BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033020
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9W6|TAF13_PONAB Transcription initiation factor TFIID subunit 13 OS=Pongo abelii
GN=TAF13 PE=2 SV=1
Length = 124
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 75/94 (79%), Gaps = 2/94 (2%)
Query: 26 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSVE 85
KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E+++++ HKA +G ++G++ VE
Sbjct: 27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 84
Query: 86 DFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 119
D ++LIRKDP K R +LL+M EELK+ARKAF+
Sbjct: 85 DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
>sp|P61216|TAF13_MOUSE Transcription initiation factor TFIID subunit 13 OS=Mus musculus
GN=Taf13 PE=2 SV=1
Length = 124
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 75/94 (79%), Gaps = 2/94 (2%)
Query: 26 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSVE 85
KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E+++++ HKA +G ++G++ VE
Sbjct: 27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 84
Query: 86 DFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 119
D ++LIRKDP K R +LL+M EELK+ARKAF+
Sbjct: 85 DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
>sp|Q15543|TAF13_HUMAN Transcription initiation factor TFIID subunit 13 OS=Homo sapiens
GN=TAF13 PE=1 SV=1
Length = 124
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 75/94 (79%), Gaps = 2/94 (2%)
Query: 26 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSVE 85
KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E+++++ HKA +G ++G++ VE
Sbjct: 27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 84
Query: 86 DFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 119
D ++LIRKDP K R +LL+M EELK+ARKAF+
Sbjct: 85 DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
>sp|Q148M7|TAF13_BOVIN Transcription initiation factor TFIID subunit 13 OS=Bos taurus
GN=TAF13 PE=2 SV=1
Length = 124
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 75/94 (79%), Gaps = 2/94 (2%)
Query: 26 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSVE 85
KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E+++++ HKA +G ++G++ VE
Sbjct: 27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 84
Query: 86 DFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 119
D ++LIRKDP K R +LL+M EELK+ARKAF+
Sbjct: 85 DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
>sp|Q54CN8|TAF13_DICDI Transcription initiation factor TFIID subunit 13 OS=Dictyostelium
discoideum GN=taf13 PE=3 SV=1
Length = 106
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Query: 24 SFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLS 83
S KRKR +F K+L+HMMYGFGD PL E++ L+E++V E++ ++ KA + +KRGK
Sbjct: 2 STKRKR-MFSKELKHMMYGFGDVREPLHESIDLLEELVFEFIQEMTLKAAQVSNKRGKFQ 60
Query: 84 VEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 119
ED ++L+RKDP K R ELL M EELK+A+KAF+
Sbjct: 61 TEDLVFLVRKDPKKYYRVIELLRMNEELKKAKKAFD 96
>sp|O60076|TAF13_SCHPO Transcription initiation factor TFIID subunit 13
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf13 PE=3 SV=3
Length = 111
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 65/97 (67%)
Query: 27 RKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSVED 86
R++ +F KDL+ +MY FGDD NP P+++ ++E+IVV+Y++++ +A + R K+ V+D
Sbjct: 13 RRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAGNRNKVKVDD 72
Query: 87 FLYLIRKDPPKLNRCTELLSMQEELKQARKAFEVDEE 123
F + +R DP KL R ELL +Q+ + R + +++
Sbjct: 73 FKFALRDDPKKLGRVEELLVLQKMIADTRNVMKYNKD 109
>sp|P11747|TAF13_YEAST Transcription initiation factor TFIID subunit 13 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF13 PE=1
SV=2
Length = 167
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 63/102 (61%), Gaps = 7/102 (6%)
Query: 27 RKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLA----HKAQDLGSKRGKL 82
+K +F KD+ ++Y +GD P PL TV ++++V Y+ D+ H AQ+ S+R KL
Sbjct: 6 KKTNLFNKDVSSLLYAYGDVPQPLQATVQCLDELVSGYLVDVCTNAFHTAQN--SQRNKL 63
Query: 83 SVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAF-EVDEE 123
+EDF + +RKDP KL R EL++ + + +A+K F E D +
Sbjct: 64 RLEDFKFALRKDPIKLGRAEELIATNKLITEAKKQFNETDNQ 105
>sp|O14311|SPT3_SCHPO SAGA complex subunit spt3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=spt3 PE=1 SV=2
Length = 307
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 32 FQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLY 89
++ ++Q MM+ G+ +PLPET LVE+++ V ++ +A +L +RG ++VED +
Sbjct: 10 YRVEIQQMMFILGEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSRSITVEDLFF 69
Query: 90 LIRKDPPKLNRCTELLSMQEELKQARK 116
LIR D K+NR LS +E K+A++
Sbjct: 70 LIRHDRAKVNRLKTYLSWKEVRKKAKE 96
>sp|O75486|SUPT3_HUMAN Transcription initiation protein SPT3 homolog OS=Homo sapiens
GN=SUPT3H PE=1 SV=2
Length = 399
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 63/121 (52%), Gaps = 8/121 (6%)
Query: 14 AGSSQPCETTSFKRKRG---VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAH 70
A S T+S R G F +LQ MMY GD PL ET LVED+V + +L
Sbjct: 87 AASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQ 146
Query: 71 KAQDLGSKRGK--LSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFEVD---EEKL 125
+A ++ RG ++ ED L+L+RKD KL R + + +++ + K + D E+KL
Sbjct: 147 QAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDKL 206
Query: 126 A 126
+
Sbjct: 207 S 207
>sp|O13472|SPT3_KLULA Protein SPT3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SPT3 PE=3
SV=1
Length = 328
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 32 FQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSV--EDFLY 89
++ ++Q MM+ G++ P ET +L+EDIV V ++ +A + RG S+ ED ++
Sbjct: 7 YRVEIQQMMFVSGENNEPPVETTSLIEDIVRGQVVEILLQATRTANCRGSKSIVPEDVIF 66
Query: 90 LIRKDPPKLNRCTELLSMQE 109
LIR D K+NR LS ++
Sbjct: 67 LIRHDKAKVNRLRTYLSWKD 86
>sp|P06844|SPT3_YEAST Protein SPT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SPT3 PE=1 SV=1
Length = 337
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 32 FQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSV--EDFLY 89
++ ++Q MM+ G+ +P ET +L+EDIV V ++ ++ RG S+ ED ++
Sbjct: 7 YRVEIQQMMFVSGEINDPPVETTSLIEDIVRGQVIEILLQSNKTAHLRGSRSILPEDVIF 66
Query: 90 LIRKDPPKLNRCTELLSMQEELKQAR 115
LIR D K+NR LS ++ K A+
Sbjct: 67 LIRHDKAKVNRLRTYLSWKDLRKNAK 92
>sp|Q89AY1|DAPE_BUCBP Succinyl-diaminopimelate desuccinylase OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=dapE PE=3 SV=1
Length = 377
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 48 NPLPETVALVEDIVVEYVSDLAHKAQDL----GSKRGKLSVEDF-----LYLIRKDPPKL 98
NP V L+ DIVV V +L H + +L G+ G+ E L LI K K
Sbjct: 292 NPFLTKVGLLSDIVVRSVEELCHISPNLSTSGGTSDGRFIAELGSQIIELGLINKTIHKA 351
Query: 99 NRCTEL 104
N C E+
Sbjct: 352 NECVEI 357
>sp|P55619|SYRM1_RHISN HTH-type transcriptional regulator SyrM 1 OS=Rhizobium sp. (strain
NGR234) GN=syrM1 PE=1 SV=1
Length = 338
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 14/112 (12%)
Query: 15 GSSQPCETTSFKRKRGVFQKDLQHMMYG-FGDDPNPLPETVALVEDIVVEYVSDLAHKAQ 73
G SQP + + R RGVF DL ++ G G P P + + + V++ + +
Sbjct: 60 GLSQPSVSRALIRLRGVFNDDL--LVRGSSGMVPTPHAQRLGQMLPPVLDSIRGMVDPGL 117
Query: 74 DLGSKR--GKLSVED---------FLYLIRKDPPKLNRCTELLSMQEELKQA 114
D G R ++++ D FL L+R+ P L+ T+ L L+Q
Sbjct: 118 DQGEWRLTARMAMPDHQAIVLLPPFLPLMRERAPNLDIVTDSLLALRRLEQG 169
>sp|P56862|MET3_ASPTE Sulfate adenylyltransferase OS=Aspergillus terreus GN=met3 PE=3
SV=1
Length = 568
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 20 CETTSFKRKRGVFQKDLQHMMYGFG--DDPNPLPETVALVEDIVVEYVSDLAHK 71
CE T KRG++ K + + GF DDP PE LV D+ + V + H+
Sbjct: 504 CEKTD---KRGIYAKARRGEIKGFTGVDDPYEAPENADLVVDVSKQSVRSIVHE 554
>sp|Q0CC19|MET3_ASPTN Sulfate adenylyltransferase OS=Aspergillus terreus (strain NIH 2624
/ FGSC A1156) GN=met3 PE=3 SV=1
Length = 574
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 20 CETTSFKRKRGVFQKDLQHMMYGFG--DDPNPLPETVALVEDIVVEYVSDLAHK 71
CE T KRG++ K + + GF DDP PE LV D+ + V + H+
Sbjct: 510 CEKTD---KRGIYAKARRGEIKGFTGVDDPYEAPENADLVVDVSKQSVRSIVHE 560
>sp|O14214|TRM10_SCHPO tRNA (guanine(9)-N1)-methyltransferase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=trm10 PE=1 SV=1
Length = 304
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 32 FQKDLQHMMYGFGDDPNPLPE----TVALVEDIV--VEYVSDLAHKAQDLGSKRGKLSVE 85
F+ + ++Y D N + E + ++ IV Y + +KA + G K KL ++
Sbjct: 173 FESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPID 232
Query: 86 DFLYLIRKDPPKLNRCTELLSMQEELKQARKAF 118
+++ + + +N+ E+LS+ E + KAF
Sbjct: 233 EYIKITDRKILTVNQVFEILSLWLEYRDWEKAF 265
>sp|Q10064|YAMB_SCHPO Uncharacterized PI3/PI4-kinase family protein C1F5.11c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1F5.11c PE=3 SV=1
Length = 3655
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 25 FKRKRGVFQKDLQHMMYGFGDDPNPLPETVAL---VEDIVVEYVSDLAHKA--QDLGSKR 79
F RG + L +Y FG PNP PE AL + +++E+ +DL K +++ S
Sbjct: 1889 FIEHRGRYVPILIDSLYKFGAIPNPNPEIRALSLGLIKVLLEW-NDLQLKVDQKEIFSNN 1947
Query: 80 GKLSVEDFLY---LIRKDPPKLNRCTELLSMQEEL 111
K ++ +L+ + +P C+E +S+ E L
Sbjct: 1948 QKRAILSYLFRFVCLFSEPFTEGLCSEAISLLERL 1982
>sp|Q6C1W9|TRM10_YARLI tRNA (guanine(9)-N1)-methyltransferase OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=TRM10 PE=3 SV=1
Length = 371
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 71 KAQDLGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFE 119
KA G + G+L + DF+ L + N E+L ELK + AFE
Sbjct: 242 KASKQGLQTGRLPIADFIKLSGRKVLTTNHVFEILLKWTELKDWKAAFE 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,852,994
Number of Sequences: 539616
Number of extensions: 1892788
Number of successful extensions: 4017
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3989
Number of HSP's gapped (non-prelim): 35
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)