BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033023
         (129 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HYP|A Chain A, Crystal Structure Of Hydrophobic Protein From Soybean; A
           Member Of A New Cystine-Rich Family
          Length = 80

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 7/75 (9%)

Query: 54  KLGACAGVLGTNVAVGSPPYSQCCAILGGLGEVEAALCLCLAIKANVLAIELNWPTNIGL 113
            L  C  +LG ++         CCA++GGLG++EA +CLC+ ++A  L I LN   N+ L
Sbjct: 10  DLSICLNILGGSLGT----VDDCCALIGGLGDIEAIVCLCIQLRA--LGI-LNLNRNLQL 62

Query: 114 ILSLCNRPIPAGFKC 128
           IL+ C R  P+   C
Sbjct: 63  ILNSCGRSYPSNATC 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,476,389
Number of Sequences: 62578
Number of extensions: 71403
Number of successful extensions: 133
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 1
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)