Query 033011
Match_columns 129
No_of_seqs 121 out of 665
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nxp_A Transcription initiatio 91.2 0.34 1.2E-05 33.4 4.8 74 30-105 35-108 (156)
2 2j4b_A TAF5, transcription ini 86.2 1.5 5.2E-05 29.4 5.2 63 30-95 16-78 (138)
3 2j49_A Transcription initiatio 80.3 0.96 3.3E-05 30.9 2.3 46 46-94 34-79 (148)
4 3sjr_A Uncharacterized protein 77.7 7 0.00024 27.1 6.0 63 33-96 101-164 (175)
5 4a18_Q RPL36, 60S ribosomal pr 66.7 7.8 0.00027 24.9 3.9 46 49-94 51-99 (104)
6 3iko_C Nucleoporin NUP84; NPC, 66.7 5.5 0.00019 32.0 3.9 29 8-36 175-203 (460)
7 2dna_A Unnamed protein product 64.5 7.6 0.00026 22.9 3.3 26 13-38 33-60 (67)
8 3sxm_A Transcriptional regulat 62.9 14 0.00047 23.5 4.7 31 8-38 97-127 (140)
9 3c1q_A General secretion pathw 60.6 17 0.00059 22.9 4.9 24 14-37 18-42 (123)
10 1whc_A RSGI RUH-027, UBA/UBX 3 58.3 14 0.00049 21.2 3.7 25 14-38 23-50 (64)
11 2cp9_A EF-TS, EF-TSMT, elongat 54.6 7.7 0.00026 22.7 2.1 15 23-37 35-49 (64)
12 3dwl_G Actin-related protein 2 51.8 2.3 7.7E-05 29.3 -0.7 24 15-38 41-64 (152)
13 2bwb_A Ubiquitin-like protein 51.0 17 0.0006 19.4 3.1 21 14-34 22-44 (46)
14 3izc_k 60S ribosomal protein R 49.7 5 0.00017 25.6 0.8 45 50-94 51-95 (100)
15 3r8n_T 30S ribosomal protein S 47.4 22 0.00077 21.8 3.5 28 15-42 31-58 (85)
16 2knz_A Ubiquilin-4; cytoplasm, 46.4 22 0.00075 19.5 3.1 23 14-36 26-50 (53)
17 1wr1_B Ubiquitin-like protein 45.4 22 0.00076 20.1 3.0 22 14-35 32-55 (58)
18 2v5f_A Prolyl 4-hydroxylase su 44.1 50 0.0017 19.7 7.2 60 17-76 12-73 (104)
19 1vek_A UBP14, ubiquitin-specif 42.9 32 0.0011 20.9 3.7 25 14-38 43-70 (84)
20 2jy5_A Ubiquilin-1; UBA, alter 42.6 27 0.00092 19.1 3.1 21 14-34 27-49 (52)
21 2pm7_A Protein WEB1, protein t 42.4 18 0.00061 28.4 3.1 23 14-36 147-169 (399)
22 3sxy_A Transcriptional regulat 41.5 37 0.0013 23.5 4.5 31 8-38 172-202 (218)
23 3hkz_Y DNA-directed RNA polyme 41.1 21 0.00073 22.3 2.6 39 5-43 38-78 (104)
24 3ihu_A Transcriptional regulat 39.8 42 0.0014 23.3 4.5 27 11-37 183-209 (222)
25 2vqe_T 30S ribosomal protein S 39.7 35 0.0012 21.8 3.7 29 15-43 38-66 (106)
26 1vej_A Riken cDNA 4931431F19; 38.4 29 0.001 20.7 2.9 23 14-36 44-68 (74)
27 2vgx_A Chaperone SYCD; alterna 38.2 74 0.0025 20.0 6.7 53 16-76 27-82 (148)
28 3op1_A Macrolide-efflux protei 37.8 16 0.00056 27.7 2.1 25 14-38 167-191 (308)
29 3gw4_A Uncharacterized protein 37.0 80 0.0027 20.1 5.4 11 21-31 3-13 (203)
30 4ae4_A Ubiquitin-associated pr 36.6 29 0.00098 22.5 2.9 23 14-36 90-114 (118)
31 3ma5_A Tetratricopeptide repea 36.4 63 0.0022 18.7 6.4 73 19-96 16-90 (100)
32 1z96_A DNA-damage, UBA-domain 35.9 35 0.0012 17.0 2.7 11 23-33 29-39 (40)
33 1k8k_G P16, ARP2/3 complex 16 35.8 22 0.00076 24.3 2.3 25 14-38 39-63 (151)
34 2ekk_A UBA domain from E3 ubiq 35.5 40 0.0014 17.7 3.0 22 15-36 24-46 (47)
35 1wgn_A UBAP1, ubiquitin associ 35.0 20 0.00068 20.9 1.7 23 14-36 33-57 (63)
36 2crn_A Ubash3A protein; compac 34.5 54 0.0018 18.7 3.6 25 14-38 23-50 (64)
37 4b4t_Q 26S proteasome regulato 34.0 1.2E+02 0.004 22.2 6.4 29 1-35 1-29 (434)
38 2vxg_A LD41624, GE-1, CG6181-P 34.0 41 0.0014 22.4 3.4 19 13-31 3-21 (139)
39 2cwb_A Chimera of immunoglobul 33.7 40 0.0014 21.6 3.2 23 14-36 81-105 (108)
40 1hw1_A FADR, fatty acid metabo 33.5 38 0.0013 23.6 3.4 25 53-77 193-217 (239)
41 1ify_A HHR23A, UV excision rep 33.4 36 0.0012 18.3 2.6 23 14-36 22-46 (49)
42 3mkr_B Coatomer subunit alpha; 33.2 60 0.002 24.8 4.6 40 15-61 21-60 (320)
43 2wpv_A GET4, UPF0363 protein Y 32.7 1.6E+02 0.0054 22.2 7.5 62 12-73 15-77 (312)
44 2di3_A Bacterial regulatory pr 32.2 50 0.0017 23.2 3.9 25 12-36 194-218 (239)
45 2dah_A Ubiquilin-3; UBA domain 31.9 29 0.001 19.2 2.1 23 14-36 24-48 (54)
46 2x0k_A Riboflavin biosynthesis 31.8 26 0.00091 26.7 2.4 23 15-37 165-187 (338)
47 3mv2_B Coatomer subunit epsilo 31.6 1.5E+02 0.005 22.2 6.6 51 20-74 110-161 (310)
48 2cpw_A CBL-interacting protein 31.1 54 0.0019 18.7 3.2 23 14-36 33-58 (64)
49 3mkr_A Coatomer subunit epsilo 30.6 1.1E+02 0.0036 21.8 5.6 19 16-34 5-23 (291)
50 1wiv_A UBP14, ubiquitin-specif 30.6 58 0.002 19.1 3.4 24 14-37 43-68 (73)
51 3mkr_A Coatomer subunit epsilo 30.4 1.1E+02 0.0037 21.8 5.6 15 21-35 112-126 (291)
52 2hs5_A Putative transcriptiona 30.2 70 0.0024 22.6 4.4 27 11-37 195-221 (239)
53 3mzk_B Protein transport prote 29.3 44 0.0015 26.6 3.4 24 13-36 153-176 (441)
54 3mv2_A Coatomer subunit alpha; 29.2 67 0.0023 24.6 4.3 40 15-61 33-72 (325)
55 2g3q_A Protein YBL047C; endocy 29.0 64 0.0022 16.5 3.2 13 23-35 29-41 (43)
56 2kc7_A BFR218_protein; tetratr 28.8 81 0.0028 17.6 8.3 59 15-77 5-63 (99)
57 2dak_A Ubiquitin carboxyl-term 28.6 47 0.0016 18.8 2.6 25 14-38 23-49 (63)
58 1wji_A Tudor domain containing 28.6 72 0.0025 18.1 3.4 23 15-37 24-48 (63)
59 2y4t_A DNAJ homolog subfamily 27.8 1.8E+02 0.006 21.2 7.8 20 17-36 264-283 (450)
60 3ro2_A PINS homolog, G-protein 27.5 1.5E+02 0.005 20.1 7.3 60 14-74 9-68 (338)
61 3uq3_A Heat shock protein STI1 27.2 1.3E+02 0.0046 19.6 6.5 56 17-77 146-201 (258)
62 2dkl_A Trinucleotide repeat co 26.7 65 0.0022 19.5 3.2 24 14-37 35-60 (85)
63 3sf4_A G-protein-signaling mod 26.3 1.5E+02 0.0052 20.9 5.8 60 15-75 14-73 (406)
64 2cos_A Serine/threonine protei 26.2 42 0.0014 18.8 2.0 14 23-36 33-48 (54)
65 1aip_C EF-TS, elongation facto 26.0 34 0.0012 24.3 2.0 47 23-73 29-102 (196)
66 3ro3_A PINS homolog, G-protein 25.4 1.1E+02 0.0038 18.0 5.9 61 16-76 55-116 (164)
67 2dag_A Ubiquitin carboxyl-term 25.3 91 0.0031 18.3 3.6 26 14-39 23-51 (74)
68 3nf1_A KLC 1, kinesin light ch 25.0 1.6E+02 0.0055 19.8 7.7 64 14-77 31-97 (311)
69 2jr2_A UPF0352 protein CPS_261 24.8 61 0.0021 19.4 2.6 18 110-127 48-65 (76)
70 2rg8_A Programmed cell death p 24.8 1.2E+02 0.004 20.5 4.6 34 4-37 2-37 (165)
71 2dai_A Ubadc1, ubiquitin assoc 24.1 54 0.0019 19.8 2.4 25 14-38 43-69 (83)
72 1veg_A NEDD8 ultimate buster-1 23.7 95 0.0032 18.8 3.5 25 14-38 43-69 (83)
73 3u4t_A TPR repeat-containing p 23.5 1.7E+02 0.0058 19.5 7.4 17 20-36 47-63 (272)
74 2juw_A UPF0352 protein SO_2176 23.3 67 0.0023 19.5 2.6 18 110-127 49-66 (80)
75 2lbc_A Ubiquitin carboxyl-term 23.1 71 0.0024 20.5 3.1 16 23-38 29-44 (126)
76 2jpq_A UPF0352 protein VP2129; 22.9 69 0.0023 19.5 2.6 18 110-127 49-66 (83)
77 1vg5_A RSGI RUH-014, rhomboid 22.4 86 0.003 18.5 3.0 23 14-36 43-67 (73)
78 1xb2_B EF-TS, elongation facto 22.3 42 0.0014 25.2 2.0 40 23-62 30-98 (291)
79 1s3a_A NADH-ubiquinone oxidore 22.2 29 0.001 21.6 1.0 31 23-53 30-60 (102)
80 1elw_A TPR1-domain of HOP; HOP 22.0 1.1E+02 0.0039 17.0 8.0 58 15-77 9-66 (118)
81 4e97_A Lysozyme; hydrolase, al 21.9 1.1E+02 0.0037 21.0 4.0 42 15-65 138-181 (187)
82 3cuq_A Vacuolar-sorting protei 21.6 1E+02 0.0035 22.4 3.9 56 68-123 23-81 (234)
83 2kck_A TPR repeat; tetratricop 20.8 1.2E+02 0.004 16.7 5.2 54 19-77 15-68 (112)
84 1hz4_A MALT regulatory protein 20.7 1.3E+02 0.0043 21.6 4.4 18 19-36 23-40 (373)
85 3c7j_A Transcriptional regulat 20.5 92 0.0031 22.0 3.5 28 11-38 192-219 (237)
86 2xev_A YBGF; tetratricopeptide 20.4 1.4E+02 0.0047 17.3 8.1 57 17-77 9-67 (129)
87 1u5t_A Appears to BE functiona 20.2 1.5E+02 0.0053 21.4 4.6 57 67-124 42-101 (233)
88 2hl7_A Cytochrome C-type bioge 20.1 53 0.0018 20.0 1.8 28 11-38 46-74 (84)
No 1
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=91.18 E-value=0.34 Score=33.37 Aligned_cols=74 Identities=18% Similarity=0.130 Sum_probs=51.1
Q ss_pred HHHHHhhchHHHccCcccchhhHHHHHHHHHhcCChHHHHHHHHHhcCCcCCchhHHHHHHHHHhHhccCCCCCCc
Q 033011 30 IELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSP 105 (129)
Q Consensus 30 i~~~~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l~~~~~~~~~~~~l~~~~~lLay~~~~~sp 105 (129)
.+|++..-......=..+.|=+-+.-|++||.+|...+|-.|-.++-+.+. ..+.+.++...++.--....+.+
T Consensus 35 ~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~~~~~l~~n~ 108 (156)
T 2nxp_A 35 KHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNE 108 (156)
T ss_dssp HHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCG
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH--HHHHHHHHHHhcCCCHHHHhhcH
Confidence 456655332222223567899999999999999999999999997776665 67777777776655433333333
No 2
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=86.21 E-value=1.5 Score=29.44 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=41.8
Q ss_pred HHHHHhhchHHHccCcccchhhHHHHHHHHHhcCChHHHHHHHHHhcCCcCCchhHHHHHHHHHhH
Q 033011 30 IELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMAL 95 (129)
Q Consensus 30 i~~~~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l~~~~~~~~~~~~l~~~~~l 95 (129)
.+|++..-......=..+.|=+-+.-|++||.+|...+|-.|-.++-+.+. .. .+.++...++
T Consensus 16 ~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~-~~~i~~L~~i 78 (138)
T 2j4b_A 16 KTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY--NK-SEEIKQFESI 78 (138)
T ss_dssp HHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----C-HHHHHHHTTC
T ss_pred HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHh--hH-HHHHHHHhcC
Confidence 456655322222222467899999999999999999999999987666554 33 5555555443
No 3
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=80.33 E-value=0.96 Score=30.90 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=35.5
Q ss_pred ccchhhHHHHHHHHHhcCChHHHHHHHHHhcCCcCCchhHHHHHHHHHh
Q 033011 46 DLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 94 (129)
Q Consensus 46 ~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l~~~~~~~~~~~~l~~~~~ 94 (129)
.+.|=+-+.-|++||.+| ..+|-.|-.++-..+. ..+.+.++...+
T Consensus 34 ~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~--~~~~~~i~~L~~ 79 (148)
T 2j49_A 34 YIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFK--DFHGSEINRLFS 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGH--HHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhH--HHHHHHHHHHhc
Confidence 468889999999999999 9999999887666554 455555555544
No 4
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=77.68 E-value=7 Score=27.12 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=45.6
Q ss_pred HHhhchHHHccCcccchhhHHHHHHHHHhcCChHHHHHHHHHhcCCcCC-chhHHHHHHHHHhHh
Q 033011 33 TEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK-VQKYVEKLEDFMALL 96 (129)
Q Consensus 33 ~~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l~~~~~-~~~~~~~l~~~~~lL 96 (129)
....|+.-.+.|+++.+.=..+.|+++|+.| ++.-..-||..|.-+.. +......+..+..|.
T Consensus 101 aT~FF~~yq~qhPd~~~ee~L~~Fm~lIgGG-iEqGF~EArdIL~GL~VleG~IA~~IdkTY~Lv 164 (175)
T 3sjr_A 101 MEILMELYRQQHPDWTAPAIRQAFAPLARAG-LERGYQEACQVLRQLNVYTPAVAGQLQGLLLLT 164 (175)
T ss_dssp HHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhccccCcHHHHhHHHHHHHH
Confidence 3445566677899999999999999999976 67767777776665543 466666666665553
No 5
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=66.69 E-value=7.8 Score=24.88 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHhcCC---hHHHHHHHHHhcCCcCCchhHHHHHHHHHh
Q 033011 49 FDLLSLHFVELVCSRK---CTEALEFAQTKLTPFGKVQKYVEKLEDFMA 94 (129)
Q Consensus 49 F~L~~q~fIELir~~~---~~~Ai~~ar~~l~~~~~~~~~~~~l~~~~~ 94 (129)
|-=+...-+||++.++ .-.|+.|+++.+..+..-....++++.+.+
T Consensus 51 faPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RAKrKreel~~vl~ 99 (104)
T 4a18_Q 51 FAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRAKVKKALLEEAVR 99 (104)
T ss_dssp CCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4556678899999999 789999999999877522334455555443
No 6
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=66.66 E-value=5.5 Score=31.96 Aligned_cols=29 Identities=28% Similarity=0.192 Sum_probs=23.4
Q ss_pred HHhHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 033011 8 LEDMEMRKRILHFALEGNALKAIELTEEL 36 (129)
Q Consensus 8 ~~~~~~R~~I~~~I~~G~i~~Ai~~~~~~ 36 (129)
.+.-.--+.|-.+|+.|++++|++||.+.
T Consensus 175 ~~e~~l~~~i~~liR~G~~~eA~~lc~~~ 203 (460)
T 3iko_C 175 EEDHIFFKYIYELILAGAIDEALEEAKLS 203 (460)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 33344457788999999999999999883
No 7
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=64.46 E-value=7.6 Score=22.92 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=19.1
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHhhch
Q 033011 13 MRKRILHFAL--EGNALKAIELTEELAQ 38 (129)
Q Consensus 13 ~R~~I~~~I~--~G~i~~Ai~~~~~~~p 38 (129)
+|+...++++ .||++.|++|+-.+-+
T Consensus 33 d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 33 NYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4666555555 5999999999987654
No 8
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=62.89 E-value=14 Score=23.50 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHHHHcCCHHHHHHHHHhhch
Q 033011 8 LEDMEMRKRILHFALEGNALKAIELTEELAQ 38 (129)
Q Consensus 8 ~~~~~~R~~I~~~I~~G~i~~Ai~~~~~~~p 38 (129)
..++.+=..|.++|.+||.+.|...+..+.-
T Consensus 97 ~~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl~ 127 (140)
T 3sxm_A 97 VVSNREHKELIERIISGDKEGAIEKLKEHLK 127 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556667777777777777777666543
No 9
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=60.63 E-value=17 Score=22.86 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=15.3
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHhhc
Q 033011 14 RKRILHFALEG-NALKAIELTEELA 37 (129)
Q Consensus 14 R~~I~~~I~~G-~i~~Ai~~~~~~~ 37 (129)
-..+-.++.+| .+.+|++.+.+..
T Consensus 18 ~~~La~ll~sGv~l~~aL~~~~~~~ 42 (123)
T 3c1q_A 18 TRQLATLVQSGMPLEECLRAVAEQS 42 (123)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHc
Confidence 34455666777 5777777776654
No 10
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=58.34 E-value=14 Score=21.23 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=18.9
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHhhch
Q 033011 14 RKRILHFAL---EGNALKAIELTEELAQ 38 (129)
Q Consensus 14 R~~I~~~I~---~G~i~~Ai~~~~~~~p 38 (129)
|.+.+.+++ +|+++.|++|+-.+.+
T Consensus 23 ~~~a~~AL~~t~~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 23 RGRAEKALALTGNQGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhCCC
Confidence 556666665 5789999999987654
No 11
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=54.56 E-value=7.7 Score=22.71 Aligned_cols=15 Identities=20% Similarity=0.056 Sum_probs=13.0
Q ss_pred cCCHHHHHHHHHhhc
Q 033011 23 EGNALKAIELTEELA 37 (129)
Q Consensus 23 ~G~i~~Ai~~~~~~~ 37 (129)
+||++.|+.|+.+..
T Consensus 35 ~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 35 GGDLKQAEIWLHKEA 49 (64)
T ss_dssp TSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 699999999998754
No 12
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=51.81 E-value=2.3 Score=29.31 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhch
Q 033011 15 KRILHFALEGNALKAIELTEELAQ 38 (129)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~~~~~~p 38 (129)
.+||.+|..|+..+|+..+-++-|
T Consensus 41 ~qvr~lL~~g~~~~ALk~aL~~pP 64 (152)
T 3dwl_G 41 PQARSAIQTGNALQGLKTLLSYVP 64 (152)
T ss_dssp HHHHHHHHHSCCHHHHHHHTSSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC
Confidence 889999999999999999987765
No 13
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=50.98 E-value=17 Score=19.44 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=13.6
Q ss_pred HHHHHHHHH--cCCHHHHHHHHH
Q 033011 14 RKRILHFAL--EGNALKAIELTE 34 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~ 34 (129)
|..++.++. .||++.|++|+-
T Consensus 22 ~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 22 FDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 445444443 588888888863
No 14
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=49.72 E-value=5 Score=25.63 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhcCCcCCchhHHHHHHHHHh
Q 033011 50 DLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMA 94 (129)
Q Consensus 50 ~L~~q~fIELir~~~~~~Ai~~ar~~l~~~~~~~~~~~~l~~~~~ 94 (129)
-=+...-+||++.++.-.|+.|+++.+..+..-....++++.+.+
T Consensus 51 aPYErr~mELLkvskdKrAlKf~KKRlGth~RAKrKreel~~vl~ 95 (100)
T 3izc_k 51 SPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAKVEEMNNIIA 95 (100)
T ss_dssp TTSCCHHHHHHHHHTSCCSHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334457789999998889999999999777543445566665544
No 15
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=47.42 E-value=22 Score=21.81 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhchHHHc
Q 033011 15 KRILHFALEGNALKAIELTEELAQDLLE 42 (129)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~~~~~~p~ll~ 42 (129)
+.++.+|..||.+.|.+.+..-.|.|.+
T Consensus 31 Kk~~~Ai~~gd~~~A~~~l~~a~~~iDk 58 (85)
T 3r8n_T 31 KKVYAAIEAGDKAAAQKAFNEMQPIVDR 58 (85)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999888887644
No 16
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=46.43 E-value=22 Score=19.54 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=15.5
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhh
Q 033011 14 RKRILHFAL--EGNALKAIELTEEL 36 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~ 36 (129)
|...+.++. +||++.|++|+-.+
T Consensus 26 ~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 26 REANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 455455443 58899999998654
No 17
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=45.42 E-value=22 Score=20.11 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=14.8
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHh
Q 033011 14 RKRILHFAL--EGNALKAIELTEE 35 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~ 35 (129)
|..++.++. .||++.|++|+-.
T Consensus 32 ~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 32 FDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHh
Confidence 555555544 4888888888754
No 18
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=44.06 E-value=50 Score=19.70 Aligned_cols=60 Identities=13% Similarity=-0.021 Sum_probs=37.3
Q ss_pred HHHHHHcCCHHHHHHHHHhhchHHHccCc-c-cchhhHHHHHHHHHhcCChHHHHHHHHHhc
Q 033011 17 ILHFALEGNALKAIELTEELAQDLLEKNK-D-LHFDLLSLHFVELVCSRKCTEALEFAQTKL 76 (129)
Q Consensus 17 I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~-~-l~F~L~~q~fIELir~~~~~~Ai~~ar~~l 76 (129)
=+.+...|++..|+.|...---.....+. . -.-.++.+--.-+.+.|+..+|+.+.++-+
T Consensus 12 G~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35677889999999999886544433211 1 111222222233457799999999988654
No 19
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=42.86 E-value=32 Score=20.86 Aligned_cols=25 Identities=8% Similarity=-0.003 Sum_probs=18.9
Q ss_pred HHHHHHHHH-c--CCHHHHHHHHHhhch
Q 033011 14 RKRILHFAL-E--GNALKAIELTEELAQ 38 (129)
Q Consensus 14 R~~I~~~I~-~--G~i~~Ai~~~~~~~p 38 (129)
|.+.++++. . |+++.|++|+-.+.+
T Consensus 43 ~~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 43 QLHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 567777755 3 589999999987753
No 20
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=42.63 E-value=27 Score=19.09 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=13.9
Q ss_pred HHHHHHHHH--cCCHHHHHHHHH
Q 033011 14 RKRILHFAL--EGNALKAIELTE 34 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~ 34 (129)
|...+.++. .||++.|++|+-
T Consensus 27 ~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 27 REANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 455455544 378999998874
No 21
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=42.45 E-value=18 Score=28.40 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhh
Q 033011 14 RKRILHFALEGNALKAIELTEEL 36 (129)
Q Consensus 14 R~~I~~~I~~G~i~~Ai~~~~~~ 36 (129)
=..|.++|+.||++.|+++|=+.
T Consensus 147 d~~I~~aLl~Gd~e~AV~~cl~~ 169 (399)
T 2pm7_A 147 EQTISKNLVSGNIKSAVKNSLEN 169 (399)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHC
Confidence 45799999999999999998653
No 22
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=41.52 E-value=37 Score=23.47 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHhHHHHHHHHHHHHcCCHHHHHHHHHhhch
Q 033011 8 LEDMEMRKRILHFALEGNALKAIELTEELAQ 38 (129)
Q Consensus 8 ~~~~~~R~~I~~~I~~G~i~~Ai~~~~~~~p 38 (129)
..++.+-..|.++|.+||.+.|...+.++.-
T Consensus 172 ~~~~~~H~~i~~ai~~~d~~~A~~~~~~Hl~ 202 (218)
T 3sxy_A 172 VVSNREHKELIERIISGDKEGAIEKLKEHLK 202 (218)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666777778888888877777776654
No 23
>3hkz_Y DNA-directed RNA polymerase subunit 13; archaea, metal-binding, nucleotidyltransferase, transcription, transferase, zinc, zinc-finger; 3.40A {Sulfolobus solfataricus}
Probab=41.13 E-value=21 Score=22.29 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=32.3
Q ss_pred cccHHhHHHHHHHHHHHHcCC--HHHHHHHHHhhchHHHcc
Q 033011 5 ANCLEDMEMRKRILHFALEGN--ALKAIELTEELAQDLLEK 43 (129)
Q Consensus 5 ~~d~~~~~~R~~I~~~I~~G~--i~~Ai~~~~~~~p~ll~~ 43 (129)
-.|++.+-.+..|++-+++|. |++|...+.+++...-++
T Consensus 38 iqDIELL~KnTEIWdkLl~gkISIEEAKklFedn~~~y~kk 78 (104)
T 3hkz_Y 38 IQDIELLMRNTEIWDNLLNGKITLEEAKKLFEDNYKEYEKR 78 (104)
T ss_dssp CCCTTHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHhhhHHHHHHHcCcccHHHHHHHHHHHHHHHhhh
Confidence 357888899999999999998 578999999888766444
No 24
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=39.83 E-value=42 Score=23.29 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 033011 11 MEMRKRILHFALEGNALKAIELTEELA 37 (129)
Q Consensus 11 ~~~R~~I~~~I~~G~i~~Ai~~~~~~~ 37 (129)
+.+-..|.++|.+||.+.|...+.+|.
T Consensus 183 ~~eH~~I~~Ai~~~d~~~A~~~~~~Hl 209 (222)
T 3ihu_A 183 LDDYRRIATAVLAGEPDAAEAAGAAHV 209 (222)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344445555555555555555555443
No 25
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=39.71 E-value=35 Score=21.83 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=22.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhchHHHcc
Q 033011 15 KRILHFALEGNALKAIELTEELAQDLLEK 43 (129)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~ 43 (129)
+.++.+|..||.+.|.+.+..-+|.|.+-
T Consensus 38 Kkv~~Ai~~gdk~~A~~~l~~a~s~iDka 66 (106)
T 2vqe_T 38 KKAVQLAQEGKAEEALKIMRKAESLIDKA 66 (106)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999988888876543
No 26
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.42 E-value=29 Score=20.67 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=16.0
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhh
Q 033011 14 RKRILHFAL--EGNALKAIELTEEL 36 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~ 36 (129)
|..+++++. .||++.|++|+-.+
T Consensus 44 r~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 44 RDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 566555555 48888898888654
No 27
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=38.22 E-value=74 Score=20.03 Aligned_cols=53 Identities=8% Similarity=-0.110 Sum_probs=30.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhhchHHHccCc---ccchhhHHHHHHHHHhcCChHHHHHHHHHhc
Q 033011 16 RILHFALEGNALKAIELTEELAQDLLEKNK---DLHFDLLSLHFVELVCSRKCTEALEFAQTKL 76 (129)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~---~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l 76 (129)
.-......|++++|+..+... ++.++ ...+. .=.-+...|+.++|+.+.++-+
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~~~----lg~~~~~~g~~~~A~~~~~~al 82 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQAL----CVLDHYDSRFFLG----LGACRQAMGQYDLAIHSYSYGA 82 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH----HHHCTTCHHHHHH----HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHH----HHcCcccHHHHHH----HHHHHHHHhhHHHHHHHHHHHH
Confidence 344567789999998887652 22222 22221 1122345677788887777544
No 28
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=37.76 E-value=16 Score=27.66 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhch
Q 033011 14 RKRILHFALEGNALKAIELTEELAQ 38 (129)
Q Consensus 14 R~~I~~~I~~G~i~~Ai~~~~~~~p 38 (129)
-..||++|.+|+++.|-+++-..|.
T Consensus 167 ST~IR~~L~~G~v~~A~~lLGrpy~ 191 (308)
T 3op1_A 167 STRIRQAILDGNVKEAGKLLGAPLP 191 (308)
T ss_dssp HHHHHHHHHHTCHHHHHHHHSSCCE
T ss_pred HHHHHHHHHcCCHHHHHhhcCccee
Confidence 3689999999999999999977653
No 29
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=37.00 E-value=80 Score=20.07 Aligned_cols=11 Identities=9% Similarity=-0.290 Sum_probs=3.9
Q ss_pred HHcCCHHHHHH
Q 033011 21 ALEGNALKAIE 31 (129)
Q Consensus 21 I~~G~i~~Ai~ 31 (129)
+..|+++.|.+
T Consensus 3 ~~~g~~~~A~~ 13 (203)
T 3gw4_A 3 FEAHDYALAER 13 (203)
T ss_dssp ----CHHHHHH
T ss_pred cccccHHHHHH
Confidence 34555555555
No 30
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=36.57 E-value=29 Score=22.53 Aligned_cols=23 Identities=22% Similarity=0.079 Sum_probs=17.8
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhh
Q 033011 14 RKRILHFAL--EGNALKAIELTEEL 36 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~ 36 (129)
+..++.+++ +||++.|++|+-..
T Consensus 90 ~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 90 LKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 667777774 58999999998543
No 31
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=36.39 E-value=63 Score=18.70 Aligned_cols=73 Identities=18% Similarity=0.084 Sum_probs=41.0
Q ss_pred HHHHcCCHHHHHHHHHhhchHHHccCcccchhhHHHHHHHHHhcCChHHHHHHHHHhcCCcC--CchhHHHHHHHHHhHh
Q 033011 19 HFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFG--KVQKYVEKLEDFMALL 96 (129)
Q Consensus 19 ~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l~~~~--~~~~~~~~l~~~~~lL 96 (129)
-....|+++.|++++++.-- +...+....+.| =.-+...|+.++|+.+.++-+.-.. .+.....+++.+++-.
T Consensus 16 ~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~l----g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 16 EHLKHDNASRALALFEELVE-TDPDYVGTYYHL----GKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKA 90 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HSTTCTHHHHHH----HHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHH----HHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHc
Confidence 45678999999998876431 111122222222 2223456899999988886553221 1344455555555433
No 32
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=35.87 E-value=35 Score=16.97 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=9.2
Q ss_pred cCCHHHHHHHH
Q 033011 23 EGNALKAIELT 33 (129)
Q Consensus 23 ~G~i~~Ai~~~ 33 (129)
+||++.|++|+
T Consensus 29 ~~n~e~A~~~L 39 (40)
T 1z96_A 29 NGDLDVAASFL 39 (40)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67899999886
No 33
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=35.80 E-value=22 Score=24.26 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhch
Q 033011 14 RKRILHFALEGNALKAIELTEELAQ 38 (129)
Q Consensus 14 R~~I~~~I~~G~i~~Ai~~~~~~~p 38 (129)
-++|+++|..|+..+|+..+=++-|
T Consensus 39 ~~qv~~lL~~g~~~~ALk~~L~~pP 63 (151)
T 1k8k_G 39 EGEVDSCLRQGNMTAALQAALKNPP 63 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 5789999999999999999977776
No 34
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.46 E-value=40 Score=17.74 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=14.5
Q ss_pred HHHHHH-HHcCCHHHHHHHHHhh
Q 033011 15 KRILHF-ALEGNALKAIELTEEL 36 (129)
Q Consensus 15 ~~I~~~-I~~G~i~~Ai~~~~~~ 36 (129)
...+.+ ...|+++.|++|+-.+
T Consensus 24 ~~a~~AL~~~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 24 EHAMEALLNTSTMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHcC
Confidence 334443 3457999999998543
No 35
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.96 E-value=20 Score=20.86 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=16.6
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhh
Q 033011 14 RKRILHFAL--EGNALKAIELTEEL 36 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~ 36 (129)
+...+.+++ .||++.|++|+=.|
T Consensus 33 ~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 33 YECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 455555554 58899999998554
No 36
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.51 E-value=54 Score=18.74 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=17.8
Q ss_pred HHHHHHHHHc-C--CHHHHHHHHHhhch
Q 033011 14 RKRILHFALE-G--NALKAIELTEELAQ 38 (129)
Q Consensus 14 R~~I~~~I~~-G--~i~~Ai~~~~~~~p 38 (129)
|.+.++++.. | +++.|++|+-++-+
T Consensus 23 ~~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 23 VHTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 4556666653 3 79999999987753
No 37
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.03 E-value=1.2e+02 Score=22.19 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=21.4
Q ss_pred CCCCcccHHhHHHHHHHHHHHHcCCHHHHHHHHHh
Q 033011 1 MKQPANCLEDMEMRKRILHFALEGNALKAIELTEE 35 (129)
Q Consensus 1 ~~~p~~d~~~~~~R~~I~~~I~~G~i~~Ai~~~~~ 35 (129)
|..|..-++ +-+.++..|++++|++...+
T Consensus 1 ~s~p~~~l~------~a~~l~~~~~y~eA~~~~~~ 29 (434)
T 4b4t_Q 1 MSLPGSKLE------EARRLVNEKQYNEAEQVYLS 29 (434)
T ss_dssp CCSTTHHHH------HHHHHHHHTCHHHHHHHHHH
T ss_pred CCChHHHHH------HHHHHHHCCCHHHHHHHHHH
Confidence 556655443 45678899999999988765
No 38
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=33.96 E-value=41 Score=22.44 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCHHHHHH
Q 033011 13 MRKRILHFALEGNALKAIE 31 (129)
Q Consensus 13 ~R~~I~~~I~~G~i~~Ai~ 31 (129)
-|.+|.++|.+|++++|..
T Consensus 3 ~~~~I~~Ll~~g~~eeAf~ 21 (139)
T 2vxg_A 3 MGDSIKQLLMAGQINKAFH 21 (139)
T ss_dssp HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHH
Confidence 4677999999999999975
No 39
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=33.70 E-value=40 Score=21.61 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=16.6
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhh
Q 033011 14 RKRILHFAL--EGNALKAIELTEEL 36 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~ 36 (129)
|...+.++. .||++.|++|+-..
T Consensus 81 ~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 81 DELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 555566655 59999999988654
No 40
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=33.51 E-value=38 Score=23.63 Aligned_cols=25 Identities=8% Similarity=-0.035 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhcC
Q 033011 53 SLHFVELVCSRKCTEALEFAQTKLT 77 (129)
Q Consensus 53 ~q~fIELir~~~~~~Ai~~ar~~l~ 77 (129)
.+..++.|+.|+.+.|.+..+.|+.
T Consensus 193 H~~I~~Ai~~~D~~~A~~~m~~Hl~ 217 (239)
T 1hw1_A 193 YHKLSALCSEGAHDQVYETVRRYGH 217 (239)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567778888888888877777773
No 41
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.40 E-value=36 Score=18.31 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=16.7
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHhh
Q 033011 14 RKRILHFALE--GNALKAIELTEEL 36 (129)
Q Consensus 14 R~~I~~~I~~--G~i~~Ai~~~~~~ 36 (129)
|..++.+++. ||++.|++|+-..
T Consensus 22 ~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 22 RERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 5666666664 6889999998654
No 42
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.17 E-value=60 Score=24.81 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=34.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhchHHHccCcccchhhHHHHHHHHHh
Q 033011 15 KRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVC 61 (129)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIELir 61 (129)
...-+++..|+++.|+.++++.. .-+.|.-.++.|++.-.
T Consensus 21 ~laadhvaAGsFe~A~~lLnrQ~-------Givnf~PLk~~F~~~y~ 60 (320)
T 3mkr_B 21 QLPVDHILAGSFETAMRLLHDQV-------GVTQFGPYKQLFLQTYA 60 (320)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHHS-------CBCCCGGGHHHHHHHHT
T ss_pred CcHHHHHHccCHHHHHHHHHHHh-------CccCchhhHHHHHHHHH
Confidence 35789999999999999999877 56789999999999864
No 43
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.71 E-value=1.6e+02 Score=22.16 Aligned_cols=62 Identities=10% Similarity=0.149 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhchHHHccCc-ccchhhHHHHHHHHHhcCChHHHHHHHH
Q 033011 12 EMRKRILHFALEGNALKAIELTEELAQDLLEKNK-DLHFDLLSLHFVELVCSRKCTEALEFAQ 73 (129)
Q Consensus 12 ~~R~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~-~l~F~L~~q~fIELir~~~~~~Ai~~ar 73 (129)
+...+++..|.+|+.-+|.......+-+..+.+. +-.-.|..+--..+++.|....|...+.
T Consensus 15 r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 15 KTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHH
Confidence 4567899999999999999999888887776644 1223344444455555666555555443
No 44
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=32.19 E-value=50 Score=23.16 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Q 033011 12 EMRKRILHFALEGNALKAIELTEEL 36 (129)
Q Consensus 12 ~~R~~I~~~I~~G~i~~Ai~~~~~~ 36 (129)
.+=..|.++|.+||.+.|.+.+.++
T Consensus 194 ~eH~~I~~Ai~~~D~~~A~~~m~~H 218 (239)
T 2di3_A 194 KEHRAILAALRAGESTVAATLIKEH 218 (239)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344455555555555555544444
No 45
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.89 E-value=29 Score=19.21 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=15.9
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhh
Q 033011 14 RKRILHFAL--EGNALKAIELTEEL 36 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~ 36 (129)
+...+.++. +||++.|++|+-.+
T Consensus 24 ~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 24 REANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 344444443 69999999998765
No 46
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=31.81 E-value=26 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhc
Q 033011 15 KRILHFALEGNALKAIELTEELA 37 (129)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~~~~~~ 37 (129)
..||++|.+|+++.|-.++-..|
T Consensus 165 T~IR~~L~~G~i~~a~~lLGrpy 187 (338)
T 2x0k_A 165 TTVREFLSEGDVARANWALGRHF 187 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHTSCC
T ss_pred chHHHHHhcCcHHHHHHhcceee
Confidence 56999999999999999996654
No 47
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=31.61 E-value=1.5e+02 Score=22.22 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=31.8
Q ss_pred HHHcCCHHHHHHHHHhhchHHHccCc-ccchhhHHHHHHHHHhcCChHHHHHHHHH
Q 033011 20 FALEGNALKAIELTEELAQDLLEKNK-DLHFDLLSLHFVELVCSRKCTEALEFAQT 74 (129)
Q Consensus 20 ~I~~G~i~~Ai~~~~~~~p~ll~~~~-~l~F~L~~q~fIELir~~~~~~Ai~~ar~ 74 (129)
....|++++|+.|+.+. ++.++ .-...++...--=+++.|+.+.|.+..++
T Consensus 110 ~~~~g~~eeAL~~l~~~----i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 110 QAILGDLDKSLETCVEG----IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp HHHHTCHHHHHHHHHHH----HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34469999999999875 23322 12333333333334567888888888874
No 48
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.06 E-value=54 Score=18.66 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=16.2
Q ss_pred HHHHHHHHH--cC-CHHHHHHHHHhh
Q 033011 14 RKRILHFAL--EG-NALKAIELTEEL 36 (129)
Q Consensus 14 R~~I~~~I~--~G-~i~~Ai~~~~~~ 36 (129)
|.+.+.++. .| +++.|++|+-.+
T Consensus 33 ~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 33 RARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 455666655 34 899999999654
No 49
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.64 E-value=1.1e+02 Score=21.82 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=9.5
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 033011 16 RILHFALEGNALKAIELTE 34 (129)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~~~ 34 (129)
.|+.++-.|+...|+++++
T Consensus 5 ~~~~~~~~g~y~~ai~~~~ 23 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQ 23 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 50
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.59 E-value=58 Score=19.09 Aligned_cols=24 Identities=13% Similarity=-0.033 Sum_probs=17.2
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhc
Q 033011 14 RKRILHFAL--EGNALKAIELTEELA 37 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~~ 37 (129)
|.+.+.+++ .|+++.|++|+-.+.
T Consensus 43 ~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 43 EDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 555666665 578999999986643
No 51
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.39 E-value=1.1e+02 Score=21.76 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=8.6
Q ss_pred HHcCCHHHHHHHHHh
Q 033011 21 ALEGNALKAIELTEE 35 (129)
Q Consensus 21 I~~G~i~~Ai~~~~~ 35 (129)
...|++++|++++++
T Consensus 112 ~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 112 FYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHTTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHhC
Confidence 345666666666555
No 52
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=30.24 E-value=70 Score=22.57 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 033011 11 MEMRKRILHFALEGNALKAIELTEELA 37 (129)
Q Consensus 11 ~~~R~~I~~~I~~G~i~~Ai~~~~~~~ 37 (129)
+.+-..|.++|..||.+.|.+.+.++.
T Consensus 195 ~~eH~~I~~Ai~~~D~~~A~~~m~~Hl 221 (239)
T 2hs5_A 195 LTRNHEIYDALAAGNTEAAGQLLKTYL 221 (239)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455666666666666666555543
No 53
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=29.34 E-value=44 Score=26.57 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=19.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhh
Q 033011 13 MRKRILHFALEGNALKAIELTEEL 36 (129)
Q Consensus 13 ~R~~I~~~I~~G~i~~Ai~~~~~~ 36 (129)
.-.+|+++++.|+.++|++++-+.
T Consensus 153 ~~~~I~~~Ll~G~~e~Av~~al~~ 176 (441)
T 3mzk_B 153 CQMRVLAFLQTGNHDEALRLALSK 176 (441)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Confidence 346789999999999999988663
No 54
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.15 E-value=67 Score=24.61 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhchHHHccCcccchhhHHHHHHHHHh
Q 033011 15 KRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVC 61 (129)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIELir 61 (129)
...-+.+..|+++.|+.++++.. .-+.|.-.++.|++.-.
T Consensus 33 ~laadhvAAGsFetAm~lLnrQv-------Givnf~PLk~~F~~~y~ 72 (325)
T 3mv2_A 33 KLPAVLVAAGAFDAAVQALSKQV-------GVVKLEPLKKYFTNIYE 72 (325)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHHH-------CBCCCGGGHHHHHHHHH
T ss_pred CcHHHHHHccCHHHHHHHHHHHh-------CccCchhhHHHHHHHHH
Confidence 45678999999999999999876 56789999999999854
No 55
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.02 E-value=64 Score=16.48 Aligned_cols=13 Identities=8% Similarity=-0.049 Sum_probs=10.7
Q ss_pred cCCHHHHHHHHHh
Q 033011 23 EGNALKAIELTEE 35 (129)
Q Consensus 23 ~G~i~~Ai~~~~~ 35 (129)
+|+++.|++|+-.
T Consensus 29 ~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 29 NWDLEAATNFLLD 41 (43)
T ss_dssp TSCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHc
Confidence 6899999999854
No 56
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=28.81 E-value=81 Score=17.62 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=35.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhchHHHccCcccchhhHHHHHHHHHhcCChHHHHHHHHHhcC
Q 033011 15 KRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (129)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l~ 77 (129)
..-...+..|+++.|++.+++.- +.++.-.-..+...=.-+...|+..+|+.+.++-+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFL----QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH----HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556788999999999987642 222221110112222223456899999999887654
No 57
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.56 E-value=47 Score=18.76 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=17.2
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhch
Q 033011 14 RKRILHFAL--EGNALKAIELTEELAQ 38 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~~p 38 (129)
|...+.+++ .|+++.|++|+-.+.+
T Consensus 23 ~~~a~~AL~~t~~nve~A~e~L~~~~~ 49 (63)
T 2dak_A 23 RDQALKALRATNNSLERAVDWIFSHID 49 (63)
T ss_dssp HHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 444555544 4689999999987654
No 58
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.55 E-value=72 Score=18.11 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=15.2
Q ss_pred HHHHHHHH--cCCHHHHHHHHHhhc
Q 033011 15 KRILHFAL--EGNALKAIELTEELA 37 (129)
Q Consensus 15 ~~I~~~I~--~G~i~~Ai~~~~~~~ 37 (129)
.+.+.++. .|+++.|++|+-.+.
T Consensus 24 ~~a~~AL~~~~~nve~A~e~L~~~~ 48 (63)
T 1wji_A 24 EASRQALMDNGNNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 34444443 478999999987654
No 59
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=27.79 E-value=1.8e+02 Score=21.18 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=13.8
Q ss_pred HHHHHHcCCHHHHHHHHHhh
Q 033011 17 ILHFALEGNALKAIELTEEL 36 (129)
Q Consensus 17 I~~~I~~G~i~~Ai~~~~~~ 36 (129)
..-....|+++.|+.++++.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44556678888888777654
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=27.50 E-value=1.5e+02 Score=20.12 Aligned_cols=60 Identities=12% Similarity=0.027 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhchHHHccCcccchhhHHHHHHHHHhcCChHHHHHHHHH
Q 033011 14 RKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQT 74 (129)
Q Consensus 14 R~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~ 74 (129)
...-......|+++.|+.++++.-.. ...++.....+....-.-....|+..+|+.+.++
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQV-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33445567778888888887764332 1111111112222222223345666666666554
No 61
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=27.16 E-value=1.3e+02 Score=19.59 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=31.6
Q ss_pred HHHHHHcCCHHHHHHHHHhhchHHHccCcccchhhHHHHHHHHHhcCChHHHHHHHHHhcC
Q 033011 17 ILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (129)
Q Consensus 17 I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l~ 77 (129)
-.-....|+++.|++.+++... .++. ........-.-+.+.|+..+|+.+.++-+.
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIK----RAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH----HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHh----cCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3345677899999888876432 1121 011122222223456788888888776554
No 62
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.68 E-value=65 Score=19.55 Aligned_cols=24 Identities=17% Similarity=-0.082 Sum_probs=16.1
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHhhc
Q 033011 14 RKRILHFALE--GNALKAIELTEELA 37 (129)
Q Consensus 14 R~~I~~~I~~--G~i~~Ai~~~~~~~ 37 (129)
|...++++.. |+++.|++|+-.+.
T Consensus 35 ~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 35 REPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 4555555554 66888888887654
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=26.32 E-value=1.5e+02 Score=20.95 Aligned_cols=60 Identities=12% Similarity=0.033 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhchHHHccCcccchhhHHHHHHHHHhcCChHHHHHHHHHh
Q 033011 15 KRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTK 75 (129)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~ 75 (129)
..-......|+++.|+.++++.-.. ...++.....+....-.-....|+..+|+.+.++-
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 73 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQV-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 73 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3344567789999999888764322 11122111222222223334567777777766643
No 64
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.20 E-value=42 Score=18.85 Aligned_cols=14 Identities=21% Similarity=0.378 Sum_probs=11.3
Q ss_pred cCC--HHHHHHHHHhh
Q 033011 23 EGN--ALKAIELTEEL 36 (129)
Q Consensus 23 ~G~--i~~Ai~~~~~~ 36 (129)
.|+ +++|++|+.+.
T Consensus 33 Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 33 TGSRSIEAALEYISKM 48 (54)
T ss_dssp HTSCCHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHh
Confidence 466 99999999774
No 65
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=26.02 E-value=34 Score=24.34 Aligned_cols=47 Identities=26% Similarity=0.191 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHhhchH---------------------------HHccCcccchhhHHHHHHHHHhcCChHHHHHHHH
Q 033011 23 EGNALKAIELTEELAQD---------------------------LLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQ 73 (129)
Q Consensus 23 ~G~i~~Ai~~~~~~~p~---------------------------ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar 73 (129)
+||++.|++|+.+..-. +.+-|..-.|.-+-..|.++.+ +-|++.|-
T Consensus 29 ~GD~ekAie~LR~kG~akAaKka~R~aaEGlV~~~i~~~~~~gvlvEvNcETDFVArn~~F~~lak----diAMhiAA 102 (196)
T 1aip_C 29 GWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAK----DLAMHIAM 102 (196)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEECSSHHHHTSHHHHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCchhhHhccccccCCeEEEEEecCCCEEEEEEEecCCccccCCHHHHHHHH----HHHHHHHH
Confidence 59999999999884322 2334556679899999999955 34555554
No 66
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=25.37 E-value=1.1e+02 Score=18.04 Aligned_cols=61 Identities=8% Similarity=-0.047 Sum_probs=28.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhhchHHHcc-CcccchhhHHHHHHHHHhcCChHHHHHHHHHhc
Q 033011 16 RILHFALEGNALKAIELTEELAQDLLEK-NKDLHFDLLSLHFVELVCSRKCTEALEFAQTKL 76 (129)
Q Consensus 16 ~I~~~I~~G~i~~Ai~~~~~~~p~ll~~-~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l 76 (129)
.-.-....|+++.|++.+.+......+. ++..........=.-....|+.++|+.+.++-+
T Consensus 55 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445566777777777776643333222 111112222222222333466666666655444
No 67
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.28 E-value=91 Score=18.25 Aligned_cols=26 Identities=12% Similarity=-0.037 Sum_probs=18.1
Q ss_pred HHHHHHHHHc--C-CHHHHHHHHHhhchH
Q 033011 14 RKRILHFALE--G-NALKAIELTEELAQD 39 (129)
Q Consensus 14 R~~I~~~I~~--G-~i~~Ai~~~~~~~p~ 39 (129)
|.+.+++++. | +++.|++|+-++.+.
T Consensus 23 ~~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 23 MDACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 4555666554 3 699999999887653
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=25.00 E-value=1.6e+02 Score=19.83 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhchHHHcc---CcccchhhHHHHHHHHHhcCChHHHHHHHHHhcC
Q 033011 14 RKRILHFALEGNALKAIELTEELAQDLLEK---NKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (129)
Q Consensus 14 R~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~---~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l~ 77 (129)
.....-....|+++.|+.++.+......+. +...........-.-+...|+..+|+.+.++-+.
T Consensus 31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344456778999999999998765433322 1222222222223334466888888887776553
No 69
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=24.78 E-value=61 Score=19.43 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 033011 110 LSLEYRQHVADNLNRAIL 127 (129)
Q Consensus 110 l~~~~r~~la~~vn~aiL 127 (129)
..+++|..+|+.|-.|+.
T Consensus 48 V~~~qR~~iAe~Fa~AL~ 65 (76)
T 2jr2_A 48 VPESKRVAVVDNFTKALK 65 (76)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 478999999999999875
No 70
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.77 E-value=1.2e+02 Score=20.47 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=26.9
Q ss_pred CcccHHhHHHHHH--HHHHHHcCCHHHHHHHHHhhc
Q 033011 4 PANCLEDMEMRKR--ILHFALEGNALKAIELTEELA 37 (129)
Q Consensus 4 p~~d~~~~~~R~~--I~~~I~~G~i~~Ai~~~~~~~ 37 (129)
|..+.+.++.+.. |.+....||+++|+.-+++..
T Consensus 2 p~~s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 2 LPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4555666666544 889999999999999999876
No 71
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.13 E-value=54 Score=19.80 Aligned_cols=25 Identities=20% Similarity=0.082 Sum_probs=17.4
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhch
Q 033011 14 RKRILHFAL--EGNALKAIELTEELAQ 38 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~~p 38 (129)
|.+.+.++. +|+++.|++|+-++..
T Consensus 43 ~~~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 43 ENRATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 344455544 5789999999987653
No 72
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.68 E-value=95 Score=18.84 Aligned_cols=25 Identities=12% Similarity=-0.121 Sum_probs=18.5
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhhch
Q 033011 14 RKRILHFAL--EGNALKAIELTEELAQ 38 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~~p 38 (129)
|..++.+++ .|+++.|++|+-.+.-
T Consensus 43 ~~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 43 TVVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 566666665 4789999999987654
No 73
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=23.46 E-value=1.7e+02 Score=19.48 Aligned_cols=17 Identities=12% Similarity=-0.175 Sum_probs=8.5
Q ss_pred HHHcCCHHHHHHHHHhh
Q 033011 20 FALEGNALKAIELTEEL 36 (129)
Q Consensus 20 ~I~~G~i~~Ai~~~~~~ 36 (129)
....|+++.|++.+++.
T Consensus 47 ~~~~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 47 YYELAKYDLAQKDIETY 63 (272)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 33455555555555443
No 74
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=23.33 E-value=67 Score=19.46 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 033011 110 LSLEYRQHVADNLNRAIL 127 (129)
Q Consensus 110 l~~~~r~~la~~vn~aiL 127 (129)
..+++|..+|+.|-.|+.
T Consensus 49 V~~~qR~~iAe~Fa~AL~ 66 (80)
T 2juw_A 49 VPSESRQAVAEQFAKALA 66 (80)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 468999999999998875
No 75
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=23.12 E-value=71 Score=20.45 Aligned_cols=16 Identities=13% Similarity=-0.139 Sum_probs=12.9
Q ss_pred cCCHHHHHHHHHhhch
Q 033011 23 EGNALKAIELTEELAQ 38 (129)
Q Consensus 23 ~G~i~~Ai~~~~~~~p 38 (129)
+++++.|++|+-.+.+
T Consensus 29 n~~~e~A~~wL~~~~~ 44 (126)
T 2lbc_A 29 NMGAEVAFNWIIVHME 44 (126)
T ss_dssp SCCHHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHhcc
Confidence 3479999999988754
No 76
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=22.88 E-value=69 Score=19.53 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 033011 110 LSLEYRQHVADNLNRAIL 127 (129)
Q Consensus 110 l~~~~r~~la~~vn~aiL 127 (129)
..+++|..+|+.|-.|+.
T Consensus 49 V~~~qR~~iAe~Fa~AL~ 66 (83)
T 2jpq_A 49 VAASQRKLIAEKFAQALM 66 (83)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 468999999999999875
No 77
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.40 E-value=86 Score=18.46 Aligned_cols=23 Identities=13% Similarity=0.117 Sum_probs=14.9
Q ss_pred HHHHHHHHH--cCCHHHHHHHHHhh
Q 033011 14 RKRILHFAL--EGNALKAIELTEEL 36 (129)
Q Consensus 14 R~~I~~~I~--~G~i~~Ai~~~~~~ 36 (129)
|..++.++. .||++.|++|+-.+
T Consensus 43 r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 43 RTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 445555544 47888888887543
No 78
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=22.27 E-value=42 Score=25.23 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHh----hch-------------------------HHHccCcccchhhHHHHHHHHHhc
Q 033011 23 EGNALKAIELTEE----LAQ-------------------------DLLEKNKDLHFDLLSLHFVELVCS 62 (129)
Q Consensus 23 ~G~i~~Ai~~~~~----~~p-------------------------~ll~~~~~l~F~L~~q~fIELir~ 62 (129)
+||++.|++|+.+ ..- .+.+-|..-.|.=+-..|+.+++.
T Consensus 30 ~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNcETDFVArN~~F~~l~~~ 98 (291)
T 1xb2_B 30 GGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQ 98 (291)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEESCHHHHTSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEecccceeeCCHHHHHHHHH
Confidence 6999999999997 221 133445667799999999999874
No 79
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=22.20 E-value=29 Score=21.61 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHhhchHHHccCcccchhhHH
Q 033011 23 EGNALKAIELTEELAQDLLEKNKDLHFDLLS 53 (129)
Q Consensus 23 ~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~ 53 (129)
.|.-..+.+.+..++|.+...||.+.|.++.
T Consensus 30 ~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~ 60 (102)
T 1s3a_A 30 SPGSQGVRDFIEKRYVELKKANPDLPILIRE 60 (102)
T ss_dssp SCCCHHHHHHHHHTHHHHHHHSTTCCEEEEC
T ss_pred CCCchhHHHHHHHhhHHHHHHCCCceEEEEE
Confidence 3556788899999999999999999987653
No 80
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=22.05 E-value=1.1e+02 Score=16.95 Aligned_cols=58 Identities=14% Similarity=-0.046 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhchHHHccCcccchhhHHHHHHHHHhcCChHHHHHHHHHhcC
Q 033011 15 KRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (129)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l~ 77 (129)
.........|+++.|+..+++.... ...+....+.+ =.-....|+..+|+.+.++-+.
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~----a~~~~~~~~~~~A~~~~~~~~~ 66 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNR----SAAYAKKGDYQKAYEDGCKTVD 66 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHH----HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH-CCCcHHHHHHH----HHHHHhhccHHHHHHHHHHHHH
Confidence 3445567788888888888764321 11111111111 1122345778888877776553
No 81
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=21.87 E-value=1.1e+02 Score=20.95 Aligned_cols=42 Identities=5% Similarity=-0.118 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCHHHHHHHHH--hhchHHHccCcccchhhHHHHHHHHHhcCCh
Q 033011 15 KRILHFALEGNALKAIELTE--ELAQDLLEKNKDLHFDLLSLHFVELVCSRKC 65 (129)
Q Consensus 15 ~~I~~~I~~G~i~~Ai~~~~--~~~p~ll~~~~~l~F~L~~q~fIELir~~~~ 65 (129)
..+..+|..||+..|-.-+. .++-+.- =|..++++++|+|..
T Consensus 138 ~~ml~~ln~gd~~~Aa~Em~dSrW~kQt~---------~Ra~rl~~~mr~G~~ 181 (187)
T 4e97_A 138 TNVLRMLQQKRWDEAAVNLAKSRWYNQCP---------DRAKRVITTFRTGTW 181 (187)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSHHHHHSH---------HHHHHHHHHHHHSSS
T ss_pred HHHHHHHHcCCHHHHHHHHHhchhhccCc---------HHHHHHHHHHHcCCh
Confidence 35788999999998877664 3443221 267888888888854
No 82
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=21.59 E-value=1e+02 Score=22.39 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCcCCchhHHHHHHHHHhHhccCCCCCCc--hhhhCC-HHHHHHHHHHHH
Q 033011 68 ALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSP--MFHLLS-LEYRQHVADNLN 123 (129)
Q Consensus 68 Ai~~ar~~l~~~~~~~~~~~~l~~~~~lLay~~~~~sp--~~~Ll~-~~~r~~la~~vn 123 (129)
-.+||++|-.....||.+..+|++.|..+--+++..+. ++.++. .+...+||-+|-
T Consensus 23 L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIv 81 (234)
T 3cuq_A 23 LEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQII 81 (234)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccccCHHHHHHHHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHH
Confidence 34677777666666889999999999988888444332 344454 334466666554
No 83
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=20.84 E-value=1.2e+02 Score=16.71 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=26.8
Q ss_pred HHHHcCCHHHHHHHHHhhchHHHccCcccchhhHHHHHHHHHhcCChHHHHHHHHHhcC
Q 033011 19 HFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLT 77 (129)
Q Consensus 19 ~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~~Ai~~ar~~l~ 77 (129)
-....|+++.|+..+++.-.. ...+....+ ..=.-+...|+.++|+.+.++-+.
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~----~~a~~~~~~~~~~~A~~~~~~a~~ 68 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQL-DPEESKYWL----MKGKALYNLERYEEAVDCYNYVIN 68 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHH-CCCCHHHHH----HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHh-CcCCHHHHH----HHHHHHHHccCHHHHHHHHHHHHH
Confidence 345677788877777653211 111111111 111223345677777777765554
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=20.66 E-value=1.3e+02 Score=21.57 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=12.8
Q ss_pred HHHHcCCHHHHHHHHHhh
Q 033011 19 HFALEGNALKAIELTEEL 36 (129)
Q Consensus 19 ~~I~~G~i~~Ai~~~~~~ 36 (129)
-.+..|+++.|+.++.+.
T Consensus 23 ~~~~~g~~~~A~~~~~~a 40 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLA 40 (373)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 345678888888887653
No 85
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=20.49 E-value=92 Score=21.96 Aligned_cols=28 Identities=11% Similarity=0.057 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhch
Q 033011 11 MEMRKRILHFALEGNALKAIELTEELAQ 38 (129)
Q Consensus 11 ~~~R~~I~~~I~~G~i~~Ai~~~~~~~p 38 (129)
+.+-..|.++|..||.+.|...+..+.-
T Consensus 192 ~~eH~~I~~Ai~~~D~~~A~~~m~~Hl~ 219 (237)
T 3c7j_A 192 QDDHWQLLRLAEQKAVEPCVEALQYHLN 219 (237)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556789999999999999999988754
No 86
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=20.40 E-value=1.4e+02 Score=17.30 Aligned_cols=57 Identities=12% Similarity=-0.026 Sum_probs=33.8
Q ss_pred HHHHHHcCCHHHHHHHHHhhchHHHccCcccch--hhHHHHHHHHHhcCChHHHHHHHHHhcC
Q 033011 17 ILHFALEGNALKAIELTEELAQDLLEKNKDLHF--DLLSLHFVELVCSRKCTEALEFAQTKLT 77 (129)
Q Consensus 17 I~~~I~~G~i~~Ai~~~~~~~p~ll~~~~~l~F--~L~~q~fIELir~~~~~~Ai~~ar~~l~ 77 (129)
-......|+++.|++.+...- +.+++-.+ ......-.-..+.|+..+|+.+.++-+.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFL----ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH----HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345678899999998887532 22222111 1122222233467889999988886654
No 87
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=20.24 E-value=1.5e+02 Score=21.40 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCcCCchhHHHHHHHHHhHhccCCCCC-Cch-hhhCCH-HHHHHHHHHHHH
Q 033011 67 EALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEK-SPM-FHLLSL-EYRQHVADNLNR 124 (129)
Q Consensus 67 ~Ai~~ar~~l~~~~~~~~~~~~l~~~~~lLay~~~~~-sp~-~~Ll~~-~~r~~la~~vn~ 124 (129)
.-.+||++|-.....||.+..+|++.|..+--+ |-. |+- +.++.. +...+||-+|-.
T Consensus 42 ~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVD-PLa~s~kg~~~lg~gdfy~eLavqIvE 101 (233)
T 1u5t_A 42 RLVEFAKKHNSELQASPEFRSKFMHMCSSIGID-PLSLFDRDKHLFTVNDFYYEVCLKVIE 101 (233)
T ss_dssp HHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCC-HHHHTTSSGGGTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCC-CCccCCccccccCcchHHHHHHHHHHH
Confidence 345789999888888999999999999988877 332 322 455543 345677766543
No 88
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=20.07 E-value=53 Score=20.02 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHhhch
Q 033011 11 MEMRKRILHFALEGNALKAI-ELTEELAQ 38 (129)
Q Consensus 11 ~~~R~~I~~~I~~G~i~~Ai-~~~~~~~p 38 (129)
-+-|..|++.|..|+-+..| +++.+.|.
T Consensus 46 ~dlR~~V~~~l~~G~sd~eI~~~~v~RYG 74 (84)
T 2hl7_A 46 ADLRKQIYGQLQQGKSDGEIVDYMVARYG 74 (84)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhcC
Confidence 45689999999999987654 55555553
Done!