (143)
T cd03014 2 VGDKAPDFTLVTSDL-SEVS-LADF---------AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN 58 (143)
T ss_pred CCCCCCCcEEECCCC-cEEe-HHHh---------CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC
Confidence 577788887776433 2333 2223 4889999999999 69999999999999998753
No 82
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.54 E-value=7.1e-08 Score=72.35 Aligned_cols=27 Identities=26% Similarity=0.648 Sum_probs=25.5
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
||+||++||++|+.++|.|++++++|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g 99 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG 99 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC
Confidence 778999999999999999999999985
No 83
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.54 E-value=8.2e-08 Score=62.33 Aligned_cols=35 Identities=29% Similarity=0.721 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHH
Q 033006 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119 (129)
Q Consensus 85 ~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~l 119 (129)
++++.++.|...++|++|+|+|+||++|+.|...+
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHH
Confidence 57777777888999999999999999999987655
No 84
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.53 E-value=1.4e-07 Score=70.35 Aligned_cols=58 Identities=9% Similarity=0.055 Sum_probs=44.5
Q ss_pred cccccCCCCCCCCC-cC-eeeeCChhHHHHHHHHhhhCCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcC
Q 033006 61 RVEALWPDLSRPTS-VE-LEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 61 ~~g~~~P~~~~~~~-~~-~~~i~s~~~f~~~l~~a~~~~k~vvV~F~-A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+|..+|+++.++. .+ ...++ .++| .|+++||+|| ++||++|....|.|.++.++|.+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~s-l~d~---------~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~ 63 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVT-DEDV---------KGKWSVFFFYPADFTFVCPTELEDLADKYAELKK 63 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEec-HHHH---------CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh
Confidence 56888899988763 22 22343 2233 4889999999 99999999999999999998864
No 85
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.53 E-value=1.2e-07 Score=64.68 Aligned_cols=56 Identities=21% Similarity=0.460 Sum_probs=44.6
Q ss_pred ccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcC
Q 033006 62 VEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 62 ~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~-WC~pC~~~~p~le~La~~y~~ 128 (129)
+|..+|+++..+..+ ..++. +++ .++++||.||++ ||+.|....+.|+++.++|++
T Consensus 1 vG~~~P~f~l~~~~g-~~~~l-~~l---------~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~ 57 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDG-KTVSL-SDL---------KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD 57 (124)
T ss_dssp TTSBGGCEEEETTTS-EEEEG-GGG---------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCcEeECCCC-CEEEH-HHH---------CCCcEEEEEeCccCccccccchhHHHHHhhhhcc
Confidence 577888888876543 34442 333 489999999999 999999999999999999874
No 86
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.52 E-value=1.3e-07 Score=69.21 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=45.3
Q ss_pred ccccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCC-ChhhhhhHHHHHHHHHHhc
Q 033006 58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASW-CRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 58 ~~~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~W-C~pC~~~~p~le~La~~y~ 127 (129)
....+|..+|+++.++..+ ..++.. +| .++++||+||++| |++|..+.|.|+++++++.
T Consensus 16 ~~~~~G~~~P~f~l~~~~g-~~v~l~-~~---------~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~ 75 (167)
T PRK00522 16 SLPQVGDKAPDFTLVANDL-SDVSLA-DF---------AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD 75 (167)
T ss_pred CCCCCCCCCCCeEEEcCCC-cEEehH-Hh---------CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC
Confidence 3456788899998776432 334322 23 4889999999999 9999999999999998874
No 87
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.51 E-value=9.5e-08 Score=75.49 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=30.4
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.++++||+|||+||++|+.++|.|++++++|+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg 196 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG 196 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC
Confidence 58999999999999999999999999999985
No 88
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.2e-07 Score=80.37 Aligned_cols=49 Identities=24% Similarity=0.589 Sum_probs=41.3
Q ss_pred cCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+.+++ .++|++.+ ..+..++|.||||||++|+.++|.+++.|....+
T Consensus 25 ~~Vl~Lt-~dnf~~~i----~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke 73 (493)
T KOG0190|consen 25 EDVLVLT-KDNFKETI----NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKE 73 (493)
T ss_pred cceEEEe-cccHHHHh----ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhc
Confidence 4455665 56899999 4688899999999999999999999999987654
No 89
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.50 E-value=1.2e-07 Score=61.05 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=25.9
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.|+|||+||++|+.+.|.+++++++++.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~ 29 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI 29 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC
Confidence 3789999999999999999999999875
No 90
>PTZ00102 disulphide isomerase; Provisional
Probab=98.49 E-value=2e-07 Score=77.28 Aligned_cols=46 Identities=22% Similarity=0.578 Sum_probs=38.7
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+..++ .++|+.++. .+++++|+|||+||++|+.+.|.++++++++.
T Consensus 34 v~~l~-~~~f~~~i~----~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~ 79 (477)
T PTZ00102 34 VTVLT-DSTFDKFIT----ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLK 79 (477)
T ss_pred cEEcc-hhhHHHHHh----cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHH
Confidence 44454 568988884 57899999999999999999999999998764
No 91
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.48 E-value=2e-07 Score=63.80 Aligned_cols=31 Identities=32% Similarity=0.923 Sum_probs=28.5
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
.+++++|+||++||++|+.+.|.++++++++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~ 49 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY 49 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhC
Confidence 4799999999999999999999999998764
No 92
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.48 E-value=3.4e-07 Score=66.70 Aligned_cols=56 Identities=18% Similarity=0.382 Sum_probs=41.3
Q ss_pred cccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 63 EALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 63 g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
|..+|+++..+..+ ..++ +.+. ..++++||+||++||+.|..+.+.|.++.++|++
T Consensus 1 g~~~p~f~l~~~~g-~~v~----l~~~-----~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~ 56 (171)
T cd02969 1 GSPAPDFSLPDTDG-KTYS----LADF-----ADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA 56 (171)
T ss_pred CCcCCCccccCCCC-CEEe----HHHH-----hCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh
Confidence 34567777666432 2232 2222 2589999999999999999999999999999974
No 93
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.47 E-value=3.1e-07 Score=58.17 Aligned_cols=38 Identities=32% Similarity=0.877 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 85 ~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
+|+..+. .+++++|.||++||+.|+.+.|.++++++++
T Consensus 2 ~~~~~~~----~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~ 39 (93)
T cd02947 2 EFEELIK----SAKPVVVDFWAPWCGPCKAIAPVLEELAEEY 39 (93)
T ss_pred chHHHHh----cCCcEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4666664 4599999999999999999999999998873
No 94
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.44 E-value=1.4e-07 Score=70.88 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=27.6
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHH
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAA 124 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~ 124 (129)
.||+.||+|||+||++|+..+|.+++|++
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~ 86 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKA 86 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHH
Confidence 59999999999999999999999999975
No 95
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.42 E-value=2.9e-07 Score=59.44 Aligned_cols=32 Identities=41% Similarity=0.896 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+++++++||++||++|+.+.|.+.++++++.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~ 63 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG 63 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC
Confidence 78999999999999999999999999999863
No 96
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.40 E-value=3.9e-07 Score=66.71 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=42.4
Q ss_pred ccccCCCCCCCCCcC---eeeeCChhHHHHHHHHhhhCCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcC
Q 033006 62 VEALWPDLSRPTSVE---LEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 62 ~g~~~P~~~~~~~~~---~~~i~s~~~f~~~l~~a~~~~k~vvV~F~-A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+|..+|+++.++..+ ...+. .+++ .++++||+|| ++||++|....|.|++++++|.+
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~-l~~~---------~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~ 61 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEIS-LSDY---------KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK 61 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEe-hHHh---------CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH
Confidence 466778887765432 12232 2222 4799999999 89999999999999999999864
No 97
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.39 E-value=6e-07 Score=63.35 Aligned_cols=57 Identities=14% Similarity=0.275 Sum_probs=41.9
Q ss_pred cccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCC-CcEEEEEe-CCCChhhhhhHHHHHHHHHHhcC
Q 033006 61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELS-QPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 61 ~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~-k~vvV~F~-A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+|..+|++...+..+ ..+. .+++ .+ +++||.|| ++||+.|....|.|++++++|++
T Consensus 2 ~~G~~~p~~~l~~~~g-~~v~-l~~~---------~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~ 60 (149)
T cd03018 2 EVGDKAPDFELPDQNG-QEVR-LSEF---------RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA 60 (149)
T ss_pred CCCCcCCCcEecCCCC-CEEe-HHHH---------cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh
Confidence 4577778887666432 3333 2223 25 88888887 99999999999999999999864
No 98
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.38 E-value=5e-07 Score=59.97 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=31.3
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
++++++.|+++||++|..+.|.|+++|++|+++
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~ 44 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK 44 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe
Confidence 789999999999999999999999999999864
No 99
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.36 E-value=6.4e-07 Score=63.93 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=30.6
Q ss_pred hHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHH
Q 033006 84 DHLDQILLRAQELSQPILIDWMASWCRKCIYLKPK 118 (129)
Q Consensus 84 ~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~ 118 (129)
.+|++.++.|...+|+|+|+|+++||++|+.|...
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKA 44 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHH
Confidence 36888888888899999999999999999988654
No 100
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.33 E-value=1.2e-06 Score=61.37 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCcEEE-EEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 97 SQPILI-DWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 97 ~k~vvV-~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
++++|| .||++||++|+...|.|.++.++|.+
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~ 55 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDA 55 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh
Confidence 455555 45699999999999999999999853
No 101
>PHA02125 thioredoxin-like protein
Probab=98.32 E-value=5.1e-07 Score=57.80 Aligned_cols=25 Identities=28% Similarity=0.685 Sum_probs=22.2
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~ 125 (129)
++.|||+||++|+.+.|.|+++..+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~~ 26 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEYT 26 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhhe
Confidence 7899999999999999999887543
No 102
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.30 E-value=9.1e-07 Score=56.36 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=26.4
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 100 ILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 100 vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.|.-||++||++|+.+.|.+++++++|++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~ 30 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD 30 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999998864
No 103
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.29 E-value=8.8e-07 Score=61.91 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=30.3
Q ss_pred CCCcEEEEEeCCCChh-hhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRK-CIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~p-C~~~~p~le~La~~y~~ 128 (129)
.++++||.||++||++ |....+.+.++.++|++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 4899999999999998 99999999999998864
No 104
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.27 E-value=9.9e-07 Score=62.27 Aligned_cols=27 Identities=22% Similarity=0.387 Sum_probs=23.1
Q ss_pred HHhhhCCCcEEEEEeCCCChhhhhhHH
Q 033006 91 LRAQELSQPILIDWMASWCRKCIYLKP 117 (129)
Q Consensus 91 ~~a~~~~k~vvV~F~A~WC~pC~~~~p 117 (129)
+.|...+|+|+|+|+|+||++|+.|.+
T Consensus 9 ~~Ak~~~KpVll~f~a~WC~~Ck~me~ 35 (124)
T cd02955 9 EKARREDKPIFLSIGYSTCHWCHVMEH 35 (124)
T ss_pred HHHHHcCCeEEEEEccCCCHhHHHHHH
Confidence 334468999999999999999999975
No 105
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.22 E-value=1.2e-06 Score=65.76 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=29.6
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
.|+++||+|||+||++|.+ .|.|++|+++|+++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~ 56 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ 56 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC
Confidence 4899999999999999975 88999999999753
No 106
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.21 E-value=1.6e-06 Score=65.15 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=45.3
Q ss_pred ccccccCCCCCCCCCc--CeeeeCChhHHHHHHHHhhhCCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcC
Q 033006 60 VRVEALWPDLSRPTSV--ELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 60 ~~~g~~~P~~~~~~~~--~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~-A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+.+|..+|+|+.+... ...+++. ++| .++++||+|| ++||++|..+.+.|.++.++|.+
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L-~d~---------~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~ 63 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTE-KDT---------EGRWSVFFFYPADFTFVCPTELGDVADHYEELQK 63 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEH-HHh---------CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh
Confidence 4578889999877642 2333332 222 4789999999 99999999999999999999864
No 107
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.20 E-value=2.6e-06 Score=60.79 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=43.1
Q ss_pred ccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcC
Q 033006 60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 60 ~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~-WC~pC~~~~p~le~La~~y~~ 128 (129)
..+|..+|+++..+..+ ..+. .+++ .++++||+||++ ||+.|....+.|.++.++|++
T Consensus 4 ~~~g~~~p~f~l~~~~G-~~~~-l~~~---------~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~ 62 (154)
T PRK09437 4 LKAGDIAPKFSLPDQDG-EQVS-LTDF---------QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK 62 (154)
T ss_pred CCCCCcCCCcEeeCCCC-CEEe-HHHh---------CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH
Confidence 45678888888776433 2333 2222 489999999987 677899999999999998864
No 108
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.20 E-value=2e-06 Score=56.39 Aligned_cols=32 Identities=38% Similarity=0.788 Sum_probs=29.9
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.+++++|.||++||++|+...+.+.++.++++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~ 49 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYK 49 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhC
Confidence 38999999999999999999999999999885
No 109
>PRK15000 peroxidase; Provisional
Probab=98.16 E-value=2.2e-06 Score=64.85 Aligned_cols=63 Identities=16% Similarity=0.136 Sum_probs=44.4
Q ss_pred cccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCC-CChhhhhhHHHHHHHHHHhcC
Q 033006 61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMAS-WCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 61 ~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~-WC~pC~~~~p~le~La~~y~~ 128 (129)
.+|..+|+++..+..+-.+..+.-++.+.. .++++||+||+. ||+.|..+.+.|.+++++|++
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~-----~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~ 66 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHT-----NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK 66 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHh-----CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 478889999876532201111112233322 489999999995 999999999999999999864
No 110
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.14 E-value=5.2e-06 Score=57.82 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=29.6
Q ss_pred CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~-A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++++||+|| +.||+.|..+.|.|.++.++|.+
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~ 55 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA 55 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH
Confidence 3899999999 58999999999999999988864
No 111
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.13 E-value=2.9e-06 Score=64.10 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=41.8
Q ss_pred cccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEE-EEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILI-DWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 61 ~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV-~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+|..+|+++..+..+ .++ ..++ .++.+|| +||++||+.|..+.+.|.++.++|++
T Consensus 3 ~vG~~aP~F~~~~~~g--~v~-l~d~---------~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~ 59 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG--PID-LSKY---------KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK 59 (202)
T ss_pred CCCCCCCCcEEecCCC--cEe-HHHh---------CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5788889998776433 232 2223 3676655 79999999999999999999999864
No 112
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.12 E-value=3.6e-06 Score=64.40 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=44.0
Q ss_pred cccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEE-EEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILI-DWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 59 ~~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV-~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
...+|..+|+++..+..+ ++...+.+ .++++|| +||++||+.|..+.+.|.+++++|.+
T Consensus 6 ~~~iG~~aPdF~l~~~~G--~~~l~~~~---------~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~ 65 (215)
T PRK13191 6 IPLIGEKFPEMEVITTHG--KIKLPDDY---------KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK 65 (215)
T ss_pred cccCCCcCCCCEeecCCC--CEEcHHHh---------CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 346899999998776543 23322222 3676555 89999999999999999999999864
No 113
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.11 E-value=3.6e-06 Score=64.42 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=43.3
Q ss_pred cccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 61 RVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 61 ~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~-vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
++|..+|+++..+..+ .+...+++ .+++ ||+.||++||++|..+.+.|.+++++|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G--~~~~~~~~---------~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~ 60 (215)
T PRK13599 3 LLGEKFPSMEVVTTQG--VKRLPEDY---------AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE 60 (215)
T ss_pred CCCCCCCCCEeECCCC--cEecHHHH---------CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 5788899998876544 22222333 3666 46799999999999999999999999864
No 114
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.06 E-value=6.2e-06 Score=65.06 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=46.1
Q ss_pred ccccccccccCCCCCCCCC--cCeeeeCChhHHHHHHHHhhhCCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcC
Q 033006 56 ARRDVRVEALWPDLSRPTS--VELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 56 ~~~~~~~g~~~P~~~~~~~--~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~-A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+...+|..+|+++..+. ....+++ +.+.. .++++|+.|| ++||++|..+.+.|.++.++|.+
T Consensus 64 ~~~~~~vGd~aPdF~l~~~~~g~~~~vs----Lsd~~-----kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~ 130 (261)
T PTZ00137 64 TVTSSLVGKLMPSFKGTALLNDDLVQFN----SSDYF-----KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE 130 (261)
T ss_pred ccccccCCCCCCCCEeecccCCCceEEe----HHHHc-----CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4455679999999987652 1222232 22222 4677888877 99999999999999999999864
No 115
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.03 E-value=4e-06 Score=67.58 Aligned_cols=42 Identities=36% Similarity=0.711 Sum_probs=36.7
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.++++.++. ...+|+|+|||+||+-.+.++|.|++.|..|+.
T Consensus 3 ~~N~~~il~----s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~ 44 (375)
T KOG0912|consen 3 SENIDSILD----SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQ 44 (375)
T ss_pred cccHHHhhc----cceEEeeeeehhhchHHHHHhHHHHHHHHHHHH
Confidence 457888884 689999999999999999999999999987754
No 116
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.03 E-value=5.4e-06 Score=51.24 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=24.9
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 100 ILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 100 vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
-|+.|+++||++|+.+.+.+++++++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~ 29 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP 29 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC
Confidence 3678999999999999999999987764
No 117
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=1.3e-06 Score=74.80 Aligned_cols=49 Identities=20% Similarity=0.579 Sum_probs=39.8
Q ss_pred cCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
..++++ +.++|+.++. ...+-.+|+||++|||.|+.++|.|+++|+...
T Consensus 39 D~ii~L-d~~tf~~~v~---~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~ 87 (606)
T KOG1731|consen 39 DPIIEL-DVDTFNAAVF---GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLE 87 (606)
T ss_pred CCeEEe-ehhhhHHHhc---ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHh
Confidence 344444 4778999886 455688999999999999999999999998653
No 118
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.00 E-value=9.3e-06 Score=56.87 Aligned_cols=40 Identities=5% Similarity=0.042 Sum_probs=31.4
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeC--CCCh---hhhhhHHHHHHH
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMA--SWCR---KCIYLKPKLEKL 122 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A--~WC~---pC~~~~p~le~L 122 (129)
+.++ .++|++++. ..+.+||.||| |||+ .|+.++|.+++.
T Consensus 4 v~L~-~~nF~~~v~----~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~a 48 (116)
T cd03007 4 VDLD-TVTFYKVIP----KFKYSLVKFDTAYPYGEKHEAFTRLAESSASA 48 (116)
T ss_pred eECC-hhhHHHHHh----cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhh
Confidence 4444 668999984 68999999999 9999 777777777553
No 119
>PRK13189 peroxiredoxin; Provisional
Probab=97.99 E-value=7.3e-06 Score=62.93 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=43.2
Q ss_pred ccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCC-cEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 60 VRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQ-PILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 60 ~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k-~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+|..+|+++.++..+ .+...+.+ .++ .+|++||++||+.|..+.+.|.+++++|.+
T Consensus 9 ~~vG~~aPdF~~~~~~g--~~~l~d~~---------~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~ 67 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHG--PIKLPDDY---------KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE 67 (222)
T ss_pred ccCCCcCCCcEeEcCCC--CEeeHHHh---------CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 46899999998886543 23222212 366 455688999999999999999999999864
No 120
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.98 E-value=1.2e-05 Score=55.96 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=29.5
Q ss_pred CCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhc
Q 033006 96 LSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 96 ~~k~vvV~F~-A~WC~pC~~~~p~le~La~~y~ 127 (129)
.++++||+|| +.||+.|....|.|.+++++|+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~ 53 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA 53 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH
Confidence 4899999999 7899999999999999999874
No 121
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.93 E-value=4.2e-06 Score=67.66 Aligned_cols=34 Identities=24% Similarity=0.635 Sum_probs=29.7
Q ss_pred hCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 95 ~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+..++|+||||||++|+.+.|++.++.-++++
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkd 74 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKD 74 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhh
Confidence 4578999999999999999999999998766653
No 122
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.89 E-value=6.3e-06 Score=60.50 Aligned_cols=33 Identities=21% Similarity=0.519 Sum_probs=29.4
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.||.|.++|.|.||+||+.+-|.+.++.++..+
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~ 64 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD 64 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHh
Confidence 489999999999999999999999998877543
No 123
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1.2e-05 Score=65.86 Aligned_cols=34 Identities=32% Similarity=0.739 Sum_probs=31.8
Q ss_pred hCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 95 ~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+++++|+||++||++|+.+.|.+++++..+.+
T Consensus 45 ~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~ 78 (383)
T KOG0191|consen 45 KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG 78 (383)
T ss_pred ccCCceEEEEECCCCcchhhhchHHHHHHHHhcC
Confidence 5789999999999999999999999999988875
No 124
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.88 E-value=2.3e-05 Score=59.49 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=26.3
Q ss_pred CCCcEEE-EEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 96 LSQPILI-DWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 96 ~~k~vvV-~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.++|+.| .||++||++|+.+.|.+++++.+++
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~ 163 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND 163 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC
Confidence 3555444 5999999999999999999998764
No 125
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.86 E-value=9.9e-06 Score=61.14 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=40.0
Q ss_pred ccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 62 VEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 62 ~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~-vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+|..+|+++..+..+ .++ ..++ ..+++ +|++||++||+.|..+.+.|.+++++|++
T Consensus 1 vG~~aP~F~~~~~~g--~~~-l~d~--------~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~ 57 (203)
T cd03016 1 LGDTAPNFEADTTHG--PIK-FHDY--------LGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK 57 (203)
T ss_pred CcCCCCCeEEecCCC--cEe-HHHH--------cCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH
Confidence 467788888776543 222 2222 22254 56699999999999999999999999864
No 126
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.74 E-value=3.1e-05 Score=58.74 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=26.2
Q ss_pred CCcEEEEEeC---CCChhhhhhHHHHHHHHHHhc
Q 033006 97 SQPILIDWMA---SWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 97 ~k~vvV~F~A---~WC~pC~~~~p~le~La~~y~ 127 (129)
+...++.|++ +||++|+.+.|.+++++++|+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~ 52 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP 52 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC
Confidence 3444666877 999999999999999999985
No 127
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.72 E-value=3.5e-05 Score=66.37 Aligned_cols=40 Identities=30% Similarity=0.649 Sum_probs=31.9
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHH
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKL 119 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~l 119 (129)
..+.+.+++++.+++ ..+|||+|||||+||-.||.+.+..
T Consensus 457 q~~s~~~~L~~~la~--~~~~pVmlDfyAdWCvtCK~~e~~t 496 (569)
T COG4232 457 QPISPLAELDQALAE--AKAKPVMLDFYADWCVTCKENEKYT 496 (569)
T ss_pred hccCCHHHHHHHHHh--CCCCcEEEeeehhHHHHhHhhhhhc
Confidence 566666688888874 3446999999999999999887653
No 128
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.68 E-value=6.1e-05 Score=56.53 Aligned_cols=60 Identities=8% Similarity=0.146 Sum_probs=43.7
Q ss_pred cccccccCCCCCCCCC---cCeeeeCChhHHHHHHHHhhhCCCcEEEEEeC-CCChhhhhhHHHHHHHHHHhcC
Q 033006 59 DVRVEALWPDLSRPTS---VELEPINDSDHLDQILLRAQELSQPILIDWMA-SWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 59 ~~~~g~~~P~~~~~~~---~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A-~WC~pC~~~~p~le~La~~y~~ 128 (129)
...+|..+|+++..+. .....++ ..++ .++++||+||+ .||+.|..+.+.|.+++++|.+
T Consensus 5 ~~~~G~~aPdF~~~~~~~~~~~~~v~-l~d~---------~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~ 68 (199)
T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKIS-LSSY---------KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE 68 (199)
T ss_pred ccccCCcCCCCEeeccccCCCCcEEe-HHHH---------CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 3568889999986542 1112332 2223 47899999995 8899999999999999999864
No 129
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=4.5e-05 Score=62.50 Aligned_cols=47 Identities=28% Similarity=0.606 Sum_probs=38.6
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+...+ .++|+..+. .....++|.||+|||++|+.+.|.+++++..+.
T Consensus 146 v~~l~-~~~~~~~~~---~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~ 192 (383)
T KOG0191|consen 146 VFELT-KDNFDETVK---DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLK 192 (383)
T ss_pred eEEcc-ccchhhhhh---ccCcceEEEEeccccHHhhhcChHHHHHHHHhc
Confidence 34444 556777665 568899999999999999999999999998775
No 130
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.65 E-value=6.9e-05 Score=51.19 Aligned_cols=33 Identities=9% Similarity=-0.038 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHH
Q 033006 85 HLDQILLRAQELSQPILIDWMASWCRKCIYLKP 117 (129)
Q Consensus 85 ~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p 117 (129)
+|++.++.|...+|+++|+|+++||++|+.|..
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~ 37 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNR 37 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHH
Confidence 577888888888999999999999999998864
No 131
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.43 E-value=8.4e-05 Score=46.46 Aligned_cols=26 Identities=31% Similarity=0.735 Sum_probs=22.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
|+.||++||++|+.+.+.|+++..+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~ 27 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAY 27 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCce
Confidence 57899999999999999999876554
No 132
>smart00594 UAS UAS domain.
Probab=97.40 E-value=0.00025 Score=49.27 Aligned_cols=35 Identities=6% Similarity=-0.018 Sum_probs=29.8
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHH
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKP 117 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p 117 (129)
...|++.++.|...+|+++|+|+++||+.|..+..
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r 47 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNR 47 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHH
Confidence 34688888888788999999999999999998753
No 133
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00018 Score=55.75 Aligned_cols=63 Identities=19% Similarity=0.400 Sum_probs=49.4
Q ss_pred ccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 64 ALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 64 ~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+|......+..++..++.+.+++.+. .+..+.++|.|+|.|.+.|+...|.|.+|+.+|..
T Consensus 113 ml~~eP~y~gpe~ikyf~~~q~~deel~--rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~ 175 (265)
T KOG0914|consen 113 MLAPEPAYSGPETIKYFTNMQLEDEELD--RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN 175 (265)
T ss_pred HhcCccccCCchheeeecchhhHHHHhc--cCCceEEEEEEEeecChhhcccccccHHHHHHhCC
Confidence 3445555555555667777777777775 35667899999999999999999999999999964
No 134
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.20 E-value=0.00052 Score=45.51 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=27.5
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+.+.+.-|+++||+.|....+.++++++++++
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~ 43 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNPN 43 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC
Confidence 44567789999999999999999999998753
No 135
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.14 E-value=0.0013 Score=46.19 Aligned_cols=47 Identities=19% Similarity=0.537 Sum_probs=34.4
Q ss_pred CChhHHHHHHHHhhhCCCcEEEEEeCC-------CChhhhhhHHHHHHHHHHhc
Q 033006 81 NDSDHLDQILLRAQELSQPILIDWMAS-------WCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 81 ~s~~~f~~~l~~a~~~~k~vvV~F~A~-------WC~pC~~~~p~le~La~~y~ 127 (129)
..-++|.+.+......+++++|.|+++ |||.|+...|.+++.-...+
T Consensus 3 ~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~ 56 (119)
T PF06110_consen 3 RGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP 56 (119)
T ss_dssp ECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S
T ss_pred cCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC
Confidence 345677787765446778999999975 99999999999998866543
No 136
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.96 E-value=0.00063 Score=43.18 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=21.9
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~ 125 (129)
|+.|+++||+.|+.+.+.|+++.-.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~ 25 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK 25 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC
Confidence 5789999999999999999987643
No 137
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.92 E-value=0.0011 Score=37.71 Aligned_cols=22 Identities=41% Similarity=0.908 Sum_probs=20.5
Q ss_pred EEEEeCCCChhhhhhHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKL 122 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~L 122 (129)
++.||++||+.|..+.+.++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~ 22 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL 22 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH
Confidence 5789999999999999999988
No 138
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.77 E-value=0.0014 Score=39.91 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.3
Q ss_pred EEEEeCCCChhhhhhHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKL 122 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~L 122 (129)
+..|+++||++|+.+.+.|++.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~ 23 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK 23 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC
Confidence 5679999999999999988864
No 139
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0012 Score=51.06 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=36.5
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
+..+...+.| +. ..++.+++.|||+||.+|.+|...++.+++..
T Consensus 3 v~~i~~~~~f---~~---~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~ 46 (227)
T KOG0911|consen 3 VQFIVFQEQF---LD---QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF 46 (227)
T ss_pred ceeehhHHHH---HH---hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh
Confidence 4566667777 32 36899999999999999999999999998765
No 140
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.62 E-value=0.0044 Score=43.92 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=23.8
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.....++.|..+|||.|....|.|.++++..+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p 71 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANP 71 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC
Confidence 45578899999999999999999999998764
No 141
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=96.59 E-value=0.0022 Score=46.35 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=39.0
Q ss_pred ccccCCCCCCCCCc--CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhh-HHHHHHHHHHhcC
Q 033006 62 VEALWPDLSRPTSV--ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYL-KPKLEKLAAEFDT 128 (129)
Q Consensus 62 ~g~~~P~~~~~~~~--~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~-~p~le~La~~y~~ 128 (129)
+|..+|+++.++.. ....++ +.+.+ ..+..||+.|.+.||+.|..+ .+.|.+..++|.+
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~----L~~~~----~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~ 62 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVN----LSELF----KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA 62 (155)
T ss_pred CCCcCCCeEeeeeccCCCceee----HHHHh----CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH
Confidence 46778898877642 123333 22222 223455556669999999998 9999999888753
No 142
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0062 Score=44.82 Aligned_cols=59 Identities=17% Similarity=0.327 Sum_probs=45.4
Q ss_pred cccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcC
Q 033006 59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 59 ~~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~-A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+.+|..+|+|+.++..+- .+. ..+| .+++|||+|| ..+++.|-.++-.|+....+|..
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~-~v~-Lsd~---------~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~ 62 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGE-TVS-LSDL---------RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK 62 (157)
T ss_pred cCCCCCcCCCeEeecCCCC-EEe-hHHh---------cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh
Confidence 3578999999999986542 233 2233 4889999999 88999999999889888887754
No 143
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.25 E-value=0.0052 Score=45.48 Aligned_cols=29 Identities=28% Similarity=0.645 Sum_probs=19.8
Q ss_pred HHHHHhhhCCCcEEEEEeCCCChhhhhhH
Q 033006 88 QILLRAQELSQPILIDWMASWCRKCIYLK 116 (129)
Q Consensus 88 ~~l~~a~~~~k~vvV~F~A~WC~pC~~~~ 116 (129)
+.++.|...+|||+|+++++||+-|+.|.
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~ 56 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVME 56 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhc
Confidence 34444457899999999999999999886
No 144
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.02 E-value=0.011 Score=46.08 Aligned_cols=66 Identities=9% Similarity=0.192 Sum_probs=50.3
Q ss_pred cccccccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 55 SARRDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 55 ~~~~~~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+..+.+..|-.+|++...+..+-... .+-+.. +.++|+||+|.+--|||-+.-.+.|++++++|.+
T Consensus 68 dl~~~a~~G~~APns~vv~l~g~~~~----~ildf~----~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 68 DLFKEAKLGGPAPNSPVVTLDGQRSC----RILDFA----KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred HcccceeCCCCCCCCceEeeCCCcce----eHHHhc----cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 34567788888988877665432211 233333 5799999999999999999999999999999986
No 145
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.00 E-value=0.0078 Score=38.89 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.1
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 100 ILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 100 vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
-|+.|+.+||+.|+.....|+++..++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~ 28 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER 28 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc
Confidence 478899999999999999999987665
No 146
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.90 E-value=0.005 Score=38.89 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.5
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
|+.|+++|||.|+.+.+.|+++..+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~ 27 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKP 27 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCc
Confidence 57899999999999999999886554
No 147
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.033 Score=39.42 Aligned_cols=46 Identities=17% Similarity=0.492 Sum_probs=35.2
Q ss_pred CChhHHHHHHHHhhhCCCcEEEEEeC--------CCChhhhhhHHHHHHHHHHhc
Q 033006 81 NDSDHLDQILLRAQELSQPILIDWMA--------SWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 81 ~s~~~f~~~l~~a~~~~k~vvV~F~A--------~WC~pC~~~~p~le~La~~y~ 127 (129)
...+.|++.+... .+++-++|.|++ +|||.|.+-.|.+.+.-++.+
T Consensus 10 ~g~e~~~~~~~~~-~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap 63 (128)
T KOG3425|consen 10 PGYESFEETLKNV-ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP 63 (128)
T ss_pred chHHHHHHHHHHH-hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC
Confidence 4456787777654 356669999997 599999999999998876554
No 148
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.70 E-value=0.0016 Score=50.74 Aligned_cols=39 Identities=31% Similarity=0.637 Sum_probs=32.4
Q ss_pred eeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHH
Q 033006 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLA 123 (129)
Q Consensus 79 ~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La 123 (129)
...+.+++..++. .-.++.|+|+||+.|....|.++.++
T Consensus 27 ~~~~eenw~~~l~------gewmi~~~ap~~psc~~~~~~~~~~a 65 (248)
T KOG0913|consen 27 TRIDEENWKELLT------GEWMIEFGAPWCPSCSDLIPHLENFA 65 (248)
T ss_pred EEecccchhhhhc------hHHHHHhcCCCCccccchHHHHhccC
Confidence 3445779999883 44789999999999999999999876
No 149
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=95.58 E-value=0.017 Score=45.75 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=38.4
Q ss_pred cCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+.+|.+.+.|-+++... ..+..|||.||-+-++.|..|...|..||.+|+.
T Consensus 125 G~v~ei~~~e~~l~~ie~~-~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~ 177 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKE-SKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE 177 (265)
T ss_dssp -SEEE--SHHHHHHHCCTS-STT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT
T ss_pred ceEEEccChhhHHHHHhcc-CCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc
Confidence 4567888877787776421 2345799999999999999999999999999975
No 150
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.45 E-value=0.019 Score=34.76 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=19.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLA 123 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La 123 (129)
++.|+++||++|..+...|++..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~ 24 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERG 24 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCC
Confidence 57899999999999998887653
No 151
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.38 E-value=0.026 Score=40.44 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=30.1
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.+++.|+.|+-..||.|+.+.+.+.++.+++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 478899999999999999999999999988765
No 152
>PF13728 TraF: F plasmid transfer operon protein
Probab=95.19 E-value=0.049 Score=41.70 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=32.4
Q ss_pred HHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 87 DQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 87 ~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+.+|... .++.-|+.||.+.|+.|..+.|++..++++|+
T Consensus 112 ~~~l~~l--a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg 150 (215)
T PF13728_consen 112 DKALKQL--AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG 150 (215)
T ss_pred HHHHHHH--hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC
Confidence 3445432 37778999999999999999999999999985
No 153
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.11 E-value=0.091 Score=36.21 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=35.9
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
+++++.++|+++++. +.++|++|.=.++.|+-.......|++...+.++
T Consensus 2 ~~L~t~eql~~i~~~--S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~ 50 (105)
T PF11009_consen 2 KPLTTEEQLEEILEE--SKEKPVLIFKHSTRCPISAMALREFEKFWEESPD 50 (105)
T ss_dssp -E--SHHHHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-
T ss_pred CccCCHHHHHHHHHh--cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc
Confidence 578899999999974 4689999999999999999999999998877654
No 154
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.79 E-value=0.037 Score=33.18 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=20.9
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~ 125 (129)
|+.|.++||+.|+.....|++..-+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~ 26 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIE 26 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCc
Confidence 5678999999999999999876533
No 155
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.68 E-value=0.072 Score=37.44 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=27.5
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
..+++|+.|+..-|++|..+.+.+.++-++|
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~ 41 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKY 41 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhc
Confidence 4678899999999999999999999999988
No 156
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=94.16 E-value=0.062 Score=42.27 Aligned_cols=31 Identities=6% Similarity=-0.075 Sum_probs=28.7
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
++.-|+.||.+-|+.|.++.|+++.++++|+
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg 173 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG 173 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC
Confidence 5578999999999999999999999999985
No 157
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=93.88 E-value=0.052 Score=35.33 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~ 125 (129)
|+.|..+||+.|......|+++..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~ 26 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIE 26 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcc
Confidence 6789999999999999999988543
No 158
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=93.51 E-value=0.43 Score=34.24 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=37.5
Q ss_pred eeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 79 ~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.+.+.-..++++.. ..+++|||.|.-+|-+.|.+|...|.+++++.+
T Consensus 4 ~L~s~~~VDqAI~~--e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~ 50 (133)
T PF02966_consen 4 HLHSGWHVDQAILS--EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK 50 (133)
T ss_dssp EE-SHHHHHHHHHH---SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT
T ss_pred ccCccchHHHHHhc--cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh
Confidence 46667778887663 678999999999999999999999999998754
No 159
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=93.35 E-value=0.1 Score=36.18 Aligned_cols=31 Identities=16% Similarity=0.046 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhCCCcEEEEEeCC----CChhhhhh
Q 033006 85 HLDQILLRAQELSQPILIDWMAS----WCRKCIYL 115 (129)
Q Consensus 85 ~f~~~l~~a~~~~k~vvV~F~A~----WC~pC~~~ 115 (129)
.|.+.++.|.++.|.++|+|+++ ||..|+..
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~ 39 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNT 39 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHH
Confidence 46777777778999999999999 99999765
No 160
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=93.35 E-value=0.19 Score=39.68 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=28.8
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
++.-|+.||.+-|+.|.++.|+++.++++|+
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg 180 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG 180 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC
Confidence 5678999999999999999999999999985
No 161
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=93.23 E-value=0.14 Score=30.67 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLA 123 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La 123 (129)
|+.|+.+||+.|+.....|++..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~ 23 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKG 23 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTT
T ss_pred cEEEEcCCCcCHHHHHHHHHHcC
Confidence 57899999999999998887654
No 162
>PHA03050 glutaredoxin; Provisional
Probab=92.35 E-value=0.26 Score=33.73 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=21.3
Q ss_pred EEEEEeCCCChhhhhhHHHHHHHHH
Q 033006 100 ILIDWMASWCRKCIYLKPKLEKLAA 124 (129)
Q Consensus 100 vvV~F~A~WC~pC~~~~p~le~La~ 124 (129)
-|+.|..+|||.|+.....|+++.-
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i 38 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSF 38 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC
Confidence 3778999999999999999887643
No 163
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.34 E-value=0.11 Score=33.11 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHH
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~La~~ 125 (129)
.+.-|+.|..+||+.|+.....|++..-+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 44457789999999999999888865433
No 164
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=91.98 E-value=0.37 Score=34.54 Aligned_cols=47 Identities=17% Similarity=0.398 Sum_probs=38.6
Q ss_pred eeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 79 PINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 79 ~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.+++....++.+.. ...++|||.|.-.|-+.|..|...|++.++...
T Consensus 7 ~L~s~~~VdqaI~~--t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs 53 (142)
T KOG3414|consen 7 TLHSGWEVDQAILS--TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS 53 (142)
T ss_pred ccccHHHHHHHHhc--ccceEEEEEecCCCCchHhhHHHHHHHHHHHHh
Confidence 45666677776653 568999999999999999999999999987654
No 165
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=91.78 E-value=0.094 Score=33.02 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~ 125 (129)
|+.|+.+||+.|......|++..-+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~ 25 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVT 25 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCC
Confidence 4578899999999999998876433
No 166
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.52 E-value=0.13 Score=34.48 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~ 125 (129)
|+.|..+|||.|+.....|+++.-.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~i~ 34 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLGVN 34 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC
Confidence 6678999999999999888876443
No 167
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=91.19 E-value=0.24 Score=37.18 Aligned_cols=32 Identities=9% Similarity=0.531 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCCChhhhhhHHHH---HHHHHHhcC
Q 033006 97 SQPILIDWMASWCRKCIYLKPKL---EKLAAEFDT 128 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~l---e~La~~y~~ 128 (129)
+++.||+|+.--||+|..+.+.+ +.+.+.+++
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 67889999999999999999876 788887764
No 168
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.05 E-value=0.28 Score=32.79 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCcEEEEEe----CCCChhhhhhHHHHHHHHHHh
Q 033006 97 SQPILIDWM----ASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 97 ~k~vvV~F~----A~WC~pC~~~~p~le~La~~y 126 (129)
..+|+|.-. ++|||.|......|+++.-.|
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~ 44 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPF 44 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCE
Confidence 566666654 389999999998888764333
No 169
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.35 E-value=0.2 Score=32.75 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=21.8
Q ss_pred CCcEEEEEeC----CCChhhhhhHHHHHHHHHHh
Q 033006 97 SQPILIDWMA----SWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 97 ~k~vvV~F~A----~WC~pC~~~~p~le~La~~y 126 (129)
+.+|+|.-.. +||+.|+.....|++..-.|
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y 40 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDF 40 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCe
Confidence 5666665443 79999999998888765443
No 170
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=89.73 E-value=0.23 Score=30.62 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.5
Q ss_pred EEEEeCCCChhhhhhHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLA 123 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La 123 (129)
|+.|..+||+.|......|++..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~ 24 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKG 24 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC
Confidence 56789999999999998887654
No 171
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=89.59 E-value=0.94 Score=34.69 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=41.1
Q ss_pred cCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
....+|.+..+|-+... ...-||+.||-+--..|+.|...|+.||+.|-+
T Consensus 66 G~y~ev~~Ekdf~~~~~----kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e 115 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVK----KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE 115 (211)
T ss_pred ceEEEeccHHHHHHHhh----cCceEEEEEEcCCCcceehHHHHHHHHHHhccc
Confidence 45678887777766653 467799999999999999999999999998753
No 172
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=89.33 E-value=0.64 Score=29.33 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.4
Q ss_pred EEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 103 DWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 103 ~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.+++++|+.|..+...+++++.+++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~ 28 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG 28 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC
Confidence 3468889999999999999998874
No 173
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=89.08 E-value=1.6 Score=28.00 Aligned_cols=43 Identities=12% Similarity=0.264 Sum_probs=33.6
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
..+++.++++.++ ....++||-|+.+++. .+...|.++|+.+.
T Consensus 2 ~~i~s~~~l~~~~----~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r 44 (97)
T cd02981 2 KELTSKEELEKFL----DKDDVVVVGFFKDEES---EEYKTFEKVAESLR 44 (97)
T ss_pred eecCCHHHHHHHh----ccCCeEEEEEECCCCc---HHHHHHHHHHHhcc
Confidence 4677787888776 4688899999999987 46678888887775
No 174
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=88.84 E-value=0.3 Score=30.36 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=19.6
Q ss_pred EEEEeCCCChhhhhhHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLA 123 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La 123 (129)
|+.|..+||+.|+.....|++..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~g 25 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKG 25 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCC
Confidence 56788999999999998888754
No 175
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=87.86 E-value=0.62 Score=34.51 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=23.4
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHH
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEK 121 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~ 121 (129)
++++.|+.|.-+.|+.|+.+.+.+++
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 46889999999999999999998876
No 176
>PRK10824 glutaredoxin-4; Provisional
Probab=87.81 E-value=0.57 Score=32.65 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=21.6
Q ss_pred CCcEEEEEeC----CCChhhhhhHHHHHHHHHHh
Q 033006 97 SQPILIDWMA----SWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 97 ~k~vvV~F~A----~WC~pC~~~~p~le~La~~y 126 (129)
..+|||.--. ||||.|+.....|.++...|
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~ 47 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERF 47 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCc
Confidence 5666665444 69999999998888765443
No 177
>PRK10329 glutaredoxin-like protein; Provisional
Probab=87.71 E-value=0.75 Score=29.65 Aligned_cols=24 Identities=17% Similarity=0.255 Sum_probs=20.0
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAA 124 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~ 124 (129)
|..|..+||+.|......|++..-
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~gI 26 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESRGF 26 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHCCC
Confidence 567889999999999988887543
No 178
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=87.64 E-value=0.44 Score=29.44 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=20.9
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
|+.|..+||+.|......|++..-.|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~~i~~ 28 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQENGISY 28 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 57789999999999998888754333
No 179
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=86.70 E-value=2.2 Score=33.04 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=42.1
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.|.+|...+-..++..+ ..+-.|||..|..--+.|.-+...|+.||.+|+.
T Consensus 92 ~V~~ISg~dyv~EVT~A--s~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~ 142 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKA--SEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ 142 (240)
T ss_pred ceeeccchHHHHHHHhc--cCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc
Confidence 46677777655555543 5688999999999999999999999999999975
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=85.61 E-value=0.47 Score=29.44 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHH
Q 033006 102 IDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 102 V~F~A~WC~pC~~~~p~le~La~~ 125 (129)
..|..++|+.|+.....|++..-.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i~ 25 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGIA 25 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCc
Confidence 568889999999999998875433
No 181
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=83.34 E-value=1.8 Score=33.38 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=25.3
Q ss_pred hCCCcEEEEEeCCCChhhhhhHHHHHHHH
Q 033006 95 ELSQPILIDWMASWCRKCIYLKPKLEKLA 123 (129)
Q Consensus 95 ~~~k~vvV~F~A~WC~pC~~~~p~le~La 123 (129)
.+++.+|+.|.-+.||-|+.+.+.++++-
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~ 133 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYN 133 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHh
Confidence 35678899999999999999999988774
No 182
>PRK10638 glutaredoxin 3; Provisional
Probab=82.16 E-value=1 Score=28.63 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
|+.|..+||+.|+.....|++..-.|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~gi~y 29 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKGVSF 29 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCCc
Confidence 55778899999999998888754333
No 183
>PTZ00062 glutaredoxin; Provisional
Probab=77.85 E-value=2.7 Score=32.00 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=21.1
Q ss_pred CCcEEEEEe----CCCChhhhhhHHHHHHHHHH
Q 033006 97 SQPILIDWM----ASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 97 ~k~vvV~F~----A~WC~pC~~~~p~le~La~~ 125 (129)
..+|+|.-- +|||+.|+.....|++..-.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~ 144 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVK 144 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCC
Confidence 566666544 37999999999888875433
No 184
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=74.93 E-value=4.4 Score=31.56 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=24.4
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHH
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAA 124 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~ 124 (129)
+++.+|+.|.=+.||.|+.+.+.+.++.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 45678999999999999999988877644
No 185
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=74.38 E-value=2.3 Score=27.29 Aligned_cols=26 Identities=15% Similarity=0.356 Sum_probs=21.1
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
++.|.-++||.|+.....|++..-+|
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~ 28 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDY 28 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCc
Confidence 56788999999999998888764444
No 186
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=72.65 E-value=8.1 Score=32.89 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=27.0
Q ss_pred CCCcE-EEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 96 LSQPI-LIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 96 ~~k~v-vV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
-++|+ +..|.++.|+.|......+++++.+.+
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~ 146 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP 146 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC
Confidence 34554 788999999999999999999998765
No 187
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=71.89 E-value=8.9 Score=33.06 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=27.0
Q ss_pred hCCCcEEE-EEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 95 ELSQPILI-DWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 95 ~~~k~vvV-~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.-++++-| .|.+++|+.|......+++++.+.+
T Consensus 473 ~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~ 506 (555)
T TIGR03143 473 KITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP 506 (555)
T ss_pred hcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC
Confidence 34677655 5589999999999999999998875
No 188
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=70.45 E-value=3.9 Score=31.16 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=42.0
Q ss_pred ccccccCCCCCCCCCc-C--eeeeCChhHHHHHHHHhhhCCCcEEEEEe-CCCChhhhhhHHHHHHHHHHhcC
Q 033006 60 VRVEALWPDLSRPTSV-E--LEPINDSDHLDQILLRAQELSQPILIDWM-ASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 60 ~~~g~~~P~~~~~~~~-~--~~~i~s~~~f~~~l~~a~~~~k~vvV~F~-A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+|..+|+++..+.. + ..+++..+. .++.+|+.|| ++--+-|-.+...|.+++.+|+.
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~----------~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~ 65 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDY----------YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK 65 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhh----------cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH
Confidence 4688899999877652 2 234543332 2588888888 77778888888888888888764
No 189
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=69.04 E-value=5.9 Score=27.07 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=19.5
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHH
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKL 122 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~L 122 (129)
..+ ||.|.-+||+.|..+.-.|.++
T Consensus 13 ~~~-VVifSKs~C~~c~~~k~ll~~~ 37 (104)
T KOG1752|consen 13 ENP-VVIFSKSSCPYCHRAKELLSDL 37 (104)
T ss_pred cCC-EEEEECCcCchHHHHHHHHHhC
Confidence 444 4568999999999988777763
No 190
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=62.24 E-value=11 Score=29.83 Aligned_cols=32 Identities=19% Similarity=0.066 Sum_probs=23.9
Q ss_pred hCCCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 95 ~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
.+||+.|+...+.|||-|....=.|--.-.+|
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrf 87 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRF 87 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhc
Confidence 57999999999999999987754443333333
No 191
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.58 E-value=9.5 Score=34.14 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=24.2
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhH
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLK 116 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~ 116 (129)
.+.|...- ..+|||+|..-.+||.=|..|.
T Consensus 33 ~eAf~~A~----~edkPIflSIGys~CHWChVM~ 62 (667)
T COG1331 33 EEAFAKAK----EEDKPILLSIGYSTCHWCHVMA 62 (667)
T ss_pred HHHHHHHH----HhCCCEEEEeccccccchHHHh
Confidence 44555544 6799999999999999999874
No 192
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=60.53 E-value=13 Score=27.17 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=25.5
Q ss_pred CCCcEEEEEeCCCC-hhhhhhHHHHHHHHHHhc
Q 033006 96 LSQPILIDWMASWC-RKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 96 ~~k~vvV~F~A~WC-~pC~~~~p~le~La~~y~ 127 (129)
.|+++||.|.=+.| ..|-.+...+.++.++.+
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~ 83 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLG 83 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhh
Confidence 59999999999999 589888888888776654
No 193
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=58.05 E-value=17 Score=24.96 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=27.9
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
.|+++||.=-|+-|+--. -...|++|.++|++
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~ 51 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD 51 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhc
Confidence 589999999999999888 66689999999975
No 194
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=56.18 E-value=32 Score=24.15 Aligned_cols=48 Identities=17% Similarity=0.350 Sum_probs=35.9
Q ss_pred eeeeCChhHHHHHHHHhhhCCCc-EEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 77 LEPINDSDHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~-vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
+.+++ .+++..+. ..+++ +++.|...-......+...++.+|+++.++
T Consensus 79 v~~~t-~~n~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 127 (184)
T PF13848_consen 79 VPELT-PENFEKLF----SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK 127 (184)
T ss_dssp CEEES-TTHHHHHH----STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT
T ss_pred ccccc-hhhHHHHh----cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe
Confidence 34454 55788877 45655 777777777778889999999999998774
No 195
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=51.33 E-value=34 Score=29.11 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=26.4
Q ss_pred CCc-EEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 97 SQP-ILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 97 ~k~-vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+++ -+..|.++-|+.|......+++++.+++
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p 147 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP 147 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 445 5788999999999999999999988765
No 196
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.51 E-value=23 Score=26.65 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=24.9
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
..+.++.|.-.-|+.|+...|.+++....++
T Consensus 84 ~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 84 APVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred CCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 3778889999999999888888888655544
No 197
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.47 E-value=11 Score=24.68 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
.+| +.|++--||.|......|+++.-.|
T Consensus 2 skp--~lfgsn~Cpdca~a~eyl~rl~v~y 29 (85)
T COG4545 2 SKP--KLFGSNLCPDCAPAVEYLERLNVDY 29 (85)
T ss_pred CCc--eeeccccCcchHHHHHHHHHcCCCc
Confidence 355 6799999999999998888876554
No 198
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=47.16 E-value=24 Score=27.68 Aligned_cols=33 Identities=18% Similarity=0.475 Sum_probs=28.8
Q ss_pred hCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 95 ELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 95 ~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
..|+++||-+.-.+|..|..-+..|+.|..++.
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~ 56 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLE 56 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999998899999886654
No 199
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=46.45 E-value=37 Score=26.69 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=42.2
Q ss_pred cCeeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 75 VELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 75 ~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
.-|.++++-.+|-+.+... .....++|..|-+--+.|.++.-.+.=||.+|+
T Consensus 138 ~~V~El~~gkqfld~idke-~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP 189 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKE-LKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP 189 (273)
T ss_pred ceEEEeccchhHHHHHhcc-cceEEEEEEEecCCCchHHHHhhhHHHhhccCC
Confidence 3478888888888877521 123468889999999999999999999999997
No 200
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=45.66 E-value=77 Score=20.82 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=29.5
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+.++++.++++.++. ..+++||-|+..--. .+...|.++|..+.
T Consensus 2 ~~~i~s~~~l~~f~~----~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R 45 (104)
T cd03069 2 SVELRTEAEFEKFLS----DDDASVVGFFEDEDS---KLLSEFLKAADTLR 45 (104)
T ss_pred ccccCCHHHHHHHhc----cCCcEEEEEEcCCCc---hHHHHHHHHHHhhh
Confidence 356778888888774 566777777665433 45667777777764
No 201
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=43.91 E-value=89 Score=20.32 Aligned_cols=44 Identities=25% Similarity=0.216 Sum_probs=29.9
Q ss_pred eeeeCChhHHHHHHHHhhh-CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 77 LEPINDSDHLDQILLRAQE-LSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~-~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+..|++.++++.++ . .+.++||-|+..-=. .+...|.++|..+.
T Consensus 2 v~~i~~~~~~e~~~----~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R 46 (102)
T cd03066 2 VEIINSERELQAFE----NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFH 46 (102)
T ss_pred ceEcCCHHHHHHHh----cccCCeEEEEEECCCCC---HHHHHHHHHHHhhh
Confidence 45778888888888 4 466777766665433 35567778877763
No 202
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=42.35 E-value=34 Score=25.31 Aligned_cols=33 Identities=27% Similarity=0.205 Sum_probs=27.0
Q ss_pred CCCcEEEEEeCCCChhhhhhHHHHHHHHHHhcCC
Q 033006 96 LSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~~k 129 (129)
.+++++|.=.|+-|+---+ -.-||.|.++|+++
T Consensus 24 ~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~ 56 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDK 56 (162)
T ss_pred CCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhC
Confidence 5999999999999997665 34688888998875
No 203
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=41.86 E-value=17 Score=21.91 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=16.8
Q ss_pred EEEeCCCChhhhhhHHHHHHHH
Q 033006 102 IDWMASWCRKCIYLKPKLEKLA 123 (129)
Q Consensus 102 V~F~A~WC~pC~~~~p~le~La 123 (129)
+.|+.+||+.|....-.+++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~g 23 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAG 23 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcC
Confidence 3567899999998887777553
No 204
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=40.32 E-value=50 Score=28.10 Aligned_cols=40 Identities=30% Similarity=0.226 Sum_probs=31.7
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHH
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~ 125 (129)
.+++.+++. +-.++|-+.++.+-|..|..+...++++++-
T Consensus 7 ~~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (517)
T PRK15317 7 KTQLKQYLE---LLERPIELVASLDDSEKSAELKELLEEIASL 46 (517)
T ss_pred HHHHHHHHH---hCCCCEEEEEEeCCCchHHHHHHHHHHHHHh
Confidence 345666776 5678887877777899999999999999864
No 205
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=40.09 E-value=19 Score=22.71 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEeCCCChhhhhhHHHHHHHHH
Q 033006 101 LIDWMASWCRKCIYLKPKLEKLAA 124 (129)
Q Consensus 101 vV~F~A~WC~pC~~~~p~le~La~ 124 (129)
|+.|..+-|+-|......++++..
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~ 25 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA 25 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh
Confidence 678999999999999999987653
No 206
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=38.35 E-value=1.2e+02 Score=20.19 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=29.5
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHHhc
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~y~ 127 (129)
+..|++.++++.++. ..+.++||-|+..--. .+...|.++|..+.
T Consensus 2 v~~i~s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~R 46 (107)
T cd03068 2 SKQLQTLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLR 46 (107)
T ss_pred ceEcCCHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhcc
Confidence 467888888988874 3326666666655433 45667778887764
No 207
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=37.34 E-value=1.2e+02 Score=19.98 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=26.7
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHH
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAA 124 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~ 124 (129)
.+++.++++ +-.+||.+.++.+--..|..+...++++++
T Consensus 7 ~~qL~~~f~---~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~ 45 (94)
T cd02974 7 KQQLKAYLE---RLENPVELVASLDDSEKSAELLELLEEIAS 45 (94)
T ss_pred HHHHHHHHH---hCCCCEEEEEEeCCCcchHHHHHHHHHHHH
Confidence 345666665 456777665554333899999989888876
No 208
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=37.18 E-value=46 Score=25.23 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=25.0
Q ss_pred cccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEe
Q 033006 59 DVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM 105 (129)
Q Consensus 59 ~~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~ 105 (129)
...+|...||++.++..+ ..|. +..+ ..+++||+.||
T Consensus 62 ~v~~Gd~iPD~tL~dedg-~sis----Lkki-----t~nk~vV~f~Y 98 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDG-KSIS----LKKI-----TGNKPVVLFFY 98 (211)
T ss_pred eeecCCcCCCcccccCCC-Ceee----eeee-----cCCCcEEEEEe
Confidence 678899999999987543 2222 2222 24668999998
No 209
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=34.22 E-value=33 Score=20.80 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=17.3
Q ss_pred EEEeCCCChhhhhhHHHHHHHHH
Q 033006 102 IDWMASWCRKCIYLKPKLEKLAA 124 (129)
Q Consensus 102 V~F~A~WC~pC~~~~p~le~La~ 124 (129)
..|+.+.|+.|+...-.+++..-
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~gi 25 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHGI 25 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCCC
Confidence 45677889999998877776543
No 210
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=33.47 E-value=11 Score=30.72 Aligned_cols=30 Identities=20% Similarity=0.490 Sum_probs=22.7
Q ss_pred CCcEEEEEeCCCChhhhhhHHHHHHHHHHh
Q 033006 97 SQPILIDWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 97 ~k~vvV~F~A~WC~pC~~~~p~le~La~~y 126 (129)
.-.|-+.||++||+..+.+.|.++-...-|
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~ 105 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLF 105 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhc
Confidence 557888999999998887777766555444
No 211
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=33.08 E-value=21 Score=20.12 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=17.0
Q ss_pred EEeCCCChhhhhhHHHHHHHHHH
Q 033006 103 DWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 103 ~F~A~WC~pC~~~~p~le~La~~ 125 (129)
.|+.++|+.|....-.++...-.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~ 25 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP 25 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC
Confidence 46778899999888777765433
No 212
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=32.81 E-value=24 Score=22.53 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=8.5
Q ss_pred cchhHHHHHHh
Q 033006 7 KSSILYQELHR 17 (129)
Q Consensus 7 ~~~~~~~~~~~ 17 (129)
||||||--+-.
T Consensus 10 nPHFl~NtLn~ 20 (82)
T PF06580_consen 10 NPHFLFNTLNS 20 (82)
T ss_pred ChHHHHHHHHH
Confidence 79999977654
No 213
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=32.23 E-value=25 Score=20.71 Aligned_cols=21 Identities=5% Similarity=-0.149 Sum_probs=15.9
Q ss_pred EEeCCCChhhhhhHHHHHHHH
Q 033006 103 DWMASWCRKCIYLKPKLEKLA 123 (129)
Q Consensus 103 ~F~A~WC~pC~~~~p~le~La 123 (129)
.|+.++|+.|+...-.++...
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~ 23 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKG 23 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcC
Confidence 466788999988887776553
No 214
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=30.33 E-value=1.1e+02 Score=22.60 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.3
Q ss_pred eeCChhHHHHHHHHhhhCCCcEEEEEeCC
Q 033006 79 PINDSDHLDQILLRAQELSQPILIDWMAS 107 (129)
Q Consensus 79 ~i~s~~~f~~~l~~a~~~~k~vvV~F~A~ 107 (129)
.+.+.+++++.+.++...+.|.||++..+
T Consensus 156 ~v~~~~el~~al~~al~~~gp~vIev~~~ 184 (193)
T cd03375 156 FSGDIKQLKEIIKKAIQHKGFSFVEVLSP 184 (193)
T ss_pred ecCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 46788889998888877889999999844
No 215
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=30.17 E-value=90 Score=26.56 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=30.6
Q ss_pred hhHHHHHHHHhhhCCCcEEEEEeCCCChhhhhhHHHHHHHHHH
Q 033006 83 SDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 83 ~~~f~~~l~~a~~~~k~vvV~F~A~WC~pC~~~~p~le~La~~ 125 (129)
.+++.+++. +-.++|.|.++.+-|..|..+...++++++-
T Consensus 7 ~~~l~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (515)
T TIGR03140 7 LAQLKSYLA---SLENPVTLVLSAGSHEKSKELLELLDEIASL 46 (515)
T ss_pred HHHHHHHHH---hcCCCEEEEEEeCCCchhHHHHHHHHHHHHh
Confidence 345667776 5677887777766799999999999988763
No 216
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=29.94 E-value=59 Score=23.73 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=19.7
Q ss_pred cEEEEEeCCCChhhhhhHHHHHH
Q 033006 99 PILIDWMASWCRKCIYLKPKLEK 121 (129)
Q Consensus 99 ~vvV~F~A~WC~pC~~~~p~le~ 121 (129)
.-++.|+.|.||=|.....+++.
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~ 48 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA 48 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh
Confidence 35778999999999999988874
No 217
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=29.65 E-value=34 Score=20.26 Aligned_cols=24 Identities=4% Similarity=-0.181 Sum_probs=17.2
Q ss_pred EEEeCCCChhhhhhHHHHHHHHHH
Q 033006 102 IDWMASWCRKCIYLKPKLEKLAAE 125 (129)
Q Consensus 102 V~F~A~WC~pC~~~~p~le~La~~ 125 (129)
..|+.++|+.|....-.+++..-.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~ 25 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS 25 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc
Confidence 346778899999888777765433
No 218
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=29.54 E-value=1.1e+02 Score=22.11 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.5
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeCCC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMASW 108 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~W 108 (129)
...+++.+++++.+..+.+.++|+||++..+.
T Consensus 144 ~~~v~~~~el~~al~~a~~~~~p~liev~~~~ 175 (186)
T cd02015 144 GLRVEKPEELEAALKEALASDGPVLLDVLVDP 175 (186)
T ss_pred eEEeCCHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 46788899999999888777899999998753
No 219
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=29.08 E-value=96 Score=23.74 Aligned_cols=59 Identities=24% Similarity=0.357 Sum_probs=42.1
Q ss_pred ccccccccCCCCCCCCCcCeeeeCChhHHHHHHHHhhhCCCcEEEEEe--CCCChhhhhhHHHHHHHHHHhcC
Q 033006 58 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWM--ASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 58 ~~~~~g~~~P~~~~~~~~~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~--A~WC~pC~~~~p~le~La~~y~~ 128 (129)
..+++|..+|+++..+..+ .|. |.+.+ +.-+.|.|. |+.-+.|-.+.-.+.+++.||..
T Consensus 4 ~~l~lgd~~PNfea~Tt~g--~i~----fhd~~------gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~K 64 (224)
T KOG0854|consen 4 PRLRLGDTVPNFEADTTVG--KIK----FHDYL------GDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDK 64 (224)
T ss_pred CcccccCcCCCcccccccc--cee----hhhhc------ccceEEEecCcccCCcchhHHHHHHHhhChhhhh
Confidence 4567899999998887654 232 44443 444566666 56679999999999999888864
No 220
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=28.98 E-value=1.1e+02 Score=21.18 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.2
Q ss_pred eeeeCCh--hHHHHHHHHhhhCCCcEEEEE
Q 033006 77 LEPINDS--DHLDQILLRAQELSQPILIDW 104 (129)
Q Consensus 77 ~~~i~s~--~~f~~~l~~a~~~~k~vvV~F 104 (129)
...+++. +++++.++++.+.++|.||+.
T Consensus 124 ~~~v~~~~~~el~~al~~a~~~~gp~vIeV 153 (153)
T PF02775_consen 124 GARVTTPDPEELEEALREALESGGPAVIEV 153 (153)
T ss_dssp EEEESCHSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHhCCCcEEEEc
Confidence 4567777 899999998888899999974
No 221
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=28.45 E-value=1.3e+02 Score=21.39 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=24.4
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMA 106 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A 106 (129)
...+++.+++++.+..+...++|++|++..
T Consensus 142 ~~~v~~~~el~~al~~a~~~~~p~liev~i 171 (172)
T cd02004 142 GELVTTPEELKPALKRALASGKPALINVII 171 (172)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCEEEEEEc
Confidence 467788889999988877778999998753
No 222
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=26.86 E-value=1.2e+02 Score=21.96 Aligned_cols=30 Identities=27% Similarity=0.165 Sum_probs=25.1
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMA 106 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A 106 (129)
...+.+.+++++.++++.+.++|.||+.-.
T Consensus 140 ~~~v~~~~el~~al~~a~~~~~p~liev~~ 169 (177)
T cd02010 140 GYRIESADDLLPVLERALAADGVHVIDCPV 169 (177)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 467888999999998887788999998764
No 223
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=26.32 E-value=1e+02 Score=23.22 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=26.1
Q ss_pred CCCcEEEEEeCCCCh-hhhhhHHHHHHHHHHhc
Q 033006 96 LSQPILIDWMASWCR-KCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 96 ~~k~vvV~F~A~WC~-pC~~~~p~le~La~~y~ 127 (129)
.+++++|.|.=+.|+ .|-.+...+.++.++..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~ 98 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLG 98 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhc
Confidence 599999999989986 79888887777766554
No 224
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=25.86 E-value=1.7e+02 Score=25.26 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhhCCCc-EEEEEeCCCChhhhhhHHHHHHHHH
Q 033006 84 DHLDQILLRAQELSQP-ILIDWMASWCRKCIYLKPKLEKLAA 124 (129)
Q Consensus 84 ~~f~~~l~~a~~~~k~-vvV~F~A~WC~pC~~~~p~le~La~ 124 (129)
+++.+++. +..++ .++.|+.+-|..|..+...+++++.
T Consensus 355 ~~l~~~~~---~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~ 393 (555)
T TIGR03143 355 QQLVGIFG---RLENPVTLLLFLDGSNEKSAELQSFLGEFAS 393 (555)
T ss_pred HHHHHHHH---hcCCCEEEEEEECCCchhhHHHHHHHHHHHh
Confidence 45667776 44566 4667778889999999999999884
No 225
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=25.03 E-value=2.4e+02 Score=19.49 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=33.4
Q ss_pred CeeeeCChhHHHHHHHHhhhCCCcEEEEEeCC--CCh-hh-hhhHHHHHHHHHHhcCC
Q 033006 76 ELEPINDSDHLDQILLRAQELSQPILIDWMAS--WCR-KC-IYLKPKLEKLAAEFDTK 129 (129)
Q Consensus 76 ~~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~--WC~-pC-~~~~p~le~La~~y~~k 129 (129)
.++++++.+.+++.=. ..+..+|-|.=. -|. .+ ......|.++|++|+++
T Consensus 3 ~~~~l~~~~~~~~~C~----~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk 56 (130)
T cd02983 3 EIIELTSEDVFEETCE----EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK 56 (130)
T ss_pred ceEEecCHHHHHhhcc----CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5678888877766542 356777777432 122 23 46788999999999875
No 226
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=24.69 E-value=1.3e+02 Score=21.68 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=23.7
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEe
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWM 105 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~ 105 (129)
...+++.+++++.++++.+.++|.||+.-
T Consensus 145 ~~~v~~~~el~~al~~a~~~~~p~lIev~ 173 (175)
T cd02009 145 YRRVSSLDELEQALESALAQDGPHVIEVK 173 (175)
T ss_pred eeeCCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 45678899999998888777899999864
No 227
>PF06122 TraH: Conjugative relaxosome accessory transposon protein; InterPro: IPR010927 Six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems. With the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm []. It has been proposed that the TraH interaction group is to control F-pilus extension and retraction during conjugation [, , ].
Probab=24.08 E-value=57 Score=26.78 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHhhhCCCcEEEE-EeCCCChhhhhhHHHHHHHHHHhcC
Q 033006 81 NDSDHLDQILLRAQELSQPILID-WMASWCRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 81 ~s~~~f~~~l~~a~~~~k~vvV~-F~A~WC~pC~~~~p~le~La~~y~~ 128 (129)
-+.++|-+.++++..+-.....+ =--+|||.|...+..|+++++++.+
T Consensus 68 In~dqlVq~lr~Ia~nA~gyAF~LAL~t~~p~~~~~~~~lq~~~~~lN~ 116 (361)
T PF06122_consen 68 INSDQLVQMLRNIASNAPGYAFQLALQTLCPQCGNIMDKLQKIAQALNQ 116 (361)
T ss_pred CCHHHHHHHHHHHHHhhHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence 34566766665442222211111 1258999999999999999988753
No 228
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=24.04 E-value=1.4e+02 Score=22.09 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=24.8
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEeC
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWMA 106 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~A 106 (129)
...+.+.+++++.+..+.+.++|+||+.-.
T Consensus 154 ~~~v~~~~el~~al~~a~~~~gp~lIeV~v 183 (205)
T cd02003 154 VEKVKTIEELKAALAKAKASDRTTVIVIKT 183 (205)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 457888999999998887778999998764
No 229
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=23.43 E-value=2.4e+02 Score=20.97 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=31.7
Q ss_pred ChhHHHHHHHHhhhCCCcEEEEEeCC--CChhh----------hhhHHHHHHHHHHhcC
Q 033006 82 DSDHLDQILLRAQELSQPILIDWMAS--WCRKC----------IYLKPKLEKLAAEFDT 128 (129)
Q Consensus 82 s~~~f~~~l~~a~~~~k~vvV~F~A~--WC~pC----------~~~~p~le~La~~y~~ 128 (129)
..+.++.+|..+.+.+-.|+|+++.. |+..= ..+...+..++++|++
T Consensus 60 ~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~ 118 (281)
T PF00150_consen 60 YLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKD 118 (281)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCC
Confidence 34678889988888899999999995 74211 1233456678888843
No 230
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=23.40 E-value=2.1e+02 Score=23.62 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=36.7
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCC----CChh-------------hhhhHHHHHHHHHHh
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMAS----WCRK-------------CIYLKPKLEKLAAEF 126 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~----WC~p-------------C~~~~p~le~La~~y 126 (129)
..+.+.+....++.+|.+.+.||+|.+.-. .++. ++.+.+.+..+++++
T Consensus 21 fN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~ 86 (345)
T cd00946 21 VNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHY 86 (345)
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHC
Confidence 345677888999999999999999988544 2332 346788888888776
No 231
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=23.02 E-value=49 Score=20.27 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=15.2
Q ss_pred EEeCCCChhhhhhHHHHHHHH
Q 033006 103 DWMASWCRKCIYLKPKLEKLA 123 (129)
Q Consensus 103 ~F~A~WC~pC~~~~p~le~La 123 (129)
.++.++|+.|....-.+++..
T Consensus 4 Ly~~~~sp~~~kv~~~L~~~g 24 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTELE 24 (77)
T ss_pred EecCCCCchHHHHHHHHHHcC
Confidence 455678999988777776654
No 232
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=22.80 E-value=48 Score=19.72 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=16.9
Q ss_pred EEeCCCChhhhhhHHHHHHHHHHh
Q 033006 103 DWMASWCRKCIYLKPKLEKLAAEF 126 (129)
Q Consensus 103 ~F~A~WC~pC~~~~p~le~La~~y 126 (129)
.|+.++|+.|+...-.+++..-+|
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~~ 26 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGLEL 26 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCCCC
Confidence 467888999987777776654333
No 233
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=22.54 E-value=2.1e+02 Score=19.76 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=22.9
Q ss_pred eeeeCChhHHHHHHHHhhhCCCcEEEEEe
Q 033006 77 LEPINDSDHLDQILLRAQELSQPILIDWM 105 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~~~k~vvV~F~ 105 (129)
...+++.+++.+.+.++.+.++|+||+..
T Consensus 139 ~~~v~~~~~l~~a~~~a~~~~~p~~i~v~ 167 (168)
T cd00568 139 GVRVEDPEDLEAALAEALAAGGPALIEVK 167 (168)
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45677888898888877777889998864
No 234
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=22.09 E-value=1.2e+02 Score=21.51 Aligned_cols=25 Identities=24% Similarity=0.609 Sum_probs=18.0
Q ss_pred EEEEeCCC--ChhhhhhHHHHHHHHHHhcC
Q 033006 101 LIDWMASW--CRKCIYLKPKLEKLAAEFDT 128 (129)
Q Consensus 101 vV~F~A~W--C~pC~~~~p~le~La~~y~~ 128 (129)
-|+.|+.+ |..|.. +++++.++|++
T Consensus 98 ~i~l~te~~pC~SC~~---vi~qF~~~~pn 124 (133)
T PF14424_consen 98 TIDLFTELPPCESCSN---VIEQFKKDFPN 124 (133)
T ss_pred eEEEEecCCcChhHHH---HHHHHHHHCCC
Confidence 46677666 888876 66777788875
No 235
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=21.53 E-value=2.9e+02 Score=22.14 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=35.1
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCChh---hhhhHHHHHHHHHHhc
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMASWCRK---CIYLKPKLEKLAAEFD 127 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC~p---C~~~~p~le~La~~y~ 127 (129)
..+.+.+....++.+|...+.|++|.+.-.-+.. =..+.+.+..+++++.
T Consensus 23 fN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~ 75 (285)
T PRK07709 23 FNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMN 75 (285)
T ss_pred EEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcC
Confidence 4566788888999998888999999985433321 1355667777777653
No 236
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.75 E-value=2.4e+02 Score=22.84 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=36.3
Q ss_pred eeeCChhHHHHHHHHhhhCCCcEEEEEeCCCC---hhhhhhHHHHHHHHHHhc
Q 033006 78 EPINDSDHLDQILLRAQELSQPILIDWMASWC---RKCIYLKPKLEKLAAEFD 127 (129)
Q Consensus 78 ~~i~s~~~f~~~l~~a~~~~k~vvV~F~A~WC---~pC~~~~p~le~La~~y~ 127 (129)
..+++.+....++.+|...+-||+|.|.-.-- +--..+...+..++++|+
T Consensus 23 fN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~ 75 (286)
T COG0191 23 FNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG 75 (286)
T ss_pred eeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC
Confidence 45778888899999998999999999864332 223556667777777764
No 237
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=20.36 E-value=1.8e+02 Score=21.33 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=25.2
Q ss_pred eeeeCChhHHHHHHHHhhh---CCCcEEEEEeCC
Q 033006 77 LEPINDSDHLDQILLRAQE---LSQPILIDWMAS 107 (129)
Q Consensus 77 ~~~i~s~~~f~~~l~~a~~---~~k~vvV~F~A~ 107 (129)
...+.+.+++++.++++.. .++|+||+...+
T Consensus 146 ~~~v~~~~el~~al~~a~~~~~~~~p~liev~v~ 179 (196)
T cd02013 146 GITVDKPEDVGPALQKAIAMMAEGKTTVIEIVCD 179 (196)
T ss_pred EEEECCHHHHHHHHHHHHhcCCCCCeEEEEEEeC
Confidence 4678889999999888765 789999998753
Done!