Citrus Sinensis ID: 033020


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
MSNPSAGQSSKSKAGSSQPCETTSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELKQARKAFEVDEEKLASIE
ccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccc
******************************VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSVEDFLYLIRKDPPKLNRCTELLSMQEELK*****************
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MSNPSAGQSSKSKAGSSQPCETTSFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVSDLAHKAQDLGSKRGKLSVEDFLYLIRKDPPKLNRCTExxxxxxxxxxxxxxxxxxxxxLASIE

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Transcription initiation factor TFIID subunit 13 TFIID beta-specific TAFII.probableP61216
Transcription initiation factor TFIID subunit 13 TFIID beta-specific TAFII.probableQ54CN8
Transcription initiation factor TFIID subunit 13 TFIID beta-specific TAFII.probableQ5R9W6

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1BH9, chain A
Confidence level:confident
Coverage over the Query: 31-75
View the alignment between query and template
View the model in PyMOL
Template: 1N1J, chain A
Confidence level:probable
Coverage over the Query: 33-113
View the alignment between query and template
View the model in PyMOL