Query 033016
Match_columns 129
No_of_seqs 104 out of 317
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:14:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jxn_A Uncharacterized protein 100.0 5.9E-44 2E-48 264.9 -0.5 116 2-121 1-118 (127)
2 2cru_A Programmed cell death p 100.0 4.1E-43 1.4E-47 257.7 1.2 114 3-123 2-115 (118)
3 2hvu_A PDCD5-like protein; YMR 100.0 7.3E-43 2.5E-47 255.8 -4.2 112 3-118 2-115 (116)
4 1eij_A Hypothetical protein MT 100.0 4.1E-34 1.4E-38 197.7 2.5 76 43-121 5-80 (80)
5 2fh0_A Hypothetical 16.0 kDa p 100.0 6.7E-34 2.3E-38 197.0 2.8 76 44-119 4-81 (81)
6 1yyb_A Programmed cell death p 97.3 9.5E-05 3.2E-09 41.1 2.0 21 2-22 3-23 (27)
7 2ahq_A Sigma-54, RNA polymeras 61.7 13 0.00046 24.4 4.5 32 74-105 18-49 (76)
8 2es4_D Lipase chaperone; prote 45.3 89 0.003 25.5 7.8 62 46-109 252-313 (332)
9 1a0r_P Phosducin, MEKA, PP33; 41.5 16 0.00055 28.2 2.7 18 4-21 88-105 (245)
10 1ik9_C DNA ligase IV; DNA END 41.0 16 0.00055 20.9 2.0 18 90-107 18-35 (37)
11 1ufm_A COP9 complex subunit 4; 40.0 15 0.0005 24.2 1.9 39 54-95 27-65 (84)
12 3uky_C Nuclear CAP-binding pro 37.9 9.6 0.00033 21.5 0.6 7 123-129 10-16 (32)
13 4fur_A Urease subunit gamma 2; 33.9 33 0.0011 24.2 3.0 45 57-106 22-67 (104)
14 4ep8_A Urease subunit gamma; a 32.7 31 0.0011 24.1 2.7 33 57-89 18-51 (100)
15 4b4t_O 26S proteasome regulato 32.0 22 0.00076 29.0 2.2 23 74-96 321-343 (393)
16 4ac7_A Urease subunit gamma; h 31.6 34 0.0011 24.0 2.7 45 56-105 17-62 (100)
17 2trc_P Phosducin, MEKA, PP33; 30.5 31 0.0011 25.6 2.7 19 3-21 74-92 (217)
18 2l09_A ASR4154 protein; proto- 29.2 36 0.0012 21.7 2.4 47 55-106 5-52 (62)
19 2fvh_A Urease gamma subunit; p 29.0 38 0.0013 24.4 2.7 42 58-104 39-81 (120)
20 2kru_A Light-independent proto 25.6 34 0.0012 21.9 1.8 48 55-107 6-54 (63)
21 4b4t_R RPN7, 26S proteasome re 23.9 31 0.0011 28.2 1.7 49 44-95 331-382 (429)
22 3o39_A Periplasmic protein rel 23.8 1.3E+02 0.0044 20.7 4.6 20 46-65 82-101 (108)
23 1iqt_A AUF1, heterogeneous nuc 23.4 66 0.0023 18.7 2.8 20 88-107 5-24 (75)
24 4b4t_P 26S proteasome regulato 21.3 41 0.0014 27.8 1.9 21 75-95 374-394 (445)
25 1ng6_A Hypothetical protein YQ 20.4 86 0.0029 22.4 3.3 40 60-108 20-59 (148)
No 1
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-44 Score=264.91 Aligned_cols=116 Identities=26% Similarity=0.448 Sum_probs=95.1
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHH
Q 033016 2 ADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDII 81 (129)
Q Consensus 2 ~d~eLe~IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~L 81 (129)
||+||++||++||+|||++.|++++... +++++++.+.++++++||++||||+||+||+||+|||||+|.+||+||
T Consensus 1 MD~ELeaIR~~Rl~ELq~q~~~~~~~~~----~~~~~~~~~~ee~r~~iL~qiL~peAreRL~rI~lVkPekA~~VE~~L 76 (127)
T 2jxn_A 1 MDPELQCIRECRLAQLKNNSGGTNGDRN----SGANNGGGENSAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYL 76 (127)
T ss_dssp CCHHHHHHHHHHHHHSSCCSCCCSSCCC----CCSCCSCCSSCCCTTHHHHTTBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcchh----hhHHHHHHHHHHHHHHHHHHHcCHHHHHHHhcccccCHHHHHHHHHHH
Confidence 5679999999999999988765432211 112233345577899999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccCCHHHHHHHHHHhhhhccccc--eeEEeee
Q 033016 82 LRSAQMGQIVEKVSEERLISLLEQINTQTTKQT--KVTIQRR 121 (129)
Q Consensus 82 iqlaq~G~l~~kitd~~L~~iL~~i~~~~~k~~--~I~~~Rr 121 (129)
|+||++|+|++||||++||+||++|+.++++++ +|+|+|.
T Consensus 77 i~lAq~Gql~~kVsE~~Lk~iL~~vs~~~~kk~~~KI~f~r~ 118 (127)
T 2jxn_A 77 KKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIFEAA 118 (127)
T ss_dssp HHHHHHSCCCSCBCHHHHHHHHHHHHHHCCSCCCCSCSCC--
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhhhcccCcceeEeeehh
Confidence 999999999999999999999999998766554 5555544
No 2
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=100.00 E-value=4.1e-43 Score=257.72 Aligned_cols=114 Identities=39% Similarity=0.614 Sum_probs=102.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHH
Q 033016 3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIIL 82 (129)
Q Consensus 3 d~eLe~IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Li 82 (129)
|++|++||++||+|||+++|+ + + .+++++++++.+++|++||++||||+||+||+||+|||||+|++||+|||
T Consensus 2 ~~~Le~iR~~rl~eLq~q~g~--~---~--~~~~e~~~~~~ee~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~LI 74 (118)
T 2cru_A 2 SSGSSGLRRQRLAELQAKHGD--P---G--DAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLI 74 (118)
T ss_dssp CCSCCCCCCCCCCCCCCCSSC--C---T--HHHHHHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCC--c---c--hhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHH
Confidence 678999999999999987652 1 1 13345666778999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccCCHHHHHHHHHHhhhhccccceeEEeeeCC
Q 033016 83 RSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRRS 123 (129)
Q Consensus 83 qlaq~G~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~Rr~~ 123 (129)
+|||+|+|++||||++||+||++|+.++.++++|+|+||++
T Consensus 75 ~lAq~Gqi~~kItee~Lk~lL~~i~~~~~~~~~i~i~Rr~~ 115 (118)
T 2cru_A 75 QMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRSGP 115 (118)
T ss_dssp HHHHHTCCCSCBCHHHHHHHHHHHTTSCCCCCCCCCCCCCC
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHHhccCCCceeEeeecCC
Confidence 99999999999999999999999997777789999999975
No 3
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=100.00 E-value=7.3e-43 Score=255.76 Aligned_cols=112 Identities=27% Similarity=0.463 Sum_probs=96.3
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHH
Q 033016 3 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIIL 82 (129)
Q Consensus 3 d~eLe~IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Li 82 (129)
|+||++||++||+|||+++|++++++++. +++++++.+++|++||++||||+||+||+||+|||||+|.+||+|||
T Consensus 2 D~ELe~IR~~rl~eLq~q~~~~~~~~~~~----q~e~~~~~ee~r~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~li 77 (116)
T 2hvu_A 2 DPELQCIRECRLAQLKNNSGGTNGDRNSG----ANNGGGENSAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLK 77 (116)
T ss_dssp CSHHHHHHHHHHHTCSCTTSCSSCCCCCC----SSSCSSSCCCCSSTTTTTTBCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhccCCCCcchh----HHHHHHHHHHHHHHHHHHHcCHHHHHHHHhHhhcCHHHHHHHHHHHH
Confidence 67999999999999998876433322211 12344556889999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccCCHHHHHHHHHHhhhhcccc--ceeEE
Q 033016 83 RSAQMGQIVEKVSEERLISLLEQINTQTTKQ--TKVTI 118 (129)
Q Consensus 83 qlaq~G~l~~kitd~~L~~iL~~i~~~~~k~--~~I~~ 118 (129)
+||++|+|++||||++||+||++|++++.++ ++|+|
T Consensus 78 ~laq~Gql~~ki~e~~L~~lL~~i~~~~~kk~~~kI~f 115 (116)
T 2hvu_A 78 KLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIF 115 (116)
T ss_dssp HHHHHSCCSSCBCHHHHHHHHHHHHHHCCSCCCSSSSC
T ss_pred HHHHcCCCCCCcCHHHHHHHHHHHhHHHhhccCCceee
Confidence 9999999999999999999999999887654 88887
No 4
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=99.98 E-value=4.1e-34 Score=197.71 Aligned_cols=76 Identities=30% Similarity=0.572 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhhhhccccceeEEeee
Q 033016 43 ADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRR 121 (129)
Q Consensus 43 ~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~Rr 121 (129)
.+++|+++|++|||||||+||+||+|||||+|++||+|||+|||+|+|++||||++||+||++|++++ .+|+|+||
T Consensus 5 ~ee~r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i~~~~---~~i~i~Rr 80 (80)
T 1eij_A 5 LEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGKK---REIKISRK 80 (80)
T ss_dssp SCCSSHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHHHSCCC-----------
T ss_pred HHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHcccc---CceeeccC
Confidence 36789999999999999999999999999999999999999999999999999999999999998653 45899886
No 5
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=99.98 E-value=6.7e-34 Score=197.03 Aligned_cols=76 Identities=24% Similarity=0.458 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhh--hhccccceeEEe
Q 033016 44 DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQIN--TQTTKQTKVTIQ 119 (129)
Q Consensus 44 ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~--~~~~k~~~I~~~ 119 (129)
+++|++||++||||+||+||+||+|||||+|++||+|||+|||+|+|++||||++||+||++|+ +++.++++|+|+
T Consensus 4 e~~r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e~~L~~lL~~i~~~~~~~~~tkI~f~ 81 (81)
T 2fh0_A 4 SAPVGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKITEAEIVSILNGIAKQQNSQNNSKIIFE 81 (81)
T ss_dssp CCCSSHHHHTTBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBCHHHHHHHHHHHHHHCSSCCCSSCCCC
T ss_pred HHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhHhhccCccceeeeC
Confidence 5678999999999999999999999999999999999999999999999999999999999999 666678899884
No 6
>1yyb_A Programmed cell death protein 5; PDCD5(1-26), solution structure, apoptosis; NMR {Homo sapiens} SCOP: j.121.1.1
Probab=97.33 E-value=9.5e-05 Score=41.09 Aligned_cols=21 Identities=57% Similarity=0.893 Sum_probs=18.4
Q ss_pred CchHHHHHHHHHHHHHHHHhC
Q 033016 2 ADPELEAIRQRRMQELMAQQG 22 (129)
Q Consensus 2 ~d~eLe~IR~~rl~ELq~~~~ 22 (129)
+|+||++||++||++||++.|
T Consensus 3 ~d~ELeair~~rl~~lq~~~g 23 (27)
T 1yyb_A 3 ADEELEALRRQRLAELQAKHG 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHHHHHHhccC
Confidence 367999999999999998765
No 7
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=61.69 E-value=13 Score=24.42 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCCCccCCHHHHHHHHHH
Q 033016 74 ARGVEDIILRSAQMGQIVEKVSEERLISLLEQ 105 (129)
Q Consensus 74 A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~ 105 (129)
+..|-..|-.++..---..|+||+.|.++|..
T Consensus 18 ~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~ 49 (76)
T 2ahq_A 18 QGELMKLIKEIVENEDKRKPYSDQEIANILKE 49 (76)
T ss_dssp HHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 57899999999999888899999999999953
No 8
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=45.30 E-value=89 Score=25.52 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhhhh
Q 033016 46 RRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQ 109 (129)
Q Consensus 46 ~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~~~ 109 (129)
.+..+..+.+.|||-+||..+---+-+.-..|..|+-...+-- ..-+|+++-..-|.++-.+
T Consensus 252 ~~~~~R~~~vG~EaA~RL~~Ldqqra~wq~r~~~Y~~eR~~I~--~~~Ls~~~kq~qI~~LR~q 313 (332)
T 2es4_D 252 QMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIA--AQGLAPQDRDARIAQLRQQ 313 (332)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHH
Confidence 3456777899999999999999999999999999998866542 4568888877777777543
No 9
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=41.46 E-value=16 Score=28.23 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 033016 4 PELEAIRQRRMQELMAQQ 21 (129)
Q Consensus 4 ~eLe~IR~~rl~ELq~~~ 21 (129)
+.|+.+|++||++|++..
T Consensus 88 ~fL~~~r~~Rl~el~~~~ 105 (245)
T 1a0r_P 88 NCLRKYRRQCMQDMHQKL 105 (245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 469999999999999765
No 10
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=40.95 E-value=16 Score=20.87 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=15.6
Q ss_pred CCccCCHHHHHHHHHHhh
Q 033016 90 IVEKVSEERLISLLEQIN 107 (129)
Q Consensus 90 l~~kitd~~L~~iL~~i~ 107 (129)
+...+|.++|+.||.+|.
T Consensus 18 Y~rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 18 YFIDTDLNQLKEVFSGIK 35 (37)
T ss_dssp SSSCCCHHHHHHHHHTCC
T ss_pred ccCcCCHHHHHHHHHHcc
Confidence 457899999999999884
No 11
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=39.95 E-value=15 Score=24.24 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=26.8
Q ss_pred hCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCC
Q 033016 54 ILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVS 95 (129)
Q Consensus 54 iLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kit 95 (129)
+-+.=-.++|+.+-=+- ...||..|.+|+..|+|.++|+
T Consensus 27 ~Y~~Isl~~La~ll~ls---~~~vE~~ls~mI~~~~l~akID 65 (84)
T 1ufm_A 27 LYNNITFEELGALLEIP---AAKAEKIASQMITEGRMNGFID 65 (84)
T ss_dssp SCSEEEHHHHHHHTTSC---HHHHHHHHHHHHHTTSSCEEEE
T ss_pred hcCeeeHHHHHHHHCcC---HHHHHHHHHHHHhCCcEEEEEe
Confidence 33333344555444443 4578999999999999999975
No 12
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=37.94 E-value=9.6 Score=21.50 Aligned_cols=7 Identities=14% Similarity=0.586 Sum_probs=4.6
Q ss_pred CcCCCCC
Q 033016 123 SVLEDDD 129 (129)
Q Consensus 123 ~~~DdDd 129 (129)
..|||||
T Consensus 10 ~dfd~dd 16 (32)
T 3uky_C 10 GDFDEDE 16 (32)
T ss_pred ccCcccc
Confidence 5577765
No 13
>4fur_A Urease subunit gamma 2; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Brucella melitensis biovar abortus}
Probab=33.88 E-value=33 Score=24.17 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=35.5
Q ss_pred HHHHHHHhh-hhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHh
Q 033016 57 TEARERLAR-IALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQI 106 (129)
Q Consensus 57 ~eAreRL~r-I~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i 106 (129)
-=|+.|++| ++|-.||-...|-+.|+-.|.-|+ |=.+|.+.=..+
T Consensus 22 ~lA~rR~~RGlkLN~pEAvAlIs~~v~E~aRdG~-----sVaelM~~g~~~ 67 (104)
T 4fur_A 22 DVALKRKNKGLKLNHPEAVAVLSAYVLDGAREGK-----TVEEVMDGARSV 67 (104)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHTTT
T ss_pred HHHHHHHHcCcccCcHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHhhh
Confidence 347888886 999999999999999999999996 445555544333
No 14
>4ep8_A Urease subunit gamma; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* 1fwb_A* 1fwc_A* 1fwd_A* 1fwe_A* 1fwf_A* 1fwg_A* 1fwh_A* ...
Probab=32.73 E-value=31 Score=24.12 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=29.6
Q ss_pred HHHHHHHhh-hhccCchhHHHHHHHHHHHHhcCC
Q 033016 57 TEARERLAR-IALVKPEKARGVEDIILRSAQMGQ 89 (129)
Q Consensus 57 ~eAreRL~r-I~lvkPe~A~~VE~~Liqlaq~G~ 89 (129)
-=|+.|++| ++|-.||-...|-+.++-.|.-|+
T Consensus 18 ~lA~rR~~RGlkLN~pEAvAlIs~~v~E~aRdG~ 51 (100)
T 4ep8_A 18 LVAERRLARGLKLNYPESVALISAFIMEGARDGK 51 (100)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCcccCcHHHHHHHHHHHHHHHhcCC
Confidence 347888886 999999999999999999999996
No 15
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.02 E-value=22 Score=29.00 Aligned_cols=23 Identities=17% Similarity=0.501 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCCCccCCH
Q 033016 74 ARGVEDIILRSAQMGQIVEKVSE 96 (129)
Q Consensus 74 A~~VE~~Liqlaq~G~l~~kitd 96 (129)
.+.||..|+.+...|.|.|+||-
T Consensus 321 ~~evE~lli~aI~~glI~GkIDQ 343 (393)
T 4b4t_O 321 KDNVEHLVMRAISLGLLKGSIDQ 343 (393)
T ss_dssp HHHHHHHHHHHHHHSCSSSCEET
T ss_pred HHHHHHHHHHHHHcCCEEEEEcC
Confidence 35799999999999999999863
No 16
>4ac7_A Urease subunit gamma; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_A* 1ie7_A* 1ubp_A* 4ubp_A* 3ubp_A* 2ubp_A* 4ep8_A* 1a5l_A 1a5k_A 1a5n_A 1a5o_A 1ef2_C* 1ejr_A* 1ejs_A* 1ejt_A* 1eju_A* 1ejv_A* 1a5m_A* 1ejw_A* 1fwa_A* ...
Probab=31.61 E-value=34 Score=23.95 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=35.1
Q ss_pred CHHHHHHHhh-hhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHH
Q 033016 56 STEARERLAR-IALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQ 105 (129)
Q Consensus 56 t~eAreRL~r-I~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~ 105 (129)
-.=|+.|++| ++|-.||-...|-+.|+-.|.-|+ |=.+|..+-.+
T Consensus 17 ~~lA~rR~arGlkLN~pEAvAlI~~~ilE~aRdG~-----sVaelm~~g~~ 62 (100)
T 4ac7_A 17 SELLLRRKARGLKLNYPEAVAIITSFIMEGARDGK-----TVAMLMEEGKH 62 (100)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHGGG
T ss_pred HHHHHHHHHcccccccHHHHHHHHHHHHHHHHCCC-----CHHHHHHHhcc
Confidence 3447888876 999999999999999999999984 44556554433
No 17
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=30.54 E-value=31 Score=25.63 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.9
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 033016 3 DPELEAIRQRRMQELMAQQ 21 (129)
Q Consensus 3 d~eLe~IR~~rl~ELq~~~ 21 (129)
|+.|+.+|++||++|++..
T Consensus 74 ~~fl~~~r~~Rl~el~~~~ 92 (217)
T 2trc_P 74 EGCLRKYRRQCMQDMHQKL 92 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999755
No 18
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=29.20 E-value=36 Score=21.70 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=34.1
Q ss_pred CCHHHHHHHhhh-hccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHh
Q 033016 55 LSTEARERLARI-ALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQI 106 (129)
Q Consensus 55 Lt~eAreRL~rI-~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i 106 (129)
-||||..+|.+| ..|||---..+|.+-.. ..+ ..||-+.+-.-=+.+
T Consensus 5 Wt~EAe~~LkkIP~FVR~kvrr~tE~~Are----~G~-~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 5 WTSEAKTKLKNIPFFARSQAKARIEQLARQ----AEQ-DIVTPELVEQARLEF 52 (62)
T ss_dssp ECHHHHHHHHTSCGGGHHHHHHHHHHHHHH----TTC-SEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCHHHHHHHHHHHHHHHHH----cCC-CeEcHHHHHHHHHHH
Confidence 489999999999 88998888888877443 333 378877765544443
No 19
>2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein STR initiative, TB structural genomics consortium; 1.80A {Mycobacterium tuberculosis}
Probab=29.03 E-value=38 Score=24.39 Aligned_cols=42 Identities=33% Similarity=0.397 Sum_probs=33.8
Q ss_pred HHHHHHhh-hhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHH
Q 033016 58 EARERLAR-IALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 104 (129)
Q Consensus 58 eAreRL~r-I~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~ 104 (129)
=|+.||+| ++|-.||-...|-+.|+-.|.-|+ |=.+|.++-.
T Consensus 39 LA~rR~aRGlkLN~pEAvAlIs~~ilE~aRDG~-----sVAeLM~~G~ 81 (120)
T 2fvh_A 39 LARRRRARGLRLNHPEAIAVIADHILEGARDGR-----TVAELMASGR 81 (120)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHTT
T ss_pred HHHHHHHcccccCcHHHHHHHHHHHHHHhHcCC-----CHHHHHHHhh
Confidence 47788876 999999999999999999999997 4455554433
No 20
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=25.63 E-value=34 Score=21.88 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=35.2
Q ss_pred CCHHHHHHHhhh-hccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhh
Q 033016 55 LSTEARERLARI-ALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQIN 107 (129)
Q Consensus 55 Lt~eAreRL~rI-~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~ 107 (129)
-||||..+|++| ..|||---..+|.|-.... + ..||-+.+-.-=+.+.
T Consensus 6 Wt~EAe~~LkkIP~FVR~kvrr~tE~~Are~G----~-~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 6 WTAEAEKMLGKVPFFVRKKVRKNTDNYAREIG----E-PVVTADVFRKAKEHLG 54 (63)
T ss_dssp ECHHHHHHHTTSCHHHHHHHHHHHHHHHHHHT----C-SEECHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC----C-CeEcHHHHHHHHHHhh
Confidence 489999999999 7888888888888755443 3 3788777665544443
No 21
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.86 E-value=31 Score=28.18 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCHHHHH---HHhhhhccCchhHHHHHHHHHHHHhcCCCCccCC
Q 033016 44 DERRQMMLSQILSTEARE---RLARIALVKPEKARGVEDIILRSAQMGQIVEKVS 95 (129)
Q Consensus 44 ee~k~~iL~qiLt~eAre---RL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kit 95 (129)
...|...+.+++.|=-+= +|+..-=+- ...||..|.+|+..|+|.++|+
T Consensus 331 ~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s---~~~~E~~L~~lI~~g~l~akID 382 (429)
T 4b4t_R 331 REMRRKVYAQLLESYKTLSLKSMASAFGVS---VAFLDNDLGKFIPNKQLNCVID 382 (429)
T ss_dssp HHHHHHHHHHHHHTCSEEEHHHHHHHHTSC---HHHHHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHHHHHHHhHHhceeeHHHHHHHhCcC---HHHHHHHHHHHHHcCCeEEEEc
Confidence 344555666666553222 222222232 4678999999999999999986
No 22
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=23.80 E-value=1.3e+02 Score=20.69 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCHHHHHHHhh
Q 033016 46 RRQMMLSQILSTEARERLAR 65 (129)
Q Consensus 46 ~k~~iL~qiLt~eAreRL~r 65 (129)
..+.-+.+|||||-++-++.
T Consensus 82 r~~~qmy~lLTPEQk~q~~~ 101 (108)
T 3o39_A 82 ETQNKIYNILTPEQKKQFNA 101 (108)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 34667889999999988764
No 23
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=23.37 E-value=66 Score=18.74 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=18.0
Q ss_pred CCCCccCCHHHHHHHHHHhh
Q 033016 88 GQIVEKVSEERLISLLEQIN 107 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~ 107 (129)
|.|+..+|+++|+.++.+..
T Consensus 5 ~nLp~~~t~~~l~~~F~~~G 24 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGFG 24 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHHS
T ss_pred eCCCCCCCHHHHHHHHHhcC
Confidence 67889999999999999875
No 24
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.30 E-value=41 Score=27.77 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCCCCccCC
Q 033016 75 RGVEDIILRSAQMGQIVEKVS 95 (129)
Q Consensus 75 ~~VE~~Liqlaq~G~l~~kit 95 (129)
..||.+|.+|+..|.|.++|+
T Consensus 374 ~evE~~ls~mI~~g~i~akID 394 (445)
T 4b4t_P 374 SQTETYISDLVNQGIIYAKVN 394 (445)
T ss_dssp HHHHHHHHHHHHHTSSCCEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEc
Confidence 468999999999999999986
No 25
>1ng6_A Hypothetical protein YQEY; structural genomics, domain GATB/YQEY, PFAM02637, DUF186, PSI, protein structure initiative; 1.40A {Bacillus subtilis} SCOP: a.182.1.1
Probab=20.44 E-value=86 Score=22.38 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=26.5
Q ss_pred HHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhhh
Q 033016 60 RERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 60 reRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~~ 108 (129)
..||+.|++++-..-.. --.++ ..+||+++|..||..+..
T Consensus 20 ~~r~~~lR~l~aai~~~--------e~~~~-~~~lt~~~l~~li~~~~K 59 (148)
T 1ng6_A 20 KDKLTVVRMVKASLQNE--------AIKLK-KDSLTEDEELTVLSRELK 59 (148)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHTT-SSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--------hhccC-CCCCCHHHHHHHHHHHHH
Confidence 45888888876543221 11122 268999999999998874
Done!