Query 033020
Match_columns 129
No_of_seqs 104 out of 236
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_A TAFII18; histone fold, 99.8 2.1E-21 7.3E-26 120.6 6.3 45 31-75 1-45 (45)
2 3b0b_B CENP-S, centromere prot 98.1 1.1E-05 3.7E-10 57.7 7.2 75 32-106 21-99 (107)
3 3b0c_T CENP-T, centromere prot 97.3 0.00054 1.9E-08 48.8 6.4 66 31-97 8-75 (111)
4 1id3_B Histone H4; nucleosome 96.9 0.002 6.7E-08 45.2 5.6 64 30-94 28-93 (102)
5 2yfw_B Histone H4, H4; cell cy 96.8 0.0022 7.5E-08 44.8 5.6 64 30-94 29-94 (103)
6 1tzy_D Histone H4-VI; histone- 96.8 0.0023 7.7E-08 44.7 5.6 66 28-94 27-94 (103)
7 2hue_C Histone H4; mini beta s 96.8 0.0034 1.2E-07 42.3 6.3 65 29-94 9-75 (84)
8 1ku5_A HPHA, archaeal histon; 96.8 0.0044 1.5E-07 40.1 6.3 48 46-93 21-70 (70)
9 1n1j_A NF-YB; histone-like PAI 96.7 0.0079 2.7E-07 40.9 7.4 77 33-113 11-90 (93)
10 3v9r_A MHF1, uncharacterized p 96.6 0.0043 1.5E-07 42.9 5.9 52 47-98 31-84 (90)
11 1h3o_B Transcription initiatio 96.6 0.0089 3E-07 40.2 7.2 59 36-94 11-71 (76)
12 4dra_A Centromere protein S; D 96.6 0.0077 2.6E-07 43.3 7.2 59 47-105 46-106 (113)
13 3vh5_A CENP-S; histone fold, c 96.6 0.0084 2.9E-07 44.6 7.4 60 47-106 38-99 (140)
14 1b67_A Protein (histone HMFA); 96.3 0.014 4.9E-07 37.2 6.3 49 45-93 16-66 (68)
15 1jfi_B DR1 protein, transcript 96.3 0.049 1.7E-06 41.8 10.3 65 29-93 14-80 (179)
16 1n1j_B NF-YC; histone-like PAI 96.2 0.019 6.5E-07 39.5 7.2 66 31-96 20-87 (97)
17 2byk_B Chrac-14; nucleosome sl 96.1 0.03 1E-06 40.6 8.1 72 35-106 14-90 (128)
18 3b0c_W CENP-W, centromere prot 95.9 0.018 6.2E-07 37.8 5.5 62 31-93 5-69 (76)
19 2byk_A Chrac-16; nucleosome sl 95.7 0.02 6.9E-07 42.2 5.6 64 31-94 20-86 (140)
20 1taf_A TFIID TBP associated fa 95.5 0.065 2.2E-06 35.1 7.1 57 36-93 7-65 (68)
21 2ly8_A Budding yeast chaperone 95.1 0.045 1.5E-06 39.7 5.9 54 44-97 60-115 (121)
22 4g92_C HAPE; transcription fac 94.8 0.079 2.7E-06 37.7 6.4 66 30-95 41-108 (119)
23 1jfi_A Transcription regulator 94.7 0.06 2E-06 37.1 5.3 74 31-105 12-87 (98)
24 1f1e_A Histone fold protein; a 94.2 0.068 2.3E-06 40.0 5.0 50 48-97 99-150 (154)
25 1taf_B TFIID TBP associated fa 93.6 0.19 6.3E-06 33.1 5.7 56 36-92 12-69 (70)
26 1f1e_A Histone fold protein; a 93.4 0.19 6.4E-06 37.6 6.2 56 35-91 9-67 (154)
27 2l5a_A Histone H3-like centrom 92.4 0.31 1.1E-05 38.9 6.4 52 44-95 174-227 (235)
28 3r45_A Histone H3-like centrom 90.2 0.74 2.5E-05 34.7 6.2 56 37-92 88-147 (156)
29 2hue_B Histone H3; mini beta s 88.8 1.3 4.6E-05 29.4 6.1 63 30-92 7-71 (77)
30 3nqu_A Histone H3-like centrom 87.8 1.4 4.8E-05 32.5 6.2 46 47-92 84-131 (140)
31 2f8n_G Core histone macro-H2A. 87.7 1.7 5.6E-05 31.0 6.4 64 33-96 25-90 (120)
32 2nqb_D Histone H2B; nucleosome 87.2 2.7 9.3E-05 30.4 7.3 65 28-92 31-97 (123)
33 2jss_A Chimera of histone H2B. 86.8 4.3 0.00015 30.7 8.6 62 31-92 4-67 (192)
34 1tzy_B Histone H2B; histone-fo 86.6 2.9 9.8E-05 30.4 7.2 65 28-92 34-100 (126)
35 3vlf_B 26S protease regulatory 86.6 0.53 1.8E-05 30.9 3.0 47 62-108 37-88 (88)
36 1tzy_C Histone H3; histone-fol 86.2 2.5 8.4E-05 31.0 6.7 57 36-92 72-130 (136)
37 4dra_E Centromere protein X; D 86.1 2.1 7.2E-05 29.0 5.9 45 45-89 29-75 (84)
38 3b0b_C CENP-X, centromere prot 85.5 2.1 7.3E-05 28.6 5.6 53 36-88 14-70 (81)
39 2yfv_A Histone H3-like centrom 82.6 4.4 0.00015 28.1 6.4 64 29-92 30-98 (100)
40 3nqj_A Histone H3-like centrom 81.4 4.5 0.00015 27.1 5.9 62 31-92 8-73 (82)
41 2nqb_C Histone H2A; nucleosome 80.0 5.5 0.00019 28.4 6.3 64 33-96 26-91 (123)
42 1f66_C Histone H2A.Z; nucleoso 78.6 5.6 0.00019 28.6 6.0 64 33-96 30-96 (128)
43 2f8n_K Histone H2A type 1; nuc 77.9 5.4 0.00018 29.5 5.9 64 33-96 47-112 (149)
44 1tzy_A Histone H2A-IV; histone 77.8 6.8 0.00023 28.1 6.3 63 34-96 29-93 (129)
45 1id3_C Histone H2A.1; nucleoso 76.5 5.8 0.0002 28.6 5.6 63 34-96 29-93 (131)
46 3kw6_A 26S protease regulatory 71.7 3.4 0.00012 25.9 3.1 38 56-93 33-72 (78)
47 3aji_B S6C, proteasome (prosom 69.2 5.6 0.00019 25.1 3.7 39 56-94 31-71 (83)
48 2dzn_B 26S protease regulatory 65.9 5.5 0.00019 25.4 3.2 37 58-94 30-68 (82)
49 1wh7_A ZF-HD homeobox family p 65.0 7 0.00024 25.4 3.6 32 24-55 16-52 (80)
50 2krk_A 26S protease regulatory 63.7 6 0.0002 25.8 3.1 44 50-93 35-80 (86)
51 2jx0_A ARF GTPase-activating p 61.5 9 0.00031 28.1 3.9 59 37-95 2-67 (135)
52 2jss_A Chimera of histone H2B. 61.5 27 0.00093 26.2 6.8 44 53-96 129-174 (192)
53 2cuj_A Transcriptional adaptor 48.3 34 0.0012 23.7 5.0 29 78-106 72-100 (108)
54 1wh5_A ZF-HD homeobox family p 45.2 28 0.00095 22.3 3.9 33 23-55 15-52 (80)
55 1v32_A AT5G08430, hypothetical 42.9 50 0.0017 22.6 5.1 71 27-106 11-87 (101)
56 1bh9_B TAFII28; histone fold, 41.6 76 0.0026 21.1 6.8 58 35-93 21-81 (89)
57 2a7o_A Huntingtin interacting 41.4 11 0.00038 26.8 1.6 42 52-93 13-59 (112)
58 4ayb_Q DNA-directed RNA polyme 40.9 6.2 0.00021 27.5 0.2 36 82-121 36-71 (104)
59 4b4t_H 26S protease regulatory 38.9 15 0.0005 31.6 2.2 50 58-107 412-466 (467)
60 1vej_A Riken cDNA 4931431F19; 34.5 38 0.0013 22.0 3.3 16 30-45 27-43 (74)
61 1dgu_A Calcium-saturated CIB; 34.2 82 0.0028 21.2 5.2 19 78-96 156-174 (183)
62 2aqe_A Transcriptional adaptor 34.2 39 0.0013 22.5 3.3 30 78-107 54-83 (90)
63 3v9r_B MHF2, uncharacterized p 33.7 53 0.0018 22.3 3.9 45 44-88 17-70 (88)
64 2i5u_A DNAD domain protein; st 32.7 96 0.0033 19.7 5.7 40 41-83 11-59 (83)
65 2wx4_A DCP1, decapping protein 32.0 31 0.0011 20.8 2.3 20 84-103 15-34 (46)
66 2da3_A Alpha-fetoprotein enhan 28.7 60 0.0021 20.0 3.4 31 25-55 17-48 (80)
67 4b4t_J 26S protease regulatory 28.5 44 0.0015 28.0 3.4 35 59-93 352-388 (405)
68 2wx3_A MRNA-decapping enzyme 1 27.8 42 0.0014 20.7 2.4 21 84-104 17-37 (51)
69 2elj_A Transcriptional adapter 27.7 1.2E+02 0.0039 20.0 4.8 28 79-106 55-83 (88)
70 4a6d_A Hydroxyindole O-methylt 27.4 2.2E+02 0.0075 22.2 7.4 61 49-109 4-71 (353)
71 3cra_A Protein MAZG; tandem-re 27.1 1.2E+02 0.004 24.2 5.6 58 61-118 57-127 (265)
72 3nar_A ZHX1, zinc fingers and 27.0 40 0.0014 22.0 2.5 39 16-54 16-55 (96)
73 1k94_A Grancalcin; penta-EF-ha 26.7 1.4E+02 0.0047 19.6 5.7 31 78-122 117-147 (165)
74 3cuq_A Vacuolar-sorting protei 26.2 86 0.0029 24.5 4.6 79 30-116 38-126 (234)
75 3dtp_E RLC, myosin regulatory 25.6 64 0.0022 22.5 3.5 14 79-92 103-116 (196)
76 4b4t_L 26S protease subunit RP 25.5 55 0.0019 27.5 3.5 34 60-93 386-421 (437)
77 4b4t_I 26S protease regulatory 24.7 58 0.002 27.7 3.5 35 58-92 385-421 (437)
78 4b4t_M 26S protease regulatory 24.5 53 0.0018 27.6 3.2 39 57-95 383-423 (434)
79 2kt0_A Nanog, homeobox protein 24.4 1.3E+02 0.0043 18.8 4.4 31 25-55 22-53 (84)
80 2l4h_A Calcium and integrin-bi 24.2 1.1E+02 0.0036 21.9 4.5 19 78-96 187-205 (214)
81 1u5t_A Appears to BE functiona 23.7 90 0.0031 24.3 4.2 74 30-116 58-140 (233)
82 3fes_A ATP-dependent CLP endop 22.4 80 0.0027 21.6 3.4 34 63-96 84-119 (145)
83 2qez_A Ethanolamine ammonia-ly 21.5 38 0.0013 29.2 1.8 34 28-61 171-207 (455)
84 2di4_A Zinc protease, cell div 21.5 2.7E+02 0.0092 21.4 6.6 25 49-73 143-167 (238)
85 1lv7_A FTSH; alpha/beta domain 21.0 87 0.003 22.8 3.5 33 60-92 216-250 (257)
86 2opo_A Polcalcin CHE A 3; calc 20.9 1.4E+02 0.0047 17.5 5.2 50 31-96 28-77 (86)
87 3abq_A Ethanolamine ammonia-ly 20.3 38 0.0013 29.2 1.5 34 28-61 170-206 (453)
88 1h3o_A Transcription initiatio 20.2 1.1E+02 0.0039 19.9 3.5 64 30-94 6-69 (75)
89 3h4m_A Proteasome-activating n 20.2 86 0.0029 23.0 3.4 36 58-93 220-257 (285)
No 1
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=99.84 E-value=2.1e-21 Score=120.57 Aligned_cols=45 Identities=49% Similarity=1.037 Sum_probs=43.3
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033020 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDL 75 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~ 75 (129)
+|.+||++|||||||+++|++|||++|||||++||+++|++|.++
T Consensus 1 lF~~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~v 45 (45)
T 1bh9_A 1 LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45 (45)
T ss_dssp CCHHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999864
No 2
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.08 E-value=1.1e-05 Score=57.72 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=62.2
Q ss_pred cHHHHHHHHhhhCC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcChhhHhHHHHHHH
Q 033020 32 FQKDLQHMMYGFGD--DPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKDPPKLNRCTELLS 106 (129)
Q Consensus 32 f~~EI~~mMy~fGD--~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D~~Kl~Rl~~lL~ 106 (129)
+.--|..+.--.|. ...-.++++..|.+++..|+.+++..|...|...|+ |+.||+.+++|++|..+++|++++.
T Consensus 21 l~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~~~~~ 99 (107)
T 3b0b_B 21 VHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSD 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHHHHHH
Confidence 33344555544554 246789999999999999999999999999987665 9999999999999999999999874
No 3
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.32 E-value=0.00054 Score=48.75 Aligned_cols=66 Identities=11% Similarity=0.241 Sum_probs=54.4
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcChhh
Q 033020 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKDPPK 97 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D~~K 97 (129)
+=..-|+.+|-.+|. ..-..+++..+.+++.+|+.+++..|...|...|+ |+.+|+++++|+++.-
T Consensus 8 lP~a~I~Ri~r~~g~-~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 8 IASSLIKQIFSHYVK-TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp --CHHHHHHHHHHHC-SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 334567777777765 66888899999999999999999999999986664 9999999999998643
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.86 E-value=0.002 Score=45.20 Aligned_cols=64 Identities=8% Similarity=0.174 Sum_probs=54.3
Q ss_pred cccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhhcC
Q 033020 30 GVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIRKD 94 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR~D 94 (129)
++=..-|+.++-..| +..-..+....+.++|..|+.++++.|...+...+ .|+.+|+.++|++.
T Consensus 28 ~ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 28 GITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GSCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 455667888888777 47788889999999999999999999999997544 49999999999965
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=96.83 E-value=0.0022 Score=44.81 Aligned_cols=64 Identities=9% Similarity=0.192 Sum_probs=53.3
Q ss_pred cccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhhcC
Q 033020 30 GVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIRKD 94 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR~D 94 (129)
++=..-|..++-..|- ..-..+....+.++|..|+.+++..|...+...+ .|+.+|+.++||+.
T Consensus 29 gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 29 GITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp -CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4555677888887776 6777889999999999999999999999997544 49999999999964
No 6
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=96.82 E-value=0.0023 Score=44.70 Aligned_cols=66 Identities=8% Similarity=0.165 Sum_probs=56.7
Q ss_pred cccccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhhcC
Q 033020 28 KRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIRKD 94 (129)
Q Consensus 28 ~k~~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR~D 94 (129)
.+++-..-|..++-..|- ..-..+....+.++|..|+.+++..|...+...+ .|+.+|+.++||+.
T Consensus 27 ~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 27 IQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp GGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 446777889999988875 6778889999999999999999999999997544 49999999999975
No 7
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.82 E-value=0.0034 Score=42.26 Aligned_cols=65 Identities=8% Similarity=0.191 Sum_probs=55.5
Q ss_pred ccccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcC
Q 033020 29 RGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKD 94 (129)
Q Consensus 29 k~~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D 94 (129)
+++-..-|+.++-..|- ..-..+....+.++|..|+.++++.|...+...|+ ++.+|+.++|++.
T Consensus 9 ~~ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 45666778888887775 77888899999999999999999999999976554 9999999999975
No 8
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.76 E-value=0.0044 Score=40.10 Aligned_cols=48 Identities=21% Similarity=0.399 Sum_probs=43.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhc
Q 033020 46 DPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRK 93 (129)
Q Consensus 46 ~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~ 93 (129)
+..-.++.+..+.+++..|+.+++..|...|...|+ |+.+|+.+++|+
T Consensus 21 ~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 21 AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 577889999999999999999999999999976554 999999999874
No 9
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.67 E-value=0.0079 Score=40.85 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhhcChhhHhHHHHHHHHHH
Q 033020 33 QKDLQHMMYGFG-DDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIRKDPPKLNRCTELLSMQE 109 (129)
Q Consensus 33 ~~EI~~mMy~fG-D~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR~D~~Kl~Rl~~lL~~k~ 109 (129)
..=|+.+|-.-| |+..-..|+..++-+.+..||..|...|..+|...+ .|+.+|+..+++ .++-..+..-++.
T Consensus 11 ~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~----~l~F~~~i~~~~~ 86 (93)
T 1n1j_A 11 IANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS----TLGFDSYVEPLKL 86 (93)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH----HTTCGGGHHHHHH
T ss_pred hhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH----HcCcHhhHHHHHH
Confidence 445777777774 567789999999999999999999999999997544 499999999997 6666666666665
Q ss_pred HHHH
Q 033020 110 ELKQ 113 (129)
Q Consensus 110 ~ik~ 113 (129)
.+.+
T Consensus 87 ~l~~ 90 (93)
T 1n1j_A 87 YLQK 90 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 10
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0043 Score=42.90 Aligned_cols=52 Identities=13% Similarity=0.297 Sum_probs=46.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcChhhH
Q 033020 47 PNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKDPPKL 98 (129)
Q Consensus 47 ~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D~~Kl 98 (129)
-+..++++..|-+++-+|+.++...+...|...|+ |+.||+..++|++|.=+
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~ 84 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQ 84 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHH
Confidence 46889999999999999999999999999987665 99999999999998643
No 11
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.62 E-value=0.0089 Score=40.16 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=47.3
Q ss_pred HHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcC
Q 033020 36 LQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKD 94 (129)
Q Consensus 36 I~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D 94 (129)
|+.|+--..=.....++.-.++-+|.-+||-+++..|+++|..|+. +.+.|+.|.|.+.
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 4445544444456677777799999999999999999999999985 8999999988753
No 12
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=96.61 E-value=0.0077 Score=43.33 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=50.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcChhhHhHHHHHH
Q 033020 47 PNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKDPPKLNRCTELL 105 (129)
Q Consensus 47 ~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D~~Kl~Rl~~lL 105 (129)
....++++..|-+++-.|+.++...+...|...|+ |+.||+..++|++|.=+.=|+++.
T Consensus 46 ~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~~~ 106 (113)
T 4dra_A 46 MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKS 106 (113)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHHHH
Confidence 35889999999999999999999999999976665 999999999999987665555543
No 13
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=96.55 E-value=0.0084 Score=44.61 Aligned_cols=60 Identities=18% Similarity=0.203 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcChhhHhHHHHHHH
Q 033020 47 PNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKDPPKLNRCTELLS 106 (129)
Q Consensus 47 ~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D~~Kl~Rl~~lL~ 106 (129)
....++++..|-+++-.|+.++...+...|...|+ |+.||+..++|++|.=+.-|+++..
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~~ 99 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSD 99 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHHH
Confidence 35788999999999999999999999999987665 9999999999999987777777664
No 14
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=96.27 E-value=0.014 Score=37.18 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=43.2
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhc
Q 033020 45 DDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRK 93 (129)
Q Consensus 45 D~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~ 93 (129)
++..-..++..++.+.+..|+..|...|..+|...++ |+.+|+..++|.
T Consensus 16 ~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 16 GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4467889999999999999999999999999976554 999999999874
No 15
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.25 E-value=0.049 Score=41.84 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=57.0
Q ss_pred ccccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhc
Q 033020 29 RGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRK 93 (129)
Q Consensus 29 k~~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~ 93 (129)
..+-..=|..+|-..|....-..|+..+|-+.+.+||..|...|..++...|+ |+.+||+.+|..
T Consensus 14 ~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 14 LTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp CCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 35777889999999886667889999999999999999999999999976554 999999999984
No 16
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.22 E-value=0.019 Score=39.45 Aligned_cols=66 Identities=15% Similarity=0.071 Sum_probs=58.6
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcChh
Q 033020 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKDPP 96 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D~~ 96 (129)
+=..=|+.+|-.-+|+..-..++.-++-..+-.|+.+|+..|...|...++ |+.+||..+++++..
T Consensus 20 lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~ 87 (97)
T 1n1j_B 20 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQ 87 (97)
T ss_dssp CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGG
T ss_pred CCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcH
Confidence 446678999999999999999999999999999999999999999875443 999999999999864
No 17
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.12 E-value=0.03 Score=40.57 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=56.6
Q ss_pred HHHHHHhhh-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhhcCh--hhHhHHHHHHH
Q 033020 35 DLQHMMYGF-GDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIRKDP--PKLNRCTELLS 106 (129)
Q Consensus 35 EI~~mMy~f-GD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR~D~--~Kl~Rl~~lL~ 106 (129)
=|..+|-.. -|+..-..++..+|-+.+..||..|...|..++...+ .|+.+||+.+|...- .-+.-++.+|.
T Consensus 14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~lk~~l~ 90 (128)
T 2byk_B 14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLE 90 (128)
T ss_dssp HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHHHHHHH
T ss_pred HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 377788844 4778899999999999999999999999999987544 499999999999762 33334444443
No 18
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=95.86 E-value=0.018 Score=37.84 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=49.8
Q ss_pred ccHHHHHHHHh-hhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhhc
Q 033020 31 VFQKDLQHMMY-GFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIRK 93 (129)
Q Consensus 31 ~f~~EI~~mMy-~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR~ 93 (129)
+-..=|..+|- ..+|. .-..|+..+|-+.+.+|+..|..+|...|...| .|+.+|+..+++.
T Consensus 5 LP~A~V~rI~K~~~p~~-~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 5 VPRGTLRKIIKKHKPHL-RLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCHHHHHHHHHHHCTTC-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred ccccHHHHHHHHhCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 33445667776 55764 567899999999999999999999999997555 4999999998764
No 19
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.65 E-value=0.02 Score=42.18 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=50.1
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhh-hccC--CCChhHHHHHhhcC
Q 033020 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLG-SKRG--KLSVEDFLYLIRKD 94 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A-~~Rg--kis~eDl~FllR~D 94 (129)
+=..=|+.+|-.-.|+..-..++.-+|-..+--||..|+..|..+| ...+ .|+.+||..+++++
T Consensus 20 LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 20 LPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp ---------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred CCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 3345588889888999999999999999999999999999999999 5433 49999999999986
No 20
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.51 E-value=0.065 Score=35.08 Aligned_cols=57 Identities=12% Similarity=0.227 Sum_probs=46.5
Q ss_pred HHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhc
Q 033020 36 LQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRK 93 (129)
Q Consensus 36 I~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~ 93 (129)
|..++-..|= .+=.+..+..+-|++..|..+++..|..+|...|+ |+.||+..+++.
T Consensus 7 i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 7 IMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 4455555565 56677888888999999999999999999987775 999999998764
No 21
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.045 Score=39.67 Aligned_cols=54 Identities=6% Similarity=0.122 Sum_probs=42.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhhcChhh
Q 033020 44 GDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIRKDPPK 97 (129)
Q Consensus 44 GD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR~D~~K 97 (129)
|.++.-..+..+-+-+++.+|+.++++.|..++...| .++.+|+.|++++.-..
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ 115 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRT 115 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCG
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCc
Confidence 4556666667777888888888999999998886544 59999999999876443
No 22
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=94.83 E-value=0.079 Score=37.72 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=58.1
Q ss_pred cccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhhcCh
Q 033020 30 GVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIRKDP 95 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR~D~ 95 (129)
.+=..=|+.+|-.-.|+..-..++.-++-..+-.||.+|+..|...|...+ .|+.+||.-+++++.
T Consensus 41 ~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e 108 (119)
T 4g92_C 41 QLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSD 108 (119)
T ss_dssp SSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred CCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCc
Confidence 355667999998888888999999999999999999999999999997544 399999999999985
No 23
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=94.68 E-value=0.06 Score=37.08 Aligned_cols=74 Identities=8% Similarity=0.058 Sum_probs=55.0
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhhcChhhHhHHHHHH
Q 033020 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIRKDPPKLNRCTELL 105 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR~D~~Kl~Rl~~lL 105 (129)
+=..=|..+|-.-+|+..-..++.-++-..+--|+.+|+..|.+.|...+ .|+.+||.-++++|. .|..|.+++
T Consensus 12 fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e-~l~FL~div 87 (98)
T 1jfi_A 12 FPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEG-DPAANKARK 87 (98)
T ss_dssp CCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------------
T ss_pred CChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCc-hhhHHHhcC
Confidence 33667999999999999999999999999999999999999999987544 499999999999863 344444444
No 24
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=94.21 E-value=0.068 Score=40.04 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcChhh
Q 033020 48 NPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKDPPK 97 (129)
Q Consensus 48 ~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D~~K 97 (129)
.-..+....+-+++.+|+..++..|...|...|+ |+.+|+.++++++--|
T Consensus 99 RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 99 RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 3446788899999999999999999999986554 9999999999987443
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=93.61 E-value=0.19 Score=33.08 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=44.2
Q ss_pred HHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCChhHHHHHhh
Q 033020 36 LQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSK--RGKLSVEDFLYLIR 92 (129)
Q Consensus 36 I~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~--Rgkis~eDl~FllR 92 (129)
|+.+-=..|= .+-.++....+=+-|-.++.+++++|.+++.. |.+++++||-.+||
T Consensus 12 v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 12 MKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4444444554 45677888888889999999999999999964 55699999998886
No 26
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=93.39 E-value=0.19 Score=37.61 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=48.8
Q ss_pred HHHHHHhhh-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHh
Q 033020 35 DLQHMMYGF-GDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLI 91 (129)
Q Consensus 35 EI~~mMy~f-GD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~Fll 91 (129)
-|..+|--. |+ ..-..+....+-+.+.+|+..+...|...|...|+ |+.+|+++++
T Consensus 9 ~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 9 AIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp HHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 355566555 88 78899999999999999999999999999987665 9999999999
No 27
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=92.36 E-value=0.31 Score=38.87 Aligned_cols=52 Identities=8% Similarity=0.158 Sum_probs=44.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhhcCh
Q 033020 44 GDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIRKDP 95 (129)
Q Consensus 44 GD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR~D~ 95 (129)
|.++.-..+...-+-+++..|+.++++.|..++...| .++.+|+.|++++-.
T Consensus 174 gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 174 GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 5567888888889999999999999999999997544 499999999998653
No 28
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=90.20 E-value=0.74 Score=34.66 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=42.1
Q ss_pred HHHHhhhCC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhh
Q 033020 37 QHMMYGFGD--DPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIR 92 (129)
Q Consensus 37 ~~mMy~fGD--~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR 92 (129)
+++.--|.+ .-.=..+.+..|.+..-.|+++|...|..+|...++ |..+||-.+.|
T Consensus 88 REIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 88 REICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp HHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred HHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 344444442 234567888899999999999999999999976555 88899887654
No 29
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=88.78 E-value=1.3 Score=29.41 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=49.7
Q ss_pred cccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhh
Q 033020 30 GVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIR 92 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR 92 (129)
-.|..=|+.+.-.|...-.=..+.+..+.+..-.|+.+|...|..+|...|+ |..+|+-.+.|
T Consensus 7 ~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 7 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 3566666666655644455677888899999999999999999999987776 88899988765
No 30
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=87.78 E-value=1.4 Score=32.53 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=38.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhh
Q 033020 47 PNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIR 92 (129)
Q Consensus 47 ~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR 92 (129)
-.=..+.+..+.+..-.|+++|...|..+|...++ |..+|+-.+.|
T Consensus 84 ~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 84 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 44567888899999999999999999999977665 88899887654
No 31
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=87.66 E-value=1.7 Score=31.02 Aligned_cols=64 Identities=6% Similarity=0.059 Sum_probs=47.8
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCChhHHHHHhhcChh
Q 033020 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSK--RGKLSVEDFLYLIRKDPP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~--Rgkis~eDl~FllR~D~~ 96 (129)
..-|..+|---++...-...+.-++-.++-.+..+++..|.+.|.. +.+|+.+||..++|+|..
T Consensus 25 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeE 90 (120)
T 2f8n_G 25 VGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEE 90 (120)
T ss_dssp HHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred hHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHH
Confidence 4557777777677666666666677777777777888888877754 335999999999999964
No 32
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=87.17 E-value=2.7 Score=30.40 Aligned_cols=65 Identities=9% Similarity=0.215 Sum_probs=53.0
Q ss_pred cccccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhh
Q 033020 28 KRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIR 92 (129)
Q Consensus 28 ~k~~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR 92 (129)
++..|.-=|-.+|--.+=..--..+++.+|..+|.+..-.|..+|.+++...++ |+..||-.++|
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 446777777777766654344678999999999999999999999999975444 99999999887
No 33
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=86.81 E-value=4.3 Score=30.74 Aligned_cols=62 Identities=11% Similarity=0.225 Sum_probs=48.2
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhh
Q 033020 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIR 92 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR 92 (129)
.|..=|..++---+=...-..+++.+|+.++.+.+.-|+.+|.+++...+ .++..||..++|
T Consensus 4 ~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 4 TYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp TTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred hHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 34444554444443335588999999999999999999999999996544 499999999998
No 34
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=86.60 E-value=2.9 Score=30.41 Aligned_cols=65 Identities=9% Similarity=0.211 Sum_probs=53.0
Q ss_pred cccccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhh
Q 033020 28 KRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIR 92 (129)
Q Consensus 28 ~k~~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR 92 (129)
++..|.-=|-.+|--.+=..--..+++.+|..+|.+..-.|..+|.+++...++ |+..||-.++|
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 446777777777766654445778999999999999999999999999975444 99999999887
No 35
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=86.57 E-value=0.53 Score=30.93 Aligned_cols=47 Identities=13% Similarity=0.175 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcC---hhhHhHHHHHHHHH
Q 033020 62 VEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKD---PPKLNRCTELLSMQ 108 (129)
Q Consensus 62 ~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D---~~Kl~Rl~~lL~~k 108 (129)
---|..+|.+|.-.|-+++. |+.+||.-++++= +.|-++...|+.|+
T Consensus 37 GADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 37 GAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 34588999999988876664 9999999998853 45566677787774
No 36
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=86.22 E-value=2.5 Score=30.97 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=44.1
Q ss_pred HHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhh
Q 033020 36 LQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIR 92 (129)
Q Consensus 36 I~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR 92 (129)
|+++.--|...-.=..+.+..+.+..-.|+.+|...|..+|...++ |..+|+-.+.|
T Consensus 72 VREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 72 VREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 3344444433355667888899999999999999999999987776 88899988765
No 37
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=86.07 E-value=2.1 Score=28.98 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=38.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCChhHHHH
Q 033020 45 DDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG--KLSVEDFLY 89 (129)
Q Consensus 45 D~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg--kis~eDl~F 89 (129)
|...-..+++.++-+++.-|+.+-+.+|...|...| .+.++||-=
T Consensus 29 ~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 29 DKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 666788999999999999999999999999887555 488888753
No 38
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=85.48 E-value=2.1 Score=28.63 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=40.9
Q ss_pred HHHHHh-hhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHH
Q 033020 36 LQHMMY-GFG-DDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFL 88 (129)
Q Consensus 36 I~~mMy-~fG-D~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~ 88 (129)
|..+++ .|. |...-..+++.++-+++.-|+.+-+.+|...|...|. +.++||-
T Consensus 14 I~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LE 70 (81)
T 3b0b_C 14 VERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVE 70 (81)
T ss_dssp HHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHH
Confidence 344443 444 3445689999999999999999999999999876664 8888874
No 39
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=82.61 E-value=4.4 Score=28.08 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=48.1
Q ss_pred ccccHHHHHHHHhhhCC---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhh
Q 033020 29 RGVFQKDLQHMMYGFGD---DPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIR 92 (129)
Q Consensus 29 k~~f~~EI~~mMy~fGD---~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR 92 (129)
|-.|..=|+.+.-.|.. .-.=..+.+..+.+..-.|+.+|...|..+|...|+ |...|+-.+.|
T Consensus 30 k~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 30 RMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp HHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 34566656666644433 445567888899999999999999999999987776 78899988765
No 40
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=81.42 E-value=4.5 Score=27.13 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=46.7
Q ss_pred ccHHHHHHHHhhhC--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhh
Q 033020 31 VFQKDLQHMMYGFG--DDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIR 92 (129)
Q Consensus 31 ~f~~EI~~mMy~fG--D~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR 92 (129)
.|..=|+++..-|. ..-.=..+.+..+.+..-.|+.+|...|..+|...++ |..+|+-.+.|
T Consensus 8 PF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 8 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp HHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 45555555554444 2345567888999999999999999999999976665 88899987655
No 41
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=79.98 E-value=5.5 Score=28.36 Aligned_cols=64 Identities=6% Similarity=0.069 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCChhHHHHHhhcChh
Q 033020 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSK--RGKLSVEDFLYLIRKDPP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~--Rgkis~eDl~FllR~D~~ 96 (129)
..=|..+|----....-...+.-++-.++-.+..+++..|.+.|.. +.+|+.+||..++|+|..
T Consensus 26 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeE 91 (123)
T 2nqb_C 26 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 91 (123)
T ss_dssp HHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHH
Confidence 3455555543333344455555566666666666777777777754 345999999999999964
No 42
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=78.59 E-value=5.6 Score=28.55 Aligned_cols=64 Identities=8% Similarity=0.060 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhCCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCChhHHHHHhhcChh
Q 033020 33 QKDLQHMMYGFGDDP-NPLPETVALVEDIVVEYVSDLAHKAQDLGSK--RGKLSVEDFLYLIRKDPP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~-~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~--Rgkis~eDl~FllR~D~~ 96 (129)
..=|..+|---++.. .-...+.-++-.++-.+..+++..|.+.|.. +.+|+.+||..++|+|..
T Consensus 30 V~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeE 96 (128)
T 1f66_C 30 VGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 96 (128)
T ss_dssp HHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHH
T ss_pred hHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHH
Confidence 455667776555543 2333344455555555555677777776653 335999999999999964
No 43
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=77.90 E-value=5.4 Score=29.52 Aligned_cols=64 Identities=6% Similarity=0.074 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCChhHHHHHhhcChh
Q 033020 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSK--RGKLSVEDFLYLIRKDPP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~--Rgkis~eDl~FllR~D~~ 96 (129)
..-|..+|----....-...+.-++-.++-.+..+++..|.+.|.. +.+|+.+||..++|+|..
T Consensus 47 VgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeE 112 (149)
T 2f8n_K 47 VGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEE 112 (149)
T ss_dssp HHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHH
T ss_pred HHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHH
Confidence 3445555544333344444555566666666666777777777653 345999999999999964
No 44
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=77.79 E-value=6.8 Score=28.15 Aligned_cols=63 Identities=6% Similarity=0.078 Sum_probs=41.5
Q ss_pred HHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCChhHHHHHhhcChh
Q 033020 34 KDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSK--RGKLSVEDFLYLIRKDPP 96 (129)
Q Consensus 34 ~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~--Rgkis~eDl~FllR~D~~ 96 (129)
.=|..+|----+...-...+.-++-.++-.+..+++..|.+.|.. +.+|+.+||..++|+|..
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeE 93 (129)
T 1tzy_A 29 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEE 93 (129)
T ss_dssp HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHH
Confidence 345555543223344455556666666666667777777777754 345999999999999964
No 45
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=76.53 E-value=5.8 Score=28.59 Aligned_cols=63 Identities=6% Similarity=0.076 Sum_probs=39.3
Q ss_pred HHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCChhHHHHHhhcChh
Q 033020 34 KDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSK--RGKLSVEDFLYLIRKDPP 96 (129)
Q Consensus 34 ~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~--Rgkis~eDl~FllR~D~~ 96 (129)
.=|..+|----+...-...+.-++-.++-.+..+++..|.+.|.. +.+|+.+||..++|+|..
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeE 93 (131)
T 1id3_C 29 GRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDE 93 (131)
T ss_dssp HHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHH
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHH
Confidence 345555543223334444555555556555666777777776643 345999999999999964
No 46
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=71.71 E-value=3.4 Score=25.94 Aligned_cols=38 Identities=18% Similarity=0.216 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhc
Q 033020 56 LVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRK 93 (129)
Q Consensus 56 liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~ 93 (129)
.-+.+.---|..+|..|...|-+++. |+.+||.-++++
T Consensus 33 ~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 33 LMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 33445556689999999999877775 999999988864
No 47
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=69.22 E-value=5.6 Score=25.13 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcC
Q 033020 56 LVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKD 94 (129)
Q Consensus 56 liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D 94 (129)
.-+.+.---|..+|..|...|-+++. |+.+||.-++++=
T Consensus 31 ~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 31 RPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp SSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 33445556688899999999877663 9999999888753
No 48
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=65.86 E-value=5.5 Score=25.35 Aligned_cols=37 Identities=5% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcC
Q 033020 58 EDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKD 94 (129)
Q Consensus 58 EdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D 94 (129)
+.+.---|..+|..|...|-+++. |+.+||.-++++=
T Consensus 30 ~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 30 DSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 344445678889999888876664 9999999998764
No 49
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=64.97 E-value=7 Score=25.42 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=23.5
Q ss_pred cccccccccHHHHHHHHhhhCC-----CCCCcHHHHH
Q 033020 24 SFKRKRGVFQKDLQHMMYGFGD-----DPNPLPETVA 55 (129)
Q Consensus 24 ~~~~~k~~f~~EI~~mMy~fGD-----~~~P~~eTv~ 55 (129)
..++++..|..+-...|..|-. .++|..+...
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~ 52 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVE 52 (80)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHH
Confidence 3456667899887666668888 8888877664
No 50
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=63.66 E-value=6 Score=25.80 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhc
Q 033020 50 LPETVALVEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRK 93 (129)
Q Consensus 50 ~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~ 93 (129)
+.+-+..-+.+.---|..||.+|...|-+++. |+.+||.-++.+
T Consensus 35 l~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 35 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34444455555666788999999988876654 999999988864
No 51
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=61.47 E-value=9 Score=28.11 Aligned_cols=59 Identities=29% Similarity=0.393 Sum_probs=41.8
Q ss_pred HHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------cCCCChhHHHHHhhcCh
Q 033020 37 QHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSK-------RGKLSVEDFLYLIRKDP 95 (129)
Q Consensus 37 ~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~-------Rgkis~eDl~FllR~D~ 95 (129)
..|||+..+...|..|.|-.--|.|+.-|.+|+..|...-.. |=++-+.|++=++=++|
T Consensus 2 ~~~~~~~~~~~~P~~e~Vvr~TE~ITk~IqeLl~AaQ~~~~~sfvpcserI~~AV~el~aLfp~~p 67 (135)
T 2jx0_A 2 SHMLDGDPDPGLPSTEDVILKTEQVTKNIQELLRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRP 67 (135)
T ss_dssp ---CCSSCBSSCSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCSSB
T ss_pred CcccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhccccCccccHHHHHHHHHHHHHHhcCCCC
Confidence 368999999999999999999999999999999888754110 11235667766664444
No 52
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=61.47 E-value=27 Score=26.21 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCChhHHHHHhhcChh
Q 033020 53 TVALVEDIVVEYVSDLAHKAQDLGS--KRGKLSVEDFLYLIRKDPP 96 (129)
Q Consensus 53 Tv~liEdIV~~~i~~l~~~A~~~A~--~Rgkis~eDl~FllR~D~~ 96 (129)
+.-++-.++-....+++..|.+.|. .+.+|+.+||..++|+|..
T Consensus 129 A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~e 174 (192)
T 2jss_A 129 AAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDE 174 (192)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHH
Confidence 3344444444444555556666554 3556999999999999964
No 53
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=48.35 E-value=34 Score=23.70 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=26.6
Q ss_pred ccCCCChhHHHHHhhcChhhHhHHHHHHH
Q 033020 78 KRGKLSVEDFLYLIRKDPPKLNRCTELLS 106 (129)
Q Consensus 78 ~Rgkis~eDl~FllR~D~~Kl~Rl~~lL~ 106 (129)
++|.++.+|..-+++=|+.|..||.++|.
T Consensus 72 k~g~lkk~dA~~l~kID~~K~~rIydff~ 100 (108)
T 2cuj_A 72 KQGGLRLAQARALIKIDVNKTRKIYDFLI 100 (108)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHhcccHHHHHHHHHHHH
Confidence 46789999999999999999999999985
No 54
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=45.19 E-value=28 Score=22.31 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=19.4
Q ss_pred ccccccccccHHHHHHHH-hhhCC----CCCCcHHHHH
Q 033020 23 TSFKRKRGVFQKDLQHMM-YGFGD----DPNPLPETVA 55 (129)
Q Consensus 23 ~~~~~~k~~f~~EI~~mM-y~fGD----~~~P~~eTv~ 55 (129)
...++++..|..+-...| -.|-- .++|..+...
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~ 52 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQ 52 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHH
Confidence 345566778888754444 33433 6777766654
No 55
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=42.92 E-value=50 Score=22.56 Aligned_cols=71 Identities=11% Similarity=0.131 Sum_probs=46.9
Q ss_pred ccccccHHHHHHHH--hhhCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCChhH-HHHHhhcChhhHhH
Q 033020 27 RKRGVFQKDLQHMM--YGFGD-DPNPLPETVALVEDIVVEYVSDLAHKAQDLGS--KRGKLSVED-FLYLIRKDPPKLNR 100 (129)
Q Consensus 27 ~~k~~f~~EI~~mM--y~fGD-~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~--~Rgkis~eD-l~FllR~D~~Kl~R 100 (129)
..-++-..|+..++ +|-+| ...|.++.+..|=+++.. .++=. .+..|-+|+ |.-++..++.++--
T Consensus 11 ~~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~---------nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~ 81 (101)
T 1v32_A 11 EFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISK---------EGLLDPSNKKKVVCDKRLVLLFGTRTIFRMK 81 (101)
T ss_dssp SSSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHH---------HTCBCSSCTTEEECCSHHHHHTCCSEEETTH
T ss_pred eecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHh---------hcCcCcccCCeeeccHHHHHHHCCCcccHHH
Confidence 35588999999999 56666 568899988888777762 22211 122366665 44467777777666
Q ss_pred HHHHHH
Q 033020 101 CTELLS 106 (129)
Q Consensus 101 l~~lL~ 106 (129)
+-.+|.
T Consensus 82 m~klL~ 87 (101)
T 1v32_A 82 VYDLLE 87 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 56
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=41.56 E-value=76 Score=21.14 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=45.1
Q ss_pred HHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---CCChhHHHHHhhc
Q 033020 35 DLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRG---KLSVEDFLYLIRK 93 (129)
Q Consensus 35 EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rg---kis~eDl~FllR~ 93 (129)
-|+.+|=..-+ ..+.+..+.+|--+-..|+-+|+..|..+...+| .|.++.|.=+.|+
T Consensus 21 ~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 21 AIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp HHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 34555555555 4577899999999999999999999999987544 5888888777664
No 57
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=41.39 E-value=11 Score=26.78 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----ccCCC-ChhHHHHHhhc
Q 033020 52 ETVALVEDIVVEYVSDLAHKAQDLGS----KRGKL-SVEDFLYLIRK 93 (129)
Q Consensus 52 eTv~liEdIV~~~i~~l~~~A~~~A~----~Rgki-s~eDl~FllR~ 93 (129)
|+..-+.+-....|.+.+.+.++-=. .-|+| +.|||.||.|+
T Consensus 13 ~~~~~~k~~Fr~eis~~Vv~~L~pYRk~~Ck~GRITs~EDFK~LaRK 59 (112)
T 2a7o_A 13 ELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARK 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSTTCSSSBCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCccccCccccHHHHHHHHHH
Confidence 33344444444445555555443211 24665 59999999874
No 58
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=40.87 E-value=6.2 Score=27.46 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=18.0
Q ss_pred CChhHHHHHhhcChhhHhHHHHHHHHHHHHHHHHhccccC
Q 033020 82 LSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFEVD 121 (129)
Q Consensus 82 is~eDl~FllR~D~~Kl~Rl~~lL~~k~~ik~Ark~fd~~ 121 (129)
+++.||-.|+++-. =+..||.=+--|.+|+|.|+++
T Consensus 36 lsiqDIElLmKnTE----IWd~Ll~gkISIeEAKK~Fedn 71 (104)
T 4ayb_Q 36 LSIQDIELLMKNTE----IWDNLLNGKISVDEAKRLFEDN 71 (104)
T ss_dssp CCHHHHHHHHHHHH----HHHHHHHCCSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHhchH----HHHHHHcCcccHHHHHHHHHHH
Confidence 55556555555432 2334444444455555555544
No 59
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.94 E-value=15 Score=31.62 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcC---hhhHhHHHHHHHH
Q 033020 58 EDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKD---PPKLNRCTELLSM 107 (129)
Q Consensus 58 EdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D---~~Kl~Rl~~lL~~ 107 (129)
+.+.--.|..+|.+|.-.|.++++ |+.+||.-++.+= .+|..-...|+.|
T Consensus 412 ~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~ 466 (467)
T 4b4t_H 412 PNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQY 466 (467)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHCC----------
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcccchhHHHHHhh
Confidence 334445788999999888866554 8999999887642 2344444455554
No 60
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.48 E-value=38 Score=22.00 Aligned_cols=16 Identities=31% Similarity=0.841 Sum_probs=10.9
Q ss_pred cccHHHHHHHH-hhhCC
Q 033020 30 GVFQKDLQHMM-YGFGD 45 (129)
Q Consensus 30 ~~f~~EI~~mM-y~fGD 45 (129)
..|...|++|+ +||-|
T Consensus 27 ~~ye~qi~qL~eMGF~d 43 (74)
T 1vej_A 27 GRYQQELEELKALGFAN 43 (74)
T ss_dssp TTSHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 45677787776 57755
No 61
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=34.20 E-value=82 Score=21.24 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=16.0
Q ss_pred ccCCCChhHHHHHhhcChh
Q 033020 78 KRGKLSVEDFLYLIRKDPP 96 (129)
Q Consensus 78 ~Rgkis~eDl~FllR~D~~ 96 (129)
..|+|+.++|+-+++++|.
T Consensus 156 ~dG~I~~~EF~~~~~~~~~ 174 (183)
T 1dgu_A 156 RDGTINLSEFQHVISRSPD 174 (183)
T ss_dssp SSSEEEHHHHHHHHCSSCH
T ss_pred CCCeEcHHHHHHHHHhChH
Confidence 3578999999999998864
No 62
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=34.19 E-value=39 Score=22.47 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=26.6
Q ss_pred ccCCCChhHHHHHhhcChhhHhHHHHHHHH
Q 033020 78 KRGKLSVEDFLYLIRKDPPKLNRCTELLSM 107 (129)
Q Consensus 78 ~Rgkis~eDl~FllR~D~~Kl~Rl~~lL~~ 107 (129)
.+|.++..|..-+++=|+.|.+||.+++.-
T Consensus 54 ~~g~l~k~da~~~~kiD~~K~~~iydf~~~ 83 (90)
T 2aqe_A 54 KQGGLRLAQARALIKIDVNKTRKIYDFLIR 83 (90)
T ss_dssp HHSCCCHHHHHTTSSSSSHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHcccHHHHHHHHHHHHH
Confidence 357799999999999999999999999853
No 63
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=33.67 E-value=53 Score=22.34 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=34.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------cCCCChhHHH
Q 033020 44 GDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSK---------RGKLSVEDFL 88 (129)
Q Consensus 44 GD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~---------Rgkis~eDl~ 88 (129)
++...-..+++.++.+++--|+.+-+.+|.+-... .|-+.++||-
T Consensus 17 ~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLE 70 (88)
T 3v9r_B 17 GNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLE 70 (88)
T ss_dssp SSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHH
T ss_pred CCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHH
Confidence 66677889999999999999999999999865432 1237777763
No 64
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=32.68 E-value=96 Score=19.69 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=27.6
Q ss_pred hhhCCCCCCcHHHHHHHHHHHHHH---------HHHHHHHHHHhhhccCCCC
Q 033020 41 YGFGDDPNPLPETVALVEDIVVEY---------VSDLAHKAQDLGSKRGKLS 83 (129)
Q Consensus 41 y~fGD~~~P~~eTv~liEdIV~~~---------i~~l~~~A~~~A~~Rgkis 83 (129)
+||| .+.+-..+.|.+.+.+| =.+++..|++.|-..|+.+
T Consensus 11 ~g~g---~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~ 59 (83)
T 2i5u_A 11 NGFG---LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARN 59 (83)
T ss_dssp TTSC---SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred hCCC---CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCC
Confidence 3777 34455566667777766 6789999998886556654
No 65
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=32.02 E-value=31 Score=20.84 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.5
Q ss_pred hhHHHHHhhcChhhHhHHHH
Q 033020 84 VEDFLYLIRKDPPKLNRCTE 103 (129)
Q Consensus 84 ~eDl~FllR~D~~Kl~Rl~~ 103 (129)
.+-|+|+|++|+.-++.|.+
T Consensus 15 ~qal~hLiknD~~Fl~~iHe 34 (46)
T 2wx4_A 15 VQAFTYLIQNDKEFANKLHK 34 (46)
T ss_dssp HHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH
Confidence 46799999999999998876
No 66
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=28.67 E-value=60 Score=20.04 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=18.0
Q ss_pred ccccccccHHHHH-HHHhhhCCCCCCcHHHHH
Q 033020 25 FKRKRGVFQKDLQ-HMMYGFGDDPNPLPETVA 55 (129)
Q Consensus 25 ~~~~k~~f~~EI~-~mMy~fGD~~~P~~eTv~ 55 (129)
.++++..|..+-. .|--.|--.++|..+...
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~ 48 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLLDSNPTRKMLD 48 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3456667777643 343445556777776654
No 67
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.49 E-value=44 Score=28.00 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhc
Q 033020 59 DIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRK 93 (129)
Q Consensus 59 dIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~ 93 (129)
.+.--.|..+|.+|.-.|-++++ |+.+||.-++++
T Consensus 352 G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 352 GCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 34445788899999888866664 899999988864
No 68
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=27.81 E-value=42 Score=20.70 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=17.7
Q ss_pred hhHHHHHhhcChhhHhHHHHH
Q 033020 84 VEDFLYLIRKDPPKLNRCTEL 104 (129)
Q Consensus 84 ~eDl~FllR~D~~Kl~Rl~~l 104 (129)
.+-|+++|++|+.-++.|.+-
T Consensus 17 ~qaLihLIqnD~~Fl~~IHeA 37 (51)
T 2wx3_A 17 QDTLIHLIKNDSSFLSTLHEV 37 (51)
T ss_dssp HHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHH
Confidence 367899999999999998763
No 69
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=27.72 E-value=1.2e+02 Score=19.97 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=25.3
Q ss_pred cCC-CChhHHHHHhhcChhhHhHHHHHHH
Q 033020 79 RGK-LSVEDFLYLIRKDPPKLNRCTELLS 106 (129)
Q Consensus 79 Rgk-is~eDl~FllR~D~~Kl~Rl~~lL~ 106 (129)
+|. ++.+|..-+++=|+.|.+||.+++.
T Consensus 55 ~g~~lkk~da~~~~kiD~~K~~~iydf~~ 83 (88)
T 2elj_A 55 TGGNLSKSACRELLNIDPIKANRIYDFFQ 83 (88)
T ss_dssp HSSCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHcccHHHHHHHHHHHH
Confidence 455 9999999999999999999999985
No 70
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=27.43 E-value=2.2e+02 Score=22.16 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHhh------hccCCCChhHHHHHhhcChhhHhHHHHHHHHHH
Q 033020 49 PLPETVALVEDIVVEYVSD-LAHKAQDLG------SKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQE 109 (129)
Q Consensus 49 P~~eTv~liEdIV~~~i~~-l~~~A~~~A------~~Rgkis~eDl~FllR~D~~Kl~Rl~~lL~~k~ 109 (129)
|..++..++.+++..|+.- .+..|.++. ...|.+++++|.=.+.=|+..+.|+-.+|..-.
T Consensus 4 ~e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~g 71 (353)
T 4a6d_A 4 SEDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLK 71 (353)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCC
Confidence 5567888899999888653 445555443 223569999999999999999999888876543
No 71
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=27.14 E-value=1.2e+02 Score=24.15 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHh---hhccCCCChhHHHH-----HhhcChhhHh-----HHHHHHHHHHHHHHHHhcc
Q 033020 61 VVEYVSDLAHKAQDL---GSKRGKLSVEDFLY-----LIRKDPPKLN-----RCTELLSMQEELKQARKAF 118 (129)
Q Consensus 61 V~~~i~~l~~~A~~~---A~~Rgkis~eDl~F-----llR~D~~Kl~-----Rl~~lL~~k~~ik~Ark~f 118 (129)
+.+-+-+++-+...+ |...|.++++|++- ++|+.|.=++ -..+.+..++.||.+.|.-
T Consensus 57 l~eELGDvLlqVvf~a~ia~e~g~F~~~dV~~~~~~KlirRhPhvF~~~~~~~~~ev~~~We~iK~~Ek~~ 127 (265)
T 3cra_A 57 LRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQ 127 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHTC----------------CCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 556666666666544 44578899999985 5677774333 3456677778899888753
No 72
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=27.04 E-value=40 Score=22.01 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=16.5
Q ss_pred CCCCCCCccccccccccHHH-HHHHHhhhCCCCCCcHHHH
Q 033020 16 SSQPCETTSFKRKRGVFQKD-LQHMMYGFGDDPNPLPETV 54 (129)
Q Consensus 16 ~~~~~~~~~~~~~k~~f~~E-I~~mMy~fGD~~~P~~eTv 54 (129)
+++|......++++..|..+ +..|--.|--.++|..+..
T Consensus 16 ~~~p~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r 55 (96)
T 3nar_A 16 FQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEY 55 (96)
T ss_dssp -----------CCSSSSCHHHHHHHHHHHHHCSSCCHHHH
T ss_pred CCCCCCCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 33333333344566677665 4444445555677766554
No 73
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=26.74 E-value=1.4e+02 Score=19.64 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=20.1
Q ss_pred ccCCCChhHHHHHhhcChhhHhHHHHHHHHHHHHHHHHhccccCh
Q 033020 78 KRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFEVDE 122 (129)
Q Consensus 78 ~Rgkis~eDl~FllR~D~~Kl~Rl~~lL~~k~~ik~Ark~fd~~~ 122 (129)
..|+|+.++|+-++++. +.+.++=+.||.|.
T Consensus 117 ~dg~i~~~eF~~~~~~~--------------~~~~~~F~~~D~d~ 147 (165)
T 1k94_A 117 KNGRIFFDDYVACCVKL--------------RALTDFFRKRDHLQ 147 (165)
T ss_dssp BTTBCBHHHHHHHHHHH--------------HHHHHHHHTTCTTC
T ss_pred CCCeEcHHHHHHHHHHH--------------HHHHHHHHHhCCCC
Confidence 46789999988776542 34555555666654
No 74
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=26.18 E-value=86 Score=24.49 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=50.6
Q ss_pred cccHHHHHHHHhhhCCCCCCcHHH----------HHHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHhhcChhhHh
Q 033020 30 GVFQKDLQHMMYGFGDDPNPLPET----------VALVEDIVVEYVSDLAHKAQDLGSKRGKLSVEDFLYLIRKDPPKLN 99 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~eT----------v~liEdIV~~~i~~l~~~A~~~A~~Rgkis~eDl~FllR~D~~Kl~ 99 (129)
..|+...++|+...|=. |+.-. -++.-++ -.+|+++|..... ..-|-|+++|+.-.+.+.+.+..
T Consensus 38 p~fR~~F~~mc~siGVD--Plas~kg~ws~~lG~gdfy~eL-avqIvEvC~~tr~--~nGGli~L~el~~~~~r~Rg~~~ 112 (234)
T 3cuq_A 38 PEFRVQFQDMCATIGVD--PLASGKGFWSEMLGVGDFYYEL-GVQIIEVCLALKH--RNGGLITLEELHQQVLKGRGKFA 112 (234)
T ss_dssp HHHHHHHHHHHHHHTCC--TTSCTTSHHHHHHCHHHHHHHH-HHHHHHHHHHHHH--HHSSEEEHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHcCCC--cccCCcchhhhhcCcchHHHHH-HHHHHHHHHHHHH--hcCCeeEHHHHHHHHHHhcCCcc
Confidence 46899999999999965 65533 1222222 3356666665443 22345999999999887665532
Q ss_pred HHHHHHHHHHHHHHHHh
Q 033020 100 RCTELLSMQEELKQARK 116 (129)
Q Consensus 100 Rl~~lL~~k~~ik~Ark 116 (129)
+.++-.|.++.+++
T Consensus 113 ---~~IS~dDi~rAik~ 126 (234)
T 3cuq_A 113 ---QDVSQDDLIRAIKK 126 (234)
T ss_dssp ---SSCCHHHHHHHHHH
T ss_pred ---CccCHHHHHHHHHH
Confidence 46676776666654
No 75
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=25.61 E-value=64 Score=22.47 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=8.7
Q ss_pred cCCCChhHHHHHhh
Q 033020 79 RGKLSVEDFLYLIR 92 (129)
Q Consensus 79 Rgkis~eDl~FllR 92 (129)
.|.|+.++|+-++.
T Consensus 103 ~g~i~~~eF~~~~~ 116 (196)
T 3dtp_E 103 PGPINFTMFLTIFG 116 (196)
T ss_dssp SSCCBHHHHHHHHH
T ss_pred cCCCcHHHHHHHHH
Confidence 45666666666654
No 76
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.47 E-value=55 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhc
Q 033020 60 IVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRK 93 (129)
Q Consensus 60 IV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~ 93 (129)
+.--.|..+|.+|.-.|-++++ |+.+||.-++++
T Consensus 386 ~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 386 FNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 3445788999999888866654 999999998864
No 77
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.69 E-value=58 Score=27.69 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhh
Q 033020 58 EDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIR 92 (129)
Q Consensus 58 EdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR 92 (129)
+.+.--.|..+|.+|.-.|-++++ |+.+||.-+++
T Consensus 385 ~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 385 DDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 334445788899999888866664 88999988775
No 78
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.46 E-value=53 Score=27.56 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhcCh
Q 033020 57 VEDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKDP 95 (129)
Q Consensus 57 iEdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D~ 95 (129)
-+.+.--.|..+|.+|.-.|.++|+ |+.+||.-++.+=.
T Consensus 383 t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 383 TDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 3444455789999999988876664 99999999887643
No 79
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=24.41 E-value=1.3e+02 Score=18.77 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=19.2
Q ss_pred ccccccccHHH-HHHHHhhhCCCCCCcHHHHH
Q 033020 25 FKRKRGVFQKD-LQHMMYGFGDDPNPLPETVA 55 (129)
Q Consensus 25 ~~~~k~~f~~E-I~~mMy~fGD~~~P~~eTv~ 55 (129)
.++++..|..+ +..|--.|--.++|..+...
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~ 53 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQ 53 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHH
Confidence 34556677765 34555666667778776643
No 80
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=24.19 E-value=1.1e+02 Score=21.90 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=16.1
Q ss_pred ccCCCChhHHHHHhhcChh
Q 033020 78 KRGKLSVEDFLYLIRKDPP 96 (129)
Q Consensus 78 ~Rgkis~eDl~FllR~D~~ 96 (129)
..|+|+.++|+-+++++|.
T Consensus 187 ~dG~Is~~EF~~~~~~~p~ 205 (214)
T 2l4h_A 187 RDGTINLSEFQHVISRSPD 205 (214)
T ss_dssp CCSSBCSHHHHHHHHTCHH
T ss_pred CCCcCCHHHHHHHHHhChH
Confidence 3578999999999998874
No 81
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=23.70 E-value=90 Score=24.32 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=48.0
Q ss_pred cccHHHHHHHHhhhCCCCCCcH-HH--------HHHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHhhcChhhHhH
Q 033020 30 GVFQKDLQHMMYGFGDDPNPLP-ET--------VALVEDIVVEYVSDLAHKAQDLGSKRGKLSVEDFLYLIRKDPPKLNR 100 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~-eT--------v~liEdIV~~~i~~l~~~A~~~A~~Rgkis~eDl~FllR~D~~Kl~R 100 (129)
..|+...++|+...|=. |+. .. -++.-++ -.+|+++|..-.. ..-|-|+++|+.-.+.+.
T Consensus 58 p~fR~~F~~mc~siGVD--PLa~s~kg~~~lg~gdfy~eL-avqIvEvC~~tr~--~nGGli~l~el~~~~~r~------ 126 (233)
T 1u5t_A 58 PEFRSKFMHMCSSIGID--PLSLFDRDKHLFTVNDFYYEV-CLKVIEICRQTKD--MNGGVISFQELEKVHFRK------ 126 (233)
T ss_dssp HHHHHHHHHHHHHHTCC--HHHHTTSSGGGTTHHHHHHHH-HHHHHHHHHHHTT--TSSSCEEHHHHHHTTTTT------
T ss_pred HHHHHHHHHHHHHcCCC--CCccCCccccccCcchHHHHH-HHHHHHHHHHHHH--hcCCeeEHHHHHHHHHhh------
Confidence 56999999999999965 766 11 2232222 2356666655442 123459999999988776
Q ss_pred HHHHHHHHHHHHHHHh
Q 033020 101 CTELLSMQEELKQARK 116 (129)
Q Consensus 101 l~~lL~~k~~ik~Ark 116 (129)
+.++..|.++..++
T Consensus 127 --~~IS~dDi~rAik~ 140 (233)
T 1u5t_A 127 --LNVGLDDLEKSIDM 140 (233)
T ss_dssp --TTCCHHHHHHHHHH
T ss_pred --cCCCHHHHHHHHHH
Confidence 56666776666654
No 82
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=22.35 E-value=80 Score=21.55 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhccCC--CChhHHHHHhhcChh
Q 033020 63 EYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRKDPP 96 (129)
Q Consensus 63 ~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~D~~ 96 (129)
..+..++..|...|...|. |++|.|+..|=.++.
T Consensus 84 ~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~ 119 (145)
T 3fes_A 84 PRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGE 119 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCC
Confidence 3456667778888876664 999999999876653
No 83
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=21.51 E-value=38 Score=29.19 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=26.4
Q ss_pred cccccHHHHHHHHhhhCCCC---CCcHHHHHHHHHHH
Q 033020 28 KRGVFQKDLQHMMYGFGDDP---NPLPETVALVEDIV 61 (129)
Q Consensus 28 ~k~~f~~EI~~mMy~fGD~~---~P~~eTv~liEdIV 61 (129)
-++....-+.-++||.||.- ||-.+++.-+..++
T Consensus 171 ~~gI~as~ldGL~yG~GDAVIGiNPa~Ds~~~~~~ll 207 (455)
T 2qez_A 171 PDGILASLMEGLTYGIGDAVIGLNPVDDSTDSVVRLL 207 (455)
T ss_dssp HHHHHHHHHHHHHTTCCSSEEEECCSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCeEEecCCCCCCHHHHHHHH
Confidence 56888889999999999975 88888666554443
No 84
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=21.51 E-value=2.7e+02 Score=21.43 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=14.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Q 033020 49 PLPETVALVEDIVVEYVSDLAHKAQ 73 (129)
Q Consensus 49 P~~eTv~liEdIV~~~i~~l~~~A~ 73 (129)
-.++|...|++=|..-|.+...+|.
T Consensus 143 ~Se~ta~~iD~Ev~~il~~ay~~a~ 167 (238)
T 2di4_A 143 TSPDLLREIDEEVKRIITEQYEKAK 167 (238)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777666554444444444
No 85
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.00 E-value=87 Score=22.77 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhhhccC--CCChhHHHHHhh
Q 033020 60 IVVEYVSDLAHKAQDLGSKRG--KLSVEDFLYLIR 92 (129)
Q Consensus 60 IV~~~i~~l~~~A~~~A~~Rg--kis~eDl~FllR 92 (129)
+....|..+|..|...|..++ .|+.+||.-+++
T Consensus 216 ~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 216 FSGADLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 345578888999988887665 499999887765
No 86
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=20.90 E-value=1.4e+02 Score=17.48 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=30.7
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHhhcChh
Q 033020 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSVEDFLYLIRKDPP 96 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgkis~eDl~FllR~D~~ 96 (129)
+=..|+..+|-..| . +..+- +..++..+ . ....|.|+.++|+-++...+.
T Consensus 28 i~~~el~~~l~~~g--~-~~~~~-----------~~~~~~~~-D-~~~dg~i~~~eF~~~~~~~~~ 77 (86)
T 2opo_A 28 ISSSELGDALKTLG--S-VTPDE-----------VRRMMAEI-D-TDGDGFISFDEFTDFARANRG 77 (86)
T ss_dssp EEHHHHHHHHHTTT--T-CCHHH-----------HHHHHHHH-C-TTCSSEECHHHHHHHHHHCTT
T ss_pred cCHHHHHHHHHHcC--C-CCHHH-----------HHHHHHHh-C-CCCCCcCcHHHHHHHHHHCcc
Confidence 44678999998888 2 22221 12222222 1 123578999999998887764
No 87
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
Probab=20.34 E-value=38 Score=29.20 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=26.3
Q ss_pred cccccHHHHHHHHhhhCCCC---CCcHHHHHHHHHHH
Q 033020 28 KRGVFQKDLQHMMYGFGDDP---NPLPETVALVEDIV 61 (129)
Q Consensus 28 ~k~~f~~EI~~mMy~fGD~~---~P~~eTv~liEdIV 61 (129)
-++....-+.-++||.||.- ||-.+++.-+..++
T Consensus 170 ~~gI~as~ldGL~yG~GDAVIGiNPa~Ds~~~~~~ll 206 (453)
T 3abq_A 170 VQSIAAQIYEGLSFGVGDAVIGVNPVTDDVENLSRVL 206 (453)
T ss_dssp HHHHHHHHHHHHTTTCCSSEEEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCeEEecCCCCCCHHHHHHHH
Confidence 56888889999999999975 88888666554443
No 88
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=20.17 E-value=1.1e+02 Score=19.92 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=37.8
Q ss_pred cccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChhHHHHHhhcC
Q 033020 30 GVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSVEDFLYLIRKD 94 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~eTv~liEdIV~~~i~~l~~~A~~~A~~Rgkis~eDl~FllR~D 94 (129)
+.+.+=|..+|=-+| ..+|.+|.+.+|---+.+.+..|+.+-..+|..|--.-=+|-.|.+=.|
T Consensus 6 ~~Lqkri~~I~~k~g-l~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R~~~~K~d~ry~~tsD 69 (75)
T 1h3o_A 6 APLQRRILEIGKKHG-ITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFSYKDDDRYEQASD 69 (75)
T ss_dssp HHHHHHHHHHHHTTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHhcC-CCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCeEeecc
Confidence 356677888886655 5889999999999999999999999999999876543223334443333
No 89
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=20.17 E-value=86 Score=23.01 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC--CChhHHHHHhhc
Q 033020 58 EDIVVEYVSDLAHKAQDLGSKRGK--LSVEDFLYLIRK 93 (129)
Q Consensus 58 EdIV~~~i~~l~~~A~~~A~~Rgk--is~eDl~FllR~ 93 (129)
+.+....|..+|..|...|..++. |+.+||.-+++.
T Consensus 220 ~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 220 EGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 334455788899999988876653 999999887764
Done!