Query 033022
Match_columns 129
No_of_seqs 193 out of 1483
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09438 nudB dihydroneopterin 99.9 3.6E-22 7.7E-27 135.3 7.2 58 7-64 5-62 (148)
2 PRK00714 RNA pyrophosphohydrol 99.9 4.4E-21 9.5E-26 131.4 11.0 80 1-81 1-82 (156)
3 cd03671 Ap4A_hydrolase_plant_l 99.9 5.6E-21 1.2E-25 129.5 11.2 73 8-80 2-76 (147)
4 PRK15434 GDP-mannose mannosyl 99.9 7.7E-21 1.7E-25 130.6 11.3 57 8-64 16-74 (159)
5 cd04679 Nudix_Hydrolase_20 Mem 99.8 1.8E-20 3.9E-25 123.4 10.6 56 9-64 2-59 (125)
6 cd04681 Nudix_Hydrolase_22 Mem 99.8 2.4E-20 5.1E-25 123.5 10.5 55 11-65 3-59 (130)
7 PLN02325 nudix hydrolase 99.8 3.8E-20 8.2E-25 125.3 11.2 63 1-64 1-65 (144)
8 cd03430 GDPMH GDP-mannose glyc 99.8 1.1E-19 2.4E-24 123.0 11.3 57 8-64 11-69 (144)
9 cd04669 Nudix_Hydrolase_11 Mem 99.8 2.3E-19 4.9E-24 117.9 12.1 54 11-64 2-56 (121)
10 cd03673 Ap6A_hydrolase Diadeno 99.8 3E-20 6.6E-25 122.6 7.6 109 10-121 2-126 (131)
11 cd04676 Nudix_Hydrolase_17 Mem 99.8 3.3E-19 7.2E-24 117.0 12.4 112 9-121 2-127 (129)
12 cd03672 Dcp2p mRNA decapping e 99.8 7.6E-20 1.6E-24 124.0 9.4 56 10-66 2-58 (145)
13 cd04696 Nudix_Hydrolase_37 Mem 99.8 1.3E-19 2.8E-24 119.4 10.3 55 10-64 3-57 (125)
14 cd04671 Nudix_Hydrolase_13 Mem 99.8 3.4E-19 7.3E-24 117.6 10.8 54 11-64 2-57 (123)
15 cd04691 Nudix_Hydrolase_32 Mem 99.8 3.5E-19 7.6E-24 116.4 10.6 53 12-65 3-59 (117)
16 cd03674 Nudix_Hydrolase_1 Memb 99.8 2.1E-19 4.5E-24 120.6 9.7 56 9-65 2-58 (138)
17 cd04684 Nudix_Hydrolase_25 Con 99.8 4.3E-19 9.3E-24 116.6 11.0 54 11-65 2-57 (128)
18 cd04700 DR1025_like DR1025 fro 99.8 5.3E-19 1.1E-23 119.3 11.3 105 8-115 12-129 (142)
19 cd04680 Nudix_Hydrolase_21 Mem 99.8 4.4E-19 9.5E-24 115.6 10.6 54 11-65 2-55 (120)
20 cd03427 MTH1 MutT homolog-1 (M 99.8 4.5E-19 9.7E-24 118.3 10.8 108 11-121 3-121 (137)
21 PRK15472 nucleoside triphospha 99.8 3E-19 6.4E-24 120.1 9.8 55 10-64 4-62 (141)
22 cd04677 Nudix_Hydrolase_18 Mem 99.8 1.3E-18 2.9E-23 115.1 12.7 57 8-65 6-62 (132)
23 cd04664 Nudix_Hydrolase_7 Memb 99.8 2.6E-19 5.6E-24 118.5 8.8 55 10-64 2-59 (129)
24 cd04670 Nudix_Hydrolase_12 Mem 99.8 3E-19 6.5E-24 117.9 9.0 56 9-64 2-58 (127)
25 cd04683 Nudix_Hydrolase_24 Mem 99.8 7.3E-19 1.6E-23 114.8 10.4 54 11-65 2-58 (120)
26 cd04678 Nudix_Hydrolase_19 Mem 99.8 5E-19 1.1E-23 117.0 9.7 57 9-65 2-60 (129)
27 COG1051 ADP-ribose pyrophospha 99.8 7.9E-19 1.7E-23 119.0 10.7 56 8-64 9-66 (145)
28 cd03428 Ap4A_hydrolase_human_l 99.8 2E-19 4.2E-24 119.0 7.3 55 9-65 2-59 (130)
29 cd04687 Nudix_Hydrolase_28 Mem 99.8 1.6E-18 3.4E-23 114.7 10.8 55 9-64 1-56 (128)
30 PF00293 NUDIX: NUDIX domain; 99.8 4.3E-19 9.2E-24 117.0 7.7 57 8-64 1-61 (134)
31 cd04697 Nudix_Hydrolase_38 Mem 99.8 8.5E-19 1.8E-23 115.9 8.5 57 10-66 1-62 (126)
32 cd04682 Nudix_Hydrolase_23 Mem 99.8 1.2E-18 2.7E-23 114.3 8.9 53 11-64 3-60 (122)
33 cd04695 Nudix_Hydrolase_36 Mem 99.8 1.1E-18 2.4E-23 116.0 8.6 104 18-122 11-125 (131)
34 cd04689 Nudix_Hydrolase_30 Mem 99.8 3.7E-18 8.1E-23 112.3 10.9 54 10-65 2-55 (125)
35 cd04673 Nudix_Hydrolase_15 Mem 99.8 3.9E-18 8.4E-23 111.3 10.8 53 11-64 2-56 (122)
36 cd04511 Nudix_Hydrolase_4 Memb 99.8 2.6E-18 5.7E-23 114.0 10.0 55 9-64 13-69 (130)
37 cd04690 Nudix_Hydrolase_31 Mem 99.8 3.4E-18 7.5E-23 111.2 10.1 54 11-65 2-55 (118)
38 cd04672 Nudix_Hydrolase_14 Mem 99.8 9.2E-18 2E-22 110.3 11.9 54 9-64 2-55 (123)
39 cd04688 Nudix_Hydrolase_29 Mem 99.8 8.1E-18 1.8E-22 110.9 11.6 52 11-64 3-54 (126)
40 cd04666 Nudix_Hydrolase_9 Memb 99.8 4E-18 8.7E-23 112.4 10.0 53 11-64 2-57 (122)
41 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 3.7E-18 8.1E-23 113.9 9.9 58 9-66 2-62 (137)
42 cd04693 Nudix_Hydrolase_34 Mem 99.8 1.8E-18 3.9E-23 114.2 8.3 53 11-64 2-59 (127)
43 cd02885 IPP_Isomerase Isopente 99.8 1.8E-18 3.9E-23 119.3 8.5 57 9-65 30-91 (165)
44 cd04692 Nudix_Hydrolase_33 Mem 99.8 2.2E-18 4.8E-23 116.3 7.7 57 8-64 1-65 (144)
45 cd03426 CoAse Coenzyme A pyrop 99.8 4.4E-18 9.4E-23 116.6 9.2 55 11-65 4-65 (157)
46 cd03429 NADH_pyrophosphatase N 99.8 3.2E-18 6.8E-23 114.0 7.7 56 11-66 2-58 (131)
47 PRK10546 pyrimidine (deoxy)nuc 99.7 1.7E-17 3.7E-22 110.4 10.4 97 12-110 6-111 (135)
48 PRK10776 nucleoside triphospha 99.7 2.9E-17 6.3E-22 107.9 11.3 98 10-110 5-112 (129)
49 PRK15393 NUDIX hydrolase YfcD; 99.7 8E-18 1.7E-22 117.8 9.0 58 8-65 36-98 (180)
50 cd03675 Nudix_Hydrolase_2 Cont 99.7 1.5E-17 3.3E-22 110.5 10.0 50 15-64 5-55 (134)
51 cd04699 Nudix_Hydrolase_39 Mem 99.7 2.4E-17 5.3E-22 108.4 10.5 56 10-65 2-61 (129)
52 cd04686 Nudix_Hydrolase_27 Mem 99.7 1.6E-17 3.6E-22 110.5 9.4 52 11-64 2-53 (131)
53 PRK03759 isopentenyl-diphospha 99.7 1.6E-17 3.4E-22 116.6 9.7 60 7-66 32-96 (184)
54 TIGR00586 mutt mutator mutT pr 99.7 4.3E-17 9.3E-22 107.3 10.4 101 8-111 3-113 (128)
55 cd04667 Nudix_Hydrolase_10 Mem 99.7 4E-17 8.8E-22 105.6 9.5 48 17-66 7-54 (112)
56 cd04694 Nudix_Hydrolase_35 Mem 99.7 4.9E-17 1.1E-21 110.0 10.2 55 11-65 3-61 (143)
57 cd04661 MRP_L46 Mitochondrial 99.7 3.5E-17 7.6E-22 109.1 9.2 45 20-64 12-57 (132)
58 TIGR02150 IPP_isom_1 isopenten 99.7 3.3E-17 7.3E-22 112.4 8.3 57 7-65 25-86 (158)
59 PRK00241 nudC NADH pyrophospha 99.7 1.3E-16 2.8E-21 117.2 9.7 100 9-111 132-238 (256)
60 cd04685 Nudix_Hydrolase_26 Mem 99.7 2.4E-16 5.2E-21 105.4 10.2 55 10-64 1-59 (133)
61 PRK05379 bifunctional nicotina 99.7 2.3E-16 4.9E-21 120.1 10.2 54 10-64 204-259 (340)
62 cd03425 MutT_pyrophosphohydrol 99.7 7.2E-16 1.6E-20 100.2 10.8 96 11-110 3-109 (124)
63 cd02883 Nudix_Hydrolase Nudix 99.7 1.7E-15 3.7E-20 97.6 11.2 55 11-65 2-57 (123)
64 PRK11762 nudE adenosine nucleo 99.7 6.9E-16 1.5E-20 108.4 9.5 57 11-67 49-108 (185)
65 PRK10707 putative NUDIX hydrol 99.6 3E-15 6.5E-20 105.6 11.2 59 8-66 29-94 (190)
66 cd04665 Nudix_Hydrolase_8 Memb 99.6 3.5E-15 7.5E-20 97.9 10.6 52 12-66 3-54 (118)
67 cd04674 Nudix_Hydrolase_16 Mem 99.6 1.1E-14 2.3E-19 95.5 11.8 53 11-64 6-60 (118)
68 PRK08999 hypothetical protein; 99.6 5.4E-15 1.2E-19 111.1 10.5 100 8-110 4-113 (312)
69 cd04662 Nudix_Hydrolase_5 Memb 99.6 8.9E-15 1.9E-19 96.7 10.2 55 11-65 2-65 (126)
70 cd04663 Nudix_Hydrolase_6 Memb 99.6 1.6E-14 3.5E-19 95.6 11.1 52 11-64 2-55 (126)
71 KOG2839 Diadenosine and diphos 99.6 2.5E-15 5.5E-20 99.9 7.0 60 5-64 5-67 (145)
72 cd03676 Nudix_hydrolase_3 Memb 99.6 5.8E-15 1.3E-19 103.1 9.2 58 8-65 31-97 (180)
73 TIGR00052 nudix-type nucleosid 99.6 6.5E-15 1.4E-19 103.5 8.4 59 9-67 44-111 (185)
74 PRK10729 nudF ADP-ribose pyrop 99.6 3.3E-14 7.2E-19 101.2 10.8 59 10-68 50-117 (202)
75 TIGR02705 nudix_YtkD nucleosid 99.6 3.6E-14 7.8E-19 97.1 10.4 55 10-67 25-79 (156)
76 PLN02709 nudix hydrolase 99.5 2E-13 4.4E-18 97.9 9.9 53 21-73 51-110 (222)
77 COG0494 MutT NTP pyrophosphohy 99.4 2.7E-13 5.9E-18 89.4 6.7 54 12-65 14-69 (161)
78 KOG3084 NADH pyrophosphatase I 99.4 3.4E-13 7.4E-18 99.9 7.4 61 8-68 186-248 (345)
79 cd03670 ADPRase_NUDT9 ADP-ribo 99.4 1.2E-12 2.7E-17 91.9 9.7 41 22-63 50-90 (186)
80 PRK15009 GDP-mannose pyrophosp 99.4 1.8E-12 4E-17 91.5 9.9 59 10-69 46-114 (191)
81 COG2816 NPY1 NTP pyrophosphohy 99.4 2.8E-13 6.1E-18 99.5 5.9 99 10-111 145-250 (279)
82 PLN02791 Nudix hydrolase homol 99.3 2.7E-12 5.9E-17 105.7 7.0 57 8-64 31-93 (770)
83 PLN02552 isopentenyl-diphospha 99.3 3.2E-12 6.9E-17 93.4 6.5 58 7-64 54-133 (247)
84 PLN03143 nudix hydrolase; Prov 99.2 2.3E-11 5E-16 90.6 7.1 55 10-64 129-190 (291)
85 cd03431 DNA_Glycosylase_C DNA 99.1 1.2E-09 2.5E-14 70.4 9.1 93 12-110 5-104 (118)
86 KOG3041 Nucleoside diphosphate 99.0 3E-09 6.6E-14 74.4 10.0 59 10-69 74-138 (225)
87 KOG3069 Peroxisomal NUDIX hydr 99.0 3.1E-09 6.8E-14 76.2 8.5 54 11-64 45-106 (246)
88 COG1443 Idi Isopentenyldiphosp 98.9 1.5E-09 3.2E-14 74.6 4.8 58 8-65 32-94 (185)
89 KOG0648 Predicted NUDIX hydrol 98.9 1.6E-09 3.5E-14 80.3 5.2 57 8-64 114-174 (295)
90 COG4119 Predicted NTP pyrophos 98.7 5.6E-08 1.2E-12 63.8 5.2 56 9-64 3-67 (161)
91 PF14815 NUDIX_4: NUDIX domain 98.2 6.4E-06 1.4E-10 53.2 7.0 91 14-109 2-101 (114)
92 PLN02839 nudix hydrolase 98.2 2.5E-06 5.4E-11 65.4 4.9 44 21-64 218-266 (372)
93 KOG4195 Transient receptor pot 98.1 2.5E-06 5.4E-11 61.0 3.6 38 22-60 140-177 (275)
94 KOG2937 Decapping enzyme compl 97.7 6E-06 1.3E-10 62.1 -0.6 54 11-65 84-138 (348)
95 PF13869 NUDIX_2: Nucleotide h 97.5 0.0006 1.3E-08 47.9 7.2 55 7-63 41-98 (188)
96 KOG0142 Isopentenyl pyrophosph 96.7 0.00066 1.4E-08 48.1 1.3 58 8-65 51-122 (225)
97 KOG1689 mRNA cleavage factor I 96.5 0.007 1.5E-07 41.9 5.0 57 5-63 65-124 (221)
98 KOG4432 Uncharacterized NUDIX 95.8 0.017 3.7E-07 43.5 4.3 54 11-64 28-110 (405)
99 COG4112 Predicted phosphoester 95.3 0.059 1.3E-06 37.2 5.2 53 11-64 63-129 (203)
100 KOG4313 Thiamine pyrophosphoki 95.1 0.023 5.1E-07 41.7 3.0 43 22-64 149-196 (306)
101 PRK10880 adenine DNA glycosyla 94.3 0.19 4.1E-06 38.9 6.4 46 11-63 232-280 (350)
102 KOG4548 Mitochondrial ribosoma 92.5 0.27 5.7E-06 36.2 4.4 42 23-64 141-184 (263)
103 TIGR01084 mutY A/G-specific ad 91.6 0.46 9.9E-06 35.6 5.0 28 13-40 231-261 (275)
104 KOG4432 Uncharacterized NUDIX 89.8 0.83 1.8E-05 34.7 4.9 31 34-64 285-315 (405)
105 PF14443 DBC1: DBC1 89.0 0.65 1.4E-05 30.7 3.5 43 22-64 9-58 (126)
106 PRK13910 DNA glycosylase MutY; 86.2 1.1 2.3E-05 33.8 3.7 21 19-39 195-217 (289)
107 PF03487 IL13: Interleukin-13; 80.5 1.9 4.1E-05 22.6 2.1 25 36-60 12-36 (43)
108 COG1194 MutY A/G-specific DNA 77.3 2.6 5.6E-05 32.6 2.9 36 9-44 235-273 (342)
109 PF12860 PAS_7: PAS fold 74.8 1.6 3.4E-05 27.5 1.0 43 11-54 5-47 (115)
110 PF07026 DUF1317: Protein of u 74.1 6.8 0.00015 22.3 3.3 24 33-56 22-45 (60)
111 KOG2937 Decapping enzyme compl 70.2 1.5 3.2E-05 33.6 0.1 41 24-64 255-295 (348)
112 PF14044 NETI: NETI protein 58.6 9 0.0002 21.7 1.8 23 41-65 3-25 (57)
113 PF09505 Dimeth_Pyl: Dimethyla 53.3 8.5 0.00018 29.8 1.5 26 39-64 406-431 (466)
114 KOG1794 N-Acetylglucosamine ki 52.2 29 0.00063 26.6 4.1 52 11-65 14-65 (336)
115 PF12712 DUF3805: Domain of un 48.8 78 0.0017 21.4 5.3 49 18-66 24-72 (153)
116 KOG0648 Predicted NUDIX hydrol 47.9 7.4 0.00016 29.5 0.4 30 34-64 56-85 (295)
117 COG5493 Uncharacterized conser 44.8 64 0.0014 23.2 4.7 39 45-83 115-153 (231)
118 COG0828 RpsU Ribosomal protein 42.8 25 0.00055 20.6 2.1 18 37-54 1-18 (67)
119 PRK00446 cyaY frataxin-like pr 42.0 90 0.002 19.8 4.9 21 44-64 82-102 (105)
120 TIGR03421 FeS_CyaY iron donor 39.1 98 0.0021 19.5 4.6 21 44-64 80-100 (102)
121 PF08333 DUF1725: Protein of u 39.0 3.5 7.6E-05 18.3 -1.5 11 119-129 6-16 (20)
122 PRK07198 hypothetical protein; 38.3 57 0.0012 26.0 4.0 49 17-67 158-206 (418)
123 cd00503 Frataxin Frataxin is a 37.7 90 0.0019 19.8 4.2 21 44-64 83-103 (105)
124 PF01491 Frataxin_Cyay: Fratax 35.5 56 0.0012 20.8 3.1 22 43-64 85-106 (109)
125 COG0554 GlpK Glycerol kinase [ 31.9 1.4E+02 0.0031 24.5 5.3 55 11-67 16-75 (499)
126 PF11212 DUF2999: Protein of u 31.8 43 0.00093 20.0 1.9 14 51-64 58-71 (82)
127 PRK03298 hypothetical protein; 26.8 74 0.0016 23.2 2.7 35 10-44 22-58 (224)
128 COG4353 Uncharacterized conser 26.5 68 0.0015 22.4 2.4 15 34-48 128-142 (192)
129 PF13014 KH_3: KH domain 25.6 56 0.0012 16.7 1.5 13 52-64 12-24 (43)
130 PF11152 DUF2930: Protein of u 25.4 65 0.0014 23.0 2.2 33 11-50 94-126 (195)
131 PRK00270 rpsU 30S ribosomal pr 25.3 79 0.0017 18.2 2.2 26 38-63 2-29 (64)
132 PF03621 MbtH: MbtH-like prote 23.5 59 0.0013 18.1 1.4 22 32-53 27-49 (54)
133 TIGR03722 arch_KAE1 universal 22.8 1.7E+02 0.0036 22.2 4.2 50 11-64 9-64 (322)
134 PF10820 DUF2543: Protein of u 22.8 80 0.0017 18.8 1.9 33 35-67 36-68 (81)
135 COG1069 AraB Ribulose kinase [ 21.4 1.1E+02 0.0025 25.3 3.1 58 11-69 14-76 (544)
136 PRK01381 Trp operon repressor; 21.4 87 0.0019 19.8 2.0 14 52-65 57-70 (99)
137 KOG4634 Mitochondrial F1F0-ATP 21.0 70 0.0015 20.3 1.5 20 37-56 49-69 (105)
138 KOG3904 Predicted hydrolase RP 20.7 56 0.0012 23.5 1.1 19 46-64 23-41 (209)
139 PF13680 DUF4152: Protein of u 20.4 1.1E+02 0.0023 21.7 2.4 17 49-65 116-132 (227)
140 COG3864 Uncharacterized protei 20.1 1.1E+02 0.0023 23.9 2.6 51 8-61 340-391 (396)
No 1
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.87 E-value=3.6e-22 Score=135.30 Aligned_cols=58 Identities=34% Similarity=0.555 Sum_probs=53.6
Q ss_pred CCcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 7 GYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 7 ~~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
..+.+|++++++.++++||++|...++.|++|||++|+|||+.+||+||++||||+++
T Consensus 5 ~~~~~v~~vi~~~~~~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (148)
T PRK09438 5 KRPVSVLVVIYTPDLGVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDV 62 (148)
T ss_pred cCceEEEEEEEeCCCeEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCc
Confidence 3677899999999999999999876789999999999999999999999999999986
No 2
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.86 E-value=4.4e-21 Score=131.45 Aligned_cols=80 Identities=49% Similarity=0.894 Sum_probs=65.8
Q ss_pred CCCCCCCCcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee--eEEeecCceEEee
Q 033022 1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA--EIIAEVPNWLTYD 78 (129)
Q Consensus 1 m~~~~~~~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~ 78 (129)
|++-. .+|.++++++++.++++||++|.+.++.|++|||++++|||+.+||.||++||||+.+. .++.....++.|+
T Consensus 1 ~~~~~-~~~~~v~~~i~~~~g~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~ 79 (156)
T PRK00714 1 MIDDD-GYRPNVGIILLNRQGQVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYD 79 (156)
T ss_pred CCCCC-CCCCeEEEEEEecCCEEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEec
Confidence 44444 48999999999999999999998766899999999999999999999999999999863 3344444555666
Q ss_pred cCC
Q 033022 79 FPP 81 (129)
Q Consensus 79 ~~~ 81 (129)
++.
T Consensus 80 ~~~ 82 (156)
T PRK00714 80 LPK 82 (156)
T ss_pred CcH
Confidence 654
No 3
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.86 E-value=5.6e-21 Score=129.46 Aligned_cols=73 Identities=64% Similarity=1.250 Sum_probs=62.5
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce--eeEEeecCceEEeecC
Q 033022 8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS--AEIIAEVPNWLTYDFP 80 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~--~~~~~~~~~~~~~~~~ 80 (129)
+|.+|++++++.++++||++|.+.++.|++|||++++||++.+||+||++||||+++ ..++.....+..|.++
T Consensus 2 ~~~~v~~ii~~~~~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~ 76 (147)
T cd03671 2 YRPNVGVVLFNEDGKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLP 76 (147)
T ss_pred CCceEEEEEEeCCCEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeCh
Confidence 788999999999999999999986689999999999999999999999999999995 3445555555566654
No 4
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.86 E-value=7.7e-21 Score=130.59 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=50.3
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
...+|+++|.+.+++|||+||.+. +|.|++|||+|++|||+++||+||++||||+++
T Consensus 16 ~~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v 74 (159)
T PRK15434 16 PLISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRL 74 (159)
T ss_pred ceEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence 345777788888899999999753 489999999999999999999999999999985
No 5
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.8e-20 Score=123.45 Aligned_cols=56 Identities=30% Similarity=0.602 Sum_probs=51.6
Q ss_pred cCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 9 RPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
|.+|+++|++.++++||++|.+. +|.|.+|||++++|||+.+||+||++||||+++
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~ 59 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSI 59 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCc
Confidence 67899999999899999999753 489999999999999999999999999999996
No 6
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.84 E-value=2.4e-20 Score=123.45 Aligned_cols=55 Identities=36% Similarity=0.646 Sum_probs=49.7
Q ss_pred EEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
+|+++|++.++++||++|... +|.|.+|||++++|||+.+||.||++||||+++.
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 59 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVT 59 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCccc
Confidence 677788898899999999753 5899999999999999999999999999999864
No 7
>PLN02325 nudix hydrolase
Probab=99.84 E-value=3.8e-20 Score=125.27 Aligned_cols=63 Identities=29% Similarity=0.391 Sum_probs=53.4
Q ss_pred CCCCCCCCcCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 1 MDGLPSGYRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 1 m~~~~~~~~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
|+.-.+..+.+++++|++. +++||+||.+. .|.|.+|||+++.|||+.+||+||++||||+++
T Consensus 1 ~~~~~~~p~~~v~~vi~~~-~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v 65 (144)
T PLN02325 1 METGEPIPRVAVVVFLLKG-NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEI 65 (144)
T ss_pred CCCCCCCCeEEEEEEEEcC-CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCC
Confidence 5555555677777777775 69999999863 378999999999999999999999999999996
No 8
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.83 E-value=1.1e-19 Score=122.96 Aligned_cols=57 Identities=26% Similarity=0.378 Sum_probs=51.3
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 8 YRPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.+.+|+++|++.++++||++|.+ .+|.|.+|||++++|||+.+||+||++||||+++
T Consensus 11 p~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v 69 (144)
T cd03430 11 PLVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEF 69 (144)
T ss_pred CeEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCc
Confidence 34678888889889999999975 3589999999999999999999999999999986
No 9
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=2.3e-19 Score=117.93 Aligned_cols=54 Identities=35% Similarity=0.603 Sum_probs=47.6
Q ss_pred EEEEEEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.++++|+++++++||++|.+. .+.|.+|||++++|||+.+||+||++||||+++
T Consensus 2 ~~~~ii~~~~~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~ 56 (121)
T cd04669 2 RASIVIINDQGEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDV 56 (121)
T ss_pred ceEEEEEeCCCEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeE
Confidence 366777787789999998753 378999999999999999999999999999996
No 10
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.82 E-value=3e-20 Score=122.59 Aligned_cols=109 Identities=22% Similarity=0.354 Sum_probs=71.6
Q ss_pred CEEEEEEEeCC---CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCC--ee
Q 033022 10 PNVGVCLINSD---SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA--VK 84 (129)
Q Consensus 10 ~~~~~~i~~~~---~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~--~~ 84 (129)
.++++++++.+ ++|||++|.+ .+.|.+|||++++|||+.+||.||++||||+++..+. .. ....+.++.. ..
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~-~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~-~~-~~~~~~~~~~~~~~ 78 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPR-GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGD-PL-GTIRYWFSSSGKRV 78 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCC-CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecc-eE-EEEEEeccCCCCCc
Confidence 56778787765 7999999986 3799999999999999999999999999999864221 11 1122333321 11
Q ss_pred EeEEEEecc-----------eeeeeeeeEEecccccCCCCcccccccc
Q 033022 85 TKVNRLWGG-----------EWHGQAQKWYASLLLLVPLTLSTHTHFM 121 (129)
Q Consensus 85 ~~~~~~~~~-----------~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 121 (129)
.....+|.. ..+..+..|++++.+...+.++.+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l 126 (131)
T cd03673 79 HKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELL 126 (131)
T ss_pred ceEEEEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHH
Confidence 112222211 1123567899888777666655554443
No 11
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=3.3e-19 Score=116.97 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=73.1
Q ss_pred cCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEE--eecC-ceEEeecCCCee-
Q 033022 9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII--AEVP-NWLTYDFPPAVK- 84 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~--~~~~-~~~~~~~~~~~~- 84 (129)
|.++++++++.++++||++|... |.|++|||++++|||+.+||+||++||||+++.... +... ....+.++....
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~-~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04676 2 LPGVTAVVRDDEGRVLLIRRSDN-GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGDVR 80 (129)
T ss_pred cceEEEEEECCCCeEEEEEecCC-CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCCcE
Confidence 56888888888889999999864 899999999999999999999999999999853211 1111 111223333221
Q ss_pred EeEEEEecce----------eeeeeeeEEecccccCCCCcccccccc
Q 033022 85 TKVNRLWGGE----------WHGQAQKWYASLLLLVPLTLSTHTHFM 121 (129)
Q Consensus 85 ~~~~~~~~~~----------~~~~~~~W~~~~~~~~~~~~~~~~~~~ 121 (129)
..+..++... .+..+.+|++++.+......+....++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~ 127 (129)
T cd04676 81 QYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRI 127 (129)
T ss_pred EEEEEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHh
Confidence 2222222211 134567899988776554444444443
No 12
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.82 E-value=7.6e-20 Score=123.97 Aligned_cols=56 Identities=30% Similarity=0.606 Sum_probs=49.1
Q ss_pred CEEEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022 10 PNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66 (129)
Q Consensus 10 ~~~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~ 66 (129)
+.+++++++.+ +++||++|.. ++.|++|||++++|||+.+||+||++||||+.+..
T Consensus 2 p~~gaii~~~~~~~vLLvr~~~-~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~ 58 (145)
T cd03672 2 PVYGAIILNEDLDKVLLVKGWK-SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISK 58 (145)
T ss_pred CeeEEEEEeCCCCEEEEEEecC-CCCEECCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence 36788888875 6999999875 45999999999999999999999999999998643
No 13
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.82 E-value=1.3e-19 Score=119.39 Aligned_cols=55 Identities=35% Similarity=0.545 Sum_probs=50.4
Q ss_pred CEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.+|+++|++.++++||+||..++|.|.+|||++++|||+.+||+||++||||+++
T Consensus 3 ~~v~~~i~~~~~~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~ 57 (125)
T cd04696 3 VTVGALIYAPDGRILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKL 57 (125)
T ss_pred cEEEEEEECCCCCEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcc
Confidence 4678888888899999998766799999999999999999999999999999986
No 14
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3.4e-19 Score=117.61 Aligned_cols=54 Identities=30% Similarity=0.593 Sum_probs=48.8
Q ss_pred EEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.+++++++.++++||++|.+ .++.|.+|||++++|||+++||+||++||||+++
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~ 57 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDC 57 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCee
Confidence 46778888889999999875 3589999999999999999999999999999996
No 15
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=3.5e-19 Score=116.40 Aligned_cols=53 Identities=32% Similarity=0.507 Sum_probs=45.3
Q ss_pred EEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 12 VGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 12 ~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
|+++|+++ +++||+||.. ++|.|++|||++++|||+++||+||++||||+++.
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 59 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPL 59 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcc
Confidence 44455554 7999999974 45899999999999999999999999999999953
No 16
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.81 E-value=2.1e-19 Score=120.59 Aligned_cols=56 Identities=34% Similarity=0.541 Sum_probs=50.8
Q ss_pred cCEEEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 9 RPNVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 9 ~~~~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
|.++++++++++ +++||++|.+ .|.|.+|||++++|||+++||.||++||||+++.
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~ 58 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRK-LGSWLQPGGHIDPDESLLEAALRELREETGIELL 58 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcC-CCcEECCceecCCCCCHHHHHHHHHHHHHCCCcc
Confidence 567888999887 8999999876 6899999999999999999999999999999853
No 17
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.81 E-value=4.3e-19 Score=116.62 Aligned_cols=54 Identities=31% Similarity=0.587 Sum_probs=47.9
Q ss_pred EEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
++.++|++. +++||++|.+. +|.|.+|||++++|||+.+||+||++||||+++.
T Consensus 2 ~~~~ii~~~-~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~ 57 (128)
T cd04684 2 GAYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVE 57 (128)
T ss_pred eeEEEEEeC-CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEee
Confidence 566777776 89999999874 5899999999999999999999999999999853
No 18
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.81 E-value=5.3e-19 Score=119.29 Aligned_cols=105 Identities=22% Similarity=0.349 Sum_probs=70.9
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE
Q 033022 8 YRPNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT 85 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
..++|++++++.++++||++|... +|.|++|||++++|||+++||+||++||||+++... ..... ..+.++....
T Consensus 12 ~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~-~~~~~-~~~~~~~~~~- 88 (142)
T cd04700 12 EARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV-KFLGT-YLGRFDDGVL- 88 (142)
T ss_pred eeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc-EEEEE-EEEEcCCCcE-
Confidence 456888899998889999988753 489999999999999999999999999999996332 21111 1223333221
Q ss_pred eEEEEecce-----------eeeeeeeEEecccccCCCCcc
Q 033022 86 KVNRLWGGE-----------WHGQAQKWYASLLLLVPLTLS 115 (129)
Q Consensus 86 ~~~~~~~~~-----------~~~~~~~W~~~~~~~~~~~~~ 115 (129)
.+.++|... -+..+.+||+++.+...+...
T Consensus 89 ~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 89 VLRHVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred EEEEEEEEEecCCccccCCCCCEEEEEEECHHHhhhccccc
Confidence 111222111 134578999988776554433
No 19
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=4.4e-19 Score=115.58 Aligned_cols=54 Identities=33% Similarity=0.516 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
++.+++++.++++||++|... +.|.+|||++++|||+++||+||++||||+.+.
T Consensus 2 ~~~~~i~~~~~~vLL~~r~~~-~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~ 55 (120)
T cd04680 2 GARAVVTDADGRVLLVRHTYG-PGWYLPGGGLERGETFAEAARRELLEELGIRLA 55 (120)
T ss_pred ceEEEEECCCCeEEEEEECCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccc
Confidence 678888998899999998763 499999999999999999999999999999964
No 20
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.81 E-value=4.5e-19 Score=118.27 Aligned_cols=108 Identities=22% Similarity=0.373 Sum_probs=67.7
Q ss_pred EEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCC-eeEeE
Q 033022 11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPA-VKTKV 87 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (129)
++.+++.++ +++||++|... +|.|.+|||++++|||+.+||+||++||||+++.... .. ....+..+.. .....
T Consensus 3 ~~~~~i~~~-~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~-~~-~~~~~~~~~~~~~~~~ 79 (137)
T cd03427 3 TTLCFIKDP-DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLK-LV-GIIKFPFPGEEERYGV 79 (137)
T ss_pred EEEEEEEEC-CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecce-EE-EEEEEEcCCCCcEEEE
Confidence 334444454 79999999864 6899999999999999999999999999999863221 11 2223333321 11111
Q ss_pred EEEecc--------eeeeeeeeEEecccccCCCCcccccccc
Q 033022 88 NRLWGG--------EWHGQAQKWYASLLLLVPLTLSTHTHFM 121 (129)
Q Consensus 88 ~~~~~~--------~~~~~~~~W~~~~~~~~~~~~~~~~~~~ 121 (129)
..+... ..+....+|++++.+........+..++
T Consensus 80 ~~f~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l 121 (137)
T cd03427 80 FVFLATEFEGEPLKESEEGILDWFDIDDLPLLPMWPGDREWL 121 (137)
T ss_pred EEEEECCcccccCCCCccccceEEcHhhcccccCCCCcHHHH
Confidence 122111 1223567899988776554444444443
No 21
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.81 E-value=3e-19 Score=120.06 Aligned_cols=55 Identities=33% Similarity=0.549 Sum_probs=47.0
Q ss_pred CEEEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 10 PNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+.+.+.+++.++++||+||+. ++|.|++|||++++|||+++||+||++||||+++
T Consensus 4 r~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (141)
T PRK15472 4 RTIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 62 (141)
T ss_pred eeEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCce
Confidence 455555555678999999874 3599999999999999999999999999999985
No 22
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=1.3e-18 Score=115.12 Aligned_cols=57 Identities=35% Similarity=0.629 Sum_probs=51.7
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 8 YRPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
++.++++++++.++++||++|... |.|.+|||++++|||+.+||+||++||||+++.
T Consensus 6 ~~~~~~~~v~~~~~~vLL~~r~~~-~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~ 62 (132)
T cd04677 6 ILVGAGVILLNEQGEVLLQKRSDT-GDWGLPGGAMELGESLEETARRELKEETGLEVE 62 (132)
T ss_pred cccceEEEEEeCCCCEEEEEecCC-CcEECCeeecCCCCCHHHHHHHHHHHHhCCeee
Confidence 567888888999899999999864 789999999999999999999999999999964
No 23
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.80 E-value=2.6e-19 Score=118.47 Aligned_cols=55 Identities=40% Similarity=0.600 Sum_probs=50.6
Q ss_pred CEEEEEEEeC--CCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 10 PNVGVCLINS--DSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 10 ~~~~~~i~~~--~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+.+++++++. ++++||++|.+. +|.|.+|||++++|||+.+||+||++||||+.+
T Consensus 2 ~~~~v~~~~~~~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~ 59 (129)
T cd04664 2 RSVLVVPYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDP 59 (129)
T ss_pred cEEEEEEEEeCCCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCCh
Confidence 5788888888 899999999874 799999999999999999999999999999986
No 24
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=3e-19 Score=117.86 Aligned_cols=56 Identities=36% Similarity=0.615 Sum_probs=50.9
Q ss_pred cCEEEEEEEeCCCcEEEEEEcC-CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 9 RPNVGVCLINSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+.+|+++|++.++++||++|.. ++|.|.+|||++++|||+.+||+||++||||+.+
T Consensus 2 ~~~~~~~v~~~~~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~ 58 (127)
T cd04670 2 TVGVGGLVLNEKNEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDT 58 (127)
T ss_pred eeEEEEEEEcCCCeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCc
Confidence 5688889999989999998765 3689999999999999999999999999999986
No 25
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=7.3e-19 Score=114.81 Aligned_cols=54 Identities=41% Similarity=0.689 Sum_probs=46.4
Q ss_pred EEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
+|+++|++ +++|||+||.+ .+|.|++|||++++|||+.+||+||++||||+.+.
T Consensus 2 ~v~~vi~~-~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~ 58 (120)
T cd04683 2 AVYVLLRR-DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLD 58 (120)
T ss_pred cEEEEEEE-CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccC
Confidence 45666665 47999999875 35899999999999999999999999999999853
No 26
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=5e-19 Score=117.01 Aligned_cols=57 Identities=35% Similarity=0.603 Sum_probs=52.0
Q ss_pred cCEEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 9 RPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
|.+++++|++.++++||++|.. .+|.|.+|||++++|||+.+||.||++||||+++.
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~ 60 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIE 60 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCccc
Confidence 5688899999989999999984 45899999999999999999999999999999963
No 27
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.80 E-value=7.9e-19 Score=119.00 Aligned_cols=56 Identities=39% Similarity=0.615 Sum_probs=48.9
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcCCC--CcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 8 YRPNVGVCLINSDSQIFVASRLNVP--GAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~~~--g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
...++++++...+ +|||+||.+.| |.|.+|||++|.|||+++||.||++||||+++
T Consensus 9 p~~~v~~~i~~~~-~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~ 66 (145)
T COG1051 9 PLVAVGALIVRNG-RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRV 66 (145)
T ss_pred cceeeeEEEEeCC-EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcc
Confidence 4456666666665 99999999865 88999999999999999999999999999994
No 28
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.80 E-value=2e-19 Score=118.95 Aligned_cols=55 Identities=33% Similarity=0.567 Sum_probs=47.9
Q ss_pred cCEEEEEEEeCCC---cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 9 RPNVGVCLINSDS---QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 9 ~~~~~~~i~~~~~---~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
+.++++++++.++ ++||++|++ +.|++|||++++|||+.+||+||++||||+.+.
T Consensus 2 ~~~~g~vi~~~~~~~~~vLl~~~~~--~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~ 59 (130)
T cd03428 2 ERSAGAIIYRRLNNEIEYLLLQASY--GHWDFPKGHVEPGEDDLEAALRETEEETGITAE 59 (130)
T ss_pred ceEEEEEEEEecCCCceEEEEEccC--CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChh
Confidence 3567777776554 799999886 899999999999999999999999999999964
No 29
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.6e-18 Score=114.66 Aligned_cols=55 Identities=31% Similarity=0.422 Sum_probs=47.8
Q ss_pred cCEEEEEEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 9 RPNVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
|.+|+++|++ ++++||++|.+. ++.|.+|||++++|||+++||+||++||||+.+
T Consensus 1 r~~a~~iv~~-~~~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v 56 (128)
T cd04687 1 RNSAKAVIIK-NDKILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDV 56 (128)
T ss_pred CcEEEEEEEE-CCEEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcc
Confidence 4577777776 469999998753 368999999999999999999999999999996
No 30
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.79 E-value=4.3e-19 Score=117.03 Aligned_cols=57 Identities=47% Similarity=0.876 Sum_probs=53.1
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcCCC----CcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 8 YRPNVGVCLINSDSQIFVASRLNVP----GAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~~~----g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+|++|++++++.++++||++|.+.+ +.|.+|||++++|||+.+||+||++||||+++
T Consensus 1 ~~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~ 61 (134)
T PF00293_consen 1 WRRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDV 61 (134)
T ss_dssp EEEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEE
T ss_pred CCCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhccccee
Confidence 4789999999999999999999754 89999999999999999999999999999996
No 31
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=8.5e-19 Score=115.90 Aligned_cols=57 Identities=32% Similarity=0.479 Sum_probs=50.8
Q ss_pred CEEEEEEEeCCCcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022 10 PNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSAE 66 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~~~ 66 (129)
+++.+++++.+++|||++|.. .+|.|++ |||++++||++.+||+||++||||+.+..
T Consensus 1 ~~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~ 62 (126)
T cd04697 1 RATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQ 62 (126)
T ss_pred CeEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccc
Confidence 368889999999999999873 4689999 68999999999999999999999999643
No 32
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.2e-18 Score=114.31 Aligned_cols=53 Identities=36% Similarity=0.616 Sum_probs=45.4
Q ss_pred EEEEEEEeCCCcEEEEEEcC-----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSDSQIFVASRLN-----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~-----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
++++++++ ++++||++|.. ++|.|.+|||+++.|||+++||+||++||||+++
T Consensus 3 v~~~~~~~-~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~ 60 (122)
T cd04682 3 VALALLIG-DGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTL 60 (122)
T ss_pred eEEEEEEc-CCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcc
Confidence 34445555 48999999975 3589999999999999999999999999999986
No 33
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.1e-18 Score=116.02 Aligned_cols=104 Identities=22% Similarity=0.342 Sum_probs=66.5
Q ss_pred eCCCcEEEEEEcC-CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeEEEEecc---
Q 033022 18 NSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRLWGG--- 93 (129)
Q Consensus 18 ~~~~~vLl~~r~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 93 (129)
+.++++||++|.. .+|.|.+|||++++|||+.+||+||++||||+++..+.........|..+.... ....++..
T Consensus 11 ~~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~ 89 (131)
T cd04695 11 DKETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRI-LMAPVFVGFVP 89 (131)
T ss_pred CCCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceE-EEEEEEEEEec
Confidence 4567999999985 468999999999999999999999999999999643311100011122222111 11111111
Q ss_pred -------eeeeeeeeEEecccccCCCCccccccccc
Q 033022 94 -------EWHGQAQKWYASLLLLVPLTLSTHTHFMK 122 (129)
Q Consensus 94 -------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 122 (129)
..+..+.+|++++.+...+..+.+..+++
T Consensus 90 ~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~ 125 (131)
T cd04695 90 PHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYD 125 (131)
T ss_pred CCCccccCchhcccEecCHHHHHHhcCChhHHHHHH
Confidence 12346778998887776666666555443
No 34
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.78 E-value=3.7e-18 Score=112.34 Aligned_cols=54 Identities=24% Similarity=0.404 Sum_probs=46.7
Q ss_pred CEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
..|+++|++ ++++||++|.. .+.|.+|||++++|||+.+||+||++||||+++.
T Consensus 2 ~~~~~vi~~-~~~vLlv~~~~-~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~ 55 (125)
T cd04689 2 LRARAIVRA-GNKVLLARVIG-QPHYFLPGGHVEPGETAENALRRELQEELGVAVS 55 (125)
T ss_pred eEEEEEEEe-CCEEEEEEecC-CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceee
Confidence 456677765 56999999875 5789999999999999999999999999999863
No 35
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=3.9e-18 Score=111.29 Aligned_cols=53 Identities=38% Similarity=0.670 Sum_probs=46.4
Q ss_pred EEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+++++++++ +++||++|.+ +++.|.+|||++++|||+++||.||++||||+++
T Consensus 2 ~v~~ii~~~-~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~ 56 (122)
T cd04673 2 AVGAVVFRG-GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEA 56 (122)
T ss_pred cEEEEEEEC-CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEe
Confidence 466677765 6999999985 3578999999999999999999999999999995
No 36
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.78 E-value=2.6e-18 Score=114.02 Aligned_cols=55 Identities=29% Similarity=0.459 Sum_probs=46.5
Q ss_pred cCEEEEEEEeCCCcEEEEEEcC--CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 9 RPNVGVCLINSDSQIFVASRLN--VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~--~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+.++++++++. +++||++|.. ..|.|++|||++++||++++||+||++||||+++
T Consensus 13 ~~~v~~ii~~~-~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~ 69 (130)
T cd04511 13 KIIVGCVPEWE-GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARV 69 (130)
T ss_pred cEEEEEEEecC-CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEE
Confidence 44555565555 7999999974 3479999999999999999999999999999985
No 37
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3.4e-18 Score=111.22 Aligned_cols=54 Identities=28% Similarity=0.484 Sum_probs=47.7
Q ss_pred EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
.+++++++.++++||++|.. .+.|.+|||++++|||+++||+||++||||+.+.
T Consensus 2 ~~~~~v~~~~~~vLl~~r~~-~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~ 55 (118)
T cd04690 2 IAAALILVRDGRVLLVRKRG-TDVFYLPGGKIEAGETPLQALIRELSEELGLDLD 55 (118)
T ss_pred eEEEEEEecCCeEEEEEECC-CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccC
Confidence 35667778888999999875 5789999999999999999999999999999853
No 38
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=9.2e-18 Score=110.32 Aligned_cols=54 Identities=24% Similarity=0.533 Sum_probs=48.1
Q ss_pred cCEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 9 RPNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+..|+++|+++ +++||++|.+ .|.|.+|||++++|||+.+||+||++||||+.+
T Consensus 2 ~~~v~~~i~~~-~~vLL~~~~~-~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~ 55 (123)
T cd04672 2 KVDVRAAIFKD-GKILLVREKS-DGLWSLPGGWADVGLSPAENVVKEVKEETGLDV 55 (123)
T ss_pred cceEEEEEEEC-CEEEEEEEcC-CCcEeCCccccCCCCCHHHHHHHHHHHHhCCee
Confidence 35677777776 7999999876 689999999999999999999999999999985
No 39
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=8.1e-18 Score=110.86 Aligned_cols=52 Identities=29% Similarity=0.508 Sum_probs=44.5
Q ss_pred EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.|.++++++ +++||++|.+ .+.|.+|||++++|||+.+||.||++||||+++
T Consensus 3 ~v~~vi~~~-~~vLl~~~~~-~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~ 54 (126)
T cd04688 3 RAAAIIIHN-GKLLVQKNPD-ETFYRPPGGGIEFGESSEEALIREFKEELGLKI 54 (126)
T ss_pred EEEEEEEEC-CEEEEEEeCC-CCeEECCCccccCCCCHHHHHHHHHHHHhCCce
Confidence 344555554 4999999876 679999999999999999999999999999985
No 40
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.77 E-value=4e-18 Score=112.38 Aligned_cols=53 Identities=30% Similarity=0.560 Sum_probs=45.4
Q ss_pred EEEEEEEeCC---CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSD---SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~---~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.+++++++.+ +++||++|.+ .+.|.+|||++++|||+.+||+||++||||++.
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~-~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~ 57 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRR-TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRG 57 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecC-CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcc
Confidence 4566666543 6899999875 378999999999999999999999999999985
No 41
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.77 E-value=3.7e-18 Score=113.90 Aligned_cols=58 Identities=33% Similarity=0.466 Sum_probs=51.6
Q ss_pred cCEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022 9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~ 66 (129)
+++|++++++.++++||+++.+ .++.|++|||++++|||+.+||+||++||||+.+..
T Consensus 2 ~~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~ 62 (137)
T cd03424 2 PDAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGD 62 (137)
T ss_pred CCEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccc
Confidence 5789999999999999998764 246899999999999999999999999999999743
No 42
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=1.8e-18 Score=114.21 Aligned_cols=53 Identities=36% Similarity=0.688 Sum_probs=48.0
Q ss_pred EEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+|.+++++.+++|||++|.. ++|.|++| ||++++|||+ +||+||++||||+++
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~ 59 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLEL 59 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCc
Confidence 67788899989999999884 46899998 8999999999 999999999999995
No 43
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.77 E-value=1.8e-18 Score=119.35 Aligned_cols=57 Identities=35% Similarity=0.470 Sum_probs=52.1
Q ss_pred cCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 9 RPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
|.+++++|++.++++||++|+. +||.|++| ||++++|||+++||+||++||||+.+.
T Consensus 30 ~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~ 91 (165)
T cd02885 30 HRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGD 91 (165)
T ss_pred eeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcc
Confidence 8889999999999999999984 57999996 899999999999999999999999963
No 44
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=2.2e-18 Score=116.28 Aligned_cols=57 Identities=30% Similarity=0.570 Sum_probs=51.7
Q ss_pred CcCEEEEEEEeCC---CcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 8 YRPNVGVCLINSD---SQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 8 ~~~~~~~~i~~~~---~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+|+++.+.|++.+ +++|+++|+. +||.|++ |||++++|||+.+||+||++||||+.+
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~ 65 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDV 65 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCC
Confidence 5789999999987 8999999984 5689999 599999999999999999999999974
No 45
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.76 E-value=4.4e-18 Score=116.61 Aligned_cols=55 Identities=33% Similarity=0.593 Sum_probs=46.8
Q ss_pred EEEEEEEeCC--CcEEEEEEcC----CCCcEEcCeeecCCC-CCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSD--SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~--~~vLl~~r~~----~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~ 65 (129)
++.+++.+.+ ++|||++|.. ++|.|++|||++++| ||+.+||+||++||||+++.
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~ 65 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPD 65 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCcc
Confidence 4445555555 6899999985 468999999999999 99999999999999999964
No 46
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.76 E-value=3.2e-18 Score=114.00 Aligned_cols=56 Identities=32% Similarity=0.488 Sum_probs=49.6
Q ss_pred EEEEEEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022 11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~ 66 (129)
+|.+.+.+.++++||++|..+ +|.|++|||++++|||+.+||.||++||||+++..
T Consensus 2 ~v~i~l~~~~~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~ 58 (131)
T cd03429 2 AVIVLVIDGGDRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKN 58 (131)
T ss_pred eEEEEEEeCCCEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeee
Confidence 566777788789999999865 58999999999999999999999999999999643
No 47
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.75 E-value=1.7e-17 Score=110.37 Aligned_cols=97 Identities=29% Similarity=0.345 Sum_probs=62.4
Q ss_pred EEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeE-
Q 033022 12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV- 87 (129)
Q Consensus 12 ~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (129)
+..++++.++++||++|.+ ++|.|++|||++++|||+.+||+||++||||+++.. .... ....+.+........
T Consensus 6 ~~~~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~-~~~~-~~~~~~~~~~~~~~~~ 83 (135)
T PRK10546 6 VVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATV-GEYV-ASHQREVSGRRIHLHA 83 (135)
T ss_pred EEEEEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCcccc-ceeE-EEEEEecCCcEEEEEE
Confidence 3334446678999999974 358999999999999999999999999999998532 1111 122344444322211
Q ss_pred --EEEeccee---eeeeeeEEecccccC
Q 033022 88 --NRLWGGEW---HGQAQKWYASLLLLV 110 (129)
Q Consensus 88 --~~~~~~~~---~~~~~~W~~~~~~~~ 110 (129)
+..+.+.. +....+|++++.+..
T Consensus 84 ~~~~~~~~~~~~~e~~~~~W~~~~el~~ 111 (135)
T PRK10546 84 WHVPDFHGELQAHEHQALVWCTPEEALR 111 (135)
T ss_pred EEEEEecCcccccccceeEEcCHHHccc
Confidence 11111221 245678999876654
No 48
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.75 E-value=2.9e-17 Score=107.91 Aligned_cols=98 Identities=33% Similarity=0.536 Sum_probs=65.8
Q ss_pred CEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEe
Q 033022 10 PNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTK 86 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 86 (129)
..++++|.+.++++||+||.. ++|.|++|||++++||++.+||.||++||||+++... ... ....|.+++....
T Consensus 5 ~~~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~-~~~-~~~~~~~~~~~~~- 81 (129)
T PRK10776 5 QIAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA-TLF-EKLEYEFPDRHIT- 81 (129)
T ss_pred EEEEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc-eEE-EEEEeeCCCcEEE-
Confidence 345556677778999999985 3589999999999999999999999999999985321 111 1234555554322
Q ss_pred EEEEec----cee---eeeeeeEEecccccC
Q 033022 87 VNRLWG----GEW---HGQAQKWYASLLLLV 110 (129)
Q Consensus 87 ~~~~~~----~~~---~~~~~~W~~~~~~~~ 110 (129)
+..+.. +.. +..+.+|++.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 112 (129)
T PRK10776 82 LWFWLVESWEGEPWGKEGQPGRWVSQVALNA 112 (129)
T ss_pred EEEEEEEEECCccCCccCCccEEecHHHCcc
Confidence 111111 111 234567998876654
No 49
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.75 E-value=8e-18 Score=117.77 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=49.8
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcC----CCCcE-EcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 8 YRPNVGVCLINSDSQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w-~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
.++++.++|+|.++++||++|.. +||.| .+|||++++|||+.+||+||++||||+.+.
T Consensus 36 ~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~ 98 (180)
T PRK15393 36 RHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGV 98 (180)
T ss_pred ceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCc
Confidence 46677788889889999999974 35666 589999999999999999999999999853
No 50
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.75 E-value=1.5e-17 Score=110.52 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=43.6
Q ss_pred EEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 15 CLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 15 ~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+++..++++||++|.+. ++.|.+|||++++|||+.+||.||++||||+++
T Consensus 5 ~ii~~~~~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~ 55 (134)
T cd03675 5 AVVERDGRFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHV 55 (134)
T ss_pred EEEEECCEEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCccc
Confidence 34455679999998864 368999999999999999999999999999996
No 51
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=2.4e-17 Score=108.36 Aligned_cols=56 Identities=32% Similarity=0.600 Sum_probs=49.2
Q ss_pred CEEEEEEEeCCCcEEEEEEcCC----CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 10 PNVGVCLINSDSQIFVASRLNV----PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r~~~----~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
.+++++|.++++++||++|... +|.|++|||++++|||+.+||+||++||||+.+.
T Consensus 2 ~~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~ 61 (129)
T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVT 61 (129)
T ss_pred ceEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEE
Confidence 3667777787789999999852 6899999999999999999999999999999863
No 52
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=1.6e-17 Score=110.49 Aligned_cols=52 Identities=33% Similarity=0.583 Sum_probs=46.1
Q ss_pred EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+|+++|+++ ++|||+++.+ .+.|.+|||++++|||+.+||+||++||||+.+
T Consensus 2 ~~~~ii~~~-~~vLLv~~~~-~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~ 53 (131)
T cd04686 2 AVRAIILQG-DKILLLYTKR-YGDYKFPGGGVEKGEDHIEGLIRELQEETGATN 53 (131)
T ss_pred cEEEEEEEC-CEEEEEEEcC-CCcEECccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 567777775 6999999876 468999999999999999999999999999985
No 53
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.74 E-value=1.6e-17 Score=116.60 Aligned_cols=60 Identities=27% Similarity=0.444 Sum_probs=52.8
Q ss_pred CCcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022 7 GYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSAE 66 (129)
Q Consensus 7 ~~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~~ 66 (129)
.+|+++++++++.+++|||+||+. +||.|.+| ||++++|||+++||+||++||||+++..
T Consensus 32 ~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~ 96 (184)
T PRK03759 32 PLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITD 96 (184)
T ss_pred CeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence 378889999999999999999863 57889876 7999999999999999999999999643
No 54
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=4.3e-17 Score=107.25 Aligned_cols=101 Identities=24% Similarity=0.243 Sum_probs=66.2
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCee
Q 033022 8 YRPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK 84 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 84 (129)
.+..+++++++.++++||.+|.. .+|.|++|||++++|||+.+||+||++||||+++.. ... .....+.++....
T Consensus 3 ~~~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~-~~~-~~~~~h~~~~~~~ 80 (128)
T TIGR00586 3 LQQIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHF-SEF-EKLEYEFYPRHIT 80 (128)
T ss_pred eEEEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccee-eeE-EEEEEEECCCcEE
Confidence 34456666678888999999975 358999999999999999999999999999998521 111 1123344444322
Q ss_pred EeEEEE----eccee---eeeeeeEEecccccCC
Q 033022 85 TKVNRL----WGGEW---HGQAQKWYASLLLLVP 111 (129)
Q Consensus 85 ~~~~~~----~~~~~---~~~~~~W~~~~~~~~~ 111 (129)
. +..+ ..+.. ......|++++.+...
T Consensus 81 ~-~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 81 L-WFWLLERWEGGPPGKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred E-EEEEEEEEcCCCcCcccccccEEeCHHHCCcc
Confidence 1 1111 11111 2345689998766553
No 55
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=4e-17 Score=105.61 Aligned_cols=48 Identities=35% Similarity=0.659 Sum_probs=42.7
Q ss_pred EeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022 17 INSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66 (129)
Q Consensus 17 ~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~ 66 (129)
...++++||++|.. |.|.+|||++++|||+.+||.||++||||+++..
T Consensus 7 ~~~~~~vLlv~r~~--~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~ 54 (112)
T cd04667 7 CRRGGRVLLVRKSG--SRWALPGGKIEPGETPLQAARRELQEETGLQGLD 54 (112)
T ss_pred EecCCEEEEEEcCC--CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccc
Confidence 34567999999875 8999999999999999999999999999998643
No 56
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=4.9e-17 Score=109.98 Aligned_cols=55 Identities=38% Similarity=0.621 Sum_probs=49.9
Q ss_pred EEEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
.+++++++.++++||+||.. ++|.|++|||++++||++.+||+||++||+|+.+.
T Consensus 3 ~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~ 61 (143)
T cd04694 3 GVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLD 61 (143)
T ss_pred EEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence 57778889999999999984 56899999999999999999999999999999863
No 57
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.73 E-value=3.5e-17 Score=109.11 Aligned_cols=45 Identities=29% Similarity=0.453 Sum_probs=40.3
Q ss_pred CCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 20 DSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 20 ~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
++++||+++... .|.|.||||++|+|||+.+||+||++||||+.+
T Consensus 12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v 57 (132)
T cd04661 12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNL 57 (132)
T ss_pred CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCc
Confidence 468999998753 479999999999999999999999999999974
No 58
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.72 E-value=3.3e-17 Score=112.39 Aligned_cols=57 Identities=33% Similarity=0.462 Sum_probs=50.7
Q ss_pred CCcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 7 GYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 7 ~~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
-+|++++++|++.++++||+||+. +||.|++| ||++++|| .+||+||++||||+++.
T Consensus 25 ~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~ 86 (158)
T TIGR02150 25 PLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPAD 86 (158)
T ss_pred CeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCcc
Confidence 378899999999999999999984 57999997 79999999 49999999999999863
No 59
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.70 E-value=1.3e-16 Score=117.17 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=65.0
Q ss_pred cCEEEEEEEeCCCcEEEEEEcCCC-CcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE-e
Q 033022 9 RPNVGVCLINSDSQIFVASRLNVP-GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT-K 86 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~~~-g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~-~ 86 (129)
.++|.++| .+++++||++|.+.+ |.|++|||++|+|||+++||+||++||||+++..+.... ...+.++..... +
T Consensus 132 ~paViv~V-~~~~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~--s~~~~~p~~lm~~f 208 (256)
T PRK00241 132 APCIIVAV-RRGDEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVG--SQPWPFPHSLMLGF 208 (256)
T ss_pred CCEEEEEE-EeCCEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEE--eEeecCCCeEEEEE
Confidence 34544444 455799999988644 899999999999999999999999999999864432211 112344433221 2
Q ss_pred EEEEecce-----eeeeeeeEEecccccCC
Q 033022 87 VNRLWGGE-----WHGQAQKWYASLLLLVP 111 (129)
Q Consensus 87 ~~~~~~~~-----~~~~~~~W~~~~~~~~~ 111 (129)
...+..+. .+..+.+||+++.++..
T Consensus 209 ~a~~~~~~~~~~~~Ei~~a~W~~~del~~l 238 (256)
T PRK00241 209 HADYDSGEIVFDPKEIADAQWFRYDELPLL 238 (256)
T ss_pred EEEecCCcccCCcccEEEEEEECHHHCccc
Confidence 22222222 12357789998876543
No 60
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=2.4e-16 Score=105.37 Aligned_cols=55 Identities=42% Similarity=0.697 Sum_probs=50.1
Q ss_pred CEEEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 10 PNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+++.+++++.+++|||+++.+ .++.|.+|||++++||++.+||.||++||||+.+
T Consensus 1 ~~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~ 59 (133)
T cd04685 1 RAARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITV 59 (133)
T ss_pred CeEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcc
Confidence 478899999999999998874 3479999999999999999999999999999986
No 61
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.69 E-value=2.3e-16 Score=120.12 Aligned_cols=54 Identities=31% Similarity=0.540 Sum_probs=46.0
Q ss_pred CEEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 10 PNVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.++.++|+. +++|||++|.+. +|.|.+|||++++|||+++||+||++||||+++
T Consensus 204 vtv~avv~~-~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v 259 (340)
T PRK05379 204 VTVDAVVVQ-SGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKL 259 (340)
T ss_pred eEEEEEEEE-CCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 455555554 579999999864 478999999999999999999999999999985
No 62
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.68 E-value=7.2e-16 Score=100.15 Aligned_cols=96 Identities=31% Similarity=0.460 Sum_probs=63.9
Q ss_pred EEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeE
Q 033022 11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKV 87 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (129)
.+.+++.+.++++||++|.+ ++|.|++|||+++++|++.+||.||++||||+++... ... ....+.++.....
T Consensus 3 ~~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~-~~~-~~~~~~~~~~~~~-- 78 (124)
T cd03425 3 VVAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVG-ELL-ATVEHDYPDKRVT-- 78 (124)
T ss_pred EEEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEecc-ceE-EEEEeeCCCCeEE--
Confidence 34455667768999999874 4689999999999999999999999999999985321 111 1223444432221
Q ss_pred EEEecc-----e---eeeeeeeEEecccccC
Q 033022 88 NRLWGG-----E---WHGQAQKWYASLLLLV 110 (129)
Q Consensus 88 ~~~~~~-----~---~~~~~~~W~~~~~~~~ 110 (129)
..++.. . .+.....|++++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 109 (124)
T cd03425 79 LHVFLVELWSGEPQLLEHQELRWVPPEELDD 109 (124)
T ss_pred EEEEEEeeeCCCcccccCceEEEeeHHHccc
Confidence 111111 1 1245678999876654
No 63
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.67 E-value=1.7e-15 Score=97.62 Aligned_cols=55 Identities=38% Similarity=0.773 Sum_probs=48.9
Q ss_pred EEEEEEEeCCCcEEEEEEcCC-CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSDSQIFVASRLNV-PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~-~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
++++++++.++++||++|... +|.|.+|+|+++.||++.+||+||+.||+|+.+.
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~ 57 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVD 57 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccce
Confidence 567777788789999999863 6899999999999999999999999999999853
No 64
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.66 E-value=6.9e-16 Score=108.36 Aligned_cols=57 Identities=30% Similarity=0.423 Sum_probs=48.5
Q ss_pred EEEEEEEeCCCcEEEEEEcCC---CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE
Q 033022 11 NVGVCLINSDSQIFVASRLNV---PGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~---~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~ 67 (129)
+|.++.+++++++||+++.+. .+.|++|||.+|+||++++||+||++||||+.+..+
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l 108 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQL 108 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcce
Confidence 566666777789999998753 357999999999999999999999999999996443
No 65
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.64 E-value=3e-15 Score=105.62 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=46.5
Q ss_pred CcCEEEEEEEe--CCCcEEEEEEcC----CCCcEEcCeeecCCC-CCHHHHHHHHHHHHhCCceee
Q 033022 8 YRPNVGVCLIN--SDSQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVSAE 66 (129)
Q Consensus 8 ~~~~~~~~i~~--~~~~vLl~~r~~----~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~~~ 66 (129)
.+.++.++.+. .++.+||.+|+. ++|.|+||||++|++ |++++||+||++||||+....
T Consensus 29 ~~~aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~ 94 (190)
T PRK10707 29 QRQAAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSA 94 (190)
T ss_pred CCCeEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccc
Confidence 45566666452 345899988773 458999999999985 689999999999999999643
No 66
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.64 E-value=3.5e-15 Score=97.90 Aligned_cols=52 Identities=33% Similarity=0.484 Sum_probs=43.8
Q ss_pred EEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022 12 VGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66 (129)
Q Consensus 12 ~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~ 66 (129)
|.+++++ ++++||+++.. +.|.+|||++++||++++||+||++||||+.+..
T Consensus 3 v~vi~~~-~~~vLl~~~~~--~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~ 54 (118)
T cd04665 3 VLVICFY-DDGLLLVRHKD--RGWEFPGGHVEPGETIEEAARREVWEETGAELGS 54 (118)
T ss_pred EEEEEEE-CCEEEEEEeCC--CEEECCccccCCCCCHHHHHHHHHHHHHCCccCc
Confidence 4445555 46999998873 6799999999999999999999999999999633
No 67
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=1.1e-14 Score=95.53 Aligned_cols=53 Identities=38% Similarity=0.345 Sum_probs=42.5
Q ss_pred EEEEEEEeCCCcEEEEEEcCC--CCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSDSQIFVASRLNV--PGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~--~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.+++++...+ ++||++|... +|.|.+|||++++|||+.+||+||++||||+++
T Consensus 6 ~av~vl~~~~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~ 60 (118)
T cd04674 6 VVVALLPVDD-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAV 60 (118)
T ss_pred EEEEEEEECC-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcc
Confidence 4444454544 5677677643 489999999999999999999999999999985
No 68
>PRK08999 hypothetical protein; Provisional
Probab=99.61 E-value=5.4e-15 Score=111.10 Aligned_cols=100 Identities=29% Similarity=0.384 Sum_probs=67.5
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCee
Q 033022 8 YRPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVK 84 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 84 (129)
.+..++++|++.++++||.||.. ++|.|++|||++++||++.+||.||++||||+.+.... .. ....+.++....
T Consensus 4 ~~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~-~l-~~~~h~~~~~~~ 81 (312)
T PRK08999 4 RIHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAAR-PL-ITVRHDYPDKRV 81 (312)
T ss_pred eeEEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecce-eE-EEEEEEcCCCeE
Confidence 44556666777778999999974 45899999999999999999999999999999853221 11 123445554432
Q ss_pred EeEEEEec----cee---eeeeeeEEecccccC
Q 033022 85 TKVNRLWG----GEW---HGQAQKWYASLLLLV 110 (129)
Q Consensus 85 ~~~~~~~~----~~~---~~~~~~W~~~~~~~~ 110 (129)
. +..|.. +.. +....+|++.+.+..
T Consensus 82 ~-i~~y~~~~~~~~~~~~e~~~~~Wv~~~el~~ 113 (312)
T PRK08999 82 R-LDVRRVTAWQGEPHGREGQPLAWVAPDELAV 113 (312)
T ss_pred E-EEEEEEEEecCcccCccCCccEEecHHHccc
Confidence 2 222221 111 245668999876654
No 69
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.61 E-value=8.9e-15 Score=96.70 Aligned_cols=55 Identities=36% Similarity=0.626 Sum_probs=44.9
Q ss_pred EEEEEEEeCC---CcEEEEEEc------CCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSD---SQIFVASRL------NVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~---~~vLl~~r~------~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
++++++++.+ .+|||++|. ...+.|++|||+++.||++.+||+||++||||+.+.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 5667766432 369999863 335889999999999999999999999999999853
No 70
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.61 E-value=1.6e-14 Score=95.63 Aligned_cols=52 Identities=33% Similarity=0.540 Sum_probs=41.7
Q ss_pred EEEEEEEeCCC--cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSDS--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~--~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.|.++|.+.++ ++|+.+... +.|.+|||++++|||+.+||+||++||||+.+
T Consensus 2 ~~~~~~~~~~~~~~ll~~r~~~--~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 2 KCPAVLRRNGEVLELLVFEHPL--AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEEeCCceEEEEEEEcCC--CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 35555555554 666665543 56999999999999999999999999999995
No 71
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.60 E-value=2.5e-15 Score=99.93 Aligned_cols=60 Identities=35% Similarity=0.622 Sum_probs=53.4
Q ss_pred CCCCcCEEEEEEEeCCC---cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 5 PSGYRPNVGVCLINSDS---QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 5 ~~~~~~~~~~~i~~~~~---~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
|+|+|..++++++..++ +|||+..++.+-.|.+|+|++|++|+..+||.||+.||.|+.-
T Consensus 5 ~~G~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G 67 (145)
T KOG2839|consen 5 PAGFRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKG 67 (145)
T ss_pred CCCcEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcee
Confidence 47899988888776554 7999999887778999999999999999999999999999983
No 72
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.60 E-value=5.8e-15 Score=103.10 Aligned_cols=58 Identities=26% Similarity=0.465 Sum_probs=49.6
Q ss_pred CcCEEEEE--EEeCC--CcEEEEEEcC----CCCcE-EcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 8 YRPNVGVC--LINSD--SQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 8 ~~~~~~~~--i~~~~--~~vLl~~r~~----~~g~w-~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
+|+++.+. +.|.+ +++|++||+. +||.| .+|+|++++|||+.+||+||++||||++..
T Consensus 31 ~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~ 97 (180)
T cd03676 31 VTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPED 97 (180)
T ss_pred eEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHH
Confidence 67778864 44655 7999999994 68999 599999999999999999999999999853
No 73
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.59 E-value=6.5e-15 Score=103.53 Aligned_cols=59 Identities=24% Similarity=0.372 Sum_probs=48.9
Q ss_pred cCEEEEEEEeCC-CcEEEEEEcC--------CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE
Q 033022 9 RPNVGVCLINSD-SQIFVASRLN--------VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67 (129)
Q Consensus 9 ~~~~~~~i~~~~-~~vLl~~r~~--------~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~ 67 (129)
..+|++++++.+ +++||+++.+ .+..|++|+|++++||++++||+||++||||+.+..+
T Consensus 44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~ 111 (185)
T TIGR00052 44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNL 111 (185)
T ss_pred CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecce
Confidence 346777777654 7999999875 2357899999999999999999999999999997544
No 74
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.57 E-value=3.3e-14 Score=101.19 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=49.3
Q ss_pred CEEEEEEEeCC-CcEEEEEEcCCC--------CcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEE
Q 033022 10 PNVGVCLINSD-SQIFVASRLNVP--------GAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68 (129)
Q Consensus 10 ~~~~~~i~~~~-~~vLl~~r~~~~--------g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~ 68 (129)
.+|+++.++.+ ++++|+++.+.+ -.|++|+|.+|+||++++||+||+.||||+.+..+.
T Consensus 50 ~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~ 117 (202)
T PRK10729 50 HAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTK 117 (202)
T ss_pred CeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEE
Confidence 46777777764 799999998754 259999999999999999999999999999975543
No 75
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.57 E-value=3.6e-14 Score=97.08 Aligned_cols=55 Identities=33% Similarity=0.431 Sum_probs=44.4
Q ss_pred CEEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE
Q 033022 10 PNVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~ 67 (129)
..|.++.+.+ +++||+++.. ..|++|||++|+|||+++||+||++||||+.+..+
T Consensus 25 ~~V~ii~~~~-~~~LL~~~~~--~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~ 79 (156)
T TIGR02705 25 NHVLVIPRYK-DQWLLTEHKR--RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKEL 79 (156)
T ss_pred CEEEEEEEEC-CEEEEEEEcC--CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeee
Confidence 3555555554 4899988765 45999999999999999999999999999986433
No 76
>PLN02709 nudix hydrolase
Probab=99.50 E-value=2e-13 Score=97.93 Aligned_cols=53 Identities=28% Similarity=0.483 Sum_probs=44.6
Q ss_pred CcEEEEEEcC----CCCcEEcCeeecCCC-CCHHHHHHHHHHHHhCCce--eeEEeecCc
Q 033022 21 SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVS--AEIIAEVPN 73 (129)
Q Consensus 21 ~~vLl~~r~~----~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~--~~~~~~~~~ 73 (129)
.++||.+|+. ++|.|+||||++|++ +++.+||+||+.||+|+.. ..+++.+..
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~ 110 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEP 110 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCC
Confidence 3899999985 579999999999997 5789999999999999986 355655554
No 77
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.45 E-value=2.7e-13 Score=89.39 Aligned_cols=54 Identities=37% Similarity=0.604 Sum_probs=43.8
Q ss_pred EEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHH-HHHHHHHHHhCCcee
Q 033022 12 VGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKL-AAMRELREETGIVSA 65 (129)
Q Consensus 12 ~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~-aa~RE~~EEtGl~~~ 65 (129)
+.+++.... +++|+.+|....+.|.+|||++++||++.+ ||+||++||||+.+.
T Consensus 14 ~~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~ 69 (161)
T COG0494 14 VAVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK 69 (161)
T ss_pred EEEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence 333333333 789999988744599999999999999998 999999999999864
No 78
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.44 E-value=3.4e-13 Score=99.89 Aligned_cols=61 Identities=34% Similarity=0.438 Sum_probs=48.9
Q ss_pred CcCEEEEEEEeCCCcE-EEEEEcC-CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEE
Q 033022 8 YRPNVGVCLINSDSQI-FVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEII 68 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~v-Ll~~r~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~ 68 (129)
.-+.|.++|++.+++. ||.|..+ .+|.|..++|.+|+|||++|||+||++||||+++..+.
T Consensus 186 ~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~ 248 (345)
T KOG3084|consen 186 TDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVIS 248 (345)
T ss_pred CCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEe
Confidence 4456777888888654 5555444 34899999999999999999999999999999975543
No 79
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.44 E-value=1.2e-12 Score=91.86 Aligned_cols=41 Identities=29% Similarity=0.489 Sum_probs=37.7
Q ss_pred cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022 22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63 (129)
Q Consensus 22 ~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~ 63 (129)
++|+++|.. .|.|.+|||++++||++.+||.||++||||+.
T Consensus 50 ~vLl~~r~~-~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 50 QFVAIKRPD-SGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred EEEEEEeCC-CCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 788899875 68999999999999999999999999999764
No 80
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.42 E-value=1.8e-12 Score=91.51 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=47.8
Q ss_pred CEEEEEEEeC-CCcEEEEEEcCCC-------C--cEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEe
Q 033022 10 PNVGVCLINS-DSQIFVASRLNVP-------G--AWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69 (129)
Q Consensus 10 ~~~~~~i~~~-~~~vLl~~r~~~~-------g--~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~ 69 (129)
.+|++++++. +++++|+++.+.+ + .|++|+|.+++| ++++||+||++||||+.+..+..
T Consensus 46 ~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~ 114 (191)
T PRK15009 46 NGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRK 114 (191)
T ss_pred CEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEE
Confidence 4677777776 5799999998744 3 489999999976 79999999999999999755543
No 81
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.42 E-value=2.8e-13 Score=99.50 Aligned_cols=99 Identities=26% Similarity=0.399 Sum_probs=68.3
Q ss_pred CEEEEEEEeCCCcEEEEEEcC-CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeE-eE
Q 033022 10 PNVGVCLINSDSQIFVASRLN-VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKT-KV 87 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~-~~ 87 (129)
++|-+++++.+ ++||.++.+ .+|.+++-+|.||+|||+++|+.||++||+|+++.++....++ .+.||...+. .+
T Consensus 145 P~vIv~v~~~~-~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQ--PWPfP~SLMigf~ 221 (279)
T COG2816 145 PCVIVAVIRGD-EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQ--PWPFPHSLMLGFM 221 (279)
T ss_pred CeEEEEEecCC-ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEecc--CCCCchhhhhhhe
Confidence 35555555554 577777775 5699999999999999999999999999999998665433332 3466665443 33
Q ss_pred EEEecceee-----eeeeeEEecccccCC
Q 033022 88 NRLWGGEWH-----GQAQKWYASLLLLVP 111 (129)
Q Consensus 88 ~~~~~~~~~-----~~~~~W~~~~~~~~~ 111 (129)
..+-.+++. -.+.+||..+..-..
T Consensus 222 aey~sgeI~~d~~Eleda~WFs~~evl~~ 250 (279)
T COG2816 222 AEYDSGEITPDEGELEDARWFSRDEVLPA 250 (279)
T ss_pred eeeccccccCCcchhhhccccCHhHHhhh
Confidence 344444433 256799998873333
No 82
>PLN02791 Nudix hydrolase homolog
Probab=99.33 E-value=2.7e-12 Score=105.69 Aligned_cols=57 Identities=33% Similarity=0.651 Sum_probs=52.6
Q ss_pred CcCEEEEEEEeC-CCcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 8 YRPNVGVCLINS-DSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 8 ~~~~~~~~i~~~-~~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+|+++.++|++. ++++||+||+. +||.|++ ||||++.|||..+||+||++||+|+.+
T Consensus 31 ~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l 93 (770)
T PLN02791 31 YHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIIL 93 (770)
T ss_pred ceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 888999999996 58999999984 7899998 799999999999999999999999984
No 83
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.33 E-value=3.2e-12 Score=93.35 Aligned_cols=58 Identities=29% Similarity=0.338 Sum_probs=47.9
Q ss_pred CCcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eeecCCCCC-----------------HHHHHHHHHHHHhCCce
Q 033022 7 GYRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGGIEDGED-----------------PKLAAMRELREETGIVS 64 (129)
Q Consensus 7 ~~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~ve~gEs-----------------~~~aa~RE~~EEtGl~~ 64 (129)
-+|+++.++|+|.++++||+||+. +||.|+.. +|++..||+ ..+||+||++||||+..
T Consensus 54 l~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~ 133 (247)
T PLN02552 54 LLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPA 133 (247)
T ss_pred ceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCc
Confidence 388999999999999999999984 68999665 355555422 68999999999999984
No 84
>PLN03143 nudix hydrolase; Provisional
Probab=99.24 E-value=2.3e-11 Score=90.62 Aligned_cols=55 Identities=33% Similarity=0.528 Sum_probs=44.1
Q ss_pred CEEEEEEE-eCCCc--EEEEEEcCCC---CcEEcCeeecCC-CCCHHHHHHHHHHHHhCCce
Q 033022 10 PNVGVCLI-NSDSQ--IFVASRLNVP---GAWQMPQGGIED-GEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 10 ~~~~~~i~-~~~~~--vLl~~r~~~~---g~w~~PgG~ve~-gEs~~~aa~RE~~EEtGl~~ 64 (129)
.+|+++++ +.+++ ++|+++.+.+ -.|++|+|.+|+ +|++.+||+||++||||+.+
T Consensus 129 ~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~ 190 (291)
T PLN03143 129 PAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKL 190 (291)
T ss_pred CeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCcc
Confidence 35666554 54455 8999998744 368999999998 48999999999999999974
No 85
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.10 E-value=1.2e-09 Score=70.44 Aligned_cols=93 Identities=17% Similarity=0.280 Sum_probs=58.8
Q ss_pred EEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeEE
Q 033022 12 VGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVN 88 (129)
Q Consensus 12 ~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (129)
+.++++..++++||.||.. ++|.|+||+|.++.+|+.+++..|++.+|.++. .... ..+.|.|++.... +.
T Consensus 5 ~~~~ii~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~H~fth~~~~-~~ 78 (118)
T cd03431 5 IAVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLS-LEPL----GTVKHTFTHFRLT-LH 78 (118)
T ss_pred EEEEEEecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCcc-cccc----eeEEEecCCeEEE-EE
Confidence 3444445568999999975 569999999999999999999999999997641 1111 1234555544322 22
Q ss_pred EEecce----eeeeeeeEEecccccC
Q 033022 89 RLWGGE----WHGQAQKWYASLLLLV 110 (129)
Q Consensus 89 ~~~~~~----~~~~~~~W~~~~~~~~ 110 (129)
.+.... ....+..|++.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~W~~~eel~~ 104 (118)
T cd03431 79 VYLARLEGDLLAPDEGRWVPLEELDE 104 (118)
T ss_pred EEEEEEeCCCcCccccEEccHHHHhh
Confidence 121111 1245668888765543
No 86
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.05 E-value=3e-09 Score=74.41 Aligned_cols=59 Identities=37% Similarity=0.594 Sum_probs=45.8
Q ss_pred CEEEEE-EEeCCC--cEEEEEEcCCC-Cc--EEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEe
Q 033022 10 PNVGVC-LINSDS--QIFVASRLNVP-GA--WQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIA 69 (129)
Q Consensus 10 ~~~~~~-i~~~~~--~vLl~~r~~~~-g~--w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~ 69 (129)
.+|+++ ++..+| .++|+++.+.| |. .++|+|-++.||++++||+||++||||+. ..+..
T Consensus 74 dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~-gkv~~ 138 (225)
T KOG3041|consen 74 DGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYK-GKVDM 138 (225)
T ss_pred CeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCcc-ceeee
Confidence 356664 444455 57888887755 54 58899999999999999999999999999 54443
No 87
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.99 E-value=3.1e-09 Score=76.16 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=43.8
Q ss_pred EEEEEEEeC-C--CcEEEEEEcC----CCCcEEcCeeecCCC-CCHHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINS-D--SQIFVASRLN----VPGAWQMPQGGIEDG-EDPKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~-~--~~vLl~~r~~----~~g~w~~PgG~ve~g-Es~~~aa~RE~~EEtGl~~ 64 (129)
+|.+++++. + -++||.||+. ++|.-+||||+.++. +|..++|.||++||.|++.
T Consensus 45 aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~ 106 (246)
T KOG3069|consen 45 AVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDP 106 (246)
T ss_pred cEEEEEEEcCCCceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCH
Confidence 444455555 2 3789999984 679999999999985 6778899999999999995
No 88
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.93 E-value=1.5e-09 Score=74.63 Aligned_cols=58 Identities=28% Similarity=0.328 Sum_probs=53.0
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEc-CeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQM-PQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~-PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
.|++.++.|+|.+|++||.||+. +||.|.- ..||--+|||..+|++|-+.+|+|+.+.
T Consensus 32 LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~ 94 (185)
T COG1443 32 LHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPD 94 (185)
T ss_pred HHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCc
Confidence 68999999999999999999983 7899965 6699999999999999999999999975
No 89
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.6e-09 Score=80.27 Aligned_cols=57 Identities=37% Similarity=0.725 Sum_probs=50.7
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.+.++++.++|.+++||+++..+ ..|.|-+|+|.|+++|++.++|+||++||||++.
T Consensus 114 h~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ 174 (295)
T KOG0648|consen 114 HRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDT 174 (295)
T ss_pred hheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcch
Confidence 66788889999999999988643 3489999999999999999999999999999874
No 90
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.66 E-value=5.6e-08 Score=63.76 Aligned_cols=56 Identities=38% Similarity=0.634 Sum_probs=44.4
Q ss_pred cCEEEEEEEeCC-C--cEEEEEEcC------CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 9 RPNVGVCLINSD-S--QIFVASRLN------VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 9 ~~~~~~~i~~~~-~--~vLl~~r~~------~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+..+++++.... + .|||++--. ..|.|++|+|....||++..||+||.-||+|+.+
T Consensus 3 K~SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~v 67 (161)
T COG4119 3 KLSAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICV 67 (161)
T ss_pred cccceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceee
Confidence 356777776543 4 566665432 3389999999999999999999999999999986
No 91
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.24 E-value=6.4e-06 Score=53.17 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=48.1
Q ss_pred EEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCeeEeEEEE
Q 033022 14 VCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAVKTKVNRL 90 (129)
Q Consensus 14 ~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (129)
+++++.++++||.||.. ++|.|+||.--++. ++..+.+.+.+.+..|+.+... . ....+.|.|.+.... +. .
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~-~-~~~~v~H~fSH~~~~-~~-~ 76 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSV-E-PLGTVKHVFSHRRWT-IH-V 76 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE--S--SEEEEEE-SSEEEE-EE-E
T ss_pred EEEEEeCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhh-e-ecCcEEEEccceEEE-EE-E
Confidence 57788899999999996 45999999988774 4345556666667778764221 1 222445666654332 11 1
Q ss_pred ecceee------eeeeeEEeccccc
Q 033022 91 WGGEWH------GQAQKWYASLLLL 109 (129)
Q Consensus 91 ~~~~~~------~~~~~W~~~~~~~ 109 (129)
+..... .....|++.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~W~~~~~l~ 101 (114)
T PF14815_consen 77 YEVEVSADPPAEPEEGQWVSLEELD 101 (114)
T ss_dssp EEEEEE-SS----TTEEEEEGGGGG
T ss_pred EEEEecCCCCCCCCCcEEEEHHHHh
Confidence 111111 4567888877654
No 92
>PLN02839 nudix hydrolase
Probab=98.19 E-value=2.5e-06 Score=65.37 Aligned_cols=44 Identities=25% Similarity=0.433 Sum_probs=38.9
Q ss_pred CcEEEEEEcC----CCCcE-EcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 21 SQIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 21 ~~vLl~~r~~----~~g~w-~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.++.+.||+. +||.| .+.+|++..||++.++++||+.||.|+..
T Consensus 218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~ 266 (372)
T PLN02839 218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISK 266 (372)
T ss_pred eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCH
Confidence 5788888884 78999 55789999999999999999999999973
No 93
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=98.13 E-value=2.5e-06 Score=60.96 Aligned_cols=38 Identities=29% Similarity=0.594 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHh
Q 033022 22 QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREET 60 (129)
Q Consensus 22 ~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEt 60 (129)
+++.++|.+ .|.|.+|||-+++||.+..+++||+.||.
T Consensus 140 e~vavkr~d-~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPD-NGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCC-CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 566678775 68999999999999999999999999996
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.70 E-value=6e-06 Score=62.07 Aligned_cols=54 Identities=26% Similarity=0.502 Sum_probs=45.0
Q ss_pred EEEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
..++.++|.. .++||++... ...|.+|.|++...|+-.+||+||+.||||.+..
T Consensus 84 v~ga~ild~~~sr~llv~g~q-a~sw~fprgK~~kdesd~~caiReV~eetgfD~s 138 (348)
T KOG2937|consen 84 VRGAIILDEKRSRCLLVKGWQ-ASSWSFPRGKISKDESDSDCAIREVTEETGFDYS 138 (348)
T ss_pred CchHhhhhhhhhhhheeecee-cccccccCccccccchhhhcchhcccchhhcCHH
Confidence 4455677765 5888888775 3459999999999999999999999999999963
No 95
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=97.51 E-value=0.0006 Score=47.95 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=39.2
Q ss_pred CCcCEEEEEEE-eCCC--cEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022 7 GYRPNVGVCLI-NSDS--QIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63 (129)
Q Consensus 7 ~~~~~~~~~i~-~~~~--~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~ 63 (129)
|.|+.|.+|++ ...+ .|||.|... ..|.+|||.+.+||+..++++|.+.+-.|..
T Consensus 41 GmRrsVe~Vllvh~h~~PHvLLLq~~~--~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~ 98 (188)
T PF13869_consen 41 GMRRSVEGVLLVHEHGHPHVLLLQIGN--TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPE 98 (188)
T ss_dssp SSEEEEEEEEEEEETTEEEEEEEEETT--TEEE-SEEE--TT--HHHHHHHHHHHHHB-S
T ss_pred CCceEEEEEEEEecCCCcEEEEEeccC--ccccCCccEeCCCCChhHHHHHHHHHHcCCC
Confidence 56777776554 4433 689988654 5899999999999999999999999999986
No 96
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.75 E-value=0.00066 Score=48.07 Aligned_cols=58 Identities=28% Similarity=0.465 Sum_probs=45.0
Q ss_pred CcCEEEEEEEeCCCcEEEEEEcC----CCCcEEcC-eee-------cCC--CCCHHHHHHHHHHHHhCCcee
Q 033022 8 YRPNVGVCLINSDSQIFVASRLN----VPGAWQMP-QGG-------IED--GEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 8 ~~~~~~~~i~~~~~~vLl~~r~~----~~g~w~~P-gG~-------ve~--gEs~~~aa~RE~~EEtGl~~~ 65 (129)
.|++.++++++.++++||++|+. +|+.|+-- .++ .+. +.....||+|-++-|+|+...
T Consensus 51 LHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e 122 (225)
T KOG0142|consen 51 LHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLE 122 (225)
T ss_pred hhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCcc
Confidence 68899999999999999999985 67888431 122 221 236789999999999999853
No 97
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=96.50 E-value=0.007 Score=41.91 Aligned_cols=57 Identities=26% Similarity=0.369 Sum_probs=43.7
Q ss_pred CCCCcCEEEEEEE-eCC--CcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022 5 PSGYRPNVGVCLI-NSD--SQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63 (129)
Q Consensus 5 ~~~~~~~~~~~i~-~~~--~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~ 63 (129)
..|.|+.|-.+++ .+. ..|||.+-.. -.+-+|||.+++||+-.+.+.|-+-|-+|-.
T Consensus 65 k~gmRrsvegvlivheH~lPHvLLLQig~--tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr~ 124 (221)
T KOG1689|consen 65 KEGMRRSVEGVLIVHEHNLPHVLLLQIGN--TFFKLPGGRLRPGEDEADGLKRLLTESLGRS 124 (221)
T ss_pred hhhhhheeeeeEEEeecCCCeEEEEeeCC--EEEecCCCccCCCcchhHHHHHHHHHHhccc
Confidence 3566777766544 333 4788877542 4789999999999999999999999999943
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=95.75 E-value=0.017 Score=43.46 Aligned_cols=54 Identities=26% Similarity=0.436 Sum_probs=43.1
Q ss_pred EEEEEEEeCC-CcEEEEEEcC--------CC-------------------C-cEEcCeeecCCCCCHHHHHHHHHHHHhC
Q 033022 11 NVGVCLINSD-SQIFVASRLN--------VP-------------------G-AWQMPQGGIEDGEDPKLAAMRELREETG 61 (129)
Q Consensus 11 ~~~~~i~~~~-~~vLl~~r~~--------~~-------------------g-~w~~PgG~ve~gEs~~~aa~RE~~EEtG 61 (129)
.|++++++.+ .++|++|+-+ .+ | ..++.+|-|+..-|+.+-|..|+.||.|
T Consensus 28 ~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~eev~eecg 107 (405)
T KOG4432|consen 28 SVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEEVAEECG 107 (405)
T ss_pred ceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHHHHHHhC
Confidence 6777888776 5788877652 01 1 3578899999999999999999999999
Q ss_pred Cce
Q 033022 62 IVS 64 (129)
Q Consensus 62 l~~ 64 (129)
+.+
T Consensus 108 y~v 110 (405)
T KOG4432|consen 108 YRV 110 (405)
T ss_pred CcC
Confidence 996
No 99
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=95.27 E-value=0.059 Score=37.20 Aligned_cols=53 Identities=21% Similarity=0.378 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCcEEEEEEcCCC------CcEEc-CeeecCCCC---CHHHH----HHHHHHHHhCCce
Q 033022 11 NVGVCLINSDSQIFVASRLNVP------GAWQM-PQGGIEDGE---DPKLA----AMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~~------g~w~~-PgG~ve~gE---s~~~a----a~RE~~EEtGl~~ 64 (129)
.-.++|.+.+ +||+..|...+ |.+++ .|||+..++ |..+. +.||+.||+++.-
T Consensus 63 IpYvvi~~ed-evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vse 129 (203)
T COG4112 63 IPYVVIMDED-EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSE 129 (203)
T ss_pred ccEEEEecCC-EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCH
Confidence 3344555555 99999988422 46666 578887654 33332 7899999999983
No 100
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.023 Score=41.67 Aligned_cols=43 Identities=37% Similarity=0.496 Sum_probs=38.2
Q ss_pred cEEEEEEcC----CCCcE-EcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 22 QIFVASRLN----VPGAW-QMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 22 ~vLl~~r~~----~~g~w-~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
++.+.||++ |||.| .+.+|++.-|-...++|+.|..||+.+..
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~ 196 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPS 196 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCch
Confidence 678888885 77888 56899999999999999999999999985
No 101
>PRK10880 adenine DNA glycosylase; Provisional
Probab=94.27 E-value=0.19 Score=38.88 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=30.0
Q ss_pred EEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCc
Q 033022 11 NVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIEDGEDPKLAAMRELREETGIV 63 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~ 63 (129)
...++++..++++||.+|.. ++|.|+||.. +.. + ..++..|+.|+.
T Consensus 232 ~~~~~~~~~~~~~~l~~r~~~gl~~gl~~fP~~--~~~----~-~~~~~~~~~~~~ 280 (350)
T PRK10880 232 TGYFLLLQHGDEVWLEQRPPSGLWGGLFCFPQF--ADE----E-ELRQWLAQRGIA 280 (350)
T ss_pred EEEEEEEEECCEEEEEECCccChhhccccCCCC--cch----h-hHHHHHHhcCCc
Confidence 34444555667999999975 4599999963 221 1 245566778875
No 102
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=92.48 E-value=0.27 Score=36.22 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=35.8
Q ss_pred EEEEEEc-CCCCcEEcCeeec-CCCCCHHHHHHHHHHHHhCCce
Q 033022 23 IFVASRL-NVPGAWQMPQGGI-EDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 23 vLl~~r~-~~~g~w~~PgG~v-e~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+||++|. +..+.|.||-+.. ++++++..+|.|++++-.|=..
T Consensus 141 yLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~ 184 (263)
T KOG4548|consen 141 YLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENK 184 (263)
T ss_pred EEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchh
Confidence 6777755 3447999999999 9999999999999999998764
No 103
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=91.60 E-value=0.46 Score=35.57 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEEeCCCcEEEEEEcC---CCCcEEcCee
Q 033022 13 GVCLINSDSQIFVASRLN---VPGAWQMPQG 40 (129)
Q Consensus 13 ~~~i~~~~~~vLl~~r~~---~~g~w~~PgG 40 (129)
.+++.+.++++|+.+|.. ..|.|+||+.
T Consensus 231 ~~~~~~~~~~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 231 FLVLQNYDGEVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred EEEEEeCCCeEEEEeCCCCchhhccccCCCC
Confidence 334446678999999975 4589999973
No 104
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=89.81 E-value=0.83 Score=34.69 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=28.0
Q ss_pred cEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 34 AWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 34 ~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
..++..|.|+..-|..+-|.||..||.|++.
T Consensus 285 TlELcag~Vd~p~s~~e~a~~e~veecGYdl 315 (405)
T KOG4432|consen 285 TLELCAGRVDDPFSDPEKAARESVEECGYDL 315 (405)
T ss_pred eeeeecccCCCCcccHHHHHHHHHHHhCCCC
Confidence 4577889999889999999999999999995
No 105
>PF14443 DBC1: DBC1
Probab=89.05 E-value=0.65 Score=30.69 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=30.5
Q ss_pred cEEEEEEcC----CCCcEEcC--eeecCC-CCCHHHHHHHHHHHHhCCce
Q 033022 22 QIFVASRLN----VPGAWQMP--QGGIED-GEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 22 ~vLl~~r~~----~~g~w~~P--gG~ve~-gEs~~~aa~RE~~EEtGl~~ 64 (129)
++|+.++.+ -+|.|+.- ||-.+. ..++..+|+|=+++-||++.
T Consensus 9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDL 58 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDL 58 (126)
T ss_pred eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccch
Confidence 456655554 24788554 555554 36789999999999999994
No 106
>PRK13910 DNA glycosylase MutY; Provisional
Probab=86.17 E-value=1.1 Score=33.85 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=16.8
Q ss_pred CCCcEEEEEEcC--CCCcEEcCe
Q 033022 19 SDSQIFVASRLN--VPGAWQMPQ 39 (129)
Q Consensus 19 ~~~~vLl~~r~~--~~g~w~~Pg 39 (129)
.++++||.||.. ++|.|+||.
T Consensus 195 ~~~~~ll~kr~~~l~~gl~~fP~ 217 (289)
T PRK13910 195 QNNQIALEKIEQKLYLGMHHFPN 217 (289)
T ss_pred ECCEEEEEECCCchhcccccCCC
Confidence 456999998853 568999996
No 107
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=80.54 E-value=1.9 Score=22.59 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=12.1
Q ss_pred EcCeeecCCCCCHHHHHHHHHHHHh
Q 033022 36 QMPQGGIEDGEDPKLAAMRELREET 60 (129)
Q Consensus 36 ~~PgG~ve~gEs~~~aa~RE~~EEt 60 (129)
.+-||-..||--+...+.||+-||+
T Consensus 12 tClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 12 TCLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp -----------S-HHHHHHHHHHHH
T ss_pred HHhcccCCCCCCCchHHHHHHHHHH
Confidence 4457888899999999999999996
No 108
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=77.28 E-value=2.6 Score=32.58 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=28.8
Q ss_pred cCEEEEEEEeCCCcEEEEEEcC---CCCcEEcCeeecCC
Q 033022 9 RPNVGVCLINSDSQIFVASRLN---VPGAWQMPQGGIED 44 (129)
Q Consensus 9 ~~~~~~~i~~~~~~vLl~~r~~---~~g~w~~PgG~ve~ 44 (129)
+..++.++.+.+++++|.+|.. ..|.|++|....+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 235 RRFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred hheeeEEEEccCcchhhhhCcccCceecccccccccccc
Confidence 5567778889999999999986 34899999976544
No 109
>PF12860 PAS_7: PAS fold
Probab=74.79 E-value=1.6 Score=27.50 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.1
Q ss_pred EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHH
Q 033022 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMR 54 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~R 54 (129)
..+++++|.++++.+..+.. ...|.+|...+.+|-+..+.+.+
T Consensus 5 ~~Gv~v~D~~~rl~~~N~~~-~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 5 PQGVAVFDSDGRLVFWNQRF-RELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred CceEEEEcCCCeEEeEcHHH-HHHhCCCHHHhcCCCCHHHHHHH
Confidence 35789999999999888764 45789999999888887776544
No 110
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=74.11 E-value=6.8 Score=22.32 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=15.7
Q ss_pred CcEEcCeeecCCCCCHHHHHHHHH
Q 033022 33 GAWQMPQGGIEDGEDPKLAAMREL 56 (129)
Q Consensus 33 g~w~~PgG~ve~gEs~~~aa~RE~ 56 (129)
..|-+|||.+-.+-.-.+-+..|+
T Consensus 22 ~GWl~Pgg~vi~NPlkAqR~AE~~ 45 (60)
T PF07026_consen 22 NGWLMPGGKVITNPLKAQRLAEEL 45 (60)
T ss_pred ceeecCCCeeEcCHHHHHHHHHHH
Confidence 459999999887654444444333
No 111
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=70.24 E-value=1.5 Score=33.64 Aligned_cols=41 Identities=34% Similarity=0.591 Sum_probs=34.3
Q ss_pred EEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 24 FVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 24 Ll~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
..+-+..-+-.|.+|.|+++.||-+.++++|+-.||+|...
T Consensus 255 ~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~ 295 (348)
T KOG2937|consen 255 TAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPF 295 (348)
T ss_pred eecccccccccccCcccccccCCccccchhhhcCCCcCCcc
Confidence 33333334568999999999999999999999999999985
No 112
>PF14044 NETI: NETI protein
Probab=58.59 E-value=9 Score=21.71 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=18.7
Q ss_pred ecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 41 GIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 41 ~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
.|+.+||+.+|+.| ..+-|+.+.
T Consensus 3 eV~enETI~~CL~R--M~~eGY~Pv 25 (57)
T PF14044_consen 3 EVEENETISDCLAR--MKKEGYMPV 25 (57)
T ss_pred eccCCCcHHHHHHH--HHHcCCCce
Confidence 47889999999999 556698864
No 113
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=53.29 E-value=8.5 Score=29.82 Aligned_cols=26 Identities=38% Similarity=0.363 Sum_probs=22.0
Q ss_pred eeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 39 QGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 39 gG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
+=.|++.+-..+.+.||++||+++-+
T Consensus 406 KL~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 406 KLGVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred hhCCChhhcccHHHHHHHHHhcCcce
Confidence 34578888889999999999999874
No 114
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=52.18 E-value=29 Score=26.57 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=33.5
Q ss_pred EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCcee
Q 033022 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSA 65 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~ 65 (129)
+..++|+++++++|-.--....++|..+.-.+ -+-.+.++||++|+.|++..
T Consensus 14 ~s~~Vivd~~~~~~~~a~~~~Tnh~~ig~~~~---~~rie~~i~~A~~k~g~d~~ 65 (336)
T KOG1794|consen 14 CSRLVIVDEDGTILGRAVGGGTNHWLIGSTTC---ASRIEDMIREAKEKAGWDKK 65 (336)
T ss_pred eeEEEEECCCCCEeeEeeccccccccCCchHH---HHHHHHHHHHHHhhcCCCcc
Confidence 34457778887777644444447887772111 12345589999999999963
No 115
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=48.78 E-value=78 Score=21.43 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=26.9
Q ss_pred eCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceee
Q 033022 18 NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAE 66 (129)
Q Consensus 18 ~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~ 66 (129)
|..+.+|.-.-..+.|.+.+-+=+-+.-.-..+++..|++|.+|.....
T Consensus 24 D~E~sflFYnp~~WTGNfRISayk~~~~~ygk~~i~~EL~en~~a~~vk 72 (153)
T PF12712_consen 24 DGEGSFLFYNPDQWTGNFRISAYKGGSAQYGKECIRQELKENPSAKLVK 72 (153)
T ss_dssp --TTEEEEE-SSS---EEEEEEEE--STTHHHHHHHHHHHH-TT-EEEE
T ss_pred cCCcceEEEChHHhcCceEEEEEecccccchHHHHHHHHHhCCCcceEE
Confidence 3345677766555666666665443333457889999999999977543
No 116
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=47.94 E-value=7.4 Score=29.51 Aligned_cols=30 Identities=17% Similarity=0.036 Sum_probs=28.3
Q ss_pred cEEcCeeecCCCCCHHHHHHHHHHHHhCCce
Q 033022 34 AWQMPQGGIEDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 34 ~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.|.. .|+.+-++++.+++.|++.+++|+..
T Consensus 56 ~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf 85 (295)
T KOG0648|consen 56 KWYL-QGRKGIWLKLPEELARLVEEAAKYGF 85 (295)
T ss_pred HHHH-ccCcccceechHHHHhHHHHHHhcCc
Confidence 7988 99999999999999999999999884
No 117
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=44.85 E-value=64 Score=23.23 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHhCCceeeEEeecCceEEeecCCCe
Q 033022 45 GEDPKLAAMRELREETGIVSAEIIAEVPNWLTYDFPPAV 83 (129)
Q Consensus 45 gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 83 (129)
+|+..--+.||+.+|.|+.+...+.....-+.|.+|...
T Consensus 115 sEdAFR~gv~eil~e~g~~v~rw~~yDkeG~VYg~PS~V 153 (231)
T COG5493 115 SEDAFRQGVREILREVGYVVERWLYYDKEGHVYGHPSDV 153 (231)
T ss_pred cHHHHHHHHHHHHHHhchheeeEEEEcCCcceecCCcce
Confidence 466667789999999999887666554444566666554
No 118
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=42.82 E-value=25 Score=20.62 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=14.4
Q ss_pred cCeeecCCCCCHHHHHHH
Q 033022 37 MPQGGIEDGEDPKLAAMR 54 (129)
Q Consensus 37 ~PgG~ve~gEs~~~aa~R 54 (129)
+|...|..||+++.|+.|
T Consensus 1 M~~v~V~ene~~d~ALrr 18 (67)
T COG0828 1 MPQVKVRENEPLDKALRR 18 (67)
T ss_pred CCeeeecCCChHHHHHHH
Confidence 477889999999988654
No 119
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=42.05 E-value=90 Score=19.84 Aligned_cols=21 Identities=14% Similarity=0.076 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHhCCce
Q 033022 44 DGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 44 ~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.|+++.+.+.+|+.+-+|..+
T Consensus 82 ~g~~L~~~L~~~~~~~~g~~v 102 (105)
T PRK00446 82 SGEEFWALLEEAATQQAGEPV 102 (105)
T ss_pred CCcHHHHHHHHHHHHHcCCce
Confidence 589999999999999999873
No 120
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=39.12 E-value=98 Score=19.55 Aligned_cols=21 Identities=29% Similarity=0.280 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHhCCce
Q 033022 44 DGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 44 ~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.|+++.+.+.+|+..-+|..+
T Consensus 80 ~g~~l~~~L~~~~~~~~g~~v 100 (102)
T TIGR03421 80 DGEELWALLARACSEQAGEPV 100 (102)
T ss_pred CCcHHHHHHHHHHHHHhCCcc
Confidence 589999999999999999763
No 121
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=39.03 E-value=3.5 Score=18.33 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=8.2
Q ss_pred ccccccccccC
Q 033022 119 HFMKENQVVLS 129 (129)
Q Consensus 119 ~~~~~~~~~~~ 129 (129)
.||+.++|+||
T Consensus 6 kWmeLE~IiLs 16 (20)
T PF08333_consen 6 KWMELENIILS 16 (20)
T ss_pred HHHHHHHHHHH
Confidence 47778888776
No 122
>PRK07198 hypothetical protein; Validated
Probab=38.29 E-value=57 Score=26.01 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=31.3
Q ss_pred EeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE
Q 033022 17 INSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67 (129)
Q Consensus 17 ~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~ 67 (129)
++.++.+.+.|-.-.| -|.+||=.-..| ..+..++|-++|+||=--.++
T Consensus 158 ~~~~g~~~vtk~av~p-vwylpgva~rfg-~~e~~lrr~lfe~t~g~~pel 206 (418)
T PRK07198 158 LLANGDVVVTKAAIEP-VWYLPGVAERFG-VSETDLRRTLFEQTGGMFPEL 206 (418)
T ss_pred ecCCCcEEEEEeeecc-cccccchHHHcC-CCHHHHHHHHHHHcCCCCcee
Confidence 3455666666665434 799998432333 335678999999998653333
No 123
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=37.71 E-value=90 Score=19.80 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHHHHHHhCCce
Q 033022 44 DGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 44 ~gEs~~~aa~RE~~EEtGl~~ 64 (129)
.|+++.+.+.+|+..-+|..+
T Consensus 83 ~g~~L~~~L~~e~~~~~g~~v 103 (105)
T cd00503 83 SGEELWELLEEECSAQSGEDV 103 (105)
T ss_pred CCChHHHHHHHHHHHHhCCcc
Confidence 589999999999999998763
No 124
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=35.54 E-value=56 Score=20.81 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCce
Q 033022 43 EDGEDPKLAAMRELREETGIVS 64 (129)
Q Consensus 43 e~gEs~~~aa~RE~~EEtGl~~ 64 (129)
..|+++.+.+.||+.+-+|..+
T Consensus 85 r~g~~l~~~L~~el~~~~g~~v 106 (109)
T PF01491_consen 85 RDGEELFELLEEELSQQLGEPV 106 (109)
T ss_dssp TTTEBHHHHHHHHHHHHHTS--
T ss_pred CCCchHHHHHHHHHHHHhCCCe
Confidence 3689999999999999999874
No 125
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=31.88 E-value=1.4e+02 Score=24.48 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=34.8
Q ss_pred EEEEEEEeCCCcEEEEEEcCCCCcEEcCe-eecCCC-CCHHH---HHHHHHHHHhCCceeeE
Q 033022 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQ-GGIEDG-EDPKL---AAMRELREETGIVSAEI 67 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~Pg-G~ve~g-Es~~~---aa~RE~~EEtGl~~~~~ 67 (129)
...++++|.+++++-.....+..+ +|. |.||.+ +.+.+ .+++++.++.|+...++
T Consensus 16 ssRaivfd~~g~iva~~q~e~~Q~--yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~i 75 (499)
T COG0554 16 SSRAIVFDEDGNIVAIAQREFTQI--YPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEI 75 (499)
T ss_pred ceeEEEECCCCCchhhhhhhhhhh--CCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccce
Confidence 456678888877765544433322 665 889875 33332 36778888999886443
No 126
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.81 E-value=43 Score=20.01 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCCce
Q 033022 51 AAMRELREETGIVS 64 (129)
Q Consensus 51 aa~RE~~EEtGl~~ 64 (129)
+++.|.-||+|++.
T Consensus 58 ~LikeAv~ELgLDF 71 (82)
T PF11212_consen 58 ALIKEAVEELGLDF 71 (82)
T ss_pred HHHHHHHHHhCCcH
Confidence 57899999999984
No 127
>PRK03298 hypothetical protein; Provisional
Probab=26.77 E-value=74 Score=23.22 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=26.1
Q ss_pred CEEEEEEEeCCCcEEEEEE--cCCCCcEEcCeeecCC
Q 033022 10 PNVGVCLINSDSQIFVASR--LNVPGAWQMPQGGIED 44 (129)
Q Consensus 10 ~~~~~~i~~~~~~vLl~~r--~~~~g~w~~PgG~ve~ 44 (129)
.+-.++++..||.+|+..- +..|=.|..|+-.++.
T Consensus 22 ~~~RLiiiK~DGsvlVH~d~~~~kPlNW~pp~~~~~~ 58 (224)
T PRK03298 22 SARRLLLVKADGSVSVHADDRAYKPLNWMSPPCTLTE 58 (224)
T ss_pred CCceEEEEccCCeEEEecCCCCCCCcccCCCCeEEEE
Confidence 4556788888888888665 3356689999988764
No 128
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=26.48 E-value=68 Score=22.35 Aligned_cols=15 Identities=40% Similarity=1.039 Sum_probs=12.6
Q ss_pred cEEcCeeecCCCCCH
Q 033022 34 AWQMPQGGIEDGEDP 48 (129)
Q Consensus 34 ~w~~PgG~ve~gEs~ 48 (129)
.|.+|-|.+|.|+.+
T Consensus 128 dWY~PEG~mEGg~Kl 142 (192)
T COG4353 128 DWYFPEGGMEGGPKL 142 (192)
T ss_pred eeeccCccccccccc
Confidence 699999999988743
No 129
>PF13014 KH_3: KH domain
Probab=25.59 E-value=56 Score=16.66 Aligned_cols=13 Identities=46% Similarity=0.741 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCce
Q 033022 52 AMRELREETGIVS 64 (129)
Q Consensus 52 a~RE~~EEtGl~~ 64 (129)
-++++.+|+|..+
T Consensus 12 ~I~~I~~~tg~~I 24 (43)
T PF13014_consen 12 TIKEIREETGAKI 24 (43)
T ss_pred HHHHHHHHhCcEE
Confidence 4899999999984
No 130
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function.
Probab=25.37 E-value=65 Score=23.00 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=18.6
Q ss_pred EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHH
Q 033022 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKL 50 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~ 50 (129)
+.+++|+. +|+++|.| |.|..| .+..+|+....
T Consensus 94 a~svlV~~-~g~~llrr-----G~~~~~-~~~~~g~i~~~ 126 (195)
T PF11152_consen 94 ARSVLVYY-DGRVLLRR-----GILGSP-SKFKPGPICQR 126 (195)
T ss_pred ceEEEEEE-CCEEEEEe-----eccCCC-CCcchHHHHHH
Confidence 44555555 56888865 566555 44555554443
No 131
>PRK00270 rpsU 30S ribosomal protein S21; Reviewed
Probab=25.28 E-value=79 Score=18.23 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=15.8
Q ss_pred CeeecCCCCCHHHHHHH--HHHHHhCCc
Q 033022 38 PQGGIEDGEDPKLAAMR--ELREETGIV 63 (129)
Q Consensus 38 PgG~ve~gEs~~~aa~R--E~~EEtGl~ 63 (129)
|.-.|..||+++.|+.| -..+..|+-
T Consensus 2 ~~V~V~~~e~ie~Alrrfkr~~~k~gil 29 (64)
T PRK00270 2 PQVKVRENESIDKALRRFKRKVEKAGIL 29 (64)
T ss_pred CeeEeCCCChHHHHHHHHHHHHHHcchH
Confidence 45567889988887543 223444543
No 132
>PF03621 MbtH: MbtH-like protein; InterPro: IPR005153 This domain is found in the MbtH protein O05821 from SWISSPROT as well as at the N terminus of the antibiotic synthesis protein NIKP1. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. Many of the members of this family are found in known antibiotic synthesis gene clusters.; PDB: 2PST_X 2GPF_A 2LPD_A 2KHR_A.
Probab=23.54 E-value=59 Score=18.14 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=9.3
Q ss_pred CCcEEcCeeecCC-CCCHHHHHH
Q 033022 32 PGAWQMPQGGIED-GEDPKLAAM 53 (129)
Q Consensus 32 ~g~w~~PgG~ve~-gEs~~~aa~ 53 (129)
|....+|.|.-.. |....+++.
T Consensus 27 P~~~~vP~GW~~~~G~~sr~~Cl 49 (54)
T PF03621_consen 27 PAFRPVPAGWRAVFGPGSRQECL 49 (54)
T ss_dssp ETTS---TTEEEEEEEE-HHHHH
T ss_pred cCCCCCCCCcceeeCCcCHHHHH
Confidence 3445777776554 544444443
No 133
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=22.80 E-value=1.7e+02 Score=22.23 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=29.8
Q ss_pred EEEEEEEeCCCcEEEEEEcCCCCcEEcCeeecCCCCC------HHHHHHHHHHHHhCCce
Q 033022 11 NVGVCLINSDSQIFVASRLNVPGAWQMPQGGIEDGED------PKLAAMRELREETGIVS 64 (129)
Q Consensus 11 ~~~~~i~~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs------~~~aa~RE~~EEtGl~~ 64 (129)
.+++.+++.+++++-..+... .-+.|++-|.+. ..-.+++++.+++|++.
T Consensus 9 ~~s~al~~~~~~i~~~~~~~~----~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~ 64 (322)
T TIGR03722 9 TFGVGIVDEDGEILANVSDTY----VPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSL 64 (322)
T ss_pred ceEEEEEECCCeEEEEEEeec----ccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 455666665667776555432 233455555432 22245899999999974
No 134
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=22.78 E-value=80 Score=18.78 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=24.4
Q ss_pred EEcCeeecCCCCCHHHHHHHHHHHHhCCceeeE
Q 033022 35 WQMPQGGIEDGEDPKLAAMRELREETGIVSAEI 67 (129)
Q Consensus 35 w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~ 67 (129)
+++--.++-.+|...+-|++|...|.|++..++
T Consensus 36 FQlLitRLmnneeIsEeaQ~EMA~eAgi~~~rI 68 (81)
T PF10820_consen 36 FQLLITRLMNNEEISEEAQQEMASEAGIDEQRI 68 (81)
T ss_pred HHHHHHHHhccHhhhHHHHHHHHHHcCCcHHHH
Confidence 334444556678888899999999999996433
No 135
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=21.42 E-value=1.1e+02 Score=25.31 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=36.9
Q ss_pred EEEEEEEeCC-CcEEEEEEcCCCCcEEcCeeecCCC-CC---HHHHHHHHHHHHhCCceeeEEe
Q 033022 11 NVGVCLINSD-SQIFVASRLNVPGAWQMPQGGIEDG-ED---PKLAAMRELREETGIVSAEIIA 69 (129)
Q Consensus 11 ~~~~~i~~~~-~~vLl~~r~~~~g~w~~PgG~ve~g-Es---~~~aa~RE~~EEtGl~~~~~~~ 69 (129)
.+.+.++|.. |++|=.-.... -.|.....+.+-. ++ ....++|.+.+|+|++..++.+
T Consensus 14 SaRA~v~D~~~G~~la~a~~p~-~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~~V~g 76 (544)
T COG1069 14 SARAGVFDCQTGTLLARAVRPY-PMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPADVVG 76 (544)
T ss_pred ceeEEEEEcCCCcchhhcccce-eccccCccccccCHHHHHHHHHHHHHHHHHHcCCChhHeeE
Confidence 4567778776 66554333222 3677777777433 43 3445899999999999744443
No 136
>PRK01381 Trp operon repressor; Provisional
Probab=21.40 E-value=87 Score=19.84 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=12.0
Q ss_pred HHHHHHHHhCCcee
Q 033022 52 AMRELREETGIVSA 65 (129)
Q Consensus 52 a~RE~~EEtGl~~~ 65 (129)
-+||+.+++|+.+.
T Consensus 57 sQREIa~~lGvSia 70 (99)
T PRK01381 57 SQREIKQELGVGIA 70 (99)
T ss_pred CHHHHHHHhCCcee
Confidence 48999999999853
No 137
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=21.04 E-value=70 Score=20.25 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=11.5
Q ss_pred cCeee-cCCCCCHHHHHHHHH
Q 033022 37 MPQGG-IEDGEDPKLAAMREL 56 (129)
Q Consensus 37 ~PgG~-ve~gEs~~~aa~RE~ 56 (129)
-|+|+ ++++-..++.+.||+
T Consensus 49 s~~Gklvds~pe~e~eLk~el 69 (105)
T KOG4634|consen 49 SPAGKLVDSDPEYEQELKEEL 69 (105)
T ss_pred CCCCCCCCCCHHHHHHHHHHH
Confidence 46666 666655555555544
No 138
>KOG3904 consensus Predicted hydrolase RP2 (NUDIX/MutT superfamily) [Function unknown]
Probab=20.68 E-value=56 Score=23.50 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHhCCce
Q 033022 46 EDPKLAAMRELREETGIVS 64 (129)
Q Consensus 46 Es~~~aa~RE~~EEtGl~~ 64 (129)
-.....|+||..||.|+-.
T Consensus 23 i~lrltAire~feE~gill 41 (209)
T KOG3904|consen 23 IALRLTAIRETFEEVGILL 41 (209)
T ss_pred eeeccHHHHHHHhhhheeE
Confidence 5667789999999999873
No 139
>PF13680 DUF4152: Protein of unknown function (DUF4152)
Probab=20.38 E-value=1.1e+02 Score=21.72 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhCCcee
Q 033022 49 KLAAMRELREETGIVSA 65 (129)
Q Consensus 49 ~~aa~RE~~EEtGl~~~ 65 (129)
.|-+.+-.+||||+.+.
T Consensus 116 lQPLAkkfWEetgiEIl 132 (227)
T PF13680_consen 116 LQPLAKKFWEETGIEIL 132 (227)
T ss_pred hHHHHHHHHHhhCcEEE
Confidence 34566778999999963
No 140
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=1.1e+02 Score=23.86 Aligned_cols=51 Identities=12% Similarity=-0.061 Sum_probs=31.2
Q ss_pred CcCEEEEEEE-eCCCcEEEEEEcCCCCcEEcCeeecCCCCCHHHHHHHHHHHHhC
Q 033022 8 YRPNVGVCLI-NSDSQIFVASRLNVPGAWQMPQGGIEDGEDPKLAAMRELREETG 61 (129)
Q Consensus 8 ~~~~~~~~i~-~~~~~vLl~~r~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtG 61 (129)
.++....+.+ |.-+.+-++.|.. +-.|.+|+|+.+..+=+.++ +|..|+-+
T Consensus 340 ~~~~~~lIyfTDG~gd~p~~~r~~-~~lwVl~~~~~e~e~f~~e~--v~~le~~~ 391 (396)
T COG3864 340 NRMECFLIYFTDGMGDQPLVFRPK-VLLWVLTGAKGEVEKFKNEV--VETLEPYK 391 (396)
T ss_pred hcccceEEEEccCCCCcccccCCc-ceEEEecCCccchhccchHH--HHHhccCc
Confidence 3443344444 4447788877765 57899999887765555554 34455544
Done!