Query 033021
Match_columns 129
No_of_seqs 174 out of 1024
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 14:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x1o_A Nicotinate-nucleotide p 100.0 5.1E-45 1.8E-49 293.2 13.9 125 5-129 27-153 (286)
2 3l0g_A Nicotinate-nucleotide p 100.0 7.2E-45 2.5E-49 293.7 12.5 123 6-129 41-165 (300)
3 3tqv_A Nicotinate-nucleotide p 100.0 4.1E-44 1.4E-48 288.1 15.3 123 5-129 32-156 (287)
4 1o4u_A Type II quinolic acid p 100.0 4.8E-43 1.6E-47 281.7 14.7 121 5-129 29-150 (285)
5 3gnn_A Nicotinate-nucleotide p 100.0 4.1E-43 1.4E-47 283.5 13.3 124 5-129 42-167 (298)
6 3paj_A Nicotinate-nucleotide p 100.0 8.9E-43 3.1E-47 283.8 14.9 123 6-129 65-189 (320)
7 1qpo_A Quinolinate acid phosph 100.0 3.9E-42 1.3E-46 276.2 13.7 124 5-129 23-152 (284)
8 2b7n_A Probable nicotinate-nuc 100.0 1.8E-39 6.1E-44 258.8 14.8 122 5-129 16-139 (273)
9 1qap_A Quinolinic acid phospho 100.0 7.2E-39 2.5E-43 258.4 13.8 121 8-129 43-166 (296)
10 2jbm_A Nicotinate-nucleotide p 100.0 8.8E-39 3E-43 258.0 14.0 121 5-129 30-154 (299)
11 3c2e_A Nicotinate-nucleotide p 100.0 4.1E-38 1.4E-42 253.6 13.0 121 5-129 26-156 (294)
12 2i1o_A Nicotinate phosphoribos 99.9 1.3E-27 4.4E-32 199.2 9.8 118 8-129 29-161 (398)
13 2i14_A Nicotinate-nucleotide p 99.9 9.1E-28 3.1E-32 199.9 8.7 118 8-129 29-157 (395)
14 2f7f_A Nicotinate phosphoribos 99.8 2E-20 6.9E-25 159.5 11.6 114 15-129 29-179 (494)
15 3os4_A Naprtase, nicotinate ph 98.4 3.5E-07 1.2E-11 76.4 5.9 103 18-120 32-182 (407)
16 4hl7_A Naprtase, nicotinate ph 98.1 1.7E-06 5.7E-11 73.1 3.2 103 17-119 35-191 (446)
17 1yir_A Naprtase 2, nicotinate 98.0 2.3E-05 7.8E-10 65.3 8.7 95 18-120 36-186 (408)
18 3dhf_A Nicotinamide phosphorib 97.8 4.1E-05 1.4E-09 65.2 7.8 54 50-105 114-171 (484)
19 1vlp_A Naprtase, nicotinate ph 97.7 5.7E-05 2E-09 63.5 6.0 98 18-119 41-196 (441)
20 2im5_A Nicotinate phosphoribos 97.5 0.00042 1.4E-08 57.5 9.3 96 15-120 25-173 (394)
21 1ybe_A Naprtase, nicotinate ph 97.3 0.001 3.5E-08 56.0 9.0 95 18-120 51-209 (449)
22 3crk_C Dihydrolipoyllysine-res 91.1 0.19 6.3E-06 32.3 3.3 25 50-74 21-45 (87)
23 1z6h_A Biotin/lipoyl attachmen 90.8 0.22 7.6E-06 30.2 3.3 23 52-74 11-33 (72)
24 1iyu_A E2P, dihydrolipoamide a 90.4 0.21 7.1E-06 31.2 3.0 23 52-74 16-38 (79)
25 2dnc_A Pyruvate dehydrogenase 90.4 0.22 7.5E-06 33.0 3.2 25 50-74 23-47 (98)
26 2d5d_A Methylmalonyl-COA decar 89.7 0.31 1E-05 29.6 3.3 22 53-74 18-39 (74)
27 1qjo_A Dihydrolipoamide acetyl 89.5 0.27 9.1E-06 30.7 2.9 25 50-74 16-40 (80)
28 2dne_A Dihydrolipoyllysine-res 88.8 0.27 9.2E-06 33.2 2.7 25 50-74 23-47 (108)
29 2dsj_A Pyrimidine-nucleoside ( 88.8 2.8 9.7E-05 34.9 9.4 58 18-76 324-394 (423)
30 1k8m_A E2 component of branche 88.5 0.25 8.4E-06 32.3 2.2 25 50-74 20-44 (93)
31 1ghj_A E2, E2, the dihydrolipo 88.2 0.23 7.8E-06 31.0 1.9 24 51-74 18-41 (79)
32 1dcz_A Transcarboxylase 1.3S s 87.7 0.62 2.1E-05 28.6 3.7 22 53-74 21-42 (77)
33 2dn8_A Acetyl-COA carboxylase 87.7 0.37 1.3E-05 31.7 2.8 21 53-73 30-50 (100)
34 1gjx_A Pyruvate dehydrogenase; 87.2 0.31 1.1E-05 30.5 2.0 24 51-74 18-41 (81)
35 2kcc_A Acetyl-COA carboxylase 87.2 0.54 1.8E-05 29.9 3.3 24 50-73 15-38 (84)
36 1bdo_A Acetyl-COA carboxylase; 87.1 0.29 9.9E-06 30.5 1.9 22 53-74 24-45 (80)
37 1brw_A PYNP, protein (pyrimidi 86.9 2.6 8.9E-05 35.1 8.1 59 18-76 331-402 (433)
38 1y8o_B Dihydrolipoyllysine-res 86.9 0.52 1.8E-05 33.0 3.3 25 50-74 43-67 (128)
39 3h5q_A PYNP, pyrimidine-nucleo 86.4 3.7 0.00013 34.3 8.8 63 18-80 334-409 (436)
40 2l5t_A Lipoamide acyltransfera 86.2 0.24 8.3E-06 30.7 1.1 25 50-74 17-41 (77)
41 2ejm_A Methylcrotonoyl-COA car 85.7 0.57 1.9E-05 30.7 2.9 23 52-74 26-48 (99)
42 2k32_A A; NMR {Campylobacter j 85.3 0.68 2.3E-05 30.8 3.1 22 53-74 14-35 (116)
43 1uou_A Thymidine phosphorylase 84.4 5.2 0.00018 33.8 8.8 60 18-77 368-438 (474)
44 2tpt_A Thymidine phosphorylase 83.8 3.7 0.00013 34.3 7.6 62 18-79 336-410 (440)
45 2jku_A Propionyl-COA carboxyla 83.0 0.69 2.4E-05 30.1 2.3 24 51-74 36-59 (94)
46 1pmr_A Dihydrolipoyl succinylt 79.8 0.17 5.8E-06 31.9 -1.6 24 51-74 19-42 (80)
47 3our_B EIIA, phosphotransferas 71.9 2.8 9.5E-05 31.3 3.0 22 51-72 117-138 (183)
48 1zy8_K Pyruvate dehydrogenase 71.8 0.79 2.7E-05 35.0 0.0 24 50-73 19-42 (229)
49 2k7v_A Dihydrolipoyllysine-res 71.6 0.41 1.4E-05 30.4 -1.5 23 52-74 14-36 (85)
50 3fpp_A Macrolide-specific effl 68.4 2.9 9.9E-05 32.3 2.6 22 53-74 44-65 (341)
51 1bdo_A Acetyl-COA carboxylase; 68.4 4 0.00014 25.1 2.8 20 53-72 61-80 (80)
52 2gpr_A Glucose-permease IIA co 68.2 3.9 0.00013 29.4 3.0 22 51-72 90-111 (154)
53 2f1m_A Acriflavine resistance 67.5 1.9 6.6E-05 32.4 1.4 23 53-75 35-57 (277)
54 2l5t_A Lipoamide acyltransfera 66.6 5.2 0.00018 24.3 3.1 20 53-72 57-76 (77)
55 3dva_I Dihydrolipoyllysine-res 66.2 1.2 4.2E-05 36.8 0.0 22 51-72 19-40 (428)
56 1f3z_A EIIA-GLC, glucose-speci 66.0 4.5 0.00015 29.3 3.0 22 51-72 95-116 (161)
57 3lnn_A Membrane fusion protein 65.7 3.5 0.00012 32.1 2.6 22 53-74 70-91 (359)
58 3n6r_A Propionyl-COA carboxyla 63.4 5 0.00017 34.9 3.3 25 49-73 621-645 (681)
59 1j5k_A Heterogeneous nuclear r 62.8 26 0.00089 22.1 7.4 70 20-94 13-86 (89)
60 1iyu_A E2P, dihydrolipoamide a 62.6 10 0.00035 23.1 3.9 23 52-74 53-75 (79)
61 1ax3_A Iiaglc, glucose permeas 60.8 4.3 0.00015 29.4 2.1 22 51-72 95-116 (162)
62 1zzk_A Heterogeneous nuclear r 59.8 28 0.00096 21.5 6.7 59 31-94 19-79 (82)
63 1vf7_A Multidrug resistance pr 57.8 4.3 0.00015 32.1 1.8 23 53-75 56-78 (369)
64 4dk0_A Putative MACA; alpha-ha 55.9 3.1 0.00011 32.4 0.6 23 53-75 45-67 (369)
65 3krm_A Insulin-like growth fac 55.1 48 0.0016 22.7 6.9 68 22-92 86-157 (163)
66 2k7v_A Dihydrolipoyllysine-res 54.5 9.8 0.00033 23.7 2.8 22 53-74 52-73 (85)
67 1k8m_A E2 component of branche 54.1 11 0.00037 24.2 3.0 24 52-75 59-82 (93)
68 2auk_A DNA-directed RNA polyme 53.2 8.5 0.00029 28.3 2.7 20 53-72 167-186 (190)
69 1zko_A Glycine cleavage system 53.0 31 0.0011 24.0 5.5 41 29-73 29-70 (136)
70 3ne5_B Cation efflux system pr 53.0 9.1 0.00031 30.9 3.0 21 54-74 135-156 (413)
71 3crk_C Dihydrolipoyllysine-res 52.5 9.7 0.00033 23.9 2.5 23 53-75 61-84 (87)
72 1x4m_A FAR upstream element bi 52.3 42 0.0015 21.3 6.1 51 37-90 35-85 (94)
73 2hh3_A KH-type splicing regula 51.6 49 0.0017 21.8 7.0 50 37-91 31-80 (106)
74 3hbl_A Pyruvate carboxylase; T 50.9 10 0.00035 35.1 3.3 24 50-73 1087-1110(1150)
75 2auk_A DNA-directed RNA polyme 50.7 8.9 0.00031 28.2 2.4 19 53-71 63-81 (190)
76 3va7_A KLLA0E08119P; carboxyla 47.7 12 0.0004 35.1 3.2 24 51-74 1178-1201(1236)
77 2xha_A NUSG, transcription ant 46.9 11 0.00038 28.2 2.4 19 53-71 22-40 (193)
78 3u9t_A MCC alpha, methylcroton 45.6 4.4 0.00015 35.2 0.0 25 49-73 611-635 (675)
79 3bg3_A Pyruvate carboxylase, m 42.0 11 0.00039 33.2 2.1 25 49-73 658-682 (718)
80 1ffk_F Ribosomal protein L10E; 41.2 28 0.00095 25.2 3.7 17 61-77 114-130 (157)
81 2dne_A Dihydrolipoyllysine-res 41.1 23 0.00078 23.4 3.1 25 53-77 63-88 (108)
82 2hh2_A KH-type splicing regula 40.3 75 0.0026 20.7 5.7 51 37-90 27-78 (107)
83 3cdx_A Succinylglutamatedesucc 38.5 22 0.00077 28.1 3.2 22 52-73 278-299 (354)
84 1y8o_B Dihydrolipoyllysine-res 37.8 30 0.001 23.7 3.4 27 52-78 82-109 (128)
85 1zw2_B Talin, metavinculin; co 35.9 29 0.00098 17.8 2.2 19 89-107 2-20 (26)
86 2qf7_A Pyruvate carboxylase pr 34.7 22 0.00074 33.0 2.8 24 50-73 1105-1128(1165)
87 3a7l_A H-protein, glycine clea 34.6 49 0.0017 22.6 4.1 40 32-74 24-63 (128)
88 3r8s_M 50S ribosomal protein L 34.5 37 0.0013 23.8 3.5 14 61-74 95-108 (136)
89 3na6_A Succinylglutamate desuc 34.1 29 0.00099 27.3 3.1 23 52-74 268-290 (331)
90 1onl_A Glycine cleavage system 33.8 52 0.0018 22.5 4.1 42 30-74 21-62 (128)
91 2qnd_A FMR1 protein; KH domain 33.4 1.1E+02 0.0039 20.8 6.4 26 67-92 118-143 (144)
92 1hpc_A H protein of the glycin 33.3 53 0.0018 22.6 4.1 42 29-73 20-61 (131)
93 3ne5_B Cation efflux system pr 33.3 31 0.0011 27.6 3.3 36 21-74 206-241 (413)
94 3gku_A Probable RNA-binding pr 32.8 98 0.0034 23.4 5.8 74 18-95 49-123 (225)
95 2xhc_A Transcription antitermi 32.7 24 0.00081 28.5 2.4 18 53-70 62-79 (352)
96 2opv_A KHSRP protein; KH domai 31.0 95 0.0032 19.1 6.8 51 36-89 33-83 (85)
97 3fmc_A Putative succinylglutam 30.6 34 0.0012 27.4 3.0 22 52-73 301-322 (368)
98 3cim_A Carbon dioxide-concentr 30.3 1E+02 0.0036 20.2 5.0 54 31-90 12-65 (99)
99 2jvz_A KH type-splicing, FAR u 29.9 1.3E+02 0.0044 20.3 6.2 51 37-90 22-72 (164)
100 3bbo_O Ribosomal protein L16; 28.8 26 0.0009 24.5 1.8 15 61-75 96-110 (135)
101 3vot_A L-amino acid ligase, BL 27.8 1.1E+02 0.0036 24.0 5.5 66 23-90 339-409 (425)
102 2jvz_A KH type-splicing, FAR u 27.4 1.4E+02 0.0049 20.0 6.8 50 37-91 111-160 (164)
103 2ftc_O L27MT, MRP-L27, mitocho 27.1 32 0.0011 21.6 1.8 21 54-74 23-43 (69)
104 2ftc_I Mitochondrial ribosomal 26.7 77 0.0026 21.5 3.9 14 61-74 83-96 (118)
105 2lmc_B DNA-directed RNA polyme 26.4 11 0.00038 24.5 -0.5 15 55-69 68-82 (84)
106 3it5_A Protease LASA; metallop 25.7 35 0.0012 24.7 2.1 17 55-71 86-102 (182)
107 1ec6_A RNA-binding protein NOV 25.4 1.2E+02 0.0042 18.6 6.5 51 37-91 23-75 (87)
108 3ssr_B Carbon dioxide concentr 25.4 1.3E+02 0.0045 20.2 4.9 54 31-90 12-65 (110)
109 2pa2_A 60S ribosomal protein L 25.1 79 0.0027 22.6 3.8 18 60-77 96-113 (151)
110 3klr_A Glycine cleavage system 25.1 95 0.0032 21.3 4.2 41 30-74 17-58 (125)
111 2axy_A Poly(RC)-binding protei 24.5 1.2E+02 0.0041 18.1 6.8 48 36-90 24-71 (73)
112 1dtj_A RNA-binding neurooncolo 23.7 1.2E+02 0.0042 17.9 5.5 49 37-89 23-73 (76)
113 1vq8_H 50S ribosomal protein L 23.6 74 0.0025 23.3 3.5 18 18-35 42-59 (171)
114 2a10_A CCMK4, carbon dioxide c 23.4 1.6E+02 0.0054 20.2 5.1 54 32-91 15-68 (125)
115 2a1b_A CCMK2, carbon dioxide c 22.9 1.3E+02 0.0046 20.3 4.6 54 31-90 12-65 (116)
116 3n79_A PDUT; FES cluster, BMC 22.7 1.4E+02 0.0047 21.8 4.9 55 31-91 12-66 (192)
117 3tzu_A GCVH, glycine cleavage 22.4 1.1E+02 0.0039 21.3 4.2 38 32-73 36-74 (137)
118 3mxu_A Glycine cleavage system 22.4 1.1E+02 0.0038 21.5 4.2 42 29-74 38-80 (143)
119 1j4w_A FUSE binding protein; s 22.0 2E+02 0.0068 19.7 7.5 51 37-92 23-73 (174)
120 4axj_A EUTM, ethanolamine carb 21.5 1.9E+02 0.0064 19.3 5.1 52 31-88 15-66 (104)
121 3bn4_A Carbon dioxide-concentr 20.7 1.4E+02 0.0049 20.4 4.3 53 31-89 12-64 (122)
122 1x4n_A FAR upstream element bi 20.7 1.6E+02 0.0056 18.3 7.1 50 37-91 35-84 (92)
123 2anr_A Neuro-oncological ventr 20.2 2.2E+02 0.0075 19.5 7.2 52 36-90 123-174 (178)
No 1
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=5.1e-45 Score=293.15 Aligned_cols=125 Identities=44% Similarity=0.670 Sum_probs=121.3
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033021 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||.++++++.+++++|++|++||+||++++.++|+.++|+++++|+++||+.++||++|++++|++++||++||+
T Consensus 27 ~~gD~Tt~~~~~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~v~~~~~dG~~v~~g~~v~~i~G~~~~ll~~Er~ 106 (286)
T 1x1o_A 27 GQGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAEGARVAEGTEVARVRGPLRGILAGERL 106 (286)
T ss_dssp TTCCHHHHHHSCTTCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEEEEEEEEHHHHHHHHHH
T ss_pred CCCCccchhhcCCCCeEEEEEEECCCEEEECHHHHHHHHHHcCCCEEEEEEcCCCCCccCCCEEEEEEEcHHHHHHHHHH
Confidence 57899999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033021 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||+++. +++++|||||+||+|.+|||||
T Consensus 107 aLn~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pglr~~~kyAv 153 (286)
T 1x1o_A 107 ALNLLQRLSGIATLTRAYVEALAGTKAQILDTRKTTPGLRALEKYAV 153 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCcEEEEcCCCChhhHHHHHHHH
Confidence 99999999999999999999995 6999999999999999999996
No 2
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=100.00 E-value=7.2e-45 Score=293.69 Aligned_cols=123 Identities=35% Similarity=0.480 Sum_probs=119.5
Q ss_pred CCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHH
Q 033021 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVV 85 (129)
Q Consensus 6 ~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~ 85 (129)
+||+||..++|++. ++++|++|++||+||++++.++|+.+|++++++|+++||+.++||++|++++|++++||++||++
T Consensus 41 ~gD~tt~~l~~~~~-~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~v~~i~G~a~~ll~~ER~a 119 (300)
T 3l0g_A 41 KGDITTNSILINEK-VNFAINTRENLVVCGIPILEEVFNMNKEHVKYEIHKKDGDITGKNSTLVSGEALAIYLLPIERVI 119 (300)
T ss_dssp TCCHHHHHHCSSCE-EEEEEEESSCEECCCHHHHHHHHHHTTTTEEEEECCCTTCEECSSCEEEEEEEEHHHHGGGHHHH
T ss_pred CCCcchhhcccCCc-EEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCCEeeCCCEEEEEEECHHHHHHHHHHH
Confidence 58999998888888 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033021 86 LNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 86 LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 120 LN~L~~~SGIAT~T~~~v~~~~~~~~~i~dTRKT~PGlR~lekyAV 165 (300)
T 3l0g_A 120 LNFIQHASGIASITRQFVDEVSGTKVKIRSTRKTTPGLRMLDKYSV 165 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEEeecCccChhhhHHHHHHH
Confidence 9999999999999999999995 6999999999999999999997
No 3
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=100.00 E-value=4.1e-44 Score=288.12 Aligned_cols=123 Identities=33% Similarity=0.587 Sum_probs=118.6
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033021 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+|+. + +++.+++++|++|++||+||++++.++|+.+||+++++|+++||+.++||++|++++|++++||++||+
T Consensus 32 ~~gD~T~~-~-~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~v~~i~G~a~~ll~~ER~ 109 (287)
T 3tqv_A 32 ATGDITAQ-L-AEDIDTTAFCITREEMILCGQDFANEVINQLDKNIQITWLYSDAQKVPANARIFELKGNVRSILTAERT 109 (287)
T ss_dssp TTCCGGGG-G-SCSCEEEEEEEESSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEEEEEEEEHHHHHHHHHH
T ss_pred CCCccccc-C-CCCCeEEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCCEeeCCCEEEEEEEcHHHHHHHHHH
Confidence 57999985 6 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033021 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 110 aLN~L~~~SGIAT~t~~~v~~~~g~~~~i~dTRKT~PglR~l~kyAV 156 (287)
T 3tqv_A 110 ILNFIQMLSGTATVTNKLVKLISQYKTKLLDTRKTIPGFRLAQKYAV 156 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecccCcchHHHHHHHH
Confidence 99999999999999999999995 7999999999999999999996
No 4
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=100.00 E-value=4.8e-43 Score=281.68 Aligned_cols=121 Identities=29% Similarity=0.450 Sum_probs=117.0
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCC-eEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHH
Q 033021 5 SAGDVTCMATIPLDMEVEAHFLAKED-GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAER 83 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~-gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER 83 (129)
|+||+||.++ ++.+++++|++|++ ||+||++++.++|+.++ ++++|+++||+.++||++|++++|++++||++||
T Consensus 29 ~~gD~Tt~~~--~~~~~~a~~~ar~~pgv~aG~~~~~~~f~~~~--~~v~~~~~dG~~v~~g~~v~~i~G~~~~ll~~Er 104 (285)
T 1o4u_A 29 GKLDLASFPL--RNTTAGAHLLLKTENVVASGIEVSRMFLEKMG--LLSKFNVEDGEYLEGTGVIGEIEGNTYKLLVAER 104 (285)
T ss_dssp CSCCTTTGGG--TTCEEEEEEEECCSEEECCSHHHHHHHHHHTT--CEEEESCCTTCEEESCEEEEEEEEEHHHHHHHHH
T ss_pred CCCCccchhc--cCCeEEEEEEEcCCCeEEEcHHHHHHHHHHcC--CEEEEEcCCCCCcCCCCEEEEEEEcHHHHHHHHH
Confidence 5789999876 68899999999999 99999999999999998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCCeEeeccCCCCCchhhhhhcC
Q 033021 84 VVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 84 ~~LN~L~~~SGIAT~T~~~v~~a~~~~i~~TRKt~PGlR~leKyAV 129 (129)
++||||||+|||||+|++||+++.+++|+|||||+||+|.+|||||
T Consensus 105 ~aLn~l~~~SGIAT~t~~~v~~~~~~~i~~TRKt~Pglr~~~kyAv 150 (285)
T 1o4u_A 105 TLLNVLSVMFSVATTTRRFAEKLKHAKIAATRKILPGLGVLQKIAV 150 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSSEEECCSCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEeecCCCChhhHHHHHHHH
Confidence 9999999999999999999999977999999999999999999996
No 5
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=100.00 E-value=4.1e-43 Score=283.52 Aligned_cols=124 Identities=36% Similarity=0.614 Sum_probs=114.5
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033021 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||.. +|++.+++++|++|++||+||++++.++|+.++++++++|+++||+.++||++|++++|++++||.+||+
T Consensus 42 ~~gD~Tt~~-~~~~~~~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~l~~v~G~a~~ll~~Er~ 120 (298)
T 3gnn_A 42 GSGDQTGRL-VPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDWRHREGDRMSADSTVCELRGPARALLTAERN 120 (298)
T ss_dssp HHC-----C-CCCCSEEEEEEEECSCEECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEEEEEEEEHHHHHHHHHH
T ss_pred CCCCchhhh-cCCCceEEEEEEECCCEEEEcHHHHHHHHHHcCCCeEEEEEcCCCCEecCCCEEEEEEecHHHHHHHHHH
Confidence 468999975 6788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033021 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||+++. +++|+|||||+||+|.+|||||
T Consensus 121 aLN~L~~~SGIAT~t~~~v~a~~g~~~~i~~TRKt~Pglr~l~kyAv 167 (298)
T 3gnn_A 121 ALNFLQLLSGVASATRQYVDRIADTRARILDTRKTLPGLRLAQKYAV 167 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCCEECCSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCcchHHHHHhhH
Confidence 99999999999999999999995 6999999999999999999996
No 6
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=8.9e-43 Score=283.77 Aligned_cols=123 Identities=33% Similarity=0.542 Sum_probs=119.6
Q ss_pred CCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHH
Q 033021 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVV 85 (129)
Q Consensus 6 ~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~ 85 (129)
+||+||. ++|++.+++++|++|++||+||++++.++|+.+||+++++|+++||+.|+||++|++++|++++||.+||++
T Consensus 65 ~gD~Tt~-~~~~~~~~~a~i~are~gVlaG~~~a~~vf~~ld~~~~v~~~~~dG~~v~~g~~l~~v~G~a~~ll~~Er~a 143 (320)
T 3paj_A 65 AADITAS-LIPADRISTATIITREAGVFCGQLWADEVFKQLGGQVSIEWHVQDGDTLTPNQTLCTLTGPARILLTGERNA 143 (320)
T ss_dssp GGCTTGG-GSCTTCEEEEEEEESSCEECCCHHHHHHHHHHTTSCCEEEESSCTTCEECTTCEEEEEEEEHHHHHHHHHHH
T ss_pred CCccccc-ccCCCCeEEEEEEECCCceEecHHHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEEecHHHHHHHHHHH
Confidence 7899998 788899999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033021 86 LNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 86 LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
||||||+|||||+|++||+++. +++++|||||+||+|.+|||||
T Consensus 144 LN~L~~~SGIAT~t~~~v~aa~g~~~~i~~TRKT~PglR~l~kyAV 189 (320)
T 3paj_A 144 MNFIQTLSGCATATARYVQELKGTQCRLLDTRKTIPGLRSALKYAV 189 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecCCCccchHHHhhhH
Confidence 9999999999999999999995 7999999999999999999996
No 7
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=100.00 E-value=3.9e-42 Score=276.20 Aligned_cols=124 Identities=33% Similarity=0.493 Sum_probs=119.2
Q ss_pred CCC--CcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhh-c-CCCcEEEEecCCCCeeecCCEEEEEEechhhHHH
Q 033021 5 SAG--DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE-V-DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVI 80 (129)
Q Consensus 5 ~~g--DlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~-~-~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~ 80 (129)
|+| |+||+++ +++.+++++|++|++||+||++++.++|+. + +|+++++|+++||+.++||++|++++|++++||+
T Consensus 23 ~~g~~D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~~v~~~~~dG~~v~~g~~v~~i~G~~~~ll~ 101 (284)
T 1qpo_A 23 RYGPDVTTLATV-PASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPGEALMTLEAQTRGLLT 101 (284)
T ss_dssp TTCCCHHHHHHS-CTTCEEEEEEEESSCEECCCHHHHHHHHHHHHCTTSEEEEEECCTTCEECTTCEEEEEEEEHHHHHH
T ss_pred CCCCCCcccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHHhCCCCCEEEEEEcCCCCEecCCcEEEEEEEeHHHHHH
Confidence 466 9999988 888999999999999999999999999999 8 8889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033021 81 AERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 81 ~ER~~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||++||||||+|||||+|++||+++. +++|++||||+||+|.+|||||
T Consensus 102 ~Er~~Ln~l~~~SGIAT~t~~~v~~~~g~~~~i~~tRKt~Pglr~l~k~Av 152 (284)
T 1qpo_A 102 AERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAV 152 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecccCCCchHHHhhhh
Confidence 999999999999999999999999994 6899999999999999999996
No 8
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=100.00 E-value=1.8e-39 Score=258.84 Aligned_cols=122 Identities=28% Similarity=0.446 Sum_probs=117.4
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033021 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||. ++|++.+++++|++|++||+||++++.++|+.++ ++++|+++||+.+.||++|++++|+++++|.+||+
T Consensus 16 ~~gd~tt~-~~~~~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~~v~G~~~~~l~~Er~ 92 (273)
T 2b7n_A 16 GHGDLFER-VLEKDFKATAFVRAKQEGVFSGEKYALELLEMTG--IECVQTIKDKERFKPKDALMEIRGDFSMLLKVERT 92 (273)
T ss_dssp TTCCSHHH-HCSCCCEEEEEEEESSCEECCCHHHHHHHHHHTT--CEEEEECCTTCEECTTCEEEEEEEEHHHHHHHHHH
T ss_pred CCCCceee-ccCCCCeEEEEEEEcCCEEEEcHHHHHHHHHHCC--cEEEEEcCCCCCcCCCCEEEEEEecHHHHHHHHHH
Confidence 57899998 6778899999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033021 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||++++ ++++++||||+||+|.+|||||
T Consensus 93 ~Ln~l~~~SgIAT~t~~~v~a~~~~~~~~~~tRkt~p~~r~~~~~A~ 139 (273)
T 2b7n_A 93 LLNLLQHSSGIATLTSRFVEALNSHKVRLLDTRKTRPLLRIFEKYSV 139 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSSEEECCSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCChhhHHHHHHHH
Confidence 99999999999999999999995 6999999999999999999985
No 9
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=100.00 E-value=7.2e-39 Score=258.40 Aligned_cols=121 Identities=33% Similarity=0.585 Sum_probs=117.5
Q ss_pred CcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhc-CCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHH
Q 033021 8 DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV-DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVL 86 (129)
Q Consensus 8 DlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~-~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~L 86 (129)
|+||+++ +++.+++++|++|++||+||++++.++|+.+ ||+++++|+++||+.|+||++|++++|+++++|.+||++|
T Consensus 43 D~Tt~~~-~~~~~~~a~~~ar~~gv~aG~~~~~~~f~~~~~~~~~v~~~~~dG~~v~~g~~~~~v~G~~~~~l~~Er~aL 121 (296)
T 1qap_A 43 DITAQLL-PADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDAIHANQTVFELQGPARVLLTGERTAL 121 (296)
T ss_dssp CTGGGGS-CTTCEECCEEEESSCEECCCHHHHHHHHHHHHTTSSEEEESCCTTCEECTTCEEEEEEEEHHHHHHHHHHHH
T ss_pred Ccccccc-CCCCeEEEEEEECCCEEEECHHHHHHHHHhcCCCCeEEEEEcCCCCEecCCCEEEEEEEcHHHHHHHHHHHH
Confidence 9999988 8889999999999999999999999999999 8889999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033021 87 NFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 87 N~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
|||+|+|||||+|++||+++. ++++++||||+||+|.+|||||
T Consensus 122 n~l~~~SgIAT~t~~~v~~~~gt~v~i~~tRkt~P~~r~~e~~Av 166 (296)
T 1qap_A 122 NFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAV 166 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSSCEEECCSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCcccHHHHHHHH
Confidence 999999999999999999994 6999999999999999999985
No 10
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=100.00 E-value=8.8e-39 Score=257.96 Aligned_cols=121 Identities=30% Similarity=0.504 Sum_probs=115.9
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033021 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||+ +++ +.+++++|++|++||+||++++.++|+.++ ++++|+++||+.+.||++|++++|+++++|.+||+
T Consensus 30 ~~gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~l~~v~G~~~~~l~~Er~ 105 (299)
T 2jbm_A 30 PGLNYAAL-VSG-AGPSQAALWAKSPGVLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVAEVRGPAHCLLLGERV 105 (299)
T ss_dssp SSCCTTHH-HHC-SCEEEEEEEECSCEECCCHHHHHHHHHHTT--CEEEESSCTTCEECSSEEEEEEEEEHHHHHHHHHH
T ss_pred CCCCceee-ccC-CCeEEEEEEEcCCEEEEcHHHHHHHHHHcC--CEEEEEcCCCCCCCCCCEEEEEEEcHHHHHHHHHH
Confidence 57899998 566 889999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--C--CeEeeccCCCCCchhhhhhcC
Q 033021 85 VLNFMQRMSGIATLTRAMADLAH--P--ATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~--~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||+|+|||||+|++||++++ + ++++|||||+||+|.+|||||
T Consensus 106 ~Ln~l~~~SgIAT~t~~~v~a~~~~~~~~~~~~tRkt~p~~r~~e~~A~ 154 (299)
T 2jbm_A 106 ALNTLARCSGIASAAAAAVEAARGAGWTGHVAGTRKTTPGFRLVEKYGL 154 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeecCCCChhhHHHHHHHH
Confidence 99999999999999999999993 5 999999999999999999985
No 11
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=100.00 E-value=4.1e-38 Score=253.56 Aligned_cols=121 Identities=36% Similarity=0.615 Sum_probs=115.9
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecC------CEEEEEEechhhH
Q 033021 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG------LQFGKVSGRAHSI 78 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g------~~i~~i~G~a~~l 78 (129)
|+||+||. +++ +.+++++|++|++||+||++++.++|+.++ ++++|+++||+.+.|| ++|++++|+++++
T Consensus 26 ~~gD~tt~-~~~-~~~~~~~~~~r~~~v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~~~~~l~~v~G~~~~~ 101 (294)
T 3c2e_A 26 PSFDFGGY-VVG-SDLKEANLYCKQDGMLCGVPFAQEVFNQCE--LQVEWLFKEGSFLEPSKNDSGKIVVAKITGPAKNI 101 (294)
T ss_dssp SSCCHHHH-HHC-SCEEEEEEEECSSEECCCHHHHHHHHHHTT--CEEEESSCTTCEECGGGSSSSCEEEEEEEEEHHHH
T ss_pred CCCCcccc-ccC-CCeEEEEEEECCCEEEEcHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCCCCCCcEEEEEEEcHHHH
Confidence 57899998 566 889999999999999999999999999998 8999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhC--C--CeEeeccCCCCCchhhhhhcC
Q 033021 79 VIAERVVLNFMQRMSGIATLTRAMADLAH--P--ATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 79 l~~ER~~LN~L~~~SGIAT~T~~~v~~a~--~--~~i~~TRKt~PGlR~leKyAV 129 (129)
|.+||++||||+|+|||||+|++||++++ + +++++||||+||+|.+|||||
T Consensus 102 l~~Er~~Ln~l~~~SgIAT~t~~~v~aa~~~~~~~~~~~tRkt~p~~r~~e~~A~ 156 (294)
T 3c2e_A 102 LLAERTALNILSRSSGIATASHKIISLARSTGYKGTIAGTRKTTPGLRRLEKYSM 156 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCSCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCChhHHHHHHHHH
Confidence 99999999999999999999999999993 5 999999999999999999985
No 12
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=99.94 E-value=1.3e-27 Score=199.25 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=108.6
Q ss_pred Cccccccc---CCCCEEEEEEEeeC----CeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCC------EEEEEEec
Q 033021 8 DVTCMATI---PLDMEVEAHFLAKE----DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL------QFGKVSGR 74 (129)
Q Consensus 8 DlTt~~~~---~~~~~~~a~i~are----~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~------~i~~i~G~ 74 (129)
|.|++++. + +.+++++|++|+ .+|+||++++.++|+.++ +++. .++||+.+.||+ ++++++|+
T Consensus 29 ~tm~~~~~~~~~-~~~~~~~~~~R~~p~~~~v~aGl~~~~~~l~~~~--~~i~-~~~eG~~v~~g~~~g~~~~ll~v~G~ 104 (398)
T 2i1o_A 29 ERTISAIGDKCN-DLRVAMEATVSGPLDTWINFTGLDEVLKLLEGLD--VDLY-AIPEGTILFPRDANGLPVPFIRVEGR 104 (398)
T ss_dssp HHHHHHHGGGGG-GCEEEEEEEECSCCSSCEECCCHHHHHHHHTTSS--CEEE-ECCTTCEECSBCTTSCBCEEEEEEEE
T ss_pred HHHHHHHHHhCC-CCeEEEEEEECCCCCcceEEcCHHHHHHHHhhCC--eEEE-EeCCCCEECCCCcccccceEEEEEEe
Confidence 45555554 5 788999999999 999999999999999654 8885 999999999999 99999999
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033021 75 AHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 75 a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+.+++.+||++||+|+|+|||||+|+++++++. ++.+++||||+||+|.++|||+
T Consensus 105 ~~~~~~~E~~~Lnil~~~SgIAT~a~r~v~aa~~~~~~~fgtRrt~p~~~~~~~~A~ 161 (398)
T 2i1o_A 105 YCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFSFGIRRMHPAISPMIDRSA 161 (398)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECCGGGSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999995 5899999999999999999985
No 13
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=99.94 E-value=9.1e-28 Score=199.92 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=108.4
Q ss_pred Cccccccc---CCCCEEEEEEEeeC------CeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhH
Q 033021 8 DVTCMATI---PLDMEVEAHFLAKE------DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 78 (129)
Q Consensus 8 DlTt~~~~---~~~~~~~a~i~are------~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~l 78 (129)
|.|+++++ + +.+++++|++|+ ++|+||++++.++|+.++ +++. .++||+.+.||+++++++|++.++
T Consensus 29 ~tm~~~~~~~g~-~~~~~~~~~~R~~p~~~~~~v~aGl~~~~~~l~~~~--~~i~-~~~eG~~v~~ge~ll~v~G~~~~~ 104 (395)
T 2i14_A 29 LRTKKILEVKNI-RKKVLADVTTTSLPNNWRWGVLVGVEEVAKLLEGIP--VNVY-AMPEGTIFHPYEPVLQIEGDYADF 104 (395)
T ss_dssp HHHHHHHHHTTC-CCEEEEEEECSCCGGGCSCEECCCHHHHHHHHTTSS--EEEE-ECCTTCEECTTSCSEEEEEEHHHH
T ss_pred HHHHHHHHHhCC-CCeEEEEEEEcCCCCCCCceEeccHHHHHHHHhCCC--cEEE-EEcCCCEecCCCEEEEEEeeHHHH
Confidence 45565553 5 888999999999 999999999999999654 8885 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033021 79 VIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 79 l~~ER~~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+.+||++||+|+|+|||||+|+++++++. ++.+++||||+||+|.++|||+
T Consensus 105 ~~~E~~~Lnil~~~SgIAT~a~r~v~aa~~~~~~~fgtRrt~p~~~~~~~~A~ 157 (395)
T 2i14_A 105 GIYETALLGMLSQASGIATAALRIKIAAKFKPVYSFGIRHMHPAIAPMIDRAA 157 (395)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEECGGGGSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999995 6899999999999999999985
No 14
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1
Probab=99.83 E-value=2e-20 Score=159.50 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=100.7
Q ss_pred cCCCCEEEEEEEeeCC------eEEEcHHHHHHHHhhcCCC---------------------------cEEEEecCCCCe
Q 033021 15 IPLDMEVEAHFLAKED------GIIAGIALAEMIFHEVDPS---------------------------LKVEWSLKDGDH 61 (129)
Q Consensus 15 ~~~~~~~~a~i~are~------gvvaG~~~~~~~~~~~~~~---------------------------~~v~~~~~dG~~ 61 (129)
.+.+.++..++++|.. +|+||++++.+.++.+.-. .++ +.++||+.
T Consensus 29 g~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~l~~l~ft~~ei~yl~~~~~f~~~fl~~L~~~~f~~~i-~av~EG~~ 107 (494)
T 2f7f_A 29 GRADLHAVFECYFREMPFNHGYAIFAGLERLVNYLENLTFTESDIAYLREVEEYPEDFLTYLANFEFKCTV-RSALEGDL 107 (494)
T ss_dssp TCTTCEEEEEEECSSCGGGCSCEECCCHHHHHHHHHTCCCCHHHHHHHHHTSCCCHHHHHHHHTCCCCCEE-EECCTTCE
T ss_pred CCCCCEEEEEEEECCCCCCCceEehHhHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHHhCCCCceE-EEecCCCc
Confidence 3557889999999985 8999999999999876411 233 68999999
Q ss_pred eecCCEEEEEEechhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCc--hhhhhhcC
Q 033021 62 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTL--RLLDKWAV 129 (129)
Q Consensus 62 v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGl--R~leKyAV 129 (129)
+.||+++++|+|++.+++.+||++||+|+|+|||||+|++|++++. ++..++|||++|+. +..+|||+
T Consensus 108 v~~g~pll~v~Gp~~~~~~~Et~lLnil~~~S~IAT~a~r~v~aa~~~~v~~fgtRr~~~~~~a~~~~raa~ 179 (494)
T 2f7f_A 108 VFNNEPLIQIEGPLAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLEFGTRRAQELDAAIWGTRAAY 179 (494)
T ss_dssp ECTTSCSEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECCGGGSSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCcHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999996 57788899999986 88888874
No 15
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis}
Probab=98.39 E-value=3.5e-07 Score=76.43 Aligned_cols=103 Identities=16% Similarity=0.201 Sum_probs=79.7
Q ss_pred CCEEEEEEEeeCC----eEEEcHHHHHHHHhhcCCC-cEEEEe-------------c----CCCCee----ecCCEEEEE
Q 033021 18 DMEVEAHFLAKED----GIIAGIALAEMIFHEVDPS-LKVEWS-------------L----KDGDHV----HKGLQFGKV 71 (129)
Q Consensus 18 ~~~~~a~i~are~----gvvaG~~~~~~~~~~~~~~-~~v~~~-------------~----~dG~~v----~~g~~i~~i 71 (129)
+.++..+++.|.. ++++|++++...++.+.-+ -+++++ + =+|+.+ .||+++++|
T Consensus 32 ~~~v~fe~f~R~~~~~~~~~agl~~~l~~l~~l~ft~~ei~yL~~~~~~~~~fl~yL~~frf~~~~~~~~e~~~ep~l~I 111 (407)
T 3os4_A 32 HITVAAEFRCRSDELLGVYADEIRHQVTLMGQLALTSDEFIYLSSLPFFQDDYLHWLRDFRFKPEQVSVAVHDGKLDIRI 111 (407)
T ss_dssp TCEEEEEEEECSSCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHTSSSCCHHHHHHHHHCCCCGGGEEEEEETTEEEEEE
T ss_pred CCeEEEEEEEcCCCchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceEEEEecCCCcEEEEE
Confidence 7789999999997 7889999998888865300 011110 0 145554 799999999
Q ss_pred EechhhHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHh-----CCCeE--eeccCCCCC
Q 033021 72 SGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLA-----HPATI--LETRKTAPT 120 (129)
Q Consensus 72 ~G~a~~ll~~ER~~LN~L~~~---------------SGIAT~T~~~v~~a-----~~~~i--~~TRKt~PG 120 (129)
+|+..+.-..|-.+||+++++ |.|||+++++++++ .+..+ ++||..++-
T Consensus 112 ~Gp~~e~~l~Et~lL~iin~~~~~~~~~~~~~~~~~s~iatKa~r~~~aa~~~~~~~~~~~eFGtRR~~s~ 182 (407)
T 3os4_A 112 AGLWCEVIMWEVPLLAVISEIVHRRRSTQVTTDQAVQQLRTKLEQFNALSADIDITHFKLMDFGTRRRFSR 182 (407)
T ss_dssp EEEHHHHTTSHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHTTTSCCTTCCEEECCSTTCSCH
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhccccCCCeEEecccccccCH
Confidence 999999999999999999985 99999999999976 44444 568887664
No 16
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae}
Probab=98.07 E-value=1.7e-06 Score=73.11 Aligned_cols=103 Identities=12% Similarity=0.165 Sum_probs=78.7
Q ss_pred CCCEEEEEEEeeCC----eEEEcHHHHHHHHhhc-------------CC-----------C----cEEEEecCCCCeeec
Q 033021 17 LDMEVEAHFLAKED----GIIAGIALAEMIFHEV-------------DP-----------S----LKVEWSLKDGDHVHK 64 (129)
Q Consensus 17 ~~~~~~a~i~are~----gvvaG~~~~~~~~~~~-------------~~-----------~----~~v~~~~~dG~~v~~ 64 (129)
++.++..+++.|.. +.++|++++...++.+ +| + ..-.+.+++|+.+.+
T Consensus 35 ~~~~v~fe~f~R~~p~~~~~~agL~~~l~~L~~l~ft~eei~yL~~~~~~~~~~fl~yL~~frf~~~~~~av~eg~~~~~ 114 (446)
T 4hl7_A 35 PDVSVRYELIVRSEEDASGLLDAIRQEIAHLGTLRFSDADIHYLTQHAPHLKATFLQSLRYFHFVPQEQVEMGIVKQGGK 114 (446)
T ss_dssp TTCEEEEEEEEESCTTTHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHTTCCCCHHHHEEEEEECC---
T ss_pred CCCeEEEEEEECCCCCchhHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCCHHHHHHHHhCCCCCeEEEEEeccccCcC
Confidence 37789999999986 5678998888777742 10 0 110245788988999
Q ss_pred CCEEEEEEechhhHHHHHHHHHHHHHHH------hHHH---------HHHHHHHHHhC-----CCeE--eeccCCCC
Q 033021 65 GLQFGKVSGRAHSIVIAERVVLNFMQRM------SGIA---------TLTRAMADLAH-----PATI--LETRKTAP 119 (129)
Q Consensus 65 g~~i~~i~G~a~~ll~~ER~~LN~L~~~------SGIA---------T~T~~~v~~a~-----~~~i--~~TRKt~P 119 (129)
|+++++|+|+..+.-..|-.+||+|++. |.|| |++++++.++. +..+ ++||..++
T Consensus 115 ~ep~l~VeGp~~e~~L~Et~lL~iin~~~~~~~~s~ia~~~~~~~~~tKa~rl~~aA~~~~~~~~~l~eFGtRR~~s 191 (446)
T 4hl7_A 115 QQLRISIRGSWRDTILYETLVMAIVSEVRSRQRWAEVPADLPLKVLKTKLDQLKAEIERRGINNFSLTEMGTRRRFS 191 (446)
T ss_dssp -EEEEEEEEEHHHHTTHHHHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSTTCSC
T ss_pred CEEEEEEEEEHHHHhHHHHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhhcccccCCCeEEecccccccC
Confidence 9999999999999999999999999998 8997 89999999774 4444 56888876
No 17
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2
Probab=97.99 E-value=2.3e-05 Score=65.35 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=74.5
Q ss_pred CCEEEEEEEeeC--C--eEEEcHHHHHHHHhhc-----------------------------CC-CcEEEEecCCCCeee
Q 033021 18 DMEVEAHFLAKE--D--GIIAGIALAEMIFHEV-----------------------------DP-SLKVEWSLKDGDHVH 63 (129)
Q Consensus 18 ~~~~~a~i~are--~--gvvaG~~~~~~~~~~~-----------------------------~~-~~~v~~~~~dG~~v~ 63 (129)
+.++..+++.|. + ++++|++++...++.+ ++ .++|. . +||+
T Consensus 36 ~~~~~f~~~~R~~~~~~~~~~GL~~~l~~l~~~~ft~~ei~yL~~~~~f~~~fl~~L~~~rf~~~~v~I~-a-~EG~--- 110 (408)
T 1yir_A 36 NAEVEWEFRCRNQEDLRLYLPAIREQLEYLAGLAISDEQLAFLERIPFLAPDFIRFLGLFRFNPRYVQTG-I-ENDE--- 110 (408)
T ss_dssp TCEEEEEEEETTCCCCGGGHHHHHHHHHHHHHCCCCHHHHHHHHTSTTSCHHHHHHHHHCCCCGGGEEEE-E-ETTE---
T ss_pred CCEEEEEEEecCCCCcccHHHHHHHHHHHHHhCCCCHHHHHHHHhCCCCCHHHHHHHHhcCCCCceEEEE-c-CCCc---
Confidence 788999999998 4 7899999988887632 11 13442 2 6665
Q ss_pred cCCEEEEEEechhhHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHhC-----CCeE--eeccCCCCC
Q 033021 64 KGLQFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLAH-----PATI--LETRKTAPT 120 (129)
Q Consensus 64 ~g~~i~~i~G~a~~ll~~ER~~LN~L~~~---------------SGIAT~T~~~v~~a~-----~~~i--~~TRKt~PG 120 (129)
++++|+|+..+.-..|..+||++.+. +.|||++++++.++. +..+ ++||..++-
T Consensus 111 ---~~l~i~Gp~~~~~llEt~lL~ii~~~~~~~~~~~~~~~~~~~~iatK~~rl~~aa~~~~~~~~~l~dFG~RR~~~~ 186 (408)
T 1yir_A 111 ---FFLRLKGPWLHVILFEVPLLAMISEVRNRARYPAATVEQARERLQEKFDWLRREASAEELAGFKMADFGTRRRFSY 186 (408)
T ss_dssp ---EEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHCTTCBHHHHHHHHHHHHHHHHTTSCHHHHTTCEEEECCSTTCSCH
T ss_pred ---EEEEEEecHHHHHHHHHHHHHHHHhhHhhccCCccchHHHHHHHHHHHHHHHHhhcccccCCCeEEEecCcccccH
Confidence 78999999999999999999999996 999999999887664 5555 458877763
No 18
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=97.84 E-value=4.1e-05 Score=65.18 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=48.6
Q ss_pred cEEEEecCCCCeeecCCEEEEEEechhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSGRAHSI----VIAERVVLNFMQRMSGIATLTRAMADL 105 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~a~~l----l~~ER~~LN~L~~~SGIAT~T~~~v~~ 105 (129)
++|. .++||+.|.|++++++|+|+.... -..|..+|| |.|.|.|||.+++++++
T Consensus 114 ~~I~-A~pEGt~v~~~~Pll~Ve~~~~~f~w~~~llET~Ll~-l~~~s~vAT~A~r~~~~ 171 (484)
T 3dhf_A 114 IEIK-AVPEGFVIPRGNVLFTVENTDPECYWLTNWIETILVQ-SWYPITVATNSREQKKI 171 (484)
T ss_dssp EEEE-ECCTTCEEETTSCCEEEEESSGGGTTHHHHTHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred eEEE-EECCCccccCCCcEEEEEEcCcchhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4553 689999999999999999998844 678999999 99999999999999986
No 19
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2
Probab=97.67 E-value=5.7e-05 Score=63.53 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=75.1
Q ss_pred CCEEEEEEEeeCC------eEEEcHHHHHHHHhh-------------------------c-------CC--CcEEEEecC
Q 033021 18 DMEVEAHFLAKED------GIIAGIALAEMIFHE-------------------------V-------DP--SLKVEWSLK 57 (129)
Q Consensus 18 ~~~~~a~i~are~------gvvaG~~~~~~~~~~-------------------------~-------~~--~~~v~~~~~ 57 (129)
+.++..+++.|.+ .|++|++.+...+.. + ++ .++| +.++
T Consensus 41 ~~~~~f~~~~R~p~~~~~~~v~~GL~~~l~~l~~l~ft~eei~yL~~~~~~f~~~fl~~L~~~~f~~~~~~~v~I-~a~~ 119 (441)
T 1vlp_A 41 DVTVTYKYTNRSSQLTFNKEAINWLKEQFSYLGNLRFTEEEIEYLKQEIPYLPSAYIKYISSSNYKLHPEEQISF-TSEE 119 (441)
T ss_dssp TCEEEEEEEESCTTCCBCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHSTTCCCCHHHHEEE-EEEE
T ss_pred CCEEEEEEEEeCCCccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHhhcCCCCHHHHHHHHhcccCcCCCceEEE-EEec
Confidence 4678999999883 368999877765431 1 11 1344 3568
Q ss_pred C-CCeeecCCEEEEEEechhhHHHHHHHHHHHHH---HH------------hHHHHHHHHHHHHhCCCeE--eeccCCCC
Q 033021 58 D-GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ---RM------------SGIATLTRAMADLAHPATI--LETRKTAP 119 (129)
Q Consensus 58 d-G~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~---~~------------SGIAT~T~~~v~~a~~~~i--~~TRKt~P 119 (129)
| |+.+. |+++++|+|+....-..|..+||++. +. |.|||++++++ +.+..+ ++||...+
T Consensus 120 EgGt~v~-~ep~l~IeGp~~~~~llET~lL~ii~e~~~~~v~t~~~~~~~~~~iatka~r~~--a~~~~l~dFG~RR~~~ 196 (441)
T 1vlp_A 120 IEGKPTH-YKLKILVSGSWKDTILYEIPLLSLISEAYFKFVDIDWDYENQLEQAEKKAETLF--DNGIRFSEFGTRRRRS 196 (441)
T ss_dssp ETTEEEE-EEEEEEEEEEHHHHTTSHHHHHHHHHHHHHHHTCCCCCCTTHHHHHHHHHHHHH--HTTCCEEECCSTTCSC
T ss_pred CCCceEC-CEEEEEEEEcHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHhc--cCCCeEEecCCCCcCC
Confidence 8 99999 99999999999999999999999999 65 99999999987 444444 56887776
No 20
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis}
Probab=97.54 E-value=0.00042 Score=57.47 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=72.1
Q ss_pred cCCCCEEEEEEEeeCC----e-EEEcHHHHHHHHhhc------------------------------CC-CcEEEEecCC
Q 033021 15 IPLDMEVEAHFLAKED----G-IIAGIALAEMIFHEV------------------------------DP-SLKVEWSLKD 58 (129)
Q Consensus 15 ~~~~~~~~a~i~are~----g-vvaG~~~~~~~~~~~------------------------------~~-~~~v~~~~~d 58 (129)
.| +.++..+++.|.+ + +++|++.+...++.+ ++ .++| +.++|
T Consensus 25 ~~-~~~v~f~~~~R~~~~~~~~v~~gL~~~l~~l~~~~ft~~ei~yL~~~~~~f~~~fl~~L~~~r~~~~~v~I-~a~~E 102 (394)
T 2im5_A 25 FP-RAYGEFRFIDRNRQGFTEEFAELVRGEIRAMAALSLTRDEKEFLQRELPYLPPIYIDFLDGFRFDPEEVTV-SIDAQ 102 (394)
T ss_dssp CT-TCEEEEEEEETTCCCCCHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHCTTSCHHHHHHHHHCCCCGGGEEE-EECTT
T ss_pred CC-CCEEEEEEEeCCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCHHHHHHHHhcCCCCceEEE-EEcCC
Confidence 35 7789999999984 4 789999877765421 11 1233 24566
Q ss_pred CCeeecCCEEEEEEechhhHHHHHHHHHHHHH---HH------------hHHHHHHHHHHHHhCCCeE--eeccCCCCC
Q 033021 59 GDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ---RM------------SGIATLTRAMADLAHPATI--LETRKTAPT 120 (129)
Q Consensus 59 G~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~---~~------------SGIAT~T~~~v~~a~~~~i--~~TRKt~PG 120 (129)
| +++++|+|+....-..|..+||++. |. |.|||+++++ ++.+..+ ++||..++-
T Consensus 103 G------ep~l~I~Gp~~~~~l~Et~lL~ii~e~~~~~Vat~~~~~~~~~~iatka~r~--a~~~~~l~dFG~RR~~~~ 173 (394)
T 2im5_A 103 G------HLDIRAQGLLYRVTLWETPILAVISELYYRFIGAEPDWKQVEEVTRSKGELM--REHRATFSIFGMRRRFSL 173 (394)
T ss_dssp S------CEEEEEEEEHHHHGGGHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH--HHTTCCEEECCSTTCSCH
T ss_pred C------cEEEEEEecHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHH--hCCCCEEEEcCCcccccH
Confidence 6 6999999999999999999999999 66 9999999997 4554444 568887763
No 21
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2
Probab=97.31 E-value=0.001 Score=56.04 Aligned_cols=95 Identities=8% Similarity=-0.024 Sum_probs=70.3
Q ss_pred CCEEEEEEEeeCC-------eEEEcHHHHHHHHhhcCC-----------C----------------------cEEEEecC
Q 033021 18 DMEVEAHFLAKED-------GIIAGIALAEMIFHEVDP-----------S----------------------LKVEWSLK 57 (129)
Q Consensus 18 ~~~~~a~i~are~-------gvvaG~~~~~~~~~~~~~-----------~----------------------~~v~~~~~ 57 (129)
+.++..+++.|.. .+++|++.+...++.+.- . .++. .+
T Consensus 51 ~~~v~f~~~~R~~p~~~~~~~v~aGL~~~l~~l~~~~ft~eei~yL~~~~~~~~~~~f~~~fl~~L~~~~~~~~i~-a~- 128 (449)
T 1ybe_A 51 EVDATFSLINRTKTVRLAEEIDEMELREQLDHARTLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQLPEYEL-FK- 128 (449)
T ss_dssp TCBEEEEEEESCCSSCSTTTSCHHHHHHHHHHHTTCCCCHHHHHHHHHSCSSSCSCCSCHHHHHHHHTCCCCCCEE-EE-
T ss_pred CCeEEEEEEECCCCccCcchhHHHHHHHHHHHHHhCCCCHHHHHHHHhcccccCCCCCCHHHHHHHHhCCCCceEE-Ee-
Confidence 4459999999983 478899988877654210 0 0121 22
Q ss_pred CCCeeecCCEEEEEEechhhHHHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHhCCCeE--ee
Q 033021 58 DGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM----------------------SGIATLTRAMADLAHPATI--LE 113 (129)
Q Consensus 58 dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~----------------------SGIAT~T~~~v~~a~~~~i--~~ 113 (129)
+.|+++++|+|+..+.-..|..+||++.+. |.|||+++++ .++.+.++ ++
T Consensus 129 -----~EGep~l~I~Gp~~~~~llET~lL~ii~~~~~t~a~~t~~~~~~s~~~~~~~~~iatka~r~-~~a~~~~l~dFG 202 (449)
T 1ybe_A 129 -----RDGQYELNFHGRWMDTTLWEIPALSIINELRSRSAMRSLGYFTLDVLYARAKAKMWEKVERL-RELPGLRISDFG 202 (449)
T ss_dssp -----CSSCEEEEECSBHHHHGGGHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHH-TTCTTCCEEECC
T ss_pred -----cCCeEEEEEEecHHHHHHHHHHHHHHHhhhhhcccccccccccchhhHHHHHHHHHHHHHHH-hccCCCeEEecC
Confidence 445899999999999999999999999999 9999999998 44554444 55
Q ss_pred ccCCCCC
Q 033021 114 TRKTAPT 120 (129)
Q Consensus 114 TRKt~PG 120 (129)
||..++-
T Consensus 203 ~RR~~s~ 209 (449)
T 1ybe_A 203 TRRRHSF 209 (449)
T ss_dssp TTTCSCH
T ss_pred CcccCcH
Confidence 8877763
No 22
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=91.11 E-value=0.19 Score=32.28 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=22.1
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-++|++++|+.|++||+|++++..
T Consensus 21 ~v~~~~v~~Gd~V~~G~~l~~ie~~ 45 (87)
T 3crk_C 21 TVQRWEKKVGEKLSEGDLLAEIETD 45 (87)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECS
T ss_pred EEEEEEcCCCCEEcCCCEEEEEECC
Confidence 4578999999999999999999864
No 23
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=90.77 E-value=0.22 Score=30.21 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033021 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+|++++|+.|++||+|++++-.
T Consensus 11 ~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 11 WKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp EEECCCTTCEECTTCEEEEEEET
T ss_pred EEEEcCCcCEECCCCEEEEEECC
Confidence 46899999999999999999864
No 24
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=90.44 E-value=0.21 Score=31.21 Aligned_cols=23 Identities=17% Similarity=0.227 Sum_probs=20.6
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033021 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+|++++|+.|++||++++++..
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~ 38 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESA 38 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECS
T ss_pred EEEecCCCCEEcCCCEEEEEEcc
Confidence 56899999999999999999864
No 25
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.38 E-value=0.22 Score=33.01 Aligned_cols=25 Identities=24% Similarity=0.431 Sum_probs=22.1
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-++|++++|+.|++||+|++++-.
T Consensus 23 ~i~~~~v~~Gd~V~~G~~L~~ie~~ 47 (98)
T 2dnc_A 23 NIVKWLKKEGEAVSAGDALCEIETD 47 (98)
T ss_dssp CEEEESSCTTCEECTTSEEEEEECS
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEcc
Confidence 4578999999999999999999864
No 26
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=89.74 E-value=0.31 Score=29.59 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.9
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033021 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
++++++|+.|++||+|++++..
T Consensus 18 ~~~v~~G~~V~~G~~l~~i~~~ 39 (74)
T 2d5d_A 18 RVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp EECCCTTCEECTTCEEEEEEET
T ss_pred EEEcCCCCEeCCCCEEEEEecc
Confidence 5789999999999999999864
No 27
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=89.46 E-value=0.27 Score=30.65 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=21.8
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-.+|++++|+.|++||++++++..
T Consensus 16 ~v~~~~v~~G~~V~~G~~l~~ie~~ 40 (80)
T 1qjo_A 16 EVTEVMVKVGDKVAAEQSLITVEGD 40 (80)
T ss_dssp EEEECCCCTTCEECBTSEEEEEESS
T ss_pred EEEEEEcCCCCEECCCCEEEEEEcC
Confidence 3457899999999999999999865
No 28
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=88.85 E-value=0.27 Score=33.20 Aligned_cols=25 Identities=24% Similarity=0.516 Sum_probs=21.7
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-++|++++|+.|++||+|++++-.
T Consensus 23 ~v~~~~v~~Gd~V~~G~~L~~iE~~ 47 (108)
T 2dne_A 23 TIARWEKKEGDKINEGDLIAEVETD 47 (108)
T ss_dssp EEEECSSCTTCEECTTSEEEEEECS
T ss_pred EEEEEEcCCCCEecCCCEEEEEEcC
Confidence 3478899999999999999999864
No 29
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.80 E-value=2.8 Score=34.87 Aligned_cols=58 Identities=21% Similarity=0.272 Sum_probs=45.2
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhhcC-----------CCcEEEEecCCCCeeecCCEEEEEEechh
Q 033021 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAH 76 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~~~-----------~~~~v~~~~~dG~~v~~g~~i~~i~G~a~ 76 (129)
..+ +..+.|.++|+|..++- +-.+...+| +..-+..+++=|+.|++||+++++..+-.
T Consensus 324 ~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 324 LAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGDRVERGEALALVYHRRR 394 (423)
T ss_dssp CCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEECSS
T ss_pred CCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCCEeCCCCeEEEEEeCCc
Confidence 456 88999999999988542 223333333 36778899999999999999999999866
No 30
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=88.48 E-value=0.25 Score=32.34 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.0
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-++|++++|+.|++||+|++++..
T Consensus 20 ~v~~~~v~~Gd~V~~G~~l~~ie~~ 44 (93)
T 1k8m_A 20 TVKEWYVKEGDTVSQFDSICEVQSD 44 (93)
T ss_dssp EEEEECCCTTCEECSSSCCEEEECS
T ss_pred EEEEEEcCCcCEECCCCEEEEEEcC
Confidence 4578999999999999999999864
No 31
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=88.20 E-value=0.23 Score=31.04 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=20.8
Q ss_pred EEEEecCCCCeeecCCEEEEEEec
Q 033021 51 KVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-.+|++++|+.|++||+|++++..
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (79)
T 1ghj_A 18 VATWHKKPGEAVKRDELIVDIETD 41 (79)
T ss_dssp ECCCSSCTTSEECSSCEEEEEECS
T ss_pred EEEEEcCCCCEECCCCEEEEEEcc
Confidence 356899999999999999999853
No 32
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=87.67 E-value=0.62 Score=28.56 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.8
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033021 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
++++++|+.|++|++|++++..
T Consensus 21 ~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 21 KILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp EECCCTTCEECTTSEEEEEEET
T ss_pred EEEcCCcCEEcCCCEEEEEEcc
Confidence 5789999999999999999864
No 33
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.67 E-value=0.37 Score=31.67 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=19.4
Q ss_pred EEecCCCCeeecCCEEEEEEe
Q 033021 53 EWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G 73 (129)
+|++++|+.|++||+|++++-
T Consensus 30 ~~~v~~Gd~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 30 QYTVEDGGHVEAGSSYAEMEV 50 (100)
T ss_dssp EESSCTTEEECTTCEEEEEEE
T ss_pred EEEcCCcCEECCCCEEEEEEe
Confidence 678999999999999999984
No 34
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=87.17 E-value=0.31 Score=30.49 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=21.5
Q ss_pred EEEEecCCCCeeecCCEEEEEEec
Q 033021 51 KVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-.+|++++|+.|++||++++++..
T Consensus 18 i~~~~v~~Gd~V~~G~~l~~ie~~ 41 (81)
T 1gjx_A 18 IIAVEVNVGDTIAVDDTLITLETD 41 (81)
T ss_dssp EEEECCCSSCBCCSSCCCEEEECS
T ss_pred EEEEEcCCCCEECCCCEEEEEEeC
Confidence 467899999999999999999876
No 35
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=87.17 E-value=0.54 Score=29.91 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=20.9
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-+.|++++|+.|++|++|++++.
T Consensus 15 ~v~~~~v~~Gd~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 15 KLTQYTVEDGGHVEAGSSYAEMEV 38 (84)
T ss_dssp CEEEESSCTTEEECTTCEEEEEEC
T ss_pred EEEEEECCCCCEECCCCEEEEEEe
Confidence 345789999999999999999984
No 36
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=87.10 E-value=0.29 Score=30.54 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=19.7
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033021 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.|++++|+.|++||++++++..
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~ 45 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAM 45 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEET
T ss_pred ccccCCcCEECCCCEEEEEEec
Confidence 4689999999999999999864
No 37
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=86.90 E-value=2.6 Score=35.14 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=45.9
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhhcC-----------CCcEEEEecCCCCeeecCCEEEEEEechh
Q 033021 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAH 76 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~~~-----------~~~~v~~~~~dG~~v~~g~~i~~i~G~a~ 76 (129)
..+.+..+.+.++|+|..++- +-.+...+| +..-+..+++=|+.|++||+++++..+-+
T Consensus 331 ~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 331 KAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRP 402 (433)
T ss_dssp CCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred CCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEEcCCc
Confidence 456788999999999988542 223333333 36778899999999999999999999865
No 38
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=86.86 E-value=0.52 Score=33.02 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=21.9
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-++|++++|+.|++||+|++++..
T Consensus 43 ~V~~~~V~~Gd~V~~Gd~L~~iEa~ 67 (128)
T 1y8o_B 43 TVQRWEKKVGEKLSEGDLLAEIETD 67 (128)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECS
T ss_pred EEEEEecCCCCEecCCCEEEEEEcC
Confidence 4578999999999999999999854
No 39
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=86.44 E-value=3.7 Score=34.30 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=47.0
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhhcC-----------CCcEEEEecCCCCeeecCCEEEEEEechhhHHH
Q 033021 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVI 80 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~~~-----------~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~ 80 (129)
..+.+..+.+.++|+|..++- +-.+...+| +..-+.++++=|+.|++||+++++.-+...+-.
T Consensus 334 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~~~~~~ 409 (436)
T 3h5q_A 334 QAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDD 409 (436)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTCEECTTSEEEEEEESSSCCHH
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcCEeCCCCeEEEEeCChHhHHH
Confidence 456788999999999998653 334444443 467889999999999999999999933333333
No 40
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=86.22 E-value=0.24 Score=30.69 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=21.4
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-.+|++++|+.|++||++++++-.
T Consensus 17 ~v~~~~v~~G~~V~~G~~l~~ie~~ 41 (77)
T 2l5t_A 17 EIVRWDVKEGDMVEKDQDLVEVMTD 41 (77)
T ss_dssp EEEECSCCTTCEECSCCCCCEEESS
T ss_pred EEEEEEeCCCCEECCCCEEEEEEcc
Confidence 3457899999999999999999864
No 41
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=85.74 E-value=0.57 Score=30.73 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.2
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033021 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+|++++|+.|++||+|++++-.
T Consensus 26 ~~~~v~~Gd~V~~Gq~L~~ie~~ 48 (99)
T 2ejm_A 26 EKVFVKAGDKVKAGDSLMVMIAM 48 (99)
T ss_dssp EEECCCTTEEECSSCEEEEEESS
T ss_pred EEEECCCCCEECCCCEEEEEEcc
Confidence 35789999999999999999854
No 42
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=85.35 E-value=0.68 Score=30.79 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.5
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033021 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
++++++|+.|++|++|+++.-+
T Consensus 14 ~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 14 NKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EECSCTTSEECTTCEEEEEECT
T ss_pred EEECCCcCEECCCCEEEEECHH
Confidence 5689999999999999999987
No 43
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=84.37 E-value=5.2 Score=33.77 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=45.7
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhh---------cCCCcEEEEecCCCCeeecCCEEEEEEechhh
Q 033021 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE---------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 77 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~---------~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ 77 (129)
..+.+..+.|.++|+|..++. +-.+... .|+..-+..+++=|+.|++||+|+++..+-..
T Consensus 368 ~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~~~~~~ 438 (474)
T 1uou_A 368 RAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVHRDGPA 438 (474)
T ss_dssp CCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEEESSSS
T ss_pred CCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEEcCChh
Confidence 456788999999999987542 2222222 34457788999999999999999999988653
No 44
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=83.84 E-value=3.7 Score=34.31 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=47.2
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhhcC-----------CCcEEEEecCCCCeeecCCEEEEEEechhhHH
Q 033021 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIV 79 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~~~-----------~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll 79 (129)
..+.+..+.|.++|+|..++- +-.+...+| +..-+..+++=|+.|++||+|+++..+-...+
T Consensus 336 ~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~~~~~ 410 (440)
T 2tpt_A 336 TAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENNW 410 (440)
T ss_dssp CCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEEESSHHHH
T ss_pred CCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEecCCHhhH
Confidence 456788999999999988542 223333333 36778899999999999999999999866443
No 45
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=82.98 E-value=0.69 Score=30.06 Aligned_cols=24 Identities=29% Similarity=0.363 Sum_probs=20.6
Q ss_pred EEEEecCCCCeeecCCEEEEEEec
Q 033021 51 KVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-.+|++++|+.|++||+|++++..
T Consensus 36 v~~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 36 VVAVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp EEEECCCTTCCCCTTCCCEEEEC-
T ss_pred EEEEECCCCCEEcCCCEEEEEecc
Confidence 346889999999999999999864
No 46
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=79.78 E-value=0.17 Score=31.85 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.7
Q ss_pred EEEEecCCCCeeecCCEEEEEEec
Q 033021 51 KVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-.+|++++|+.|++||+|++++..
T Consensus 19 v~~~~v~~Gd~V~~G~~l~~ie~~ 42 (80)
T 1pmr_A 19 VATWHKKPGDAVVRDEVLVEIETD 42 (80)
T ss_dssp CCBCCCCTTCCBSSSCCBCBCCSS
T ss_pred EEEEECCCcCEECCCCEEEEEEcc
Confidence 357899999999999999998754
No 47
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=71.93 E-value=2.8 Score=31.26 Aligned_cols=22 Identities=14% Similarity=0.139 Sum_probs=19.6
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033021 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-++.++++||.|++||+|+++.
T Consensus 117 gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 117 GFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred cceEEEeCcCEEcCCCEEEEEC
Confidence 4678999999999999999984
No 48
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=71.82 E-value=0.79 Score=35.01 Aligned_cols=24 Identities=25% Similarity=0.453 Sum_probs=0.0
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-++|++++|+.|++||+|++++-
T Consensus 19 ~I~~w~vk~Gd~V~~Gd~L~~iEt 42 (229)
T 1zy8_K 19 NIVKWLKKEGEAVSAGDALCEIET 42 (229)
T ss_dssp ------------------------
T ss_pred EEEEEecCCCCEeCCCCEEEEEec
Confidence 346889999999999999998863
No 49
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=71.55 E-value=0.41 Score=30.41 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.1
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033021 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+|++++|+.|++||+|++++-.
T Consensus 14 ~~~~v~~Gd~V~~G~~L~~ie~~ 36 (85)
T 2k7v_A 14 TEVMVKVGDKVAAEQSLITVEGD 36 (85)
T ss_dssp CSCCCSSSCCCCCSSSCCCCSCC
T ss_pred EEEEcCCCCEEcCCCEEEEEEcc
Confidence 45788999999999999988754
No 50
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=68.43 E-value=2.9 Score=32.31 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=20.1
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033021 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
++++++|+.|++||+|+++.-+
T Consensus 44 ~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 44 TLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp EECCCTTCEECTTCEEEEECCH
T ss_pred EEEeCCCCEECCCCEEEEEChH
Confidence 5689999999999999999876
No 51
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=68.40 E-value=4 Score=25.06 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=17.0
Q ss_pred EEecCCCCeeecCCEEEEEE
Q 033021 53 EWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~ 72 (129)
..++++|+.+.+|++|++++
T Consensus 61 ~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 61 AILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EECSCTTCEECTTCEEEEEC
T ss_pred EEEcCCCCEECCCCEEEEEC
Confidence 35678999999999999874
No 52
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=68.18 E-value=3.9 Score=29.43 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.1
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033021 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.++.+++.||.|++||+|+++.
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEEC
T ss_pred ceEEEEcCCCEEcCCCEEEEEC
Confidence 4567899999999999999883
No 53
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=67.53 E-value=1.9 Score=32.38 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=20.2
Q ss_pred EEecCCCCeeecCCEEEEEEech
Q 033021 53 EWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
++++++|+.|++||+|+++.-+-
T Consensus 35 ~v~v~~G~~V~kGq~L~~ld~~~ 57 (277)
T 2f1m_A 35 KRNFKEGSDIEAGVSLYQIDPAT 57 (277)
T ss_dssp EECSCTTCEECTTSCSEEECCHH
T ss_pred EEEcCCCCEecCCCEEEEECcHH
Confidence 45899999999999999998763
No 54
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=66.62 E-value=5.2 Score=24.32 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=17.6
Q ss_pred EEecCCCCeeecCCEEEEEE
Q 033021 53 EWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~ 72 (129)
+.++++|+.+.+|++|++++
T Consensus 57 ~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 57 KILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EECCCTTCEECSCSEEEEEE
T ss_pred EEEeCCcCEECCCCEEEEEE
Confidence 46789999999999999875
No 55
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=66.17 E-value=1.2 Score=36.84 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=0.0
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033021 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-++|++++||.|++||+|++++
T Consensus 19 i~~w~v~~Gd~V~~gd~l~~vE 40 (428)
T 3dva_I 19 IVKWFVKPGDEVNEDDVLCEVQ 40 (428)
T ss_dssp ----------------------
T ss_pred EEEEEcCCCCEECCCCEEEEEE
Confidence 3678888888888888888776
No 56
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=66.02 E-value=4.5 Score=29.34 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=19.1
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033021 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.++.+++.||.|++||+|+++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEEC
T ss_pred ccEEEEeCcCEECCCCEEEEEC
Confidence 3567899999999999999883
No 57
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=65.72 E-value=3.5 Score=32.07 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=20.1
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033021 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
++++++|+.|++|++|+++.-+
T Consensus 70 ~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 70 SLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp ECCSCTTCEECTTCEEEEEECS
T ss_pred EEEcCCCCEEcCCCEEEEEChH
Confidence 5689999999999999999976
No 58
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=63.41 E-value=5 Score=34.90 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEe
Q 033021 49 SLKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
+.-++|++++|+.|++||+|++++-
T Consensus 621 G~v~~~~v~~Gd~V~~g~~l~~iEa 645 (681)
T 3n6r_A 621 GLIVKVDVEVGQEVQEGQALCTIEA 645 (681)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEEC
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 4457899999999999999999984
No 59
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=62.83 E-value=26 Score=22.10 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=45.7
Q ss_pred EEEEEEEeeCC--eEEEc--HHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHHHhH
Q 033021 20 EVEAHFLAKED--GIIAG--IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 94 (129)
Q Consensus 20 ~~~a~i~are~--gvvaG--~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~SG 94 (129)
....++..+.+ |.|-| =..+.++-+..+ +++++.-. .-...+.+++|.|+.+++..|.+.+++++...||
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tg--a~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~~g 86 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESG--ASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 86 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTC--CEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhC--CeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhhhc
Confidence 34444444443 33333 467777777777 55554221 1123468999999999999999999999988776
No 60
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=62.59 E-value=10 Score=23.12 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.3
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033021 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+.++..|+.+.+|++|+++...
T Consensus 53 ~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 53 KSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEESCCTTCEEETTSEEEEEECC
T ss_pred EEEEeCCCCEECCCCEEEEEecC
Confidence 34678999999999999998754
No 61
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=60.75 E-value=4.3 Score=29.44 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033021 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.++.+++.||.|++||+|+++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEEC
T ss_pred ccEEEEeCCCEEcCCCEEEEEC
Confidence 4667899999999999999984
No 62
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=59.82 E-value=28 Score=21.53 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=42.1
Q ss_pred eEEEc--HHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHHHhH
Q 033021 31 GIIAG--IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 94 (129)
Q Consensus 31 gvvaG--~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~SG 94 (129)
|.|-| =..+.++-+..+ +++++. +- .-...+.++.|.|+.+++..|-..+.+++...+|
T Consensus 19 g~iIGkgG~~Ik~I~~~tg--a~I~i~--~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 19 GSIIGKGGQRIKQIRHESG--ASIKID--EP-LEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp GGGTCGGGHHHHHHHHHHC--CEEEEC--CT-TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred CeeECCCchHHHHHHHHHC--CEEEEc--CC-CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 44444 467788888887 555442 21 1122468999999999999999999999987765
No 63
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=57.80 E-value=4.3 Score=32.08 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.1
Q ss_pred EEecCCCCeeecCCEEEEEEech
Q 033021 53 EWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
++++++|+.|++|++|+++.-+.
T Consensus 56 ~v~v~~Gd~V~kGq~L~~ld~~~ 78 (369)
T 1vf7_A 56 KRLFKEGSDVKAGQQLYQIDPAT 78 (369)
T ss_dssp ECCSCSSEEECTTSEEEEECCHH
T ss_pred EEEcCCCCEEcCCCEEEEECcHH
Confidence 46899999999999999998653
No 64
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=55.87 E-value=3.1 Score=32.44 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred EEecCCCCeeecCCEEEEEEech
Q 033021 53 EWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
++++++|+.|++||+|+++.-+.
T Consensus 45 ~v~v~~G~~V~~Gq~L~~ld~~~ 67 (369)
T 4dk0_A 45 KLYVKLGQQVKKGDLLAEIDSTT 67 (369)
T ss_dssp EECCCTTSCCCSSCCCEECCCHH
T ss_pred EEEECCCCEECCCCEEEEEcCHH
Confidence 56899999999999999998764
No 65
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=55.13 E-value=48 Score=22.71 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=45.6
Q ss_pred EEEEEeeCC--eEEE--cHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHHH
Q 033021 22 EAHFLAKED--GIIA--GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM 92 (129)
Q Consensus 22 ~a~i~are~--gvva--G~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~ 92 (129)
.+++..+.+ |.+- |=..+.++-+..+ +.+.+ -+|+..-...+..+.+.|+..++..|.+.++.+++..
T Consensus 86 ~~~i~vp~~~~g~iIGkgG~~I~~i~~~tg--a~I~i-~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 86 ETHIRVPASAAGRVIGKGGKTVNELQNLTA--AEVVV-PRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp EEEEEEETTTHHHHHCGGGHHHHHHHHHHC--CEEEC-CTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcChhheeeEEcCCChHHHHHHHHhC--CeEEE-CCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 444444443 3332 3466777777777 66643 3455443344569999999999999999999988754
No 66
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=54.48 E-value=9.8 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=18.8
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033021 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+.++..|+.+.+|++|+++...
T Consensus 52 ~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 52 ELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp EECSCTTCCBCTTSEEEEEECC
T ss_pred EEEeCCCCEECCCCEEEEEEcC
Confidence 3578899999999999999754
No 67
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=54.10 E-value=11 Score=24.16 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=20.0
Q ss_pred EEEecCCCCeeecCCEEEEEEech
Q 033021 52 VEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
.+.++++|+.+.+|++|++++-..
T Consensus 59 ~~i~v~~G~~V~~G~~l~~i~~~~ 82 (93)
T 1k8m_A 59 KKLYYNLDDIAYVGKPLVDIETEA 82 (93)
T ss_dssp EEECCCSSCEECTTSEEEEEECSC
T ss_pred EEEEcCCCCEeCCCCEEEEEecCC
Confidence 346889999999999999998543
No 68
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=53.19 E-value=8.5 Score=28.33 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=17.6
Q ss_pred EEecCCCCeeecCCEEEEEE
Q 033021 53 EWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~ 72 (129)
...+.||+.|++|++|+++-
T Consensus 167 ~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 167 IVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp EESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCEEcCCCEEEEcc
Confidence 45799999999999999874
No 69
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=53.04 E-value=31 Score=24.04 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=27.1
Q ss_pred CCeEEEc-HHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEe
Q 033021 29 EDGIIAG-IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 29 e~gvvaG-~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.+-+.-| .+.+...+ |.-..++ ..+.|+.|++|++++.++.
T Consensus 29 ~~~~~vGit~~a~~~l---G~i~~V~-lp~vGd~V~~Gd~l~~VEs 70 (136)
T 1zko_A 29 DKVATVGITNHAQEQL---GDVVYVD-LPEVGREVKKGEVVASIES 70 (136)
T ss_dssp TTEEEEEECHHHHHHH---CSEEEEE-CCCTTCEECTTCEEEEEEE
T ss_pred CCEEEEeeEhhhcccC---CCcEEEE-ecCCCCEEeCCCEEEEEEE
Confidence 3456677 45555444 4212333 2599999999999999985
No 70
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=53.01 E-value=9.1 Score=30.85 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.4
Q ss_pred Eec-CCCCeeecCCEEEEEEec
Q 033021 54 WSL-KDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 54 ~~~-~dG~~v~~g~~i~~i~G~ 74 (129)
+++ ++|+.|++||+|+++.-+
T Consensus 135 v~V~~~Gd~VkkGq~L~~ld~~ 156 (413)
T 3ne5_B 135 VYPLTVGDKVQKGTPLLDLTIP 156 (413)
T ss_dssp ECSCCTTCEECTTCEEEEEECC
T ss_pred EEeCCCCCEEcCCCEEEEEcCH
Confidence 466 899999999999999954
No 71
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=52.51 E-value=9.7 Score=23.88 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.3
Q ss_pred EEecCCCC-eeecCCEEEEEEech
Q 033021 53 EWSLKDGD-HVHKGLQFGKVSGRA 75 (129)
Q Consensus 53 ~~~~~dG~-~v~~g~~i~~i~G~a 75 (129)
++++++|+ .+.+|++|+++.-..
T Consensus 61 ~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 61 KILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EESSCTTCCCEETTCEEEEEESSS
T ss_pred EEEECCCCeEECCCCEEEEEEccc
Confidence 46889999 899999999997543
No 72
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=52.35 E-value=42 Score=21.31 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHH
Q 033021 37 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 90 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~ 90 (129)
..+.++-+..+ +++.+ .++|......+.+++|.|+.+++..|-..++.++.
T Consensus 35 ~~Ik~I~~~tg--a~I~I-~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~ 85 (94)
T 1x4m_A 35 ETIKQLQERAG--VKMVM-IQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIR 85 (94)
T ss_dssp SHHHHHHHHHT--SEEEE-CCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHC--CeEEe-cCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHh
Confidence 45666667776 56643 34555434467999999999999999888888764
No 73
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=51.62 E-value=49 Score=21.78 Aligned_cols=50 Identities=14% Similarity=0.340 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHH
Q 033021 37 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 91 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~ 91 (129)
..+.++-+..+ +++++.-.++ ...+.+++|.|+.+++..|.+.++.++..
T Consensus 31 ~~Ik~I~~~TG--akI~I~~~~~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 31 EMIKKIQNDAG--VRIQFKQDDG---TGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp HHHHHHHHHHT--CEEEECSSCS---SSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--cEEEEecCCC---CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 66777777777 6665433332 23467999999999999999999988764
No 74
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=50.91 E-value=10 Score=35.15 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=21.4
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-++|++++|+.|++||+|+.++.
T Consensus 1087 ~v~~~~v~~Gd~V~~G~~l~~iea 1110 (1150)
T 3hbl_A 1087 SVTEVKVSVGETVKANQPLLITEA 1110 (1150)
T ss_dssp EEEEECCCTTCEECTTCEEEEEES
T ss_pred EEEEEEeCCCCEECCCCEEEEEEe
Confidence 346899999999999999999984
No 75
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=50.69 E-value=8.9 Score=28.22 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=16.9
Q ss_pred EEecCCCCeeecCCEEEEE
Q 033021 53 EWSLKDGDHVHKGLQFGKV 71 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i 71 (129)
..+++||+.|++|++|++.
T Consensus 63 ~L~V~dG~~V~~G~~laew 81 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW 81 (190)
T ss_dssp EESSCTTCEECTTCEEEEC
T ss_pred EEEecCCCEEcCCCEEEEE
Confidence 3589999999999999984
No 76
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=47.69 E-value=12 Score=35.07 Aligned_cols=24 Identities=21% Similarity=0.040 Sum_probs=21.0
Q ss_pred EEEEecCCCCeeecCCEEEEEEec
Q 033021 51 KVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-++|++++||.|++||+|+.++-.
T Consensus 1178 v~~~~v~~Gd~V~~g~~l~~iEam 1201 (1236)
T 3va7_A 1178 FWKPVAAVGDHVEAGDGVIIIEAM 1201 (1236)
T ss_dssp EEEESSCTTCEECSSCEEEEEEET
T ss_pred EEEEEcCCCCEECCCCEEEEEEec
Confidence 357999999999999999999853
No 77
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=46.86 E-value=11 Score=28.17 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=16.6
Q ss_pred EEecCCCCeeecCCEEEEE
Q 033021 53 EWSLKDGDHVHKGLQFGKV 71 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i 71 (129)
..+++||+.|++|++|++-
T Consensus 22 ~L~V~dG~~VkkG~~laeW 40 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEE 40 (193)
T ss_dssp EESCCTTCEECTTCEEEEE
T ss_pred EEEECCCCEEcCCCEEEEe
Confidence 3589999999999999983
No 78
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=45.59 E-value=4.4 Score=35.23 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEe
Q 033021 49 SLKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
+.-++|++++|+.|++||+|++++-
T Consensus 611 G~v~~~~v~~Gd~V~~g~~l~~iEa 635 (675)
T 3u9t_A 611 GSIVRVLVEPGQTVEAGATLVVLEA 635 (675)
T ss_dssp -------------------------
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEe
Confidence 3557899999999999999999884
No 79
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=42.00 E-value=11 Score=33.20 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.9
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEe
Q 033021 49 SLKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
+.-++|++++|+.|++||+|++++.
T Consensus 658 G~V~~v~V~~Gd~V~~Gq~L~~iEa 682 (718)
T 3bg3_A 658 GKVIDIKVVAGAKVAKGQPLCVLSA 682 (718)
T ss_dssp EEEEEECSCTTCCBCTTCCCEEEES
T ss_pred eEEEEEEeCCCCeeCCCCEEEEEec
Confidence 3456899999999999999999985
No 80
>1ffk_F Ribosomal protein L10E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1jj2_H 1k73_J* 1k8a_J* 1k9m_J* 1kc8_J* 1kd1_J* 1kqs_H* 1m1k_J* 1m90_J* 1n8r_J* 1nji_J* 1q7y_J* 1q81_J* 1q82_J* 1q86_J* 1qvf_H 1qvg_H 1w2b_H 3cxc_H* 1giy_P ...
Probab=41.22 E-value=28 Score=25.17 Aligned_cols=17 Identities=6% Similarity=-0.265 Sum_probs=15.2
Q ss_pred eeecCCEEEEEEechhh
Q 033021 61 HVHKGLQFGKVSGRAHS 77 (129)
Q Consensus 61 ~v~~g~~i~~i~G~a~~ 77 (129)
.|++|++|+|+.|..++
T Consensus 114 rVk~G~ilfei~gv~~~ 130 (157)
T 1ffk_F 114 RSHGANHDFIAWVNPDP 130 (157)
T ss_pred EEcCCCEEEEEeccCHH
Confidence 48999999999998777
No 81
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=41.07 E-value=23 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=20.9
Q ss_pred EEecCCCC-eeecCCEEEEEEechhh
Q 033021 53 EWSLKDGD-HVHKGLQFGKVSGRAHS 77 (129)
Q Consensus 53 ~~~~~dG~-~v~~g~~i~~i~G~a~~ 77 (129)
+.++++|+ .+.+|++|+++.-...+
T Consensus 63 ~i~v~~G~~~V~~G~~l~~i~~~~~~ 88 (108)
T 2dne_A 63 KILVAEGTRDVPIGAIICITVGKPED 88 (108)
T ss_dssp ECSSCTTCCSEETTCEEEEEESCHHH
T ss_pred EEEeCCCCeeecCCCEEEEEecCccc
Confidence 35789998 89999999999876544
No 82
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=40.31 E-value=75 Score=20.68 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=34.9
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCe-eecCCEEEEEEechhhHHHHHHHHHHHHH
Q 033021 37 ALAEMIFHEVDPSLKVEWSLKDGDH-VHKGLQFGKVSGRAHSIVIAERVVLNFMQ 90 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~-v~~g~~i~~i~G~a~~ll~~ER~~LN~L~ 90 (129)
..+.++-+..+ ++|++.- +.+. -...+.+++|.|+.+++..|...+++++.
T Consensus 27 ~~Ik~I~~~TG--a~I~I~~-~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~ 78 (107)
T 2hh2_A 27 ENVKAINQQTG--AFVEISR-QLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIE 78 (107)
T ss_dssp CHHHHHHHHSS--SEEEECC-CCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhC--CEEEEcC-ccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHh
Confidence 56777777777 5665432 2211 12356899999999999999888887753
No 83
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=38.48 E-value=22 Score=28.08 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=19.4
Q ss_pred EEEecCCCCeeecCCEEEEEEe
Q 033021 52 VEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G 73 (129)
++..+++|+.|++||+|+++.-
T Consensus 278 ~~~~~~~g~~V~~G~~La~i~d 299 (354)
T 3cdx_A 278 FEPTHYVGEEVRTGETAGWIHF 299 (354)
T ss_dssp EEESCCTTCEECTTSEEEEEEC
T ss_pred EEEeCCCCCEeCCCCEEEEEEC
Confidence 5667889999999999999984
No 84
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=37.79 E-value=30 Score=23.75 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=21.9
Q ss_pred EEEecCCCC-eeecCCEEEEEEechhhH
Q 033021 52 VEWSLKDGD-HVHKGLQFGKVSGRAHSI 78 (129)
Q Consensus 52 v~~~~~dG~-~v~~g~~i~~i~G~a~~l 78 (129)
.+.++++|+ .|..|++|++++-...++
T Consensus 82 ~~i~v~~Gd~~V~~G~~L~~i~~~~~~~ 109 (128)
T 1y8o_B 82 AKILVPEGTRDVPLGTPLCIIVEKEADI 109 (128)
T ss_dssp EEESSCTTCCSEETTCEEEEEESSGGGG
T ss_pred EEEEeCCCCeeecCCCEEEEEecCccch
Confidence 346889998 899999999998765543
No 85
>1zw2_B Talin, metavinculin; complex, protein binding; 2.10A {Gallus gallus}
Probab=35.87 E-value=29 Score=17.80 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHhC
Q 033021 89 MQRMSGIATLTRAMADLAH 107 (129)
Q Consensus 89 L~~~SGIAT~T~~~v~~a~ 107 (129)
|.-+++|++.+.-+|+.+.
T Consensus 2 L~aak~i~~a~~~Lvk~A~ 20 (26)
T 1zw2_B 2 LEAAKSIAAATSALVKAAS 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHhh
Confidence 6778999999999999874
No 86
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=34.70 E-value=22 Score=32.98 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=18.2
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033021 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-++|++++|+.|++||+|+.++.
T Consensus 1105 ~v~~~~v~~Gd~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A 1105 VISRVFVSSGQAVNAGDVLVSIEA 1128 (1165)
T ss_dssp EEEEECCSSCCCC---CEEEEEEC
T ss_pred EEEEEEcCCcCEeCCCCEEEEEEc
Confidence 346889999999999999999983
No 87
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=34.57 E-value=49 Score=22.64 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=26.1
Q ss_pred EEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033021 32 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 32 vvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+.-|+... ....+|.-..++ ..+.|+.|++|+.+++++..
T Consensus 24 ~~vGitd~--a~~~lG~i~~v~-lp~vG~~V~~g~~l~~vEs~ 63 (128)
T 3a7l_A 24 YTVGITEH--AQELLGDMVFVD-LPEVGATVSAGDDCAVAESV 63 (128)
T ss_dssp EEEEECHH--HHHHHCSEEEEE-CCCTTCEECTTCEEEEEEES
T ss_pred EEEEEehH--HhccCCceEEEE-ecCCCCEEeCCCEEEEEEec
Confidence 55676332 234555312332 35899999999999999854
No 88
>3r8s_M 50S ribosomal protein L16; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_K 1p86_K 1vs8_M 1vs6_M 2aw4_M 2awb_M 1vt2_M 2i2v_M 2j28_M 2i2t_M* 2qao_M* 2qba_M* 2qbc_M* 2qbe_M 2qbg_M 2qbi_M* 2qbk_M* 2qov_M 2qox_M 2qoz_M* ...
Probab=34.52 E-value=37 Score=23.77 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=12.7
Q ss_pred eeecCCEEEEEEec
Q 033021 61 HVHKGLQFGKVSGR 74 (129)
Q Consensus 61 ~v~~g~~i~~i~G~ 74 (129)
.|++|++|+|+.|.
T Consensus 95 ~Vk~G~ilfEi~g~ 108 (136)
T 3r8s_M 95 LIQPGKVLYEMDGV 108 (136)
T ss_dssp EECTTCEEEEEESS
T ss_pred EECCCCEEEEEeCC
Confidence 48999999999995
No 89
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=34.07 E-value=29 Score=27.27 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.2
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033021 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
++.+++-|+.|++||+|++|.-+
T Consensus 268 ~~~~v~~Gd~V~~G~~la~I~dp 290 (331)
T 3na6_A 268 FEIMIDLGEPVQEGDLVARVWSP 290 (331)
T ss_dssp EEESSCTTCEECTTCEEEEEECS
T ss_pred EEEcCCCCCEEcCCCEEEEEEcC
Confidence 34568899999999999999854
No 90
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=33.76 E-value=52 Score=22.51 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=27.0
Q ss_pred CeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033021 30 DGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 30 ~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+-+.-|+... ....+|.-..++ ..+.|+.|++|+.+++++..
T Consensus 21 ~~~~vGit~~--a~~~lG~i~~v~-lp~vG~~V~~g~~l~~vEs~ 62 (128)
T 1onl_A 21 DTVLVGITDY--AQDALGDVVYVE-LPEVGRVVEKGEAVAVVESV 62 (128)
T ss_dssp TEEEEEECHH--HHHHHCSEEEEE-CBCTTCEECTTCEEEEEEES
T ss_pred CEEEEEeehH--HhhcCCCceEEE-ecCCCCEEeCCCEEEEEEEc
Confidence 4556676332 234555312332 35899999999999999853
No 91
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=33.41 E-value=1.1e+02 Score=20.81 Aligned_cols=26 Identities=15% Similarity=-0.001 Sum_probs=23.4
Q ss_pred EEEEEEechhhHHHHHHHHHHHHHHH
Q 033021 67 QFGKVSGRAHSIVIAERVVLNFMQRM 92 (129)
Q Consensus 67 ~i~~i~G~a~~ll~~ER~~LN~L~~~ 92 (129)
+-+++.|+.+++-.|...+...|+++
T Consensus 118 ~~vtI~G~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 118 VPFVFVGTKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 56899999999999999999988875
No 92
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=33.34 E-value=53 Score=22.59 Aligned_cols=42 Identities=26% Similarity=0.244 Sum_probs=27.1
Q ss_pred CCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEe
Q 033021 29 EDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 29 e~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.+-+.-|+... ....+|.=..++ ..+.|+.|++|++++.++.
T Consensus 20 ~~~~~vGitd~--a~~~lG~i~~v~-lp~~G~~V~~g~~l~~vEs 61 (131)
T 1hpc_A 20 GSVATIGITDH--AQDHLGEVVFVE-LPEPGVSVTKGKGFGAVES 61 (131)
T ss_dssp TTEEEEEECHH--HHHHHCSEEEEE-CCCTTCEECBTSEEEEEEE
T ss_pred CCEEEEEEehh--hcccCCCceEEE-ecCCCCEEeCCCEEEEEEe
Confidence 34456676433 235555312232 3599999999999999985
No 93
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=33.28 E-value=31 Score=27.61 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=28.5
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033021 21 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 21 ~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
....|.|+.+|+|. +..+..|+.+.+|++|+++...
T Consensus 206 ~~~~I~AP~~G~V~------------------~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 206 TRFTLKAPIDGVIT------------------AFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp CEEEEECSSSEEEE------------------ECCCCTTCEECTTSCSEEEEEE
T ss_pred ccEEEEcCCCeEEE------------------EEEcCCCCEECCCCcEEEEeCC
Confidence 45678888888886 2457799999999999998743
No 94
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=32.79 E-value=98 Score=23.36 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=47.4
Q ss_pred CCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHH-HHHHHHHHHhHH
Q 033021 18 DMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAER-VVLNFMQRMSGI 95 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER-~~LN~L~~~SGI 95 (129)
..++...+..+++-.=...++...+|+..|-...++....+. .+.+.+.+.|+--.+|.+-+ -.|+-||++...
T Consensus 49 ~k~a~V~v~~~~~~~~~a~~~L~~ll~~m~~~~~i~~~~~~~----~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~ 123 (225)
T 3gku_A 49 SKPAIIRAKRKETLQDKAIEFLEQVFDAMNMAVDISVEYNET----EKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSL 123 (225)
T ss_dssp CBCEEEEEEECCCHHHHHHHHHHHHHHHTTCCCEEEEEEETT----TTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHH
T ss_pred CceEEEEEEeccchHHHHHHHHHHHHHHcCCCeEEEEEEecC----CCEEEEEEcCCccceeecCCCeEhHHHHHHHHH
Confidence 445666666665533234577888888888555555433221 13578889998777877665 567888887643
No 95
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=32.66 E-value=24 Score=28.50 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=16.3
Q ss_pred EEecCCCCeeecCCEEEE
Q 033021 53 EWSLKDGDHVHKGLQFGK 70 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~ 70 (129)
..+++||+.|++|++|++
T Consensus 62 ~l~v~~g~~V~~g~~la~ 79 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAE 79 (352)
T ss_dssp EESCCTTCEECTTCEEEE
T ss_pred EEEecCCCEEcCCCEEEE
Confidence 458999999999999998
No 96
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=31.03 E-value=95 Score=19.10 Aligned_cols=51 Identities=12% Similarity=0.142 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHH
Q 033021 36 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 89 (129)
Q Consensus 36 ~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L 89 (129)
=.....+-+..+ +++.. -+||..-...+..+.|.|+..++..|-..+..++
T Consensus 33 G~~Ik~I~~~tg--a~I~i-~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~ 83 (85)
T 2opv_A 33 GETIKQLQERAG--VKMIL-IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDIL 83 (85)
T ss_dssp THHHHHHHHHHT--CEEEE-CSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC--CEEEE-cCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHh
Confidence 356777777777 56643 3466543456788999999999999988887765
No 97
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=30.56 E-value=34 Score=27.41 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=19.2
Q ss_pred EEEecCCCCeeecCCEEEEEEe
Q 033021 52 VEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G 73 (129)
++..++-|+.|++||+|.+|.=
T Consensus 301 ~~~~v~lGd~V~kG~~la~I~d 322 (368)
T 3fmc_A 301 VEYLGKVGVPMKATDPLVNLLR 322 (368)
T ss_dssp EEECSCTTCCBCTTCEEEEEEC
T ss_pred EEEeCCCCCEeCCCCEEEEEEc
Confidence 4567889999999999999985
No 98
>3cim_A Carbon dioxide-concentrating mechanism protein CC 2; hexamer, structural protein; 1.30A {Synechocystis SP} PDB: 3dnc_A 3dn9_A
Probab=30.34 E-value=1e+02 Score=20.19 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=40.3
Q ss_pred eEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHH
Q 033021 31 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 90 (129)
Q Consensus 31 gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~ 90 (129)
++..++.-+...++..+ +++..+-. .-+|...+.++|+..++-.+=+...+..+
T Consensus 12 g~~~~I~AAD~a~KAA~--V~lv~~~~----~~~G~~~vii~GdVsaV~~Av~ag~~~~~ 65 (99)
T 3cim_A 12 GFPAVVEAADSMVKAAR--VTLVGYEK----IGSGRVTVIVRGDVSEVQASVSAGIEAAN 65 (99)
T ss_dssp SHHHHHHHHHHHHHHSS--EEEEEEEE----EETTEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCC--cEEEEEEe----cCCcEEEEEEEEcHHHHHHHHHHHHHHHh
Confidence 57778888999999876 66543332 67889999999999988777665555444
No 99
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=29.94 E-value=1.3e+02 Score=20.29 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHH
Q 033021 37 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 90 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~ 90 (129)
..+.++-+..+ +++++ .+|+..-...+.++.+.|+..++..+-..++.++.
T Consensus 22 ~~Ik~i~~~tg--~~I~i-~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~ 72 (164)
T 2jvz_A 22 ETIKQLQERAG--VKMIL-IQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 72 (164)
T ss_dssp HHHHHHHHTSC--SEEEE-CCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--CeEEE-ecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 56677777776 66643 34553323346789999999999988888877765
No 100
>3bbo_O Ribosomal protein L16; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=28.84 E-value=26 Score=24.53 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.8
Q ss_pred eeecCCEEEEEEech
Q 033021 61 HVHKGLQFGKVSGRA 75 (129)
Q Consensus 61 ~v~~g~~i~~i~G~a 75 (129)
.|+||++|+|+.|-.
T Consensus 96 ~Vk~G~ilfEi~gv~ 110 (135)
T 3bbo_O 96 VVKPGRILYEISGVA 110 (135)
T ss_dssp CCCTTCEEEEECSSC
T ss_pred EECCCCEEEEEecCC
Confidence 489999999999943
No 101
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=27.76 E-value=1.1e+02 Score=24.04 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=37.7
Q ss_pred EEEEeeCCeEEEcHHHHHHHHhhcCCCc-EEEEecCCCCeeec----CCEEEEEEechhhHHHHHHHHHHHHH
Q 033021 23 AHFLAKEDGIIAGIALAEMIFHEVDPSL-KVEWSLKDGDHVHK----GLQFGKVSGRAHSIVIAERVVLNFMQ 90 (129)
Q Consensus 23 a~i~are~gvvaG~~~~~~~~~~~~~~~-~v~~~~~dG~~v~~----g~~i~~i~G~a~~ll~~ER~~LN~L~ 90 (129)
..+.+..+|++..++..+++... |++ .+.++.+.|+.+.+ ++.+..+.....+.-.+++.+..+++
T Consensus 339 ~~~~~~~~G~~~~i~g~~~~~~~--p~v~~~~~~~~~G~~v~~~~~~~~~~g~v~~~g~~~~ea~~~~~~~~~ 409 (425)
T 3vot_A 339 YIIPVQGSGTFEKIDGLEEVKQR--QEVKRVFQFMRRGAKILPYPHFSGYPGFILTSHHSYEECEAFYRELDD 409 (425)
T ss_dssp EECCCCSCEEEEEEETHHHHHTC--TTEEEEEECCCTTCEECCTTCCCCCSEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEcCCCCeEEEecCCHHHHhcC--CCeEEEEEEecCCCEeCCCCCCCCeEEEEEEEECCHHHHHHHHHHHhC
Confidence 33445677887655444444432 344 67788999999975 34444443334455555555555444
No 102
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=27.39 E-value=1.4e+02 Score=20.03 Aligned_cols=50 Identities=14% Similarity=0.340 Sum_probs=36.7
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHH
Q 033021 37 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 91 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~ 91 (129)
.....+-+..+ +++.+.-.+. ...+..+.+.|+..++..|.+.+..+++.
T Consensus 111 ~~I~~i~~~tg--~~I~i~~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 111 EMIKKIQNDAG--VRIQFKQDDG---TGPEKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHTC--CEEEECCCCT---TSSEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHC--CeEEEeCCCC---CCCcEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 56777777777 5665433322 23468999999999999999999988764
No 103
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=27.13 E-value=32 Score=21.61 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=17.8
Q ss_pred EecCCCCeeecCCEEEEEEec
Q 033021 54 WSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+..-||+.|.+|++|++=+|.
T Consensus 23 vK~~~Gq~V~aG~IivrQRgt 43 (69)
T 2ftc_O 23 IKKMEGHYVHAGNIIATQRHF 43 (69)
T ss_pred EEecCCeEecCCeEEEecCCC
Confidence 467799999999999987774
No 104
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=26.68 E-value=77 Score=21.49 Aligned_cols=14 Identities=29% Similarity=0.397 Sum_probs=12.5
Q ss_pred eeecCCEEEEEEec
Q 033021 61 HVHKGLQFGKVSGR 74 (129)
Q Consensus 61 ~v~~g~~i~~i~G~ 74 (129)
.|+||++|+|+.|+
T Consensus 83 ~Vk~G~ilfEi~g~ 96 (118)
T 2ftc_I 83 PVKAGRLVVEMGGR 96 (118)
T ss_pred EECCCCEEEEEecc
Confidence 48999999999994
No 105
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=26.37 E-value=11 Score=24.46 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=12.4
Q ss_pred ecCCCCeeecCCEEE
Q 033021 55 SLKDGDHVHKGLQFG 69 (129)
Q Consensus 55 ~~~dG~~v~~g~~i~ 69 (129)
.+.||+.|++|+.|.
T Consensus 68 ~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 68 NVFEGERVERGDVIS 82 (84)
T ss_dssp SSCTTEEECBSCSSB
T ss_pred EeCCCCEECCCCCcc
Confidence 588999999998753
No 106
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=25.70 E-value=35 Score=24.72 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=15.6
Q ss_pred ecCCCCeeecCCEEEEE
Q 033021 55 SLKDGDHVHKGLQFGKV 71 (129)
Q Consensus 55 ~~~dG~~v~~g~~i~~i 71 (129)
.++.|+.|++||+|..+
T Consensus 86 ~V~~G~~V~~Gq~IG~v 102 (182)
T 3it5_A 86 QVSNGQQVSADTKLGVY 102 (182)
T ss_dssp CCCTTCEECTTCEEEEE
T ss_pred ccCCCCEEcCCCEEEee
Confidence 48899999999999987
No 107
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=25.40 E-value=1.2e+02 Score=18.59 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCeeecC--CEEEEEEechhhHHHHHHHHHHHHHH
Q 033021 37 ALAEMIFHEVDPSLKVEWSLKDGDHVHKG--LQFGKVSGRAHSIVIAERVVLNFMQR 91 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~v~~g--~~i~~i~G~a~~ll~~ER~~LN~L~~ 91 (129)
.....+-+..+ +++.+. ++++. .|| +..+.|.|+..++..|.+.+.+++..
T Consensus 23 ~~Ik~I~~~tg--a~I~I~-~~~~~-~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 23 KTLVEYQELTG--ARIQIS-KKGEF-LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp HHHHHHHHHHC--CEEEEC-CTTCB-STTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhC--CEEEEc-cCCCC-CCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 55666667776 566432 33332 333 68999999999999999999988764
No 108
>3ssr_B Carbon dioxide concentrating mechanism protein; bacterial microcompartment fold, shell forming, pore forming structural protein; 1.60A {Thermosynechococcus elongatus} PDB: 3sss_A
Probab=25.38 E-value=1.3e+02 Score=20.22 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=39.2
Q ss_pred eEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHH
Q 033021 31 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 90 (129)
Q Consensus 31 gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~ 90 (129)
++.+++.-+...++..+ +++..+ +.+.+|-..+.++|+..++-.+-....+..+
T Consensus 12 g~~~aI~AADam~KAA~--V~lv~~----~~~~~G~~~v~i~GDVsaV~aAv~ag~~aa~ 65 (110)
T 3ssr_B 12 GFPAVVEAADAMVKAAR--VTLVGY----EKIGSGRVTVIVRGDVSEVQASVAAGVDSAK 65 (110)
T ss_dssp SHHHHHHHHHHHHHHSS--EEEEEE----EEEETTEEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhCC--cEEEEE----EecCCCEEEEEEEEcHHHHHHHHHHHHHHHH
Confidence 56678888999999876 665433 3456788999999999998877555544433
No 109
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Probab=25.12 E-value=79 Score=22.62 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=14.8
Q ss_pred CeeecCCEEEEEEechhh
Q 033021 60 DHVHKGLQFGKVSGRAHS 77 (129)
Q Consensus 60 ~~v~~g~~i~~i~G~a~~ 77 (129)
..|+||++|+++.|+..+
T Consensus 96 ArVk~G~ilfei~~~~v~ 113 (151)
T 2pa2_A 96 ARVHIGQVIMSIRTKLQN 113 (151)
T ss_dssp EEECTTBEEEEEEECGGG
T ss_pred EEECCCCEEEEEECCCCC
Confidence 468999999999996443
No 110
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=25.05 E-value=95 Score=21.27 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=26.6
Q ss_pred CeEEEcH-HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033021 30 DGIIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 30 ~gvvaG~-~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+-+.-|+ +.+...+ |.=..|+ +-+-|+.+++|+.++.++..
T Consensus 17 ~~~~vGITd~Aq~~l---Gdiv~ve-lp~vG~~v~~G~~~~~VES~ 58 (125)
T 3klr_A 17 GVGTVGISNFAQEAL---GDVVYCS-LPEVGTKLNKQEEFGALESV 58 (125)
T ss_dssp TEEEEEECHHHHHHH---CSEEEEE-CCCTTCEECTTCEEEEEEES
T ss_pred CEEEEeeCHHHHhhC---CCeEEEE-eCCCCCEEcCCCEEEEEEEc
Confidence 3455664 4555444 4213333 45789999999999999853
No 111
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=24.54 E-value=1.2e+02 Score=18.12 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHH
Q 033021 36 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 90 (129)
Q Consensus 36 ~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~ 90 (129)
-....++-+..+ ++++.. ++| ..+.++++.|+.+++..|-..+++.|.
T Consensus 24 G~~Ik~I~~~tg--a~I~i~-~~~----~~er~v~I~G~~~~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 24 GESVKKMREESG--ARINIS-EGN----CPERIITLAGPTNAIFKAFAMIIDKLE 71 (73)
T ss_dssp GHHHHHHHHHHC--CEEEEC-SSC----CSEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHC--CEEEEe-cCC----CCcEEEEEEeCHHHHHHHHHHHHHHHh
Confidence 466777777777 566543 333 247899999999999999988888764
No 112
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=23.70 E-value=1.2e+02 Score=17.92 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCeeecC--CEEEEEEechhhHHHHHHHHHHHH
Q 033021 37 ALAEMIFHEVDPSLKVEWSLKDGDHVHKG--LQFGKVSGRAHSIVIAERVVLNFM 89 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~v~~g--~~i~~i~G~a~~ll~~ER~~LN~L 89 (129)
.....+-+..+ +++.+. ++++. .+| +..+.+.|+..++..|...+..++
T Consensus 23 ~~Ik~I~~~tg--a~I~i~-~~~~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 73 (76)
T 1dtj_A 23 KTLVEYQELTG--ARIQIS-KKGEF-LPGTRNRRVTITGSPAATQAAQYLISQRV 73 (76)
T ss_dssp HHHHHHHHHHC--CEEEEC-CTTCC-STTCCEEEEEEEESHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhC--CEEEEC-cCCCC-CCCCceeEEEEEeCHHHHHHHHHHHHHHH
Confidence 56667777777 566433 23222 233 689999999999999988887765
No 113
>1vq8_H 50S ribosomal protein L10E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.41.4.1 PDB: 1vq4_H* 1vq5_H* 1vq6_H* 1vq7_H* 1s72_H* 1vq9_H* 1vqk_H* 1vql_H* 1vqm_H* 1vqn_H* 1vqo_H* 1vqp_H* 2otj_H* 2otl_H* 2qa4_H* 2qex_H* 1yhq_H* 1yi2_H* 1yij_H* 1yit_H* ...
Probab=23.58 E-value=74 Score=23.25 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=14.8
Q ss_pred CCEEEEEEEeeCCeEEEc
Q 033021 18 DMEVEAHFLAKEDGIIAG 35 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG 35 (129)
+-+....+.+-|.+-+.-
T Consensus 42 ~fp~~~~L~a~E~~~Its 59 (171)
T 1vq8_H 42 DYPVQISLIVEETVQLRH 59 (171)
T ss_dssp TCSEEEEEEESSCEEEEH
T ss_pred cCCEEEEEEECcccccCH
Confidence 456788899999998876
No 114
>2a10_A CCMK4, carbon dioxide concentrating mechanism protein CC 4; cyclic hexamer, C6 point symmetry, carboxysome; 1.80A {Synechocystis SP} SCOP: d.58.56.1 PDB: 2a18_A
Probab=23.44 E-value=1.6e+02 Score=20.22 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=40.6
Q ss_pred EEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHH
Q 033021 32 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 91 (129)
Q Consensus 32 vvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~ 91 (129)
+.+++.-+...++..+ +++..+-. .-+|...+.++|+..++-.+=....+..++
T Consensus 15 ~~~~I~AADaavKAAn--Velv~~e~----~~~G~~~vii~GDVsaV~aAveag~~~~~~ 68 (125)
T 2a10_A 15 FPGILAAADAMVKAGR--ITIVGYIR----AGSARFTLNIRGDVQEVKTAMAAGIDAINR 68 (125)
T ss_dssp HHHHHHHHHHHHHHSS--CEEEEEEE----EETTEEEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcC--cEEEEEEe----cCCCEEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 6677888889998876 66654333 568899999999999888876666665543
No 115
>2a1b_A CCMK2, carbon dioxide concentrating mechanism protein CC 2; cyclic hexamer, C6 point symmetry, carboxysome; 2.90A {Synechocystis SP} SCOP: d.58.56.1
Probab=22.89 E-value=1.3e+02 Score=20.30 Aligned_cols=54 Identities=13% Similarity=0.088 Sum_probs=40.5
Q ss_pred eEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHH
Q 033021 31 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 90 (129)
Q Consensus 31 gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~ 90 (129)
++..++.-+...++..+ +++..+-. +-+|...+.++|+..++-.+=+...+..+
T Consensus 12 g~~~~I~AAD~avKAAn--Velv~~~~----~~~G~~~vii~GDVsaV~aAveag~~~~~ 65 (116)
T 2a1b_A 12 GFPAVVEAADSMVKAAR--VTLVGYEK----IGSGRVTVIVRGDVSGVQASVSAGIEAAN 65 (116)
T ss_dssp SSHHHHHHHHHHHHHSS--CEEEEEEE----CSSSEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCC--cEEEEEEe----cCCcEEEEEEEEcHHHHHHHHHHHHHHHh
Confidence 67788899999999886 66654333 56778999999999988877666555544
No 116
>3n79_A PDUT; FES cluster, BMC shell protein, carboxysome, electron T; 1.50A {Salmonella enterica subsp} PDB: 3vcd_A 4ddf_A 3pac_A
Probab=22.74 E-value=1.4e+02 Score=21.84 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=43.6
Q ss_pred eEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHH
Q 033021 31 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 91 (129)
Q Consensus 31 gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~ 91 (129)
++..++.-+...++..+ +++.. -+.+-+|...+.+.|+..++-.+-...++..++
T Consensus 12 ~~~~~i~aaD~a~Kaa~--V~l~~----~~~~~~G~~~~ii~Gdv~aV~~Av~a~~~~~~~ 66 (192)
T 3n79_A 12 SIAKGMELGDAMLKSAN--VDLLV----SKTISPGKFLLMLGGDIGAIQQAIETGTSQAGE 66 (192)
T ss_dssp CHHHHHHHHHHHHHHSS--CEEEE----EEEETTTEEEEEEEECHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhccCC--cEEEE----EEeecCceEEEEEEccHHHHHHHHHHHHHHhhc
Confidence 67788999999999876 66543 225678999999999999999988887776654
No 117
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=22.40 E-value=1.1e+02 Score=21.26 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=25.7
Q ss_pred EEEcH-HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEe
Q 033021 32 IIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 32 vvaG~-~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
+.-|+ +.+...+-.. ..|+ +-+-|+.+++|+.++.++.
T Consensus 36 ~~VGITd~Aq~~lGdi---v~Ve-lP~vG~~v~~G~~~~~VES 74 (137)
T 3tzu_A 36 VRVGITSVAVEALGDL---VFVQ-LPEVGETVSAGESCGEVES 74 (137)
T ss_dssp EEEEECHHHHHHHCSE---EEEE-CCCTTCEECTTSEEEEEEE
T ss_pred EEEeeCHHHHhhcCCe---EEEE-cCCCCCEEeCCCEEEEEEe
Confidence 45664 5555544322 3333 4578999999999999986
No 118
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=22.39 E-value=1.1e+02 Score=21.53 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=27.5
Q ss_pred CCeEEEcH-HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033021 29 EDGIIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 29 e~gvvaG~-~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+-+.-|+ +.+...+ |. +.+--+-+-|+.+++|+.++.|+..
T Consensus 38 g~~~~VGITd~Aq~~L---Gd-IvfVelP~vG~~v~~Gd~~~~VES~ 80 (143)
T 3mxu_A 38 GQVVTVGITDYAQEQL---GD-LVFIDLPQNGTKLSKGDAAAVVESV 80 (143)
T ss_dssp TTEEEEEECHHHHHHH---CS-EEEEECCCTTCEECTTCEEEEEEES
T ss_pred CCEEEEeeCHHHHhhc---CC-eEEEEcCCCCCEeeCCCEEEEEEec
Confidence 34456674 5555444 42 3332345789999999999999863
No 119
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=21.96 E-value=2e+02 Score=19.73 Aligned_cols=51 Identities=10% Similarity=0.354 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHHH
Q 033021 37 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRM 92 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~ 92 (129)
..+.++-+..+ +++++.-.++. ..+.++.|.|+.+++..+...+.+++...
T Consensus 23 ~~Ik~i~~~tg--~~I~i~~~~~~---~~~r~v~I~G~~~~v~~A~~~I~~~~~~~ 73 (174)
T 1j4w_A 23 EMIKKIQNDAG--VRIQFKPDDGT---TPERIAQITGPPDRAQHAAEIITDLLRSV 73 (174)
T ss_dssp HHHHHHHHHHC--CEEEEECCTTS---CSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC--CEEEEecCCCC---CCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 56677777777 56655433321 34678899999999999999988888654
No 120
>4axj_A EUTM, ethanolamine carboxysome structural protein; bacterial microcompartment; 1.62A {Clostridium difficile}
Probab=21.48 E-value=1.9e+02 Score=19.26 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=37.6
Q ss_pred eEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHH
Q 033021 31 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNF 88 (129)
Q Consensus 31 gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~ 88 (129)
++.+++.-+...++..+ +++..+-+ +.+|...+.++|+..++-.+-....+.
T Consensus 15 g~~~aI~AADam~KaA~--V~lv~~~~----~~~G~~~v~i~GDVsaV~aAv~ag~~a 66 (104)
T 4axj_A 15 GLVGAIEAADAMVKAAN--VQLVGKEQ----VGGGLVTVMVRGDVGAVKAATDAGAAA 66 (104)
T ss_dssp SHHHHHHHHHHHHHHSS--CEEEEEEE----CSTTEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhCC--cEEEEEEe----cCCeEEEEEEEEcHHHHHHHHHHHHHH
Confidence 56778888999999886 66654322 445778999999999887775544443
No 121
>3bn4_A Carbon dioxide-concentrating mechanism protein CC 1; hexamer, structural protein; 2.00A {Synechocystis SP}
Probab=20.70 E-value=1.4e+02 Score=20.41 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=38.7
Q ss_pred eEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHH
Q 033021 31 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 89 (129)
Q Consensus 31 gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L 89 (129)
++.+|+.-+...++..+ +++..+-. +-+|...+.++|+..++-.+=+...+..
T Consensus 12 ~~~~aI~AADam~KAA~--V~Lv~~~~----~~~G~~~vii~GDVsAV~aAv~ag~~~a 64 (122)
T 3bn4_A 12 GFPAVVEAADSMVKAAR--VTLVGYEK----IGSGRVTVIVRGDVSEVQASVTAGIENI 64 (122)
T ss_dssp SHHHHHHHHHHHHHHSS--CEEEEEEE----EETTEEEEEEEECHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHhhCC--cEEEEEEc----cCCcEEEEEEEEcHHHHHHHHHHHHHHH
Confidence 45677888889998876 66654332 6788999999999998877755444433
No 122
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=20.69 E-value=1.6e+02 Score=18.31 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHH
Q 033021 37 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 91 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~ 91 (129)
..+.++-+..+ +++++.- +.+ ...+..+.|.|+.+++..|...+..++..
T Consensus 35 ~~Ik~I~~~tg--a~I~I~~-~~~--g~~~r~v~I~G~~e~v~~A~~~I~~~i~~ 84 (92)
T 1x4n_A 35 EQISRIQQESG--CKIQIAP-DSG--GLPERSCMLTGTPESVQSAKRLLDQIVEK 84 (92)
T ss_dssp HHHHHHHHHSC--CEEEECS-CCT--TCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC--CEEEEcC-CCC--CCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 56777777777 5665432 211 12468999999999999999988888764
No 123
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=20.19 E-value=2.2e+02 Score=19.54 Aligned_cols=52 Identities=19% Similarity=0.136 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHH
Q 033021 36 IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 90 (129)
Q Consensus 36 ~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~ 90 (129)
=..+.++-+..+ +.+.+.- +.+.-...+.+++|.|+..++..|...+++.+.
T Consensus 123 G~~Ik~i~~~tg--a~I~i~~-~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 174 (178)
T 2anr_A 123 GATVKAIMEQSG--AWVQLSQ-KPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQ 174 (178)
T ss_dssp GHHHHHHHHHSS--CEEEECC-CC----CCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHC--CEEEEeC-CCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHH
Confidence 356777777777 5665432 222223457899999999999999988888764
Done!