BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033016
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56812|PDCD5_MOUSE Programmed cell death protein 5 OS=Mus musculus GN=Pdcd5 PE=1 SV=3
Length = 126
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 85/129 (65%), Gaps = 7/129 (5%)
Query: 1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
MAD ELEA+R++R+ EL A+ G + AQ++AK+ E R +L+Q+L AR
Sbjct: 1 MADEELEALRKQRLAELQAKHG-------DPGDAAQQEAKQREAEMRNSILAQVLDQSAR 53
Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
RL+ +ALVKPEK + VE+ +++ A+ GQ+ KVSE+ LI +LE+++ QT K+T V R
Sbjct: 54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNR 113
Query: 121 RRSVLEDDD 129
R+ + D+D
Sbjct: 114 RKVMDSDED 122
>sp|Q5RBT0|PDCD5_PONAB Programmed cell death protein 5 OS=Pongo abelii GN=PDCD5 PE=2 SV=3
Length = 125
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 84/129 (65%), Gaps = 7/129 (5%)
Query: 1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
MAD ELEA+R++R+ EL A+ G + AQ++AK E R +L+Q+L AR
Sbjct: 1 MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53
Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V R
Sbjct: 54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNR 113
Query: 121 RRSVLEDDD 129
R+ + D+D
Sbjct: 114 RKVMDSDED 122
>sp|O14737|PDCD5_HUMAN Programmed cell death protein 5 OS=Homo sapiens GN=PDCD5 PE=1 SV=3
Length = 125
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 84/129 (65%), Gaps = 7/129 (5%)
Query: 1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
MAD ELEA+R++R+ EL A+ G + AQ++AK E R +L+Q+L AR
Sbjct: 1 MADEELEALRRQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53
Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V R
Sbjct: 54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNR 113
Query: 121 RRSVLEDDD 129
R+ + D+D
Sbjct: 114 RKVMDSDED 122
>sp|Q2HJH9|PDCD5_BOVIN Programmed cell death protein 5 OS=Bos taurus GN=PDCD5 PE=2 SV=3
Length = 125
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 84/129 (65%), Gaps = 7/129 (5%)
Query: 1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
MA+ ELEA+R++R+ EL A+ G + AQ++AK E R +L+Q+L AR
Sbjct: 1 MAEQELEALRKQRLAELQAKHG-------DPGDAAQQEAKHREAEMRNSILAQVLDQSAR 53
Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
RL+ +ALVKPEK + VE+ +++ A+ GQ+ KVSE+ LI +LE+++ QT K+T V R
Sbjct: 54 ARLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNR 113
Query: 121 RRSVLEDDD 129
R+ + D+D
Sbjct: 114 RKVMDSDED 122
>sp|O13929|YF69_SCHPO Uncharacterized protein C23C4.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC23C4.09c PE=3 SV=1
Length = 131
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 84/133 (63%), Gaps = 13/133 (9%)
Query: 3 DPELEAIRQRRMQELMAQQG-----VGSQQNSEQHQKAQEDAKREADERRQMMLSQILST 57
D EL+AIRQ R+ +L A+ G + S +S Q Q+ +D E RQ +LSQIL
Sbjct: 2 DEELQAIRQARLAQLQAEHGSAPSNIASGPSSNQQQQEVQD------EMRQNLLSQILEH 55
Query: 58 EARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTK--QTK 115
AR+RL RIALV+ ++A VE+++LR A+ GQI K+SE LI LLE+I+ + +K +TK
Sbjct: 56 PARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETK 115
Query: 116 VTIQRRRSVLEDD 128
+ I RR EDD
Sbjct: 116 IVINRRVQDDEDD 128
>sp|Q54YS0|Y8111_DICDI DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum
GN=DDB_G0278111 PE=3 SV=2
Length = 117
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 66/86 (76%), Gaps = 3/86 (3%)
Query: 44 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 103
+ERRQ +L QIL+ +ARERL+RI +VKPEK+R +ED+I+R+AQ GQ+ E+V + +LISLL
Sbjct: 35 NERRQGILIQILTPDARERLSRITIVKPEKSRQIEDLIIRAAQTGQLTERVDDAKLISLL 94
Query: 104 EQINTQTTKQTKVTIQRRRSVLEDDD 129
EQ++ +T K T +R +EDDD
Sbjct: 95 EQLSEKTKKTTITMKRR---TIEDDD 117
>sp|Q8TUY2|Y1619_METKA DNA-binding protein MK1619 OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=MK1619 PE=3 SV=1
Length = 117
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 81/121 (66%), Gaps = 4/121 (3%)
Query: 1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
M DPELE IR++++ EL Q+ + Q + ++ ++ A EA R+ ML +IL+ EAR
Sbjct: 1 MTDPELERIRRKKIMEL--QRKLEESQEKKVEEEREKKALEEAQ--RRAMLRRILTPEAR 56
Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
ERLAR+ L +P+ A+ VE+ +L+ AQ GQ+ EK+ E++L +L+Q++ T K+ ++ +R
Sbjct: 57 ERLARVRLARPQLAQAVENYLLQLAQTGQLKEKIDEDQLKRILKQVSDATRKEYRIRFKR 116
Query: 121 R 121
+
Sbjct: 117 K 117
>sp|Q8U1W7|Y1087_PYRFU DNA-binding protein PF1087 OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1087 PE=3 SV=1
Length = 112
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 75/115 (65%), Gaps = 11/115 (9%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKRE---ADERRQMMLSQILSTEARE 61
++E IR+R++ EL Q+ + QKAQE+A+R+ + + Q +L +IL+ EARE
Sbjct: 4 DIEEIRRRKLMEL--------QKKYLEQQKAQEEAERQQALIEAQIQAILRRILTPEARE 55
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
RLAR+ LVKPE AR VE I+++ Q GQI EK+ + ++ +L QI +T ++ ++
Sbjct: 56 RLARVKLVKPELARQVELILVQLYQAGQITEKIDDAKMKKILAQIEARTRREFRI 110
>sp|Q93408|YRGK_CAEEL Uncharacterized protein D2005.3 OS=Caenorhabditis elegans
GN=D2005.3 PE=3 SV=2
Length = 130
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 18 MAQQGVGS--QQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKAR 75
M QG S Q + + H+KA++ A+ + + + M+SQIL A +RL+ +A+ KPEKA+
Sbjct: 14 MEAQGASSIPQPSQDAHEKARQQAENQ-ETAKNGMISQILDQAAMQRLSNLAVAKPEKAQ 72
Query: 76 GVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRRSVLEDDD 129
VE ++ A+ GQ+ K++++ L +L+E+++ QT K T V RRR+ L+ D+
Sbjct: 73 MVEAALINMARRGQLSGKMTDDGLKALMERVSAQTQKATSVKFDRRRNELDSDE 126
>sp|O58787|Y1060_PYRHO DNA-binding protein PH1060 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1060 PE=3 SV=1
Length = 115
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 75/115 (65%), Gaps = 11/115 (9%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKRE---ADERRQMMLSQILSTEARE 61
++E IR+R++ EL Q+ + QKAQE+A+R+ + + Q +L +IL+ EARE
Sbjct: 7 DIEEIRRRKLMEL--------QRKYLEQQKAQEEAERQQALIEAQIQAILRKILTPEARE 58
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
RLAR+ LV+PE AR VE I+++ Q GQI E++ + +L +L QI +T ++ ++
Sbjct: 59 RLARVKLVRPELARQVELILVQLYQAGQITERIDDAKLKRILAQIEAKTRREFRI 113
>sp|Q5JGN3|Y1278_PYRKO DNA-binding protein TK1278 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=TK1278 PE=3 SV=1
Length = 112
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 74/115 (64%), Gaps = 11/115 (9%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDA-KREADERRQM--MLSQILSTEARE 61
++E IR+R++ EL Q+ + QKAQE+A KRE + Q+ ++ +IL+ EARE
Sbjct: 4 DIEEIRKRKLMEL--------QKKYLEQQKAQEEALKREMELEAQLEAIMRKILTPEARE 55
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
RL R+ LVKPE AR VE ++++ Q GQI E++ + +L +L +I+ +T + K+
Sbjct: 56 RLGRVKLVKPELARQVELLLVQLYQAGQIRERIDDAKLKRILAEIDARTRRDFKI 110
>sp|C5A636|Y1196_THEGJ DNA-binding protein TGAM_1196 OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1196 PE=3 SV=1
Length = 112
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 75/115 (65%), Gaps = 11/115 (9%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDA-KREADERRQM--MLSQILSTEARE 61
++E IR+R++ EL Q+ + QKAQE+A KRE + + Q+ ++ +IL+ +ARE
Sbjct: 4 DIEEIRKRKLMEL--------QKRYLEQQKAQEEAIKREMELQAQIDAIMRKILTPDARE 55
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
RL R+ LVKPE AR VE ++++ Q GQI E + + +L +L QI+ +T ++ ++
Sbjct: 56 RLGRVKLVKPELARQVELVLVQLYQAGQIREPIDDAKLKKILAQIDARTRREFRI 110
>sp|C6A1U6|Y525_THESM DNA-binding protein TSIB_0525 OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=TSIB_0525 PE=3 SV=1
Length = 112
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 52/69 (75%)
Query: 48 QMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQIN 107
Q ++ QIL++EARERL R+ LV+PE AR VE I+++ Q GQI E++++E+L +L QI+
Sbjct: 42 QAIMKQILTSEARERLTRVKLVRPELARQVELILVQLYQAGQITERITDEKLKRILAQID 101
Query: 108 TQTTKQTKV 116
+T K+ ++
Sbjct: 102 ARTRKEFRI 110
>sp|P56813|Y925_PYRAB DNA-binding protein PYRAB09250 OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB09250 PE=3 SV=1
Length = 115
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 73/115 (63%), Gaps = 11/115 (9%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKRE---ADERRQMMLSQILSTEARE 61
++E IR+R++ EL Q+ + QKAQE+ R+ + + Q +L +IL+ EARE
Sbjct: 7 DIEEIRRRKLLEL--------QRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARE 58
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
RLAR+ LV+PE AR VE I+++ Q GQI E++ + +L +L QI +T ++ ++
Sbjct: 59 RLARVRLVRPELARQVELILVQLYQAGQITERIDDAKLKKILAQIEARTRREFRI 113
>sp|Q971I0|Y1374_SULTO DNA-binding protein STK_13740 OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_13740 PE=3
SV=2
Length = 115
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 8/110 (7%)
Query: 14 MQELMAQQGVGSQQNS--EQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKP 71
+ EL+ ++ + Q+ + EQ +KA+ +AK++A +L IL+ EAR+RLA + LVKP
Sbjct: 9 LDELLRRKALEQQRKALEEQQRKAELEAKKDA------ILRVILTPEARQRLANVKLVKP 62
Query: 72 EKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
E A +E+ ++ AQ G+I +++E L +L Q+ QT K K+TI+ R
Sbjct: 63 ELAEAIENQLIALAQSGRIQAPITDEELKEILAQLTNQTRKDYKITIRER 112
>sp|Q6L2L3|Y204_PICTO DNA-binding protein PTO0204 OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=PTO0204
PE=3 SV=1
Length = 113
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 72/114 (63%), Gaps = 7/114 (6%)
Query: 3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARER 62
D EL+ IR+R+M E Q + ++ E+ QK A E + RRQ +L QILS EARER
Sbjct: 4 DDELDEIRRRKMAEY---QNMMQERAYEEEQKK---AAAEEEARRQQILRQILSPEARER 57
Query: 63 LARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
L+R+ LV+P+ VE+ +++ A MG+I + +S+ L S+L ++ T+ +T++
Sbjct: 58 LSRLKLVRPDLVENVENQLIQLAGMGRINKVISDNELKSILLRL-TENRHETRI 110
>sp|B6YWX7|Y1102_THEON DNA-binding protein TON_1102 OS=Thermococcus onnurineus (strain
NA1) GN=TON_1102 PE=3 SV=1
Length = 112
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 11/115 (9%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKR---EADERRQMMLSQILSTEARE 61
++E IR++++ EL Q+ + QKAQE+A R E + + ++ IL+ EARE
Sbjct: 4 DIEEIRKKKLLEL--------QKRYLEQQKAQEEAIRQEMELEAQLNAIMRHILTPEARE 55
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
RL R+ LV+PE AR VE ++++ Q GQI E + + +L +L QI+ +T + ++
Sbjct: 56 RLGRVKLVRPELARQVELVLVQLYQAGQIREPIDDAKLKKILAQIDARTRRDFRI 110
>sp|Q4J8U0|Y1468_SULAC DNA-binding protein Saci_1468 OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_1468 PE=3 SV=1
Length = 96
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 61/92 (66%), Gaps = 6/92 (6%)
Query: 30 EQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQ 89
E+ +KA+ +A+++A +L IL+ EAR+RL + LV+PE A +E+ ++ AQ G+
Sbjct: 8 ERQRKAEIEAQKDA------ILRTILTPEARQRLTNVKLVRPELAEAIENQLIALAQSGR 61
Query: 90 IVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
I +++++ L +L Q+N+QT K K+TI+ R
Sbjct: 62 IQAQITDDELKQILAQLNSQTRKDYKITIKER 93
>sp|Q58103|Y691_METJA DNA-binding protein MJ0691 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0691 PE=3 SV=1
Length = 109
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 29 SEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMG 88
+EQ Q QE+A EA+ +++ +L +IL+ EARERL RI L +PE A VE +++ AQ+G
Sbjct: 19 AEQQQ--QEEALLEAEMQKRALLRKILTPEARERLERIRLARPEFAEAVEVQLIQLAQLG 76
Query: 89 QIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
++ +S+E +LLE+I+ T ++ ++ I R+
Sbjct: 77 RLPIPLSDEDFKALLERISALTKRKREIKIVRK 109
>sp|A6URD8|Y1162_METVS DNA-binding protein Mevan_1162 OS=Methanococcus vannielii (strain
SB / ATCC 35089 / DSM 1224) GN=Mevan_1162 PE=3 SV=1
Length = 113
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 47 RQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQI 106
+Q +L QILS EAR RLARI L KPE AR VE +++ AQ G++ +++E LL++I
Sbjct: 38 KQKVLRQILSEEARSRLARIKLAKPEFARQVESQLIQLAQAGRLPVPLTDEYFKGLLDKI 97
Query: 107 NTQTTKQTK--VTIQRR 121
+ K TK VTI RR
Sbjct: 98 -YEMNKSTKREVTITRR 113
>sp|Q6M0W1|Y157_METMP DNA-binding protein MMP0157 OS=Methanococcus maripaludis (strain S2
/ LL) GN=MMP0157 PE=3 SV=1
Length = 119
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 7 EAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARI 66
E IRQRR+QE+ A+ N + Q+ ++ + + + ++Q +L QILS EAR RLARI
Sbjct: 4 EEIRQRRLQEMQAKAQAQGAANDPEAQRQMQEQQMQYEMQKQKILRQILSEEARSRLARI 63
Query: 67 ALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTK-VTIQRR 121
L KP+ A VE +++ AQ G++ +++E LL++I K +TI R+
Sbjct: 64 KLAKPQFAEQVEMQLIQLAQAGKLPVPLTDEYFKGLLDKIYEMNRPAKKEITIMRK 119
>sp|A6VIE7|Y1157_METM7 DNA-binding protein MmarC7_1157 OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=MmarC7_1157 PE=3 SV=1
Length = 119
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 1/116 (0%)
Query: 7 EAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARI 66
E IRQRR+QE+ A+ N + Q+ ++ + + + ++Q +L QILS +AR RLARI
Sbjct: 4 EEIRQRRLQEMQAKAQEQGAANDPEAQRQAQEQQMQYEMQKQKILRQILSEDARSRLARI 63
Query: 67 ALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTK-VTIQRR 121
L KP+ A VE +++ AQ G++ +++E LL++I K +TI RR
Sbjct: 64 KLAKPQFAEQVEMQLIQLAQAGKLPIPLTDEYFKGLLDRIYEMNKPAKKEITIMRR 119
>sp|Q9HM19|Y052_THEAC DNA-binding protein Ta0052 OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=Ta0052 PE=3 SV=2
Length = 115
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 68/114 (59%), Gaps = 7/114 (6%)
Query: 3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARER 62
D ELE IR+ Q+L + Q Q+ + Q+ Q +A+R RRQ +L QIL ARER
Sbjct: 4 DEELERIRR---QQLESMQRQAMQEQMREEQEKQREAERA---RRQQILRQILDPSARER 57
Query: 63 LARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
L + LV+P+ A VE+ +++ A MG+I +SE +I +L ++ T+ ++ K+
Sbjct: 58 LNNVRLVRPDLADNVENQLIQLASMGRINRMLSERDIIDILSKL-TENKREPKI 110
>sp|A6UVQ4|Y998_META3 DNA-binding protein Maeo_0998 OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=Maeo_0998 PE=3 SV=1
Length = 119
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLA 64
++E I++++M EL QQ G+ N E+ Q+ QE + + +++ ++ +ILS EAR RL+
Sbjct: 2 DIEEIKRQKMMELQQQQAQGAP-NPEEIQQQQEQERAAYEAQKKQIMKKILSEEARHRLS 60
Query: 65 RIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRR 122
I +VKPE A VE +++ AQ G++ VS+E +LL+Q+ T + + K I+ R
Sbjct: 61 NIKMVKPEFAEQVEMQLIQLAQSGRLPIPVSDEYFKTLLDQLYTMGSAKKKRDIKFVR 118
>sp|Q12ZJ1|Y117_METBU DNA-binding protein Mbur_0117 OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_0117 PE=3 SV=1
Length = 114
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLA 64
+LEAIRQ+R+ EL QQ S QN Q QE A+ E DE+ + +L Q+++ EARERL
Sbjct: 3 DLEAIRQKRLAELQQQQS--SPQNDAQAAYQQEQAQAERDEQVKAVLRQVMTPEARERLT 60
Query: 65 RIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVT 117
R+ L + E +E ++ AQ G++ K+ +E+L LL Q+ Q +QT +T
Sbjct: 61 RLRLSRKELVEQLESQLVMLAQNGRLQTKIDDEKLKVLLTQMQPQ-KRQTSIT 112
>sp|C3MR75|Y1892_SULIL DNA-binding protein LS215_1892 OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=LS215_1892 PE=3 SV=1
Length = 118
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 14 MQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEK 73
++EL+ ++ Q+ E+ +K K E + +++ +L IL+ EAR+RL I LVKPE
Sbjct: 12 LEELLRRKAAQEQKRLEEERKR----KAELESQKESILRVILTPEARQRLTNIKLVKPEF 67
Query: 74 ARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
A +E+ ++ AQ G+I +++E L +LEQI+ Q + K+ I+ R
Sbjct: 68 AESLENQLIALAQSGRIKVPITDEELKQILEQISEQNRRDFKIQIRER 115
>sp|C3N7D0|Y1868_SULIY DNA-binding protein YG5714_1868 OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=YG5714_1868 PE=3 SV=1
Length = 118
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 14 MQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEK 73
++EL+ ++ Q+ E+ +K K E + +++ +L IL+ EAR+RL I LVKPE
Sbjct: 12 LEELLRRKAAQEQKRLEEERKR----KAELESQKESILRVILTPEARQRLTNIKLVKPEF 67
Query: 74 ARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
A +E+ ++ AQ G+I +++E L +LEQI+ Q + K+ I+ R
Sbjct: 68 AESLENQLIALAQSGRIKVPITDEELKQILEQISEQNRRDFKIQIRER 115
>sp|C3NGA4|Y1057_SULIN DNA-binding protein YN1551_1057 OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=YN1551_1057 PE=3 SV=1
Length = 118
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 14 MQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEK 73
++EL+ ++ Q+ E+ +K K E + +++ +L IL+ EAR+RL I LVKPE
Sbjct: 12 LEELLRRKAAQEQKRLEEERKR----KAELESQKESILRVILTPEARQRLTNIKLVKPEF 67
Query: 74 ARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
A +E+ ++ AQ G+I +++E L +LEQI+ Q + K+ I+ R
Sbjct: 68 AESLENQLIALAQSGRIKVPITDEELKQILEQISEQNRRDFKIQIRER 115
>sp|Q980F8|Y352_SULSO DNA-binding protein SSO0352 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO0352 PE=3 SV=1
Length = 118
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 14 MQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEK 73
++EL+ ++ Q+ E+ +K K E + +++ +L IL+ EAR+RL I LVKPE
Sbjct: 12 LEELLRRKAAQEQKRIEEERKR----KAELESQKESILRVILTPEARQRLTNIKLVKPEF 67
Query: 74 ARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
A +E+ ++ AQ G+I +++E L +LEQI+ Q + K+ I+ R
Sbjct: 68 AESLENQLIALAQSGRIKIPITDEELKQILEQISQQNRRDFKIQIRER 115
>sp|C3MZB0|Y1870_SULIA DNA-binding protein M1627_1870 OS=Sulfolobus islandicus (strain
M.16.27) GN=M1627_1870 PE=3 SV=1
Length = 118
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 14 MQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEK 73
++EL+ ++ Q+ E+ +K K E + +++ +L IL+ EAR+RL I LVKPE
Sbjct: 12 LEELLRRKAAQEQKRLEEERKR----KAELESQKESILRVILTPEARQRLTNIKLVKPEF 67
Query: 74 ARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
A +E+ ++ AQ G+I +++E L +LEQI+ Q + K+ I+ R
Sbjct: 68 AESLENQLIALAQSGRIKVPLTDEELKQILEQISEQNRRDFKIQIRER 115
>sp|C4KII8|Y1799_SULIK DNA-binding protein M164_1799 OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=M164_1799 PE=3 SV=1
Length = 118
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 14 MQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEK 73
++EL+ ++ Q+ E+ +K K E + +++ +L IL+ EAR+RL I LVKPE
Sbjct: 12 LEELLRRKAAQEQKRLEEERKR----KAELESQKESILRVILTPEARQRLTNIKLVKPEF 67
Query: 74 ARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
A +E+ ++ AQ G+I +++E L +LEQI+ Q + K+ I+ R
Sbjct: 68 AESLENQLIALAQSGRIKVPLTDEELKQILEQISEQNRRDFKIQIRER 115
>sp|C3MXG4|Y1752_SULIM DNA-binding protein M1425_1752 OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=M1425_1752 PE=3 SV=1
Length = 118
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 14 MQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEK 73
++EL+ ++ Q+ E+ +K K E + +++ +L IL+ EAR+RL I LVKPE
Sbjct: 12 LEELLRRKAAQEQKRLEEERKR----KAELESQKESILRVILTPEARQRLTNIKLVKPEF 67
Query: 74 ARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
A +E+ ++ AQ G+I +++E L +LEQI+ Q + K+ I+ R
Sbjct: 68 AESLENQLIALAQSGRIKVPLTDEELKQILEQISEQNRRDFKIQIRER 115
>sp|A9A8D7|Y793_METM6 DNA-binding protein MmarC6_0793 OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=MmarC6_0793 PE=3 SV=1
Length = 118
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 71/117 (60%), Gaps = 4/117 (3%)
Query: 7 EAIRQRRMQELMAQ-QGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLAR 65
E IRQRR+QE+ A+ Q G+Q + Q+ ++ + + + ++Q +L QILS EAR RLAR
Sbjct: 4 EEIRQRRLQEMQAKAQEQGAQ--DPEAQRQMQEQQMQYEMQKQKILRQILSEEARSRLAR 61
Query: 66 IALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTK-VTIQRR 121
I L KP+ A VE +++ AQ G++ +++E LL++I K +TI RR
Sbjct: 62 IKLAKPQFAEQVEMQLIQLAQAGKLPIPLTDEYFKGLLDRIYEMNKPAKKEITIMRR 118
>sp|B8GEU2|Y536_METPE DNA-binding protein Mpal_0536 OS=Methanosphaerula palustris (strain
ATCC BAA-1556 / DSM 19958 / E1-9c) GN=Mpal_0536 PE=3
SV=1
Length = 109
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 9/106 (8%)
Query: 1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
M D EL +R+RRM Q+ + Q+ ++ K+ A QM L QIL EAR
Sbjct: 1 MGDDELAELRRRRM---------AQLQSQQMDQQQMDEEKQRAKSAMQMALMQILEPEAR 51
Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQI 106
ERL I L KPE A GVE ++ AQ G+I +K+S+ +L LL Q+
Sbjct: 52 ERLNTIRLTKPEFAAGVEQQLVMLAQSGRIKQKISDAQLKDLLRQL 97
>sp|Q04773|YMW4_YEAST Uncharacterized protein YMR074C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YMR074C PE=1 SV=1
Length = 145
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 3 DPELEAIRQRRMQELMAQQG-VGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARE 61
DPEL+AIR+ R+ +L G +NS + E++ ++ L +A E
Sbjct: 2 DPELQAIREARLAQLKNNSGGTNGDRNSGANNGGGENSAPVG-----AAIANFLEPQALE 56
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQ--TKVTIQ 119
RL+R+ALV+ ++A+ VE + + + K++E ++S+L I Q Q +K+ +
Sbjct: 57 RLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIFE 116
Query: 120 RR 121
R+
Sbjct: 117 RK 118
>sp|Q97CU3|Y008_THEVO DNA-binding protein TV0008 OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0008 PE=3 SV=1
Length = 115
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 15/118 (12%)
Query: 3 DPELEAIRQRRMQEL----MAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTE 58
D ELE IR+R+M+EL M +Q ++ + +KA RRQ +L QIL
Sbjct: 4 DEELEKIRRRQMEELQRQAMQRQMAEEEEKQREIEKA----------RRQQILRQILDPS 53
Query: 59 ARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKV 116
ARERL + LV+P+ A VE+ +++ A MG+I + E +I +L ++ T+ ++ K+
Sbjct: 54 ARERLNNVRLVRPDLADNVENQLIQLASMGRINRIIKESDIIDILSKL-TENKREPKI 110
>sp|Q18DQ4|Y1105_HALWD DNA-binding protein HQ_1105A OS=Haloquadratum walsbyi (strain DSM
16790) GN=HQ_1105A PE=3 SV=1
Length = 120
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 64/102 (62%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLA 64
+L+ +RQ+RM+EL Q Q S+ AQE A+ +A+ +++ +L Q L+ AR+RL
Sbjct: 7 DLDELRQQRMEELRDQADGQQSQTSDNTAAAQEAAREKAEAQQEALLKQHLTDGARQRLN 66
Query: 65 RIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQI 106
I + KP+ A V+ ++ AQ G+I +++ E+++ LL+++
Sbjct: 67 AIEMSKPDFAEKVKKQLVTLAQSGRIQDRIDEDQMRELLQEL 108
>sp|A5UL35|Y708_METS3 DNA-binding protein Msm_0708 OS=Methanobrevibacter smithii (strain
PS / ATCC 35061 / DSM 861) GN=Msm_0708 PE=3 SV=1
Length = 118
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 44 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 103
+E+++ +++QIL+TEAR RLA + L KPE +E +++SAQ G + KV++E+L LL
Sbjct: 44 EEQKKALIAQILTTEARSRLANLKLTKPELVNQIEIQLIQSAQAGSLRGKVTDEQLKVLL 103
Query: 104 EQINTQTTKQTKVT 117
QI Q ++ K+T
Sbjct: 104 RQIAGQ-KREIKIT 116
>sp|Q0W5G9|Y1824_UNCMA DNA-binding protein UNCMA_18240 OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_18240 PE=3 SV=1
Length = 111
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 67/106 (63%), Gaps = 9/106 (8%)
Query: 1 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEAR 60
M+ EL+ IR+R+++EL Q ++Q A+ +++ ++++ M+L QIL+ EAR
Sbjct: 3 MSGDELDEIRRRKLEEL---------QRAQQDDIARAQQRQQVEQQKAMILRQILTPEAR 53
Query: 61 ERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQI 106
ERL I + +P+ VE ++ AQ G++ +++ +++L+ +LEQI
Sbjct: 54 ERLNTIRMTRPDFVENVEAQLIGLAQTGRLAKQIDDQQLVRILEQI 99
>sp|Q2FTJ7|Y3016_METHJ DNA-binding protein Mhun_3016 OS=Methanospirillum hungatei (strain
JF-1 / DSM 864) GN=Mhun_3016 PE=3 SV=1
Length = 110
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 48 QMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQIN 107
QM L QIL EARERL I L KP+ AR VE ++ AQ G+I K+S+++L +L+Q+
Sbjct: 39 QMALMQILEPEARERLNTIKLTKPDFARAVEQQLVMLAQSGRIKNKISDDQLKVILQQV- 97
Query: 108 TQTTKQTKVTIQRR 121
T + + I+R+
Sbjct: 98 --TPAKREFNIRRK 109
>sp|A4G031|Y1518_METM5 DNA-binding protein MmarC5_1518 OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=MmarC5_1518 PE=3 SV=1
Length = 118
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 7 EAIRQRRMQELMAQQGVGSQQNSE--QHQKAQEDAKREADERRQMMLSQILSTEARERLA 64
E IRQRR+QE+ A+ +Q +E + Q+ ++ + + + ++Q +L QILS +AR RLA
Sbjct: 4 EEIRQRRLQEMQAK---AQEQGAEDPEAQRQAQEQQMQYEMQKQKILRQILSEDARSRLA 60
Query: 65 RIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTK-VTIQRR 121
RI L KP+ A VE +++ AQ G++ +++E LL++I K +TI R+
Sbjct: 61 RIKLAKPQFAEHVEMQLIQLAQAGKLPVPLTDEYFKGLLDRIYEMNRPAKKEITIMRK 118
>sp|Q8PYQ7|Y803_METMA DNA-binding protein MM_0803 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0803 PE=3 SV=1
Length = 120
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 3 DPELEAIRQRRMQELMAQQGVGSQQNSE-QHQKAQEDAKREADERRQMMLSQILSTEARE 61
D ELE IR+RR+ E+ QQ QQ S+ Q QE A+ E + ++Q +L QIL+ EARE
Sbjct: 7 DDELEEIRKRRLAEIQRQQA---QQPSDMQAAYQQEQARAEMEAQKQSILRQILTPEARE 63
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 103
RL + + +P +E ++ AQ G++ ++ +E+L +LL
Sbjct: 64 RLTTLKMSRPALGEQLELQLISLAQSGRLQSQIDDEQLKTLL 105
>sp|Q05E29|Y1087_AERPE DNA-binding protein APE_1087b OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1087b PE=3 SV=1
Length = 115
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 11/120 (9%)
Query: 3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQK-AQEDAKREADERRQMMLSQILSTEARE 61
D ELE IR+R+M EL + ++ EQ + AQ+DA +L ++L+++ARE
Sbjct: 6 DDELEEIRRRKMLELQRRLEEERRREEEQARLRAQKDA----------ILRRLLTSKARE 55
Query: 62 RLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121
RLA + LV+PE A E+ +++ Q G+I V ++ L+ +L +++ T + ++ I+R+
Sbjct: 56 RLANLRLVRPEIAEAAENAVIQLVQTGRITPPVDDDTLVQILLELDRSTRRDFEIRIKRK 115
>sp|O27652|DNBP_METTH DNA-binding protein MTH_1615 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1615 PE=1 SV=1
Length = 111
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 65/102 (63%), Gaps = 5/102 (4%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLA 64
+LE IR+++M EL Q QQ E AQE +++ + +++ ++ QIL+ EAR RLA
Sbjct: 3 DLEEIRRKKMLEL---QQKAQQQAMEAE--AQEQMRQQLEMQKKQIMMQILTPEARSRLA 57
Query: 65 RIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQI 106
+ L +P+ +E +++ AQMG++ K+++E+L LL+++
Sbjct: 58 NLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRV 99
>sp|Q46FA5|Y455_METBF DNA-binding protein Mbar_A0455 OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A0455 PE=3 SV=1
Length = 122
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARER 62
D EL IR+RR+ E+ QQ Q + Q QE AK E + ++Q +L QIL+ EARER
Sbjct: 8 DDELNEIRKRRLAEIQRQQAQNQQSDI-QAAYQQEQAKAEMEAQKQAILRQILTPEARER 66
Query: 63 LARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
L + + +P +E ++ AQ G++ ++S+E+L +LL ++ K+ K +I R
Sbjct: 67 LTTLKMSRPAIGEQLEMQLISLAQSGRLPSQISDEQLKTLLMKMQ---PKKRKTSITR 121
>sp|O28211|Y2068_ARCFU DNA-binding protein AF_2068 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_2068 PE=3 SV=1
Length = 111
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 65/105 (61%), Gaps = 8/105 (7%)
Query: 5 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLA 64
+LE IR+R++ EL Q+ E + +E+ +R+ + +++ +L IL EA+ERL+
Sbjct: 6 DLEEIRRRKLMEL--------QRQKELEELQKEEMRRQVEAQKKAILRAILEPEAKERLS 57
Query: 65 RIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQ 109
R+ L PE A VE+ ++ AQ G+I K++++ L+ +L+++ +
Sbjct: 58 RLKLAHPEIAEAVENQLIYLAQAGRIQSKITDKMLVEILKRVQPK 102
>sp|A3CWZ8|Y1972_METMJ DNA-binding protein Memar_1972 OS=Methanoculleus marisnigri (strain
ATCC 35101 / DSM 1498 / JR1) GN=Memar_1972 PE=3 SV=1
Length = 112
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 51 LSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQT 110
L +IL EARERL I L +PE A+ VE ++ AQ G++ +++++E+L +LL Q+ T +
Sbjct: 45 LMEILEPEARERLNTIKLTRPEFAKAVEQQLVMLAQSGRVRQRITDEQLKALLAQL-TPS 103
Query: 111 TKQTKVT 117
K+ ++T
Sbjct: 104 KKEFRIT 110
>sp|Q3INK4|Y4416_NATPD DNA-binding protein NP_4416A OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_4416A PE=3 SV=1
Length = 115
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARER 62
D +LE +R+++M++L Q G G + +E Q+ Q +A+++A +L + L+ AR+R
Sbjct: 7 DEDLEELRKKKMEQLKEQGGEGQSEAAE-AQRQQAEAQKKA------ILRKTLTDGARKR 59
Query: 63 LARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQT 110
L + + KP+ VE I+ AQ G+I K+ EE++ LL+++ +
Sbjct: 60 LNTVQMSKPQFGEKVEQQIVALAQSGRIQGKIDEEKMKELLQEMKPDS 107
>sp|A4WLS5|Y1791_PYRAR DNA-binding protein Pars_1791 OS=Pyrobaculum arsenaticum (strain
DSM 13514 / JCM 11321) GN=Pars_1791 PE=3 SV=1
Length = 110
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 64/116 (55%), Gaps = 13/116 (11%)
Query: 3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARER 62
D ELE +R+++++EL Q+ +E ++AQ A + R+M L +IL+ EA R
Sbjct: 8 DRELEELRRKKLEEL--------QKKAELERQAQIAAAQ-----RRMALKRILTPEALAR 54
Query: 63 LARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTI 118
L I +V+PE A +E I+ A G++ + + L +LE + +QT K+ K +
Sbjct: 55 LDNIRIVRPELAEALEQQIIALASSGRVKVPIDDNTLKKILEAVYSQTRKEYKFRL 110
>sp|Q8TIN0|Y4116_METAC DNA-binding protein MA_4116 OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_4116 PE=3
SV=1
Length = 122
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARER 62
D ELE IR+RR+ E+ QQ + Q QE A+ E + ++Q +L QIL+ EARER
Sbjct: 8 DDELEEIRKRRLAEIQRQQAQQQPSDV-QAAYQQEQARAEMEAQKQAILRQILTPEARER 66
Query: 63 LARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120
L + + +P +E ++ AQ G++ ++ +E+L +LL ++ K+ K +I R
Sbjct: 67 LTTLKMSRPALGEQLEMQLISLAQSGRLKAQIDDEQLKTLLMRMQ---PKKRKTSITR 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.308
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,483,807
Number of Sequences: 539616
Number of extensions: 1181030
Number of successful extensions: 9037
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 7778
Number of HSP's gapped (non-prelim): 1272
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)