Query 033012
Match_columns 129
No_of_seqs 111 out of 1032
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:09:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_W 40S ribosomal protein S 100.0 1.8E-54 6.1E-59 310.7 12.4 129 1-129 1-130 (130)
2 1i6u_A 30S ribosomal protein S 100.0 8E-54 2.7E-58 307.3 12.5 129 1-129 1-130 (130)
3 2xzm_H Ribosomal protein S8 co 100.0 5.9E-54 2E-58 308.0 9.7 129 1-129 1-130 (130)
4 2vqe_H 30S ribosomal protein S 100.0 2.7E-50 9.1E-55 291.4 11.3 122 1-129 1-138 (138)
5 3bbn_H Ribosomal protein S8; s 100.0 1.1E-49 3.7E-54 287.0 12.6 120 1-129 1-134 (134)
6 1sei_A Ribosomal protein S8; p 100.0 3.2E-49 1.1E-53 283.4 12.4 119 3-129 3-130 (130)
7 1s03_H 30S ribosomal protein S 100.0 1.3E-48 4.4E-53 279.9 12.6 118 3-129 3-129 (129)
8 3rf2_A 30S ribosomal protein S 100.0 4.4E-48 1.5E-52 287.2 10.8 122 1-129 1-168 (168)
9 2hgc_A YJCQ protein; SR346, st 55.0 3.8 0.00013 27.4 0.8 23 32-54 32-54 (102)
10 2zqe_A MUTS2 protein; alpha/be 50.3 44 0.0015 20.8 6.8 60 5-65 17-82 (83)
11 3qd7_X Uncharacterized protein 38.8 92 0.0031 21.3 6.9 63 5-67 60-133 (137)
12 1a6s_A GAG polyprotein; core p 35.3 20 0.00068 23.0 1.9 22 28-49 21-42 (87)
13 2zrr_A Mundticin KS immunity p 33.3 17 0.00058 24.9 1.4 43 4-47 55-97 (118)
14 2k19_A Putative piscicolin 126 25.3 14 0.00049 24.5 -0.1 43 4-47 35-77 (98)
15 2heo_A Z-DNA binding protein 1 20.9 42 0.0014 19.7 1.5 18 31-48 40-57 (67)
No 1
>3u5c_W 40S ribosomal protein S22-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_H 3o30_O 3o2z_O 3u5g_W 1s1h_H 3jyv_H* 3iz6_H 2zkq_h
Probab=100.00 E-value=1.8e-54 Score=310.67 Aligned_cols=129 Identities=48% Similarity=0.822 Sum_probs=125.1
Q ss_pred CCC-cHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCCCcceEEEEEccccCCCCcccccee
Q 033012 1 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQD 79 (129)
Q Consensus 1 M~~-d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy 79 (129)
|+. |+||||||+||||++++|++|.++|+||++.+||++|++||||++|++.++++++++||+|||+.++|++||||+|
T Consensus 1 m~~~d~iad~lt~IrNA~~~~~~~v~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lk~r~~k~~~ISpR~y 80 (130)
T 3u5c_W 1 MTRSSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFEYIDDHRSGKIVVQLNGRLNKCGVISPRFN 80 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEEECSCCHHHHHHHHHHHTTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCB
T ss_pred CCcccHHHHHHHHhHHHHHcCCceEEEecCCHHHHHHHHHHHHCCCccceeeeccCCCceEEEEEccccCCCCeEEccee
Confidence 774 9999999999999999999998779999999999999999999999999998899999999999999999999999
Q ss_pred ccccchhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEEC
Q 033012 80 VKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 80 ~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v~ 129 (129)
++.+|||+|.+|++|++|+|++|||||+|||||+|||++++|||+|||||
T Consensus 81 ~~~~el~kv~~g~lp~~~~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~ 130 (130)
T 3u5c_W 81 VKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130 (130)
T ss_dssp CCSSHHHHHHHHHCSCSSSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred cCHHHhHHHHcCCCCCCCceEEEEEcCCCceeHHHHHHhCCCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999998
No 2
>1i6u_A 30S ribosomal protein S8P; protein-RNA interactions, ribosome, RNA, X-RAY crystallography; 2.60A {Methanocaldococcus jannaschii} SCOP: d.140.1.1
Probab=100.00 E-value=8e-54 Score=307.29 Aligned_cols=129 Identities=37% Similarity=0.673 Sum_probs=124.3
Q ss_pred CCC-cHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCCCcceEEEEEccccCCCCcccccee
Q 033012 1 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQD 79 (129)
Q Consensus 1 M~~-d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy 79 (129)
|++ ||||||||+||||++++|++|.+.|+||++.+||++|++||||++|++.+++.++++||+|||+.+++++||||+|
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~y 80 (130)
T 1i6u_A 1 MSLMDPLANALNHISNCERVGKKVVYIKPASKLIGRVLKVMQDNGYIGEFEFIEDGRAGIFKVELIGKINKCGAIKPRFP 80 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTSSCCEEEECCSSSCEEEEECCSCCSCEEECSSCCE
T ss_pred CCccCHHHHHHHHhHHHHHcCCCEEEEECchHHHHHHHHHHHHCCccccEEEEecCCceEEEEEEeeecccCCEEECCee
Confidence 775 9999999999999999999999669999999999999999999999988877788999999999999999999999
Q ss_pred ccccchhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEEC
Q 033012 80 VKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 80 ~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v~ 129 (129)
++.+|||+|.++++|++|+|++|||||+|||||+||+++++|||+||+||
T Consensus 81 ~~~~~l~kv~~~~lp~~g~G~~IlSTs~Gimt~~eAr~~~vGGevL~~v~ 130 (130)
T 1i6u_A 81 VKKFGYEKFEKRYLPARDFGILIVSTTQGVMSHEEAKKRGLGGRLLAYVY 130 (130)
T ss_dssp ECTTCCHHHHHHHCSSTTCCEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred cChhhhHHHHhccCCCCCceEEEEECCcCceeHHHHHHcCCCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999
No 3
>2xzm_H Ribosomal protein S8 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_H
Probab=100.00 E-value=5.9e-54 Score=307.96 Aligned_cols=129 Identities=46% Similarity=0.801 Sum_probs=124.5
Q ss_pred CCC-cHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCCCcceEEEEEccccCCCCcccccee
Q 033012 1 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLTYRQD 79 (129)
Q Consensus 1 M~~-d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lky~~~k~~~IspRvy 79 (129)
|++ ||||||||+||||++++|++|.+.|+||++.+||++|++||||++|++.+++.++++||+|||..+++++||||+|
T Consensus 1 M~~~d~iad~lt~IrNA~~~~~~~V~i~P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~i~~~~~IS~R~y 80 (130)
T 2xzm_H 1 MVKVNILAECLKDLVNAEKMGKKQVLLRPVSKVVLKFLRIMQKNGYIGEFEVIDDHRSKKVVVELIGRINKCGVISPRYD 80 (130)
T ss_dssp -CCCCHHHHHHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHTSSCCEEEECCSSSCEEEEECCSCCCCEEECTTCCB
T ss_pred CCccCHHHHHHHHhHHHHHcCCCEEEEEcchHHHHHHHHHHHHCCCcceEEEEecCCceEEEEEEecccccCcEEECcee
Confidence 775 9999999999999999999999669999999999999999999999998887788999999999999999999999
Q ss_pred ccccchhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEEC
Q 033012 80 VKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 80 ~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v~ 129 (129)
++.+|||+|.++++|++|+|++|||||+|||||+||+++++|||+||+||
T Consensus 81 ~~~~~l~kv~~~~lp~~g~Gi~IlSTs~Gimt~~eAr~~~vGGevL~~v~ 130 (130)
T 2xzm_H 81 VPLADFEKWTNNILPSRQFGNVVLTTTYGILTHEECRKRHTGGKILGFFY 130 (130)
T ss_dssp CCGGGHHHHHHHHSSSTTCCCCCEECSSCEECTTHHHHTTCCCEECEEEC
T ss_pred CCHHHhHHHHhccCCCCCceEEEEECCccceeHHHHHHcCCCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999
No 4
>2vqe_H 30S ribosomal protein S8, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.140.1.1 PDB: 1eg0_E* 1fka_H 1gix_K* 1hnw_H* 1hnx_H* 1hnz_H* 1hr0_H 1ibk_H* 1ibl_H* 1ibm_H 1j5e_H 1jgo_K* 1jgp_K* 1jgq_K* 1ml5_K* 1n32_H* 1n33_H* 1n34_H 1n36_H 1pns_H ...
Probab=100.00 E-value=2.7e-50 Score=291.44 Aligned_cols=122 Identities=26% Similarity=0.320 Sum_probs=116.4
Q ss_pred CCCcHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCCCcceEEEEEccccCC-------CCc
Q 033012 1 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVND-------CRG 73 (129)
Q Consensus 1 M~~d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lky~~~k-------~~~ 73 (129)
|.+||||||||+||||++++|.+|.+ |+||++.+||++|++||||++|++.+++.++.++|+|||+.++ +|+
T Consensus 1 m~~d~iad~ltrIrNA~~~~k~~V~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~~~~~~~~~~~v 79 (138)
T 2vqe_H 1 MLTDPIADMLTRIRNATRVYKESTDV-PASRFKEEILRILAREGFIKGYERVDVDGKPYLRVYLKYGPRRQGPDPRPEQV 79 (138)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCSCCCC-BCCHHHHHHHHHHHHTTSSSEEEEEEETTEEEEEEECCBCCCCSSSCCCCCBS
T ss_pred CccchHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHHcCcceeEEEEecCCceEEEEEEecCcCCccccccCCcc
Confidence 76799999999999999999999997 9999999999999999999999988777788999999997777 899
Q ss_pred cc-------c--ceeccccchhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEEC
Q 033012 74 LT-------Y--RQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 74 Is-------p--Rvy~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v~ 129 (129)
|+ | |+|++.+|||+|.+ |+|++|||||+|||||+||+++++|||+||+||
T Consensus 80 I~~ikriSkPg~Riy~~~~~lpkv~~------g~Gi~IlSTskGimt~~eAr~~~vGGEvLc~v~ 138 (138)
T 2vqe_H 80 IHHIRRISKPGRRVYVGVKEIPRVRR------GLGIAILSTSKGVLTDREARKLGVGGELICEVW 138 (138)
T ss_dssp CSCEEECSBTTBCCEECGGGCCCGGG------GTSEEEEEETTEEEEHHHHHHTTCCEEEEEEEC
T ss_pred ccccEEecCCCcceEeCHHHHHHHhC------CceEEEEECCCCceeHHHHHHcCCCCEEEEEEC
Confidence 98 6 99999999999997 799999999999999999999999999999999
No 5
>3bbn_H Ribosomal protein S8; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.1e-49 Score=287.02 Aligned_cols=120 Identities=21% Similarity=0.345 Sum_probs=114.6
Q ss_pred CCCcHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcC-CCcceEEEEEccccCCCCccc----
Q 033012 1 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDP-HRVGKIKVELLGRVNDCRGLT---- 75 (129)
Q Consensus 1 M~~d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~-~~~~~i~I~Lky~~~k~~~Is---- 75 (129)
|.+||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++.++ +. ++++|+||| .+++|+|+
T Consensus 1 m~~d~iad~lt~IrNA~~~~k~~V~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~-~~i~v~Lky-~~~~~vI~p~~~ 77 (134)
T 3bbn_H 1 MGKDTIADIITCIRNADMNRKGTVRI-VSTNITENIVKILLREGFIENARKHQERNK-YFLVLTLRH-RRNKKGPYLNTF 77 (134)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHTHHHHTTTSSSCEEEEESSSC-EEEEEECCB-CCCSSSCCBSCS
T ss_pred CcccHHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHHCCcceeEEEEecCCC-cEEEEEEec-CCCCceeecccc
Confidence 76799999999999999999999998 999999999999999999999998877 66 899999999 67789998
Q ss_pred -------c--ceeccccchhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEEC
Q 033012 76 -------Y--RQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 76 -------p--Rvy~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v~ 129 (129)
| |+|++.++||+|.+ |+|++|||||+|||||+||+++++|||+||+||
T Consensus 78 ~ikriSkPg~Riy~~~~~lpkv~~------g~Gi~IlSTskGimt~~eAr~~~vGGevLc~v~ 134 (134)
T 3bbn_H 78 HLKRVSRPGLRIYSNYQRIPRILG------GMGIAILSTSRGIMTDREARLEGIGGEILCYIW 134 (134)
T ss_dssp CEEESSBTTBCCEECSSSCCCGGG------TTSEEEEEESSSEECTTHHHHHTCCEEEEEEEC
T ss_pred ccEEecCCCcceEcCHHHHHHHhC------CceEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence 4 99999999999997 799999999999999999999999999999999
No 6
>1sei_A Ribosomal protein S8; prokaryotic, rRNA-binding; 1.90A {Geobacillus stearothermophilus} SCOP: d.140.1.1
Probab=100.00 E-value=3.2e-49 Score=283.36 Aligned_cols=119 Identities=29% Similarity=0.453 Sum_probs=113.5
Q ss_pred CcHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCCCcceEEEEEccccCCCCccc-------
Q 033012 3 RRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLT------- 75 (129)
Q Consensus 3 ~d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lky~~~k~~~Is------- 75 (129)
+||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++.+++.+++++|+|||+.+ +|+|+
T Consensus 3 ~d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~eGyI~~~~~~~~~~~~~i~v~Lky~~~-~~vI~~i~rISk 80 (130)
T 1sei_A 3 TDPIADMLTAIRNANMVRHEKLEV-PASKIKREIAEILKREGFIRDYEYIEDNKQGILRIFLKYGPN-ERVITGLKRISK 80 (130)
T ss_dssp SHHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEEEESSSCEEEEEEECBSSS-SBSCCCEEECCB
T ss_pred cChHHHHHHHhHHHHHcCCCEEEe-cCcHHHHHHHHHHHHCCCceeEEEEecCCccEEEEEEecCCC-CcceeeeEEEcC
Confidence 499999999999999999999998 999999999999999999999998888778899999999866 78887
Q ss_pred c--ceeccccchhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEEC
Q 033012 76 Y--RQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 76 p--Rvy~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v~ 129 (129)
| |+|++.+|||+|.+ |+|++|||||+|||||+||+++++|||+||+||
T Consensus 81 Pg~R~y~~~~~l~~v~~------g~Gi~IlSTskGimt~~eAr~~~vGGevL~~v~ 130 (130)
T 1sei_A 81 PGLRVYVKAHEVPRVLN------GLGIAILSTSQGVLTDKEARQKGTGGEIIAYVI 130 (130)
T ss_dssp TTBCCEECGGGCCCCCT------TSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCCeeEcCHHHHHHHhC------CCeEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence 6 99999999999997 799999999999999999999999999999999
No 7
>1s03_H 30S ribosomal protein S8; protein-RNA complex, SPC operon, transcription-RN; 2.70A {Escherichia coli} SCOP: d.140.1.1 PDB: 1p6g_H 1p87_H 2avy_H 2aw7_H 2i2p_H 2i2u_H 2qal_H* 2qan_H* 2qb9_H* 2qbb_H* 2qbd_H 2qbf_H 2qbh_H* 2qbj_H* 2qou_H* 2qow_H* 2qoy_H* 2qp0_H* 2vho_H 2vhp_H ...
Probab=100.00 E-value=1.3e-48 Score=279.90 Aligned_cols=118 Identities=23% Similarity=0.386 Sum_probs=111.9
Q ss_pred CcHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCCCcceEEEEEccccCCCCccc-------
Q 033012 3 RRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRGLT------- 75 (129)
Q Consensus 3 ~d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~~~~~i~I~Lky~~~k~~~Is------- 75 (129)
+||||||||+||||++++|++|.+ |+||++.+||++|++||||++|++ +++.++++||+||| .+++|+|+
T Consensus 3 ~d~iad~lt~IrNA~~~~~~~v~i-P~Sk~~~~il~iL~~eGyI~~~~~-~~~~~~~i~v~Lky-~~~~~vI~~i~rISk 79 (129)
T 1s03_H 3 QDPIADMLTRIRNGQAANKAAVTM-PSSKLKVAIANVLKEEGFIEDFKV-EGDTKPELELTLKY-FQGKAVVESIQRVSR 79 (129)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHTTSEEEEEE-ECSSSCEEEEEECB-SSSSBSCSCEEECSB
T ss_pred cChHHHHHHHhHHHHHcCCCEEEE-eCcHHHHHHHHHHHHCCcceeEEE-cCCCceEEEEEEec-CCCCcccccceEEcC
Confidence 499999999999999999999998 999999999999999999999998 56667899999999 56788887
Q ss_pred c--ceeccccchhhhhcccCCCCcceEEEEECCCCcccHHHHHhcCCCeEEEEEEC
Q 033012 76 Y--RQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 129 (129)
Q Consensus 76 p--Rvy~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~eA~~~~vGGevL~~v~ 129 (129)
| |+|++.+|||+|.+ |+|++|||||+|||||+||+++++|||+||+||
T Consensus 80 Pg~R~y~~~~~l~kv~~------g~Gi~IlSTskGimt~~eAr~~~vGGevL~~v~ 129 (129)
T 1s03_H 80 PGLRIYKRKDELPKVMA------GLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA 129 (129)
T ss_dssp TTBCCEECGGGSCCSCS------SSCEEEEEETTEEEEHHHHHHHTCCEEEEEEEC
T ss_pred CCcceEcCHHHHHHHhC------CceEEEEECCcccccHHHHHHcCCCcEEEEEEC
Confidence 6 99999999999997 799999999999999999999999999999998
No 8
>3rf2_A 30S ribosomal protein S8; RNA-binding protein, hyperthermophilic bacterium, ribosome; 2.16A {Aquifex aeolicus}
Probab=100.00 E-value=4.4e-48 Score=287.24 Aligned_cols=122 Identities=25% Similarity=0.319 Sum_probs=112.3
Q ss_pred CCC-cHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCcccceEEEcCC------------------------
Q 033012 1 MGR-RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPH------------------------ 55 (129)
Q Consensus 1 M~~-d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~~~~~~~~~------------------------ 55 (129)
|++ |+|||||||||||++|+|+.|.+ |+||++.+|+++|++||||++|++.+++
T Consensus 1 m~~~d~iad~lt~IrNA~~ar~~~v~i-P~Skl~~~i~~iL~~eGyI~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 79 (168)
T 3rf2_A 1 MSAVDPIADMFSAIKNAIMRRDDFLYV-PSSKLKERILDVLKKEGFIQDWEALKGEKYEEEYKKMKELAEKSPNPKMKRY 79 (168)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSEEEE-ECCHHHHHHHHHHHHHTSEEEEEECCHHHHHHHHHHHHHHHHSSCCSSSHHH
T ss_pred CCcccHHHHHHHHHHHHHHcCCCEEEe-cccHHHHHHHHHHHHCCCccceEEecCCccccccccccccccCCCccccccc
Confidence 775 99999999999999999999998 9999999999999999999999987665
Q ss_pred ----------CcceEEEEEccccC--CCCccc-------c--ceeccccchhhhhcccCCCCcceEEEEECCCCcccHHH
Q 033012 56 ----------RVGKIKVELLGRVN--DCRGLT-------Y--RQDVKAREIEGYTVHALPTRQWGYVVITTPDGVLDHEE 114 (129)
Q Consensus 56 ----------~~~~i~I~Lky~~~--k~~~Is-------p--Rvy~~~~~l~~~~~~~~p~~~~Gi~IlSTskGimt~~e 114 (129)
.+++|||.|||+++ ++|+|+ | |+|++.+||++|.+ |+|++|||||+|||||+|
T Consensus 80 ~~~~t~~n~~~~~~l~v~LKY~~~~~k~pvI~~lkrISKPg~Riy~~~~eLprv~~------GlGi~IlSTskGImt~rE 153 (168)
T 3rf2_A 80 LKQLEEYNKGTQYPIKIYLKYLDPKKRKSAITNIVKVSKGGRRVYAGVRTMPYVKR------GLGIAIVSTDAGVMTDHE 153 (168)
T ss_dssp HHHHHHTTSTTCCEEEEEECBSSTTSCSBSCSCEEECSCSSSCCEECSTTCCCSGG------GTSEEEEEETTEEEEHHH
T ss_pred ccccccccccccceEEEEEEeecCCCCCccccccEEecCCCceEEcCHHHHHHHHc------CCcEEEEEcCCcceeHHH
Confidence 57899999999743 489884 8 99999999999998 799999999999999999
Q ss_pred HHhcCCCeEEEEEEC
Q 033012 115 ALRRNVGGQVLGYFH 129 (129)
Q Consensus 115 A~~~~vGGevL~~v~ 129 (129)
|+++++|||+||+||
T Consensus 154 Ar~~~vGGevLc~Vw 168 (168)
T 3rf2_A 154 ARRMRKGGEVIAFVW 168 (168)
T ss_dssp HHHTTCCEEEEEEEC
T ss_pred HHHhCCCCEEEEEEC
Confidence 999999999999999
No 9
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=54.95 E-value=3.8 Score=27.41 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=19.1
Q ss_pred HHHHHHHhhccCCcccceEEEcC
Q 033012 32 VMSSFLNIMKYRGYIKDFQLYDP 54 (129)
Q Consensus 32 ~~~~il~iL~~eG~I~~~~~~~~ 54 (129)
.-..+++.|.++|||.|+.+.+.
T Consensus 32 ~~~~il~~L~d~GyI~Gv~~~~~ 54 (102)
T 2hgc_A 32 QFDDAVNFLKREGYIIGVHYSDD 54 (102)
T ss_dssp HHHHHHHHHHHHTSEECCEESSS
T ss_pred HHHHHHHHHHHCCCccceEEEeC
Confidence 34578999999999999988654
No 10
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=50.26 E-value=44 Score=20.82 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=47.6
Q ss_pred HHHHHHHHhhhhhhcCCCeEEEecC----hhHHHHHHHhhccCCcccceEEEcC--CCcceEEEEEc
Q 033012 5 ILNDALRAIVNAERRGKATVELQPI----STVMSSFLNIMKYRGYIKDFQLYDP--HRVGKIKVELL 65 (129)
Q Consensus 5 ~iad~lt~IrNa~~a~~~~v~i~p~----Sk~~~~il~iL~~eG~I~~~~~~~~--~~~~~i~I~Lk 65 (129)
-...+-.-|..|..++.+.|.| -+ ..+...+-+.|.+...+..|...+. +..+-.+|.||
T Consensus 17 A~~~l~~fl~~a~~~g~~~v~I-IHGkG~GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~Gat~V~Lk 82 (83)
T 2zqe_A 17 ALLEVDQALEEARALGLSTLRL-LHGKGTGALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALR 82 (83)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEE-ECCSTTSHHHHHHHHHHHHCTTEEEEEECCTTTTGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEE-EECCCchHHHHHHHHHHhcCCceeEEEEcCcccCCCEEEEEEEe
Confidence 3455667788999999999998 44 3578899999999999999987654 34678888886
No 11
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=38.81 E-value=92 Score=21.29 Aligned_cols=63 Identities=14% Similarity=-0.037 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhhhhcCCCeEEEec----Ch-----hHHHHHHHhhccCCcccceEEEc--CCCcceEEEEEccc
Q 033012 5 ILNDALRAIVNAERRGKATVELQP----IS-----TVMSSFLNIMKYRGYIKDFQLYD--PHRVGKIKVELLGR 67 (129)
Q Consensus 5 ~iad~lt~IrNa~~a~~~~v~i~p----~S-----k~~~~il~iL~~eG~I~~~~~~~--~~~~~~i~I~Lky~ 67 (129)
...-+-.-|..|..++.+.|.|+. .| .+...+-+.|.++.++..|.... ++..+-.+|.||-.
T Consensus 60 A~~~L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~~~~GG~Gat~V~Lr~~ 133 (137)
T 3qd7_X 60 CRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKT 133 (137)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECCGGGTGGGEEEEEECC-
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecCccCCCCEEEEEEEEch
Confidence 345566778999999999999832 12 68899999999999999998754 34578899999854
No 12
>1a6s_A GAG polyprotein; core protein, virus structure, membrane binding, viral protein; NMR {Rous sarcoma virus - prague C} SCOP: a.61.1.4
Probab=35.26 E-value=20 Score=22.99 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=20.4
Q ss_pred cChhHHHHHHHhhccCCcccce
Q 033012 28 PISTVMSSFLNIMKYRGYIKDF 49 (129)
Q Consensus 28 p~Sk~~~~il~iL~~eG~I~~~ 49 (129)
|+.|-+-..|..|.+||.+.+=
T Consensus 21 pskKeI~a~LslL~kEg~l~sP 42 (87)
T 1a6s_A 21 PSKKEIGAMLSLLQKEGLLMSP 42 (87)
T ss_dssp SCSSHHHHHHHTGGGTTCTTCG
T ss_pred CcHHHHHHHHHHHHHccCcCCh
Confidence 8999999999999999999864
No 13
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=33.32 E-value=17 Score=24.87 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=37.5
Q ss_pred cHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCccc
Q 033012 4 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIK 47 (129)
Q Consensus 4 d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~ 47 (129)
.++-++|..-++....+...|.+ --|+++.+|.++|.+.+.+-
T Consensus 55 ~~Lk~vL~~Y~~ELk~~~tSvPf-ILSRMNldIS~vL~~n~I~L 97 (118)
T 2zrr_A 55 ESLRKVLGSYLKKLKNEGTSVPL-VLSRMNIEISNAIKKDGVSL 97 (118)
T ss_dssp HHHHHHHHHHHHHHHHCCSCHHH-HHHHHHHHHHHHHTTTTCCC
T ss_pred chHHHHHHHHHHHHhcCCCCchh-HHHHhhHHHHHHHHHCCccc
Confidence 57888888889998888888876 78999999999999998764
No 14
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=25.27 E-value=14 Score=24.46 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=35.8
Q ss_pred cHHHHHHHHhhhhhhcCCCeEEEecChhHHHHHHHhhccCCccc
Q 033012 4 RILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIK 47 (129)
Q Consensus 4 d~iad~lt~IrNa~~a~~~~v~i~p~Sk~~~~il~iL~~eG~I~ 47 (129)
.|+-++|..-++....+...|.+ --|+++.+|.++|.+.+.+-
T Consensus 35 ~~Lk~vL~~Y~~EL~~~~tSvP~-ILSRMNldiS~vl~~n~i~L 77 (98)
T 2k19_A 35 ESLKKVLENYLEELKQKSASVPL-ILSRMNLDISKAIRNDGVTL 77 (98)
T ss_dssp SSTHHHHHHHHHHHHSSSSCHHH-HHHHHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhcCCCcchH-HHHHhhHHHHHHHHHCCccc
Confidence 56777888888888887777876 68999999999999988764
No 15
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=20.86 E-value=42 Score=19.69 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=14.4
Q ss_pred hHHHHHHHhhccCCcccc
Q 033012 31 TVMSSFLNIMKYRGYIKD 48 (129)
Q Consensus 31 k~~~~il~iL~~eG~I~~ 48 (129)
....++++.|.++|||..
T Consensus 40 ~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 40 KTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCcEec
Confidence 456778889999999864
Done!