BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033022
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 161 bits (407), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 71/103 (68%), Positives = 87/103 (84%)
Query: 1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
MD P GYR NVG+CL+N+D +IF ASRL++P AWQMPQGGI++GEDP+ AA+RELREET
Sbjct: 6 MDSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREET 65
Query: 61 GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
G+ SAE+IAEVP WLTYDFPP V+ K+N WG +W GQAQKW+
Sbjct: 66 GVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWF 108
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 7 GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
GYRPNVG+ + N Q+ A R +WQ PQGGI GE + A REL EE G+ +
Sbjct: 6 GYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKD 64
Query: 67 --IIAEVPNWLTYDFPPAV---KTKVNRLWGGEWHGQAQKWY 103
I+A NWL Y P + TK + GQ QKW+
Sbjct: 65 VRILASTRNWLRYKLPKRLVRWDTKPVCI------GQKQKWF 100
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 7 GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
GYRPNVG+ + N Q+ A R +WQ PQGGI GE + A R L EE G+ +
Sbjct: 6 GYRPNVGIVICNRQGQVMWARRFG-QHSWQFPQGGINPGESAEQAMYRALFEEVGLSRKD 64
Query: 67 --IIAEVPNWLTYDFPPAV---KTKVNRLWGGEWHGQAQKWY 103
I+A NWL Y P + TK + GQ QKW+
Sbjct: 65 VRILASTRNWLRYKLPKRLVRWDTKPVCI------GQKQKWF 100
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 13 GVCLINSDSQIFVASRLNVPGA------WQMPQGGIEDGEDPKLAAMRELREETGI 62
GV L+N I + +PG W +P G +EDGE+P+ AA+RE EETG+
Sbjct: 17 GVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL 72
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella
Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella
Henselae
Length = 158
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 12 VGVCLINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
V L++ D+++ + R ++ G W+ P G +E GE P+ + +REL EE G+
Sbjct: 32 VACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGV 85
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 12 VGVCLINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
LI+ D ++ +A R ++ G W+ P G +E GE P+ A +REL EE G+
Sbjct: 11 TAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGV 64
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase
1, Mg-F Complex
Length = 194
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 7 GYRPNVGVCLINSDSQ--IFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
GY+ S+S+ + + S P W +P GG+E E+P +AA+RE+ EE G+
Sbjct: 38 GYKKRAACLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV 95
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 16 LINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
+ D +I V R ++ G W+ P G IE+GE P+ A REL EE GI
Sbjct: 28 FLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGI 77
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From
Aquifex Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI--- 67
+ G L + + + NV W P+G IE GE P+ A+RE+ EETG V EI
Sbjct: 6 SAGGVLFKDGEVLLIKTPSNV---WSFPKGNIEPGEKPEETAVREVWEETG-VKGEILDY 61
Query: 68 IAEVPNWLT 76
I E+ W T
Sbjct: 62 IGEIHYWYT 70
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
++P V V + +FV G ++P G IE GEDP AA REL EETG+
Sbjct: 33 HKPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEETGL 89
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal
Complex, Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound
Holo Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound
Holo Form
Length = 129
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 12 VGVCLI-NSDSQIFVASRL---NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
+ V +I N +++IF+ R ++ + P G IE GE P+ A +REL+EE GI
Sbjct: 6 IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65
Query: 68 IAEVPNWLTYDFP 80
+ L Y+FP
Sbjct: 66 --SLFEKLEYEFP 76
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
+ P+V + N ++ PG W +P G IE GE P+ A +RE+ EETG+
Sbjct: 20 FXPSVAAVIKNEQGELL----FQYPGGEYWSLPAGAIEPGETPEEAVIREVWEETGL 72
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 9 RP-NVGVCLINSDSQ-IFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI-VSA 65
RP ++ V + D++ + + R + P WQ G +E+GE AAMRE++EE I V A
Sbjct: 8 RPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVA 67
Query: 66 EIIAEVPNWLTYDF 79
E + + T +F
Sbjct: 68 EQLTLIDCQRTVEF 81
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
++P V V + +FV G ++P G IE GEDP AA REL E+TG+
Sbjct: 33 HKPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGL 89
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREETGI 62
++P V V + +FV G ++P G IE GEDP AA R+L EETG+
Sbjct: 33 HKPAVAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRQLAEETGL 89
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 8 YRPNVGV-CLINSDSQIFVASR-LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
++P+V V C+++++ + V +N W P G +E E AA REL EETGI +
Sbjct: 2 FKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQ 61
Query: 66 -EIIAEVPNWLTYDFPPAVK 84
+ + W+ D P ++
Sbjct: 62 PQHFIRMHQWIAPDKTPFLR 81
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 35 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNW 74
++P G +++GE P+ AA RELREE G AE + +P++
Sbjct: 70 LEVPAGKVDEGETPEAAARRELREEVG-AEAETLIPLPSF 108
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 36 QMPQGGIEDGEDPKLAAMRELREETG 61
+ P G I+DGE P+ AA+REL EETG
Sbjct: 80 EFPAGLIDDGETPEAAALRELEEETG 105
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 36 QMPQGGIEDGEDPKLAAMRELREETG 61
+ P G I+DGE P+ AA+REL EETG
Sbjct: 81 EFPAGLIDDGETPEAAALRELEEETG 106
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 36 QMPQGGIEDGEDPKLAAMRELREETG 61
+ P G I+DGE P+ AA+REL EETG
Sbjct: 93 EFPAGLIDDGETPEAAALRELEEETG 118
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 36 QMPQGGIEDGEDPKLAAMRELREETG 61
+ P G I+DGE P+ AA+REL EETG
Sbjct: 93 EFPAGLIDDGETPEAAALRELEEETG 118
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 36 QMPQGGIEDGEDPKLAAMRELREETG 61
+ P G I+DGE P+ AA+REL EETG
Sbjct: 95 EFPAGLIDDGETPEAAALRELEEETG 120
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 6 SGYRPNVGVCLINSD--SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
G++ S+ ++ + S P W +P GG+E E+P AA+RE+ EE G+
Sbjct: 7 EGFKKRAACLCFRSEQEDEVLLVSSSRYPDQWIVPGGGMEPEEEPGGAAVREVYEEAGV 65
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol
Polyphosphate Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol
Polyphosphate Phosphohydrolase 3-Alpha
Length = 136
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 13 GVCLI---NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
CL + ++ + S P W +P GG+E E+P AA+RE+ EE G+
Sbjct: 5 AACLCFRSEREDEVLLVSSSRYPDRWIVPGGGMEPEEEPGGAAVREVYEEAGV 57
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 11 NVGVCLINSDSQIFVASR---LNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
V +I D +I +A R + G W+ G +E E + A +RELREE GI
Sbjct: 10 EVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGI 64
>pdb|3N77|A Chain A, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
pdb|3N77|B Chain B, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
Length = 144
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 6 SGYRPNVGVC-LINSDSQIFVA----SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
+ R VC LI +D + +R PG W + GG+E GE + A RE+REE
Sbjct: 2 NAMRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREEL 61
Query: 61 GIVSAEIIAEVPNWLTYD 78
G I++++ W D
Sbjct: 62 G--EQLILSDITPWTFRD 77
>pdb|3OGA|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
pdb|3OGA|B Chain B, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
Length = 165
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 9 RPNVGVC-LINSDSQIFVA----SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
R VC LI +D + +R PG W + GG+E GE + A RE+REE G
Sbjct: 26 RQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELG-- 83
Query: 64 SAEIIAEVPNWLTYD 78
I++++ W D
Sbjct: 84 EQLILSDITPWTFRD 98
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 13 GVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
GV + N + RL G + P G +E E P A RE EETGIV
Sbjct: 6 GVLVENGKVLLVKHKRL---GVYIYPGGHVEHNETPIEAVKREFEEETGIV 53
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 32 PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLW 91
P W P+G ++ GED AA+RE +EE I ++ T + K K + W
Sbjct: 29 PHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYW 88
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 22 QIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
++ V ++NVP P G +E GE AA+RE+ EETG+
Sbjct: 24 RVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL 66
>pdb|1MK1|A Chain A, Structure Of The Mt-adprase In Complex With Adpr, A Nudix
Enzyme
pdb|1MP2|A Chain A, Structure Of Mt-Adprase (Apoenzyme), A Nudix Hydrolase
From Mycobacterium Tuberculosis
pdb|1MQE|A Chain A, Structure Of The Mt-adprase In Complex With Gadolidium And
Adp-ribose, A Nudix Enzyme
pdb|1MQW|A Chain A, Structure Of The Mt-adprase In Complex With Three Mn2+
Ions And Ampcpr, A Nudix Enzyme
pdb|1MR2|A Chain A, Structure Of The Mt-Adprase In Complex With 1 Mn2+ Ion And
Amp-Cp (A Inhibitor), A Nudix Enzyme
Length = 207
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 35 WQMPQGGIE-DGEDPKLAAMRELREETGI 62
W++P G ++ GE P L A RELREE G+
Sbjct: 72 WELPAGLLDVAGEPPHLTAARELREEVGL 100
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 12 VGVCLINSDSQIFVA-SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI-VSAEIIA 69
+ V L D + + ++ G+W +P G +E GE A RE++EE G+ E +
Sbjct: 24 LAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLL 83
Query: 70 EV----PNWLTYDF 79
V P+W+ + F
Sbjct: 84 SVEERGPSWVRFVF 97
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAE 70
G + N+ ++ + + G W P+G E GE + AA+RE+ EETG+ + ++
Sbjct: 4 GAGGVVFNAKREVLLLR--DRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPL 61
Query: 71 VPNWLTYDFPPAVKTKVN 88
P Y P V+ +V+
Sbjct: 62 YPT--RYVNPKGVEREVH 77
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 4 LPSGYRPNVGV--CLINSDSQIFVASRLNVPGA--WQMPQGGIEDGEDPKLAAMRELREE 59
L + ++PN L+ + I + R PG W +P G +E E A +REL EE
Sbjct: 200 LKAPFKPNFVTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEE 259
Query: 60 TGI 62
T I
Sbjct: 260 TNI 262
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 35 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
W P+G +E GED A+RE +EE GI + ++
Sbjct: 38 WTPPKGHVEPGEDDLETALRETQEEAGIEAGQL 70
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAE 70
G + N+ ++ + + G W P+G E GE + AA+RE+ E+TG+ + ++
Sbjct: 4 GAGGVVFNAKREVLLLR--DRMGFWVFPKGHPEPGESLEEAAVREVWEQTGVRAEVLLPL 61
Query: 71 VPNWLTYDFPPAVKTKVN 88
P Y P V+ +V+
Sbjct: 62 YPT--RYVNPKGVEREVH 77
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68
G W +P G +++ E + AA REL EET + +I
Sbjct: 67 GKWAVPGGFVDENESAEQAAERELEEETSLTDIPLI 102
>pdb|3FCM|A Chain A, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
pdb|3FCM|B Chain B, Crystal Structure Of A Nudix Hydrolase From Clostridium
Perfringens
Length = 197
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 17 INSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
+N + F+ N+ +W G ++ +D A++EL+EETG+
Sbjct: 53 VNKERNKFLXIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGV 98
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 35 WQMPQGGIEDGEDPKLAAMRELREETG 61
W P+G +E E + AA+RE+ EETG
Sbjct: 51 WSWPKGKLEQNETHRHAAVREIGEETG 77
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 23 IFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64
+ V R + W+ P G E ED A+RE+ EETGI S
Sbjct: 42 LVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKS 83
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIV-SAEIIAEVPNWLTYDFPP 81
+W +P G + E + + +RE +EETG+V S E I ++ ++ D P
Sbjct: 70 NSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDP 119
>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
pdb|3F13|B Chain B, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
Length = 163
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 4 LPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
LPS + D + ASR G + +P G GE A +RE+REETG+
Sbjct: 11 LPSDLARRATAIIEMPDGVLVTASR---GGRYNLPGGKANRGELRSQALIREIREETGL 66
>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
pdb|4DYW|B Chain B, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
Length = 157
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 9 RPNVGV-CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
+P VG I D +I + R P G W +P G ++ E + A RE+ EE GI
Sbjct: 27 QPRVGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGI 83
>pdb|2W4E|A Chain A, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
pdb|2W4E|B Chain B, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
Length = 145
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 40 GGIEDGEDPKLAAMRELREETGIVSAE 66
GG+E GED AA REL EE G ++E
Sbjct: 39 GGVEKGEDLGAAAARELLEEVGGAASE 65
>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D.
Radiodurans
pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D.
Radiodurans Complexed With A Magnesium Ion
Length = 194
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 4 LPSGYRPNVGVCLIN-SDSQIFVASRLN-VP---GAWQMPQGGIEDGEDPKLAAMRELRE 58
LP R V V L +D ++ + R + +P G P G ++ GE P AA+RE +E
Sbjct: 30 LPHYRRAAVLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQE 89
Query: 59 ETGIVSAEI 67
E + A +
Sbjct: 90 EVALDPAAV 98
>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From
Escherichia Coli K12 At 2.20 A Resolution
Length = 269
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 8 YRPNVGVCLI----NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
Y P + C+I DS + + G + G +E GE + A RE+ EE+GI
Sbjct: 135 YYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVXEESGI 193
>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
pdb|2GB5|B Chain B, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
Length = 269
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 8 YRPNVGVCLI----NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
Y P + C+I DS + + G + G +E GE + A RE+ EE+GI
Sbjct: 135 YYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVXEESGI 193
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 35 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
W P+G +E GED A+R +EE GI + ++
Sbjct: 43 WTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 15 CLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMR----------ELREETGI 62
C+ ++++ + R P G W +P G E+ E A R E+RE +
Sbjct: 45 CIPEWENKVLLCKRAIAPYRGKWTLPAGFXENNETLVQGAARETLEEANARVEIRELYAV 104
Query: 63 VSAEIIAEV-----PNWLTYDFPPAVKTKVNRLWG 92
S I++V L DF P +++ RL+G
Sbjct: 105 YSLPHISQVYXLFRAKLLDLDFFPGIESLEVRLFG 139
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 27 SRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI--VSAEIIAEVPNWLT 76
SR N G W +P G + E K RE+ EETGI V +I +V LT
Sbjct: 31 SRTNA-GKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQVNFELT 81
>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+
pdb|3Q4I|B Chain B, Crystal Structure Of Cdp-Chase In Complex With Gd3+
Length = 205
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 6 SGYR-PNVGV--CLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61
+GY+ P V + + ++ +FV + + G W +P G + G P A +E+ EETG
Sbjct: 62 TGYQTPKVDIRAVVFQNEKLLFVKEKSD--GKWALPGGWADVGYTPTEVAAKEVFEETG 118
>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase
pdb|3Q1P|B Chain B, Crystal Structure Of Cdp-Chase
Length = 205
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 6 SGYR-PNVGV--CLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61
+GY+ P V + + ++ +FV + + G W +P G + G P A +E+ EETG
Sbjct: 62 TGYQTPKVDIRAVVFQNEKLLFVKEKSD--GKWALPGGWADVGYTPTEVAAKEVFEETG 118
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 29 LNVPGAWQMPQGGIEDGEDPKLAAMRELREE---TGIVSAEIIAEV----PNWLTYDFPP 81
L P A + G ++DG +R+ E T + +A I+ + NW++YD
Sbjct: 249 LRAPAAGKSNVGAVDDGS-MTYNRIRDYIVESRATTVYNATIVGDYCYSGSNWISYDDTQ 307
Query: 82 AVKTKVNRLWG 92
V+ KVN + G
Sbjct: 308 TVRNKVNYVKG 318
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
W P+G I+ E A+RE+ EETG
Sbjct: 121 SGWGFPKGKIDKDESDVDCAIREVYEETGF 150
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 29 LNVPGAWQMPQGGIEDGEDPKLAAMRELREE---TGIVSAEIIAEV----PNWLTYDFPP 81
L P A + G ++DG +R+ E T + +A I+ + NW++YD
Sbjct: 249 LRAPAAGKSNVGAVDDGS-MTYNRIRDYIVESRATTVYNATIVGDYCYSGSNWISYDDTQ 307
Query: 82 AVKTKVNRLWG 92
V+ KVN + G
Sbjct: 308 TVRNKVNYVKG 318
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGI 62
W P+G I+ E A+RE+ EETG
Sbjct: 126 SGWGFPKGKIDKDESDVDCAIREVYEETGF 155
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 9 RPNVGVC-LINSDSQIFVASRLNVPGAWQM--PQGGIEDGEDPKLAAMRELREETG 61
+PNV V +I D + + + A ++ P G +E GE A RE+ EETG
Sbjct: 6 KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETG 61
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 34 AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAE 70
+W P+G I E+ +RE++EE G + I +
Sbjct: 29 SWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDD 65
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
GA+ +P G IE E + A RE+ EE GI S EI
Sbjct: 41 GAYFLPGGEIEGTETKEEAIHREVLEELGI-SVEI 74
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
V C++ Q+ + + G W P G +E GE RE EETGI
Sbjct: 5 RVTNCIVVDHDQVLLLQKPR-RGWWVAPGGKMEAGESILETVKREYWEETGIT 56
>pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment
Of Dna Polymerase I From Thermus Aquaticus
Length = 539
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 14/62 (22%)
Query: 52 AMRELREETGIVSAEIIA------------EVPNWLTYDFPPAVKTK--VNRLWGGEWHG 97
A+R+L+EE G+++ ++ + P L Y P+ T V R +GGEW
Sbjct: 49 ALRDLKEERGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTE 108
Query: 98 QA 99
+A
Sbjct: 109 EA 110
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 12 VGVCLINSDSQIFVASRLNVP-----GAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
+CLI V + P + P G +E+ E + +RE+ EETG+
Sbjct: 10 TNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLT 66
>pdb|1IRY|A Chain A, Solution Structure Of The Hmth1, A Nucleotide Pool
Sanitization Enzyme
pdb|3ZR0|A Chain A, Crystal Structure Of Human Mth1 In Complex With
8-Oxo-Dgmp
pdb|3ZR0|B Chain B, Crystal Structure Of Human Mth1 In Complex With
8-Oxo-Dgmp
pdb|3ZR1|A Chain A, Crystal Structure Of Human Mth1
pdb|3ZR1|B Chain B, Crystal Structure Of Human Mth1
Length = 156
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
G W G +++GE + A REL+EE+G+
Sbjct: 30 GRWNGFGGKVQEGETIEDGARRELQEESGLT 60
>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
pdb|3Q93|B Chain B, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
Length = 176
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 33 GAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
G W G +++GE + A REL+EE+G+
Sbjct: 50 GRWNGFGGKVQEGETIEDGARRELQEESGLT 80
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 13 GVCLINSDSQIFVASRLNVPGAWQMPQGGIEDG 45
GV L + + F + P W +P GG++ G
Sbjct: 213 GVILYSDPADYFAPGVKSYPDGWNLPGGGVQRG 245
>pdb|3HMQ|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Nad
Synthetase (Nade) From Salmonella Typhimurium Lt2 In
Complex With Nad(+)
Length = 275
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 41 GIEDGEDPKLA------AMRELREETGIVSAEIIA 69
GI G+D LA A+ ELREETG + + IA
Sbjct: 46 GISGGQDSTLAGKLSQXAIAELREETGDNALQFIA 80
>pdb|1Q33|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt9
pdb|1QVJ|A Chain A, Structure Of Nudt9 Complexed With Ribose-5-Phosphate
Length = 292
Score = 25.4 bits (54), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 24 FVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
FVA + G W +P G ++ GE RE EE
Sbjct: 141 FVAIKRKDCGEWAIPGGXVDPGEKISATLKREFGEEA 177
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 25.4 bits (54), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 13 GVCLINSDSQIFVASRLNVPGAWQMPQGGIEDG 45
GV L + + F + P W +P GG++ G
Sbjct: 183 GVILYSDPADYFAPGVKSYPDGWNLPGGGVQRG 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,777,652
Number of Sequences: 62578
Number of extensions: 136285
Number of successful extensions: 453
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 78
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)