Query 033016
Match_columns 129
No_of_seqs 104 out of 317
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 14:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033016.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033016hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2crua1 a.5.6.1 (A:8-112) Prog 100.0 8.2E-40 6E-44 234.3 3.6 105 9-120 1-105 (105)
2 d1eija_ a.5.6.1 (A:) Hypotheti 100.0 1.8E-31 1.3E-35 179.7 2.5 68 42-109 4-71 (72)
3 d1ufma_ a.4.5.47 (A:) COP9 sig 46.0 4.9 0.00036 25.0 1.9 46 60-123 33-78 (84)
4 d1cx4a1 b.82.3.2 (A:130-265) R 41.5 13 0.00095 23.3 3.6 52 67-119 1-52 (136)
5 d4ubpa_ d.8.1.1 (A:) Urease, g 39.6 11 0.00081 24.7 3.0 33 57-89 18-51 (100)
6 d1hw1a1 a.4.5.6 (A:5-78) Fatty 37.5 29 0.0021 20.4 4.6 32 73-104 4-38 (74)
7 d2trcp_ c.47.1.6 (P:) Phosduci 33.9 12 0.00087 26.4 2.7 19 4-22 75-93 (217)
8 d1e9ya2 d.8.1.1 (A:1-105) Urea 28.9 17 0.0013 23.9 2.6 33 57-89 18-51 (105)
9 d1nu4a_ d.58.7.1 (A:) Spliceso 27.4 22 0.0016 21.0 2.8 21 88-108 9-29 (91)
10 d2ghpa1 d.58.7.1 (A:116-196) U 26.7 18 0.0013 20.8 2.1 21 88-108 7-27 (81)
11 d2msta_ d.58.7.1 (A:) Neural R 25.1 17 0.0013 20.4 1.9 21 88-108 5-25 (75)
12 d1x0fa1 d.58.7.1 (A:183-257) N 24.6 20 0.0015 20.8 2.1 20 88-107 5-24 (75)
13 d2cqha1 d.58.7.1 (A:2-81) IGF- 24.5 20 0.0015 20.8 2.1 21 88-108 7-27 (80)
14 d1x5sa1 d.58.7.1 (A:8-97) Cold 24.4 21 0.0015 20.9 2.2 20 88-107 11-30 (90)
15 d2disa1 d.58.7.1 (A:8-103) Hyp 23.9 21 0.0015 21.3 2.2 21 88-108 7-27 (96)
16 d1u2fa_ d.58.7.1 (A:) Splicing 23.8 19 0.0014 21.2 1.9 21 88-108 7-27 (90)
17 d1ud0a_ a.8.4.1 (A:) DnaK {Rat 23.8 53 0.0039 19.5 4.2 35 74-108 3-40 (84)
18 d1vi0a2 a.121.1.1 (A:78-194) H 23.5 69 0.005 18.8 5.6 49 55-106 34-82 (117)
19 d1b7fa1 d.58.7.1 (A:123-204) S 23.3 19 0.0014 20.7 1.8 20 88-107 8-27 (82)
20 d2cqia1 d.58.7.1 (A:1-90) Nucl 22.8 23 0.0017 20.9 2.2 20 88-107 14-33 (90)
21 d2cpda1 d.58.7.1 (A:223-308) A 22.4 20 0.0014 20.9 1.8 21 88-108 14-34 (86)
22 d2cq2a1 d.58.7.1 (A:25-125) Al 22.3 24 0.0018 21.6 2.3 21 88-108 26-46 (101)
23 d1cvja1 d.58.7.1 (A:11-90) Pol 22.3 19 0.0014 20.8 1.6 21 88-108 6-26 (80)
24 d1l3ka2 d.58.7.1 (A:103-181) N 21.7 17 0.0012 20.8 1.3 21 88-108 8-28 (79)
25 d1x4ha1 d.58.7.1 (A:8-105) RNA 21.6 21 0.0015 21.0 1.8 20 88-107 14-33 (98)
26 d1no8a_ d.58.7.1 (A:) Nuclear 21.0 27 0.002 20.0 2.2 21 88-108 6-26 (78)
27 d1fxla1 d.58.7.1 (A:37-118) Hu 20.7 23 0.0017 20.2 1.8 20 88-107 8-27 (82)
28 d1x4ga1 d.58.7.1 (A:8-103) Nuc 20.5 29 0.0021 20.9 2.3 20 88-107 24-43 (96)
29 d1x5ta1 d.58.7.1 (A:8-90) Spli 20.5 24 0.0017 20.3 1.8 20 88-107 4-23 (83)
No 1
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=8.2e-40 Score=234.29 Aligned_cols=105 Identities=43% Similarity=0.672 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcC
Q 033016 9 IRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMG 88 (129)
Q Consensus 9 IR~~rl~ELq~~~~~~~~~~~~~~~~~qee~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G 88 (129)
||++||+|||++.|+++ ..++++++++.+++|++||++||||+||+||+||+|||||+|.+||+|||+||++|
T Consensus 1 IR~~rl~ElQ~q~~~~~-------~~~~~e~~~~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~liqlaq~G 73 (105)
T d2crua1 1 LRRQRLAELQAKHGDPG-------DAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYG 73 (105)
T ss_dssp CCCCCCCCCCCCSSCCT-------HHHHHHHHHHHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhcCcc-------hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhhcccCHHHHHHHHHHHHHHHHcC
Confidence 68899999998765321 12344555667889999999999999999999999999999999999999999999
Q ss_pred CCCccCCHHHHHHHHHHhhhhccccceeEEee
Q 033016 89 QIVEKVSEERLISLLEQINTQTTKQTKVTIQR 120 (129)
Q Consensus 89 ~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~R 120 (129)
+|++||||++||.||++|+++++++++|+|+|
T Consensus 74 ~i~~kisd~~Lk~iL~~is~~~~~~~~ik~~R 105 (105)
T d2crua1 74 QLSEKVSEQGLIEILKKVSQQTEKTTTVKFNR 105 (105)
T ss_dssp CCCSCBCHHHHHHHHHHHTTSCCCCCCCCCCC
T ss_pred CCCCCcCHHHHHHHHHHHhhcccccCccccCC
Confidence 99999999999999999998888889999987
No 2
>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=99.96 E-value=1.8e-31 Score=179.70 Aligned_cols=68 Identities=31% Similarity=0.569 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhhhh
Q 033016 42 EADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQ 109 (129)
Q Consensus 42 ~~ee~k~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~~~ 109 (129)
+.+++|+++|++|||||||+||+||+|||||+|.+||+|||+||++|+|++||||++||+||++++++
T Consensus 4 ~~e~qk~~iL~qiLt~eAreRL~~i~lvkPekA~~vE~~liqlaq~G~i~~kisd~~L~~iL~~is~~ 71 (72)
T d1eija_ 4 QLEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRVAGK 71 (72)
T ss_dssp SSCCSSHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHCCSSCCCCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHhccC
Confidence 34678999999999999999999999999999999999999999999999999999999999999863
No 3
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.00 E-value=4.9 Score=25.00 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=32.4
Q ss_pred HHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhhhhccccceeEEeeeCC
Q 033016 60 RERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQRRRS 123 (129)
Q Consensus 60 reRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~Rr~~ 123 (129)
.++|+..-=+- ...||..|.+|+..|.|.++|+. ....|.|.++..
T Consensus 33 l~~la~~l~l~---~~evE~~l~~mI~~~~i~akIDq---------------~~g~V~F~~~e~ 78 (84)
T d1ufma_ 33 FEELGALLEIP---AAKAEKIASQMITEGRMNGFIDQ---------------IDGIVHFETREA 78 (84)
T ss_dssp HHHHHHHTTSC---HHHHHHHHHHHHHTTSSCEEEET---------------TTTEEEECCSSC
T ss_pred HHHHHHHHCCC---HHHHHHHHHHHHhcCeEEEEEeC---------------CCCEEEECCCCc
Confidence 44555444343 35799999999999999999852 246777877754
No 4
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=41.53 E-value=13 Score=23.25 Aligned_cols=52 Identities=10% Similarity=0.220 Sum_probs=34.9
Q ss_pred hccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHhhhhccccceeEEe
Q 033016 67 ALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQINTQTTKQTKVTIQ 119 (129)
Q Consensus 67 ~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i~~~~~k~~~I~~~ 119 (129)
++|+|--.+... .|....+.-.+=..++++++..|+..+....-+.+.+.|.
T Consensus 1 ~~~~~kt~~~~~-~l~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~~I~~ 52 (136)
T d1cx4a1 1 RIIHPKTDDQRN-RLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVID 52 (136)
T ss_dssp CCCCCCCHHHHH-HHHHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEEC
T ss_pred CccccCCHHHHH-HHHHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCCEEEE
Confidence 467775544443 4445555555557899999999999998654456666663
No 5
>d4ubpa_ d.8.1.1 (A:) Urease, gamma-subunit {Bacillus pasteurii [TaxId: 1474]}
Probab=39.57 E-value=11 Score=24.74 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=29.7
Q ss_pred HHHHHHHhh-hhccCchhHHHHHHHHHHHHhcCC
Q 033016 57 TEARERLAR-IALVKPEKARGVEDIILRSAQMGQ 89 (129)
Q Consensus 57 ~eAreRL~r-I~lvkPe~A~~VE~~Liqlaq~G~ 89 (129)
.=|+.|++| |+|-.||-...|-+.++-.|..|+
T Consensus 18 ~lA~~R~aRGlkLN~pEAvAlIs~~v~E~aRdG~ 51 (100)
T d4ubpa_ 18 ELLLRRKARGLKLNYPEAVAIITSFIMEGARDGK 51 (100)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCcccCcHHHHHHHHHHHHHHhhcCC
Confidence 447888876 999999999999999999999997
No 6
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.49 E-value=29 Score=20.45 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHhcCCCC--ccC-CHHHHHHHHH
Q 033016 73 KARGVEDIILRSAQMGQIV--EKV-SEERLISLLE 104 (129)
Q Consensus 73 ~A~~VE~~Liqlaq~G~l~--~ki-td~~L~~iL~ 104 (129)
.+..++.+|+..+.+|.+. .++ |+.+|-..|.
T Consensus 4 ~~~~~~e~i~~~I~~g~~~~G~~LPs~~eLa~~~~ 38 (74)
T d1hw1a1 4 PAGFAEEYIIESIWNNRFPPGTILPAERELSELIG 38 (74)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCccHHHHHHHHC
Confidence 4677899999999999988 588 8888877764
No 7
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=33.86 E-value=12 Score=26.36 Aligned_cols=19 Identities=21% Similarity=0.273 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHhC
Q 033016 4 PELEAIRQRRMQELMAQQG 22 (129)
Q Consensus 4 ~eLe~IR~~rl~ELq~~~~ 22 (129)
+.|+++|++||+||+++..
T Consensus 75 ~~l~~~r~~Rl~el~~~~~ 93 (217)
T d2trcp_ 75 GCLRKYRRQCMQDMHQKLS 93 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3588999999999987654
No 8
>d1e9ya2 d.8.1.1 (A:1-105) Urease, gamma-subunit {Helicobacter pylori [TaxId: 210]}
Probab=28.86 E-value=17 Score=23.93 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=29.2
Q ss_pred HHHHHHHhh-hhccCchhHHHHHHHHHHHHhcCC
Q 033016 57 TEARERLAR-IALVKPEKARGVEDIILRSAQMGQ 89 (129)
Q Consensus 57 ~eAreRL~r-I~lvkPe~A~~VE~~Liqlaq~G~ 89 (129)
.=|+.|++| |+|-.||-...|-++++-.|..|.
T Consensus 18 ~lA~~R~aRGlkLN~pEAvAlIs~~v~E~aRdG~ 51 (105)
T d1e9ya2 18 ELAKKRKEKGIKLNYVEAVALISAHIMEEARAGK 51 (105)
T ss_dssp HHHHHHHHTCCCBCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcccccCcHHHHHHHHHHHHHHHhcCC
Confidence 347888876 999999999999999999999983
No 9
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.36 E-value=22 Score=21.05 Aligned_cols=21 Identities=24% Similarity=0.359 Sum_probs=18.1
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|+..+|+++|++.|..+..
T Consensus 9 ~nLp~~~t~~dl~~~l~~~f~ 29 (91)
T d1nu4a_ 9 NNLNEKIKKDELKKSLHAIFS 29 (91)
T ss_dssp ESCCTTSCHHHHHHHHHHHHG
T ss_pred eCCCCCCCHHHHHHHHHHHhc
Confidence 678899999999999987754
No 10
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.66 E-value=18 Score=20.85 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.6
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|+..+|+++|.+++.....
T Consensus 7 ~nLp~~~t~~~l~~~f~~~G~ 27 (81)
T d2ghpa1 7 TNFPPSYTQRNIRDLLQDINV 27 (81)
T ss_dssp ECCCTTCCHHHHHHHHHHTTC
T ss_pred ECCCCcCCHHHHHHHHHHhCc
Confidence 678999999999999999853
No 11
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.12 E-value=17 Score=20.36 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.4
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|+..+||++|+++..+...
T Consensus 5 ~nLp~~~te~~l~~~F~~~G~ 25 (75)
T d2msta_ 5 GGLSVNTTVEDVKHYFEQFGK 25 (75)
T ss_dssp ECCCSSCCHHHHHHHHHTTSC
T ss_pred eCCCCCCCHHHHHHHHHHhCC
Confidence 678999999999999998753
No 12
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.58 E-value=20 Score=20.81 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=18.1
Q ss_pred CCCCccCCHHHHHHHHHHhh
Q 033016 88 GQIVEKVSEERLISLLEQIN 107 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~ 107 (129)
|.|+..+||++|+++..+..
T Consensus 5 gnLp~~~te~~l~~~F~~~G 24 (75)
T d1x0fa1 5 GGLSPDTPEEKIREYFGGFG 24 (75)
T ss_dssp ESCCSSCCHHHHHHHHHHHS
T ss_pred cCCCCCCCHHHHHHHHHHhC
Confidence 68899999999999999874
No 13
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.55 E-value=20 Score=20.79 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.3
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|+..+|+++|++++.+...
T Consensus 7 ~nLp~~~te~~L~~~F~~~G~ 27 (80)
T d2cqha1 7 GNLSPAVTADDLRQLFGDRKL 27 (80)
T ss_dssp ECCCTTCCHHHHHHHHHHTTC
T ss_pred ECCCCCCCHHHHHHHHHHhCc
Confidence 678899999999999998753
No 14
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.40 E-value=21 Score=20.93 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=17.9
Q ss_pred CCCCccCCHHHHHHHHHHhh
Q 033016 88 GQIVEKVSEERLISLLEQIN 107 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~ 107 (129)
|.|+..+|+++|++++.+..
T Consensus 11 ~nLp~~~t~~~l~~~F~~~G 30 (90)
T d1x5sa1 11 GGLSFDTNEQSLEQVFSKYG 30 (90)
T ss_dssp ESCCTTCCHHHHHHHHHHHS
T ss_pred ECCCCcCCHHHHHHhhhccc
Confidence 67899999999999999874
No 15
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.94 E-value=21 Score=21.31 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=18.8
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|+..+|+++|++++.+..+
T Consensus 7 ~nLp~~~te~~l~~~f~~~g~ 27 (96)
T d2disa1 7 GGIPKMKKREEILEEIAKVTE 27 (96)
T ss_dssp ECCCTTSCHHHHHHHHHHHST
T ss_pred cCCCCcCCHHHHHHHHHHhCC
Confidence 678999999999999999864
No 16
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.85 E-value=19 Score=21.24 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.6
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|+..+||++|++++.+...
T Consensus 7 gNLp~~~te~~l~~~F~~~g~ 27 (90)
T d1u2fa_ 7 GNIPFGITEEAMMDFFNAQMR 27 (90)
T ss_dssp CSCCTTCCTTHHHHHHHHHHT
T ss_pred cCCCCccchHHHHHHHHhhCc
Confidence 789999999999999998653
No 17
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=23.83 E-value=53 Score=19.50 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHH---hcCCCCccCCHHHHHHHHHHhhh
Q 033016 74 ARGVEDIILRSA---QMGQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 74 A~~VE~~Liqla---q~G~l~~kitd~~L~~iL~~i~~ 108 (129)
+..+|+||.++= .-..+..++++++...|...+..
T Consensus 3 ~N~LEsyiy~~r~~l~d~~~~~kl~~~dk~~i~~~l~e 40 (84)
T d1ud0a_ 3 SHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcchhhccccCHHHHHHHHHHHHH
Confidence 457888887753 33456688999998888888765
No 18
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=23.46 E-value=69 Score=18.76 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=37.3
Q ss_pred CCHHHHHHHhhhhccCchhHHHHHHHHHHHHhcCCCCccCCHHHHHHHHHHh
Q 033016 55 LSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLEQI 106 (129)
Q Consensus 55 Lt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kitd~~L~~iL~~i 106 (129)
++|+.++++..+ .-+....++..|......|.++..++-..+..++-.+
T Consensus 34 ~~~~~~~~i~~~---~~~~~~~~~~ii~~g~~~G~ir~d~d~~~~a~~i~g~ 82 (117)
T d1vi0a2 34 SNLELRQKINEI---LKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGT 82 (117)
T ss_dssp CSHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTCBCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH---HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHH
Confidence 567777776654 4466788999999999999999878888777655544
No 19
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=23.30 E-value=19 Score=20.67 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=17.9
Q ss_pred CCCCccCCHHHHHHHHHHhh
Q 033016 88 GQIVEKVSEERLISLLEQIN 107 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~ 107 (129)
|.|+..+|+++|++++.+..
T Consensus 8 ~nLp~~~t~~~l~~~F~~~G 27 (82)
T d1b7fa1 8 NYLPQDMTDRELYALFRAIG 27 (82)
T ss_dssp ECCCTTCCHHHHHHHHHTTS
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 67889999999999999875
No 20
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.81 E-value=23 Score=20.87 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=18.0
Q ss_pred CCCCccCCHHHHHHHHHHhh
Q 033016 88 GQIVEKVSEERLISLLEQIN 107 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~ 107 (129)
|.|+..+|+++|.+++.+..
T Consensus 14 ~nLp~~~te~~l~~~F~~~G 33 (90)
T d2cqia1 14 GNLSRDVTEVLILQLFSQIG 33 (90)
T ss_dssp ESCCTTCCHHHHHHHHHHHS
T ss_pred ECCCCCCCHHHHHHHHHhcC
Confidence 67889999999999999875
No 21
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.39 E-value=20 Score=20.91 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.3
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|+..+|+++|++++++...
T Consensus 14 ~nLp~~~te~~l~~~F~~~g~ 34 (86)
T d2cpda1 14 RNLMLSTSEEMIEKEFNNIKP 34 (86)
T ss_dssp ESCCTTCCHHHHHHHHHTTST
T ss_pred cCCCCCCCHHHHHHhhcccce
Confidence 678899999999999988753
No 22
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.34 E-value=24 Score=21.63 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.8
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|...||+++|..+.++...
T Consensus 26 g~L~~~vte~~L~~~F~~~G~ 46 (101)
T d2cq2a1 26 GGLGNGVSRNQLLPVLEKCGL 46 (101)
T ss_dssp CTGGGTCCHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHhhCc
Confidence 789999999999999998753
No 23
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.32 E-value=19 Score=20.83 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.3
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|+..+||++|.+++.+..+
T Consensus 6 ~nL~~~~te~~l~~~F~~~G~ 26 (80)
T d1cvja1 6 GDLHPDVTEAMLYEKFSPAGP 26 (80)
T ss_dssp ESCCTTCCHHHHHHHHGGGSC
T ss_pred eCCCCcCCHHHHHHHHHHhCC
Confidence 678999999999999988753
No 24
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.67 E-value=17 Score=20.77 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.4
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|+..+||++|+++.++...
T Consensus 8 ~nLp~~~te~~l~~~F~~~G~ 28 (79)
T d1l3ka2 8 GGIKEDTEEHHLRDYFEQYGK 28 (79)
T ss_dssp ECCTTTCCHHHHHHHHTTTSC
T ss_pred CCCCCcCCHHHHHHHHHHhcc
Confidence 678999999999999988753
No 25
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.59 E-value=21 Score=21.04 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=18.1
Q ss_pred CCCCccCCHHHHHHHHHHhh
Q 033016 88 GQIVEKVSEERLISLLEQIN 107 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~ 107 (129)
|.|+..+||++|++++.+..
T Consensus 14 ~nLp~~~te~~l~~~f~~~G 33 (98)
T d1x4ha1 14 RNLSFDSEEEALGEVLQQFG 33 (98)
T ss_dssp ESCCTTCCHHHHHHHHHTTS
T ss_pred cCCCCcCCHHHHHHHHhccc
Confidence 67899999999999999874
No 26
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.03 E-value=27 Score=20.02 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.3
Q ss_pred CCCCccCCHHHHHHHHHHhhh
Q 033016 88 GQIVEKVSEERLISLLEQINT 108 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~~ 108 (129)
|.|+..+|+++|+++..+...
T Consensus 6 ~nLp~~~~~~~l~~~F~~~G~ 26 (78)
T d1no8a_ 6 SNLDFGVSDADIQELFAEFGT 26 (78)
T ss_dssp ESCCTTCCHHHHHHHHHHHSC
T ss_pred ECCCCCCCHHHHHHHHHHhCC
Confidence 578899999999999998853
No 27
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.70 E-value=23 Score=20.24 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.7
Q ss_pred CCCCccCCHHHHHHHHHHhh
Q 033016 88 GQIVEKVSEERLISLLEQIN 107 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~ 107 (129)
|.|+..+||++|++++++..
T Consensus 8 ~nLp~~~te~~l~~~f~~~G 27 (82)
T d1fxla1 8 NYLPQNMTQEEFRSLFGSIG 27 (82)
T ss_dssp ESCCTTCCHHHHHHHHHTTS
T ss_pred ECCCCCCCHHHHHHHHHHhC
Confidence 67889999999999998864
No 28
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.53 E-value=29 Score=20.91 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=17.9
Q ss_pred CCCCccCCHHHHHHHHHHhh
Q 033016 88 GQIVEKVSEERLISLLEQIN 107 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~ 107 (129)
|.|...+|+++|++++.+..
T Consensus 24 ~nL~~~~te~~L~~~F~~fG 43 (96)
T d1x4ga1 24 GGIASGLTDQLMRQTFSPFG 43 (96)
T ss_dssp ECCSSCCCHHHHHHHHHHHS
T ss_pred cCCCCCCCHHHHHHHHHHhC
Confidence 67888999999999999875
No 29
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.46 E-value=24 Score=20.33 Aligned_cols=20 Identities=15% Similarity=0.335 Sum_probs=17.6
Q ss_pred CCCCccCCHHHHHHHHHHhh
Q 033016 88 GQIVEKVSEERLISLLEQIN 107 (129)
Q Consensus 88 G~l~~kitd~~L~~iL~~i~ 107 (129)
|.|+..+||++|.++..+..
T Consensus 4 ~nLp~~~te~~l~~~F~~~G 23 (83)
T d1x5ta1 4 GNLDPEIDEKLLYDTFSAFG 23 (83)
T ss_dssp ECCCTTCCHHHHHHHHHTTS
T ss_pred cCCCCcCcHHHHHHHHHHhC
Confidence 67889999999999998864
Done!