BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033016
         (129 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K6B|A Chain A, Solution Structure Of 1-112 Fragment Of Human Programmed
           Cell Death 5 Protein
          Length = 113

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 7/103 (6%)

Query: 2   ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARE 61
           AD ELEA+R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR 
Sbjct: 3   ADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARA 55

Query: 62  RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104
           RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+
Sbjct: 56  RLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 98


>pdb|2CRU|A Chain A, Solution Structure Of Programmed Cell Death 5
          Length = 118

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 62/97 (63%), Gaps = 7/97 (7%)

Query: 8   AIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIA 67
            +R++R+ EL A+ G       +    AQ++AK    E R  +L+Q+L   AR RL+ +A
Sbjct: 7   GLRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLA 59

Query: 68  LVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104
           LVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L+
Sbjct: 60  LVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 96


>pdb|2JXN|A Chain A, Solution Structure Of S. Cerevisiae Pdcd5-Like Protein
           Ymr074cp
          Length = 127

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 6/103 (5%)

Query: 3   DPELEAIRQRRMQELMAQQG-VGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARE 61
           DPEL+ IR+ R+ +L    G     +NS  +    E++           ++  L  +A E
Sbjct: 2   DPELQCIRECRLAQLKNNSGGTNGDRNSGANNGGGENSAPVG-----AAIANFLEPQALE 56

Query: 62  RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104
           RL+R+ALV+ ++A+ VE  + +      +  K++E  ++S+L 
Sbjct: 57  RLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILN 99


>pdb|1EIJ|A Chain A, Nmr Ensemble Of Methanobacterium Thermoautotrophicum
           Protein 1615
          Length = 80

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 43/60 (71%), Gaps = 1/60 (1%)

Query: 45  ERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104
           +++Q+M+ QIL+ EAR RLA + L +P+    +E  +++ AQMG++  K+++E+L  LL+
Sbjct: 8   QKKQIMM-QILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLK 66


>pdb|2FH0|A Chain A, Nmr Ensemble Of The Yeast Saccharomyces Cerevisiae Protein
           Ymr074cp Core Region
          Length = 81

 Score = 35.4 bits (80), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 33/54 (61%)

Query: 51  LSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104
           ++  L  +A ERL+R+ALV+ ++A+ VE  + +      +  K++E  ++S+L 
Sbjct: 11  IANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILN 64


>pdb|1YYB|A Chain A, Solution Structure Of 1-26 Fragment Of Human Programmed
          Cell Death 5 Protein
          Length = 27

 Score = 25.8 bits (55), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 17/21 (80%)

Query: 2  ADPELEAIRQRRMQELMAQQG 22
          AD ELEA+R++R+ EL A+ G
Sbjct: 3  ADEELEALRRQRLAELQAKHG 23


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.127    0.315 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,390,403
Number of Sequences: 62578
Number of extensions: 64863
Number of successful extensions: 193
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 15
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)