BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033022
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C6Z2|NUD25_ARATH Nudix hydrolase 25 OS=Arabidopsis thaliana GN=NUDT25 PE=1 SV=1
Length = 175
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 91/103 (88%), Positives = 98/103 (95%)
Query: 1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
M+ LP GYRPNVGVCLINSD+ +FVASRLNVPGAWQMPQGGIEDGEDPK AAMREL+EET
Sbjct: 1 MENLPPGYRPNVGVCLINSDNLVFVASRLNVPGAWQMPQGGIEDGEDPKSAAMRELQEET 60
Query: 61 GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
G+VSAEI++EVPNWLTYDFPPAVK KVNRLWGGEWHGQAQKWY
Sbjct: 61 GVVSAEIVSEVPNWLTYDFPPAVKAKVNRLWGGEWHGQAQKWY 103
>sp|Q9CAF2|NUD26_ARATH Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26
PE=1 SV=1
Length = 216
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 67/103 (65%), Positives = 85/103 (82%)
Query: 1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60
M+ P GYR NVGVCL+NS +IF ASRL++P AWQMPQGGI++GEDP++A MREL+EET
Sbjct: 56 MESPPEGYRRNVGVCLMNSSKKIFTASRLDIPSAWQMPQGGIDEGEDPRVAVMRELKEET 115
Query: 61 GIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
G+ SAEI+AE P+W+TYDFPP V+ K+ WG +W GQAQKW+
Sbjct: 116 GVHSAEILAEAPHWITYDFPPDVREKLKVRWGSDWKGQAQKWF 158
>sp|Q9FNH4|NUD27_ARATH Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27
PE=1 SV=1
Length = 227
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 77/99 (77%)
Query: 5 PSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64
P GYR NVG+CL++ +IF AS++++P WQMPQGG ++GED + AA RELREETG+ S
Sbjct: 59 PVGYRKNVGICLVSPCRKIFTASKIHIPDTWQMPQGGADEGEDLRNAAFRELREETGVTS 118
Query: 65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
AE IAE+PNWLTYDFP VK K+NR W + GQAQKW+
Sbjct: 119 AEFIAEIPNWLTYDFPREVKDKLNRKWRTSYKGQAQKWF 157
>sp|Q2RV14|RPPH_RHORT RNA pyrophosphohydrolase OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rppH PE=3 SV=1
Length = 165
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 5/102 (4%)
Query: 3 GLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGI 62
GLP YR VG+ LIN+ Q+FVA RL+ P AWQMPQGGI+ GEDP+ AA RE+ EE G
Sbjct: 11 GLP--YRQGVGIMLINARGQVFVARRLDSPEAWQMPQGGIDAGEDPETAAWREMEEEIGT 68
Query: 63 VSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
+A ++ E WL YD P ++ RLWGG + GQ QKW+A
Sbjct: 69 RNALLLGETAGWLGYDLPEELR---GRLWGGRFQGQRQKWFA 107
>sp|B9KN59|RPPH_RHOSK RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain KD131 /
KCTC 12085) GN=rppH PE=3 SV=1
Length = 162
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 6/106 (5%)
Query: 1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREE 59
+D L YRP VG+ LIN + IF R++ P AWQMPQGGI++GE P+ AA+REL EE
Sbjct: 5 IDPLTLPYRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEE 64
Query: 60 TGIVS--AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
TGI + E +A+ P+W+TYD PP + + R+WGG++ GQ QKW+
Sbjct: 65 TGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWF 107
>sp|Q3IZC1|RPPH_RHOS4 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rppH PE=3 SV=1
Length = 162
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 6/106 (5%)
Query: 1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREE 59
+D L YRP VG+ LIN + IF R++ P AWQMPQGGI++GE P+ AA+REL EE
Sbjct: 5 IDPLTLPYRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEE 64
Query: 60 TGIVS--AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
TGI + E +A+ P+W+TYD PP + + R+WGG++ GQ QKW+
Sbjct: 65 TGIPAERVEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWF 107
>sp|A3PMX6|RPPH_RHOS1 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rppH PE=3 SV=1
Length = 162
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 71/99 (71%), Gaps = 6/99 (6%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
YRP VG+ LIN + IF R++ P AWQMPQGGI++GE P+ AA+REL EETGI +
Sbjct: 12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEGEKPREAALRELWEETGIPAER 71
Query: 65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
E +A+ P+W+TYD PP + + R+WGG++ GQ QKW+
Sbjct: 72 VEFVAKAPDWVTYDLPPEL---LGRVWGGKYRGQRQKWF 107
>sp|A1B502|RPPH_PARDP RNA pyrophosphohydrolase OS=Paracoccus denitrificans (strain Pd
1222) GN=rppH PE=3 SV=1
Length = 163
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 70/109 (64%), Gaps = 8/109 (7%)
Query: 5 PSG--YRPNVGVCLINSDSQIFVASRLNVPG-AWQMPQGGIEDGEDPKLAAMRELREETG 61
PSG YRP GV LIN +F R++ PG AWQMPQGGI+ GE P+ AA+REL EETG
Sbjct: 8 PSGLPYRPCAGVVLINPVGLVFAGQRIDNPGPAWQMPQGGIDRGESPREAALRELVEETG 67
Query: 62 IVS--AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLL 108
+ +++AE P W+TYD PP + KV W G + GQ QKW+A L
Sbjct: 68 VTPDLVDVLAETPGWVTYDLPPELLGKV---WKGRYGGQKQKWFAMRFL 113
>sp|A4WWV6|RPPH_RHOS5 RNA pyrophosphohydrolase OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rppH PE=3 SV=1
Length = 162
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 68/99 (68%), Gaps = 6/99 (6%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
YRP VG+ LIN + IF R++ P AWQMPQGGI+ E P+ AA+REL+EETGI
Sbjct: 12 YRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDADEKPRQAALRELQEETGIPEDL 71
Query: 65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
E +A+ P W+TYD PP + + R+WGG++ GQ QKW+
Sbjct: 72 VEFVAKAPEWVTYDLPPDL---LGRVWGGKYRGQRQKWF 107
>sp|Q5FU29|RPPH_GLUOX RNA pyrophosphohydrolase OS=Gluconobacter oxydans (strain 621H)
GN=rppH PE=3 SV=1
Length = 170
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 67/97 (69%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPG-AWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRPNVG+ L N D ++F+A R ++PG WQ PQGGI++GE P++AA+RE+ EE G +A
Sbjct: 9 YRPNVGIALFNRDGKLFIARRTDLPGDVWQCPQGGIDEGETPQVAALREMGEEIGTQNAR 68
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
I+AE WL+YD P + + + GG + GQ QKW+
Sbjct: 69 ILAERSGWLSYDLPSDL---IGKALGGRFRGQTQKWF 102
>sp|Q16BL5|RPPH_ROSDO RNA pyrophosphohydrolase OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rppH PE=3 SV=1
Length = 160
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/99 (52%), Positives = 66/99 (66%), Gaps = 6/99 (6%)
Query: 8 YRPNVGVCLINSDSQIFVASRL-NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
YRP VGV L+N ++FV R N AWQMPQGG+E GEDP+ AA+REL EETG+
Sbjct: 11 YRPCVGVMLMNGQGEVFVGQRRDNNVAAWQMPQGGVEKGEDPRAAALRELWEETGVNPEL 70
Query: 65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
AE++AE +WL YD P + V +LW G + GQ QKW+
Sbjct: 71 AEVVAETEDWLPYDLPYDL---VPKLWKGRYRGQEQKWF 106
>sp|Q3SVH3|RPPH_NITWN RNA pyrophosphohydrolase OS=Nitrobacter winogradskyi (strain Nb-255
/ ATCC 25391) GN=rppH PE=3 SV=1
Length = 170
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 65/112 (58%), Gaps = 10/112 (8%)
Query: 2 DGLPSGYRPNVGVCLINSDSQIFVASRLNVPGA-----WQMPQGGIEDGEDPKLAAMREL 56
D LP YR VG+ LIN +FV R V WQMPQGG++ GED LAA REL
Sbjct: 5 DDLP--YRTCVGMMLINERGLVFVGRRAGVEQVDDSYVWQMPQGGVDPGEDTWLAAKREL 62
Query: 57 REETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLL 108
EET + S E +AE+P+WLTYD P V R W G + GQ QKWYA +
Sbjct: 63 YEETSVRSIEKLAEIPDWLTYDIPRVV---AGRAWKGRYRGQRQKWYAVRFI 111
>sp|A8LKJ8|RPPH_DINSH RNA pyrophosphohydrolase OS=Dinoroseobacter shibae (strain DFL 12)
GN=rppH PE=3 SV=1
Length = 160
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 6/98 (6%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIV--S 64
YR VGV L + ++F R + AWQMPQGGIEDGED + AA+REL EETG+
Sbjct: 11 YRKCVGVVLWDGAGRVFTGQRYDSELPAWQMPQGGIEDGEDARTAALRELVEETGVAVEK 70
Query: 65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKW 102
E++AE P+W+ YD PP + V R+W G + GQAQ+W
Sbjct: 71 VEVLAETPDWIKYDLPPEI---VPRIWKGRYKGQAQRW 105
>sp|Q68XD3|RPPH_RICTY RNA pyrophosphohydrolase OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rppH PE=3 SV=1
Length = 161
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+D+QIFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNADNQIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSNKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKCWYSYDVPSFL---IPKLWNGNFRGQKQRWF 106
>sp|Q5LMH8|RPPH_RUEPO RNA pyrophosphohydrolase OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=rppH PE=3 SV=1
Length = 161
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 66/104 (63%), Gaps = 6/104 (5%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS-- 64
YRP VGV L+N D +FV R++ AWQMPQGG+++ EDP AA+REL EETG+ +
Sbjct: 11 YRPCVGVVLMNGDGFVFVGQRMDQNTDAWQMPQGGVDEDEDPFEAALRELWEETGVTADL 70
Query: 65 AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLL 108
E++AE WL YD P + V R+W G + GQ QKWY L
Sbjct: 71 VEMVAETDGWLPYDLPHDL---VPRIWKGRYRGQEQKWYLFRFL 111
>sp|A6Q441|RPPH_NITSB RNA pyrophosphohydrolase OS=Nitratiruptor sp. (strain SB155-2)
GN=rppH PE=3 SV=1
Length = 155
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 64/100 (64%), Gaps = 9/100 (9%)
Query: 8 YRPNVGVCLINSDS----QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63
YRPNV +++S+ + F+A+R +VP +WQ PQGGI+ GE PK A +REL+EE G
Sbjct: 6 YRPNVAAIVLSSNYPKKVEFFIAARSDVPDSWQFPQGGIDKGESPKEALLRELKEEIGTD 65
Query: 64 SAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
EIIAE P W++YDFP + K+ + GQ QK++
Sbjct: 66 KIEIIAEFPEWVSYDFPKKIAKKMY-----PYDGQTQKYF 100
>sp|Q1RHV9|RPPH_RICBR RNA pyrophosphohydrolase OS=Rickettsia bellii (strain RML369-C)
GN=rppH PE=3 SV=1
Length = 161
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+D++IFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNADNKIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSSKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKCWYSYDVPSFL---IPKLWDGNFRGQKQRWF 106
>sp|A8GW83|RPPH_RICB8 RNA pyrophosphohydrolase OS=Rickettsia bellii (strain OSU 85-389)
GN=rppH PE=3 SV=1
Length = 161
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+D++IFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNADNKIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSSKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKCWYSYDVPSFL---IPKLWDGNFRGQKQRWF 106
>sp|Q9ZDT9|RPPH_RICPR RNA pyrophosphohydrolase OS=Rickettsia prowazekii (strain Madrid E)
GN=rppH PE=1 SV=1
Length = 161
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+D+QIFV R++ +WQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNADNQIFVGKRIDTKISSWQMPQGGIVPGETPSIAAMREMLEEIGSNKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKCWYSYDVPSFL---IPKLWNGNFRGQKQRWF 106
>sp|A9H3A6|RPPH_GLUDA RNA pyrophosphohydrolase OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rppH PE=3 SV=1
Length = 167
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 62/105 (59%), Gaps = 11/105 (10%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--------WQMPQGGIEDGEDPKLAAMRELREE 59
YR NVG L N+ +I + R + PGA WQ PQGGI+ EDP+ A +RELREE
Sbjct: 9 YRRNVGAMLFNAQGRILIGRRTDQPGAGGPLDGGVWQCPQGGIDADEDPEEAVLRELREE 68
Query: 60 TGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
G A I+ P+WLTYD P A+ + R GG + GQ QKW+A
Sbjct: 69 IGTDRAVIMGARPDWLTYDLPAAL---IGRALGGRYRGQTQKWFA 110
>sp|A8EXY5|RPPH_RICCK RNA pyrophosphohydrolase OS=Rickettsia canadensis (strain McKiel)
GN=rppH PE=3 SV=1
Length = 161
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+D+ IFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKCWYSYDLPSFL---IPKLWNGNFRGQKQRWF 106
>sp|A5FWY8|RPPH_ACICJ RNA pyrophosphohydrolase OS=Acidiphilium cryptum (strain JF-5)
GN=rppH PE=3 SV=1
Length = 164
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 10/118 (8%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNV-PGA---WQMPQGGIEDGEDPKLAAMRELREETGIV 63
YR NVG L + +I VA R ++ P A WQ+PQGGI+ EDP A +REL EE G
Sbjct: 9 YRSNVGAALFSRAGKILVARRADLGPDAAYQWQLPQGGIDGDEDPAAAVLRELDEEIGTT 68
Query: 64 SAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLVP--LTLSTHTH 119
+ E++ E+P WL+YDFPP V K +G GQ Q+W+A L + L H H
Sbjct: 69 AVELLGEIPEWLSYDFPPDVVAK----FGARHRGQRQRWFALRFLGTDDMIRLDAHAH 122
>sp|C4K0V5|RPPH_RICPU RNA pyrophosphohydrolase OS=Rickettsia peacockii (strain Rustic)
GN=rppH PE=3 SV=1
Length = 161
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+D+ IFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKFWYSYDVPSFL---IPKLWNGNFRGQKQRWF 106
>sp|A8GRA7|RPPH_RICRS RNA pyrophosphohydrolase OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rppH PE=3 SV=1
Length = 161
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+D+ IFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKCWYSYDVPSFL---IPKLWNGNFRGQKQRWF 106
>sp|B0BWQ7|RPPH_RICRO RNA pyrophosphohydrolase OS=Rickettsia rickettsii (strain Iowa)
GN=rppH PE=3 SV=1
Length = 161
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+D+ IFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKCWYSYDVPSFL---IPKLWNGNFRGQKQRWF 106
>sp|Q4UKM5|RPPH_RICFE RNA pyrophosphohydrolase OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rppH PE=3 SV=1
Length = 161
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+D+ IFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKCWYSYDVPSFL---IPKLWNGNFRGQKQRWF 106
>sp|C3PMT3|RPPH_RICAE RNA pyrophosphohydrolase OS=Rickettsia africae (strain ESF-5)
GN=rppH PE=3 SV=1
Length = 161
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+D+ IFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNADNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKFWYSYDVPSFL---IPKLWNGNFRGQQQRWF 106
>sp|A8HRT0|RPPH_AZOC5 RNA pyrophosphohydrolase OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=rppH PE=3 SV=1
Length = 168
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%), Gaps = 11/110 (10%)
Query: 1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVP------GAWQMPQGGIEDGEDPKLAAMR 54
++ LP YRP VG+ + N Q+F+ RL+ P +WQMPQGGI+ GE+P AA+R
Sbjct: 4 LEDLP--YRPCVGLAIFNRAGQVFLGQRLSGPEHVDATHSWQMPQGGIDKGEEPYEAALR 61
Query: 55 ELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
EL EET I S + EV +WL+YD P V + W G++ GQ QKW+A
Sbjct: 62 ELYEETSIRSVVKLGEVEDWLSYDLPGRVAGEA---WKGKYRGQTQKWFA 108
>sp|Q21CZ3|RPPH_RHOPB RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain
BisB18) GN=rppH PE=3 SV=1
Length = 175
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 65/109 (59%), Gaps = 11/109 (10%)
Query: 2 DGLPSGYRPNVGVCLINSDSQIFVASRL------NVPGAWQMPQGGIEDGEDPKLAAMRE 55
D LP YR VG+ L+N++ +F+ RL + WQMPQGG++ GEDP AA RE
Sbjct: 5 DDLP--YRTCVGMMLLNAEGLVFIGRRLGGIEHVDETHVWQMPQGGVDPGEDPWTAAKRE 62
Query: 56 LREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
L EET + S E + E+ +WL YD P +T R W G + GQ QKWYA
Sbjct: 63 LYEETSVRSVEKLGEIADWLIYDIP---RTVAGRSWKGRYRGQRQKWYA 108
>sp|Q1GSV9|RPPH_SPHAL RNA pyrophosphohydrolase OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rppH PE=3 SV=1
Length = 158
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 2 DGLPSGYRPNVGVCLINSDSQIFVASRLNVPG-AWQMPQGGIEDGEDPKLAAMRELREET 60
D LP YRP GV L N D ++FV RL+ AWQMPQGGI++GED + AA+REL EET
Sbjct: 5 DKLP--YRPCAGVMLANRDGRVFVGQRLDTSSEAWQMPQGGIDEGEDAEKAAIRELGEET 62
Query: 61 GIVSA--EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLVPLTLSTHT 118
GI +IIA YD P + + ++WGG++ GQ Q W+ + + HT
Sbjct: 63 GIHGGLVDIIARSREEYFYDLPDHL---IGKMWGGKYRGQRQHWFLMRFMGEDSDIDIHT 119
>sp|A5E954|RPPH_BRASB RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=rppH PE=3 SV=1
Length = 168
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 9/103 (8%)
Query: 8 YRPNVGVCLINSDSQIFVASR------LNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61
YR VG+ LINS+ +F+ R ++ WQMPQGG++ GED AA REL EET
Sbjct: 9 YRTCVGIALINSEGLVFIGRRAGGIEHVDDAHVWQMPQGGVDPGEDAWEAAKRELYEETS 68
Query: 62 IVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
+ S E +AE+ +WLTYD P +T R W G + GQ QKW+A
Sbjct: 69 VRSVEKLAEIDDWLTYDIP---RTVAGRAWKGRYRGQRQKWFA 108
>sp|P61786|RPPH_RHOPA RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rppH PE=3 SV=1
Length = 168
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 8 YRPNVGVCLINSDSQIFVASR------LNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61
YR VGV LIN + +F+ R ++ WQMPQGG++ GED AA REL EET
Sbjct: 9 YRTCVGVMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWKAAKRELYEETS 68
Query: 62 IVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLL 107
+ S E +AEVP+WL YD P +T R W G + GQ QKW+A+
Sbjct: 69 VNSVEKLAEVPDWLIYDIP---RTVAGRAWKGRYRGQRQKWFAARF 111
>sp|Q92IV0|RPPH_RICCN RNA pyrophosphohydrolase OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rppH PE=3 SV=1
Length = 161
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YRP VG+ ++N+++ IFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRPGVGMMILNANNHIFVGKRIDTKISAWQMPQGGIVPGETPSIAAMREMLEEIGSDKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKFWYSYDVPSFL---IPKLWNGNFRGQKQRWF 106
>sp|A4YKE4|RPPH_BRASO RNA pyrophosphohydrolase OS=Bradyrhizobium sp. (strain ORS278)
GN=rppH PE=3 SV=1
Length = 168
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 9/103 (8%)
Query: 8 YRPNVGVCLINSDSQIFVASR------LNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61
YR VG+ LINS+ +F+ R ++ WQMPQGG++ GED AA REL EET
Sbjct: 9 YRTCVGIALINSEGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDAWEAAKRELYEETS 68
Query: 62 IVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
+ S E +AE+ +WLTYD P +T R W G + GQ QKW+A
Sbjct: 69 VRSVEKLAEIDDWLTYDIP---RTVAGRAWKGRYRGQRQKWFA 108
>sp|Q9A2W6|RPPH_CAUCR RNA pyrophosphohydrolase OS=Caulobacter crescentus (strain ATCC
19089 / CB15) GN=rppH PE=3 SV=1
Length = 172
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
+RPNVGV L + D ++++ R P WQ PQGG+++GED ++AA REL EETG+ S
Sbjct: 9 HRPNVGVVLFHPDGRVWLGRRHRQAPPYNWQFPQGGVDEGEDLEVAARRELAEETGVTSV 68
Query: 66 EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLL----LVPLTLSTHTHF 120
E++ W+TYDFPP V G W GQ Q W+A + + L H F
Sbjct: 69 ELLGRTEGWITYDFPPEVMANPKHARG--WRGQKQVWFAYRFVGEESEIDLEADEHIEF 125
>sp|B8H5H3|RPPH_CAUCN RNA pyrophosphohydrolase OS=Caulobacter crescentus (strain NA1000 /
CB15N) GN=rppH PE=3 SV=1
Length = 172
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 8/119 (6%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65
+RPNVGV L + D ++++ R P WQ PQGG+++GED ++AA REL EETG+ S
Sbjct: 9 HRPNVGVVLFHPDGRVWLGRRHRQAPPYNWQFPQGGVDEGEDLEVAARRELAEETGVTSV 68
Query: 66 EIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLL----LVPLTLSTHTHF 120
E++ W+TYDFPP V G W GQ Q W+A + + L H F
Sbjct: 69 ELLGRTEGWITYDFPPEVMANPKHARG--WRGQKQVWFAYRFVGEESEIDLEADEHIEF 125
>sp|Q5GT39|RPPH_WOLTR RNA pyrophosphohydrolase OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=rppH PE=3 SV=1
Length = 161
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
YRP VG+ L N +F+ R + WQMPQGGI+DGE + AA+REL EE G A+I
Sbjct: 8 YRPCVGIMLFNKQGHVFIGKRFDSDSYWQMPQGGIDDGEKLEQAALRELLEEVGTDKAKI 67
Query: 68 IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IA+ +W+ Y+ P V + W G + GQ Q+W+
Sbjct: 68 IAKNKDWIYYNLPEEV---IPTCWNGRYSGQKQRWF 100
>sp|Q2G7H8|RPPH_NOVAD RNA pyrophosphohydrolase OS=Novosphingobium aromaticivorans (strain
DSM 12444) GN=rppH PE=3 SV=1
Length = 161
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 67/104 (64%), Gaps = 9/104 (8%)
Query: 3 GLPSGYRPNVGVCLINSDSQIFVASRLNVPG--AWQMPQGGIEDGEDPKLAAMRELREET 60
GLP YRP VGV L+NS ++FV R++ AWQMPQGGI+DGE+ AA+REL EET
Sbjct: 7 GLP--YRPCVGVMLVNSQGRVFVGRRIDDKDGVAWQMPQGGIDDGEELHPAALRELSEET 64
Query: 61 GIVS--AEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKW 102
G+ + IIAE YD P + + +LWGG++ GQ QKW
Sbjct: 65 GVAAELVTIIAESREEHLYDLPDEL---IGKLWGGQYRGQRQKW 105
>sp|A8GMN4|RPPH_RICAH RNA pyrophosphohydrolase OS=Rickettsia akari (strain Hartford)
GN=rppH PE=3 SV=1
Length = 161
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66
YR VG+ ++N+D+ IFV R++ AWQMPQGGI GE P +AAMRE+ EE G
Sbjct: 13 YRLGVGMMILNADNHIFVGKRIDTKLSAWQMPQGGIVPGETPSIAAMREMLEEIGSDKGY 72
Query: 67 IIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
IIAE W +YD P + + +LW G + GQ Q+W+
Sbjct: 73 IIAESKCWYSYDVPSLL---IPKLWNGNFRGQKQRWF 106
>sp|Q89X78|RPPH_BRAJA RNA pyrophosphohydrolase OS=Bradyrhizobium japonicum (strain USDA
110) GN=rppH PE=3 SV=1
Length = 167
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 61/103 (59%), Gaps = 9/103 (8%)
Query: 8 YRPNVGVCLINSDSQIFVASR------LNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61
YR VGV LIN+ +F+ R ++ WQMPQGG++ GED AA REL EET
Sbjct: 9 YRTCVGVMLINAKGLVFIGRRAGGIEHIDDTHVWQMPQGGVDPGEDTWAAAKRELYEETS 68
Query: 62 IVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
+ S E + EVP+WL YD P +T R W G + GQ QKW+A
Sbjct: 69 VRSVERLGEVPDWLIYDIP---RTVAGRAWKGRYRGQRQKWFA 108
>sp|Q2J3I9|RPPH_RHOP2 RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain
HaA2) GN=rppH PE=3 SV=1
Length = 167
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 61/103 (59%), Gaps = 9/103 (8%)
Query: 8 YRPNVGVCLINSDSQIFVASR------LNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61
YR VG+ LIN +F+ R ++ WQMPQGG++ GED AA REL EET
Sbjct: 9 YRTCVGMMLINRAGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWEAAKRELYEETN 68
Query: 62 IVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
+ S E IAEVP+WL YD P +T R W G + GQ QKW+A
Sbjct: 69 VRSVEKIAEVPDWLIYDIP---RTVAGRAWKGRYRGQRQKWFA 108
>sp|Q8FYM9|RPPH_BRUSU RNA pyrophosphohydrolase OS=Brucella suis biovar 1 (strain 1330)
GN=rppH PE=3 SV=2
Length = 178
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 11/105 (10%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--------WQMPQGGIEDGEDPKLAAMRELREE 59
YRP VG+ ++N ++ R+ +PG WQMPQGGI+ GEDP AA+REL EE
Sbjct: 19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEE 78
Query: 60 TGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
TG+ S ++ E +W+ YD PP + V G++ GQ QKW+A
Sbjct: 79 TGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFA 120
>sp|A9WWW1|RPPH_BRUSI RNA pyrophosphohydrolase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=rppH PE=3 SV=1
Length = 178
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 11/105 (10%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--------WQMPQGGIEDGEDPKLAAMRELREE 59
YRP VG+ ++N ++ R+ +PG WQMPQGGI+ GEDP AA+REL EE
Sbjct: 19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEE 78
Query: 60 TGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
TG+ S ++ E +W+ YD PP + V G++ GQ QKW+A
Sbjct: 79 TGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFA 120
>sp|A5VSH6|RPPH_BRUO2 RNA pyrophosphohydrolase OS=Brucella ovis (strain ATCC 25840 /
63/290 / NCTC 10512) GN=rppH PE=3 SV=1
Length = 178
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 11/105 (10%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--------WQMPQGGIEDGEDPKLAAMRELREE 59
YRP VG+ ++N ++ R+ +PG WQMPQGGI+ GEDP AA+REL EE
Sbjct: 19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEE 78
Query: 60 TGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
TG+ S ++ E +W+ YD PP + V G++ GQ QKW+A
Sbjct: 79 TGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFA 120
>sp|A9M874|RPPH_BRUC2 RNA pyrophosphohydrolase OS=Brucella canis (strain ATCC 23365 /
NCTC 10854) GN=rppH PE=3 SV=1
Length = 178
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 11/105 (10%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--------WQMPQGGIEDGEDPKLAAMRELREE 59
YRP VG+ ++N ++ R+ +PG WQMPQGGI+ GEDP AA+REL EE
Sbjct: 19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEE 78
Query: 60 TGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
TG+ S ++ E +W+ YD PP + V G++ GQ QKW+A
Sbjct: 79 TGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFA 120
>sp|Q13DN7|RPPH_RHOPS RNA pyrophosphohydrolase OS=Rhodopseudomonas palustris (strain
BisB5) GN=rppH PE=3 SV=1
Length = 167
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 61/103 (59%), Gaps = 9/103 (8%)
Query: 8 YRPNVGVCLINSDSQIFVASR------LNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61
YR VG+ LIN + +F+ R ++ WQMPQGG++ GED AA REL EET
Sbjct: 9 YRTCVGMMLINREGLVFIGRRAGGIEHVDDTHVWQMPQGGVDPGEDTWEAAKRELYEETN 68
Query: 62 IVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
+ S E I EVP+WL YD P +T R W G + GQ QKW+A
Sbjct: 69 VRSVEKIGEVPDWLIYDIP---RTVAGRAWKGRYRGQRQKWFA 108
>sp|Q8YJ71|RPPH_BRUME RNA pyrophosphohydrolase OS=Brucella melitensis biotype 1 (strain
16M / ATCC 23456 / NCTC 10094) GN=rppH PE=3 SV=1
Length = 178
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 11/105 (10%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--------WQMPQGGIEDGEDPKLAAMRELREE 59
YRP VG+ ++N ++ R+ +PG WQMPQGGI+ GEDP AA+REL EE
Sbjct: 19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEE 78
Query: 60 TGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
TG+ S ++ E +W+ YD PP + V G++ GQ QKW+A
Sbjct: 79 TGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFA 120
>sp|C0RF85|RPPH_BRUMB RNA pyrophosphohydrolase OS=Brucella melitensis biotype 2 (strain
ATCC 23457) GN=rppH PE=3 SV=1
Length = 178
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 63/105 (60%), Gaps = 11/105 (10%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGA--------WQMPQGGIEDGEDPKLAAMRELREE 59
YRP VG+ ++N ++ R+ +PG WQMPQGGI+ GEDP AA+REL EE
Sbjct: 19 YRPCVGLMVLNKAGLVWAGRRIVIPGDEMDGATQLWQMPQGGIDKGEDPAQAALRELYEE 78
Query: 60 TGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYA 104
TG+ S ++ E +W+ YD PP + V G++ GQ QKW+A
Sbjct: 79 TGMTSVSLLEEASDWINYDLPPHL---VGLALKGKYRGQTQKWFA 120
>sp|Q9ZJZ8|RPPH_HELPJ RNA pyrophosphohydrolase OS=Helicobacter pylori (strain J99)
GN=rppH PE=3 SV=1
Length = 157
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 10/129 (7%)
Query: 4 LPSGYRPNVGVCLINSD----SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREE 59
L YRPNV +++ D ++F+A R+++ GAWQ PQGGI++GE P A REL EE
Sbjct: 2 LHKKYRPNVAAIIMSPDYPNTCEVFIAERIDIEGAWQFPQGGIDEGETPLEALYRELLEE 61
Query: 60 TGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWYASLLLLV-PLTLSTHT 118
G EI+A+ P W+ YDFP ++ K + GQ Q+++ L V + L+ HT
Sbjct: 62 IGTNEIEILAQYPRWIAYDFPSNMEHKFY-----SFDGQKQRYFLVRLKHVNNIDLNKHT 116
Query: 119 HFMKENQVV 127
+ Q +
Sbjct: 117 PEFRSYQFI 125
>sp|B3CM46|RPPH_WOLPP RNA pyrophosphohydrolase OS=Wolbachia pipientis subsp. Culex
pipiens (strain wPip) GN=rppH PE=3 SV=1
Length = 162
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67
YRP VG+ L N IF+ R + WQMPQGG+++GE+ + AA+REL EE G AE+
Sbjct: 8 YRPCVGIMLFNKQGNIFIGKRFDSDSYWQMPQGGVDEGEELEQAALRELLEEVGTDEAEV 67
Query: 68 IAEVPNWLTYDFPPAVKTKVNRLWGGEWHGQAQKWY 103
+A+ W+ Y+ P V + W G + GQ Q+W+
Sbjct: 68 VAQNKEWIYYNLPEEV---IPICWNGRYSGQKQRWF 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,423,935
Number of Sequences: 539616
Number of extensions: 1942726
Number of successful extensions: 5373
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 4501
Number of HSP's gapped (non-prelim): 486
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)