Query 033023
Match_columns 129
No_of_seqs 114 out of 326
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 08:51:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01958 HPS_like HPS_like: Hyd 100.0 8.5E-38 1.9E-42 219.6 1.0 83 46-128 2-85 (85)
2 PF14547 Hydrophob_seed: Hydro 100.0 8.9E-37 1.9E-41 214.3 5.4 83 47-129 1-85 (85)
3 PF14368 LTP_2: Probable lipid 96.8 0.00018 3.9E-09 48.9 -0.8 57 69-128 39-96 (96)
4 smart00499 AAI Plant lipid tra 96.8 0.00036 7.9E-09 44.6 0.5 74 49-128 2-79 (79)
5 cd04660 nsLTP_like nsLTP_like: 96.2 0.0012 2.5E-08 44.2 -0.0 65 53-128 6-73 (73)
6 cd01959 nsLTP2 nsLTP2: Non-spe 96.2 0.00076 1.6E-08 45.2 -1.0 62 53-124 4-65 (66)
7 cd00010 AAI_LTSS AAI_LTSS: Alp 93.0 0.036 7.7E-07 35.2 0.5 47 71-119 14-62 (63)
8 PF07172 GRP: Glycine rich pro 92.9 0.097 2.1E-06 37.4 2.7 22 1-22 1-23 (95)
9 PF00234 Tryp_alpha_amyl: Prot 92.1 0.036 7.8E-07 37.4 -0.4 66 53-128 13-90 (90)
10 cd01960 nsLTP1 nsLTP1: Non-spe 87.2 0.14 3E-06 35.0 -0.6 67 53-123 8-79 (89)
11 PF03058 Sar8_2: Sar8.2 family 31.5 46 0.001 24.0 2.4 13 1-16 1-13 (93)
12 PF02084 Bindin: Bindin; Inte 20.2 42 0.0009 28.0 0.5 26 90-116 103-135 (238)
No 1
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00 E-value=8.5e-38 Score=219.57 Aligned_cols=83 Identities=48% Similarity=1.094 Sum_probs=81.3
Q ss_pred CCCCcccccccccccccc-ceeeeCCCCCCCccchhcCCccchhhHHHHHHhhhcccceeccccchHHHHHhhcCCCCCC
Q 033023 46 AYCPTNTLKLGACAGVLG-TNVAVGSPPYSQCCAILGGLGEVEAALCLCLAIKANVLAIELNWPTNIGLILSLCNRPIPA 124 (129)
Q Consensus 46 ~~CP~d~lkL~vCa~vL~-~~~~~g~p~~~~CC~li~gL~d~~AA~CLC~aikanvLgi~~~~pv~l~~lln~CGk~~P~ 124 (129)
++||+|++|||+|+|||| +++.+|.|++++||++|+||+|+|||+|||||||+|+|||++|+|+++++++|+|||++|+
T Consensus 2 ~~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P~ 81 (85)
T cd01958 2 PTCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVPP 81 (85)
T ss_pred CCCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCCC
Confidence 689999999999999999 8888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 033023 125 GFKC 128 (129)
Q Consensus 125 gf~C 128 (129)
||+|
T Consensus 82 gf~C 85 (85)
T cd01958 82 GFTC 85 (85)
T ss_pred CCcC
Confidence 9998
No 2
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=100.00 E-value=8.9e-37 Score=214.25 Aligned_cols=83 Identities=49% Similarity=1.131 Sum_probs=81.4
Q ss_pred CCCcccccccccccccc-ceeeeCCCCCCCccchhcCCccchhhHHHHHHhhhcccc-eeccccchHHHHHhhcCCCCCC
Q 033023 47 YCPTNTLKLGACAGVLG-TNVAVGSPPYSQCCAILGGLGEVEAALCLCLAIKANVLA-IELNWPTNIGLILSLCNRPIPA 124 (129)
Q Consensus 47 ~CP~d~lkL~vCa~vL~-~~~~~g~p~~~~CC~li~gL~d~~AA~CLC~aikanvLg-i~~~~pv~l~~lln~CGk~~P~ 124 (129)
+||+|++||++|+|||| +++.+|.|++++||++|+||+|+|||+|||+|+|+|++| |++|+|++++++||.|||++|+
T Consensus 1 ~CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p~ 80 (85)
T PF14547_consen 1 TCPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVPS 80 (85)
T ss_pred CCCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCcC
Confidence 69999999999999999 999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred CCccC
Q 033023 125 GFKCA 129 (129)
Q Consensus 125 gf~C~ 129 (129)
||+|+
T Consensus 81 gf~C~ 85 (85)
T PF14547_consen 81 GFTCP 85 (85)
T ss_pred CCcCC
Confidence 99996
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=96.85 E-value=0.00018 Score=48.86 Aligned_cols=57 Identities=25% Similarity=0.585 Sum_probs=34.4
Q ss_pred CCCCCCCccchhcCCccchhhHHHHHHhhhcc-cceeccccchHHHHHhhcCCCCCCCCcc
Q 033023 69 GSPPYSQCCAILGGLGEVEAALCLCLAIKANV-LAIELNWPTNIGLILSLCNRPIPAGFKC 128 (129)
Q Consensus 69 g~p~~~~CC~li~gL~d~~AA~CLC~aikanv-Lgi~~~~pv~l~~lln~CGk~~P~gf~C 128 (129)
+..|.++||.-++.+.+. ...|||..++... .++++|..- ...|...||...|. ++|
T Consensus 39 ~~~Ps~~CC~~l~~~~~~-~~~ClC~~~~~~~~~~~~in~~~-a~~Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 39 GPAPSAACCSALKSVVQA-DPPCLCQLLNSPGAPGFGINVTR-ALALPAACGVPVPP-SKC 96 (96)
T ss_dssp -----HHHHHHHCC-----HCCHHHCCCC-CCHCHHCCTCHH-HHHHHHHCTSS-S-----
T ss_pred CCCCCHHHHHHHHHhccC-CCCCHHHhcCccccccCCcCHHH-HHHHHHHcCCCCCC-CCC
Confidence 445778999999999874 4899999999876 555667444 45678999999998 887
No 4
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=96.83 E-value=0.00036 Score=44.62 Aligned_cols=74 Identities=39% Similarity=0.716 Sum_probs=50.2
Q ss_pred CccccccccccccccceeeeCCCCCCCccchhcCCccchhhHHHHHHhhhccccee----ccccchHHHHHhhcCCCCCC
Q 033023 49 PTNTLKLGACAGVLGTNVAVGSPPYSQCCAILGGLGEVEAALCLCLAIKANVLAIE----LNWPTNIGLILSLCNRPIPA 124 (129)
Q Consensus 49 P~d~lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~~AA~CLC~aikanvLgi~----~~~pv~l~~lln~CGk~~P~ 124 (129)
.....++..|..++.... ...++.++||..++++. ...|+|.+++....++. ++ ......|.+.||...|.
T Consensus 2 ~~~~~~~~~c~~~~~~~~-~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~-~~~a~~lp~~C~~~~~~ 76 (79)
T smart00499 2 GQVLLQLAPCLSYLTGGS-PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVN-AQNAASLPSACGVPPPY 76 (79)
T ss_pred hhhhhhHHhhHHHHcCCC-CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhh-HHHHHhhHHhcCCCCCC
Confidence 334445556776653110 12346788999999998 66799999998876653 23 44567788999999875
Q ss_pred CCcc
Q 033023 125 GFKC 128 (129)
Q Consensus 125 gf~C 128 (129)
+.|
T Consensus 77 -~~C 79 (79)
T smart00499 77 -TDC 79 (79)
T ss_pred -CCC
Confidence 554
No 5
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=96.22 E-value=0.0012 Score=44.22 Aligned_cols=65 Identities=28% Similarity=0.556 Sum_probs=46.8
Q ss_pred cccccccccccceeeeCC---CCCCCccchhcCCccchhhHHHHHHhhhcccceeccccchHHHHHhhcCCCCCCCCcc
Q 033023 53 LKLGACAGVLGTNVAVGS---PPYSQCCAILGGLGEVEAALCLCLAIKANVLAIELNWPTNIGLILSLCNRPIPAGFKC 128 (129)
Q Consensus 53 lkL~vCa~vL~~~~~~g~---p~~~~CC~li~gL~d~~AA~CLC~aikanvLgi~~~~pv~l~~lln~CGk~~P~gf~C 128 (129)
.+|..|...+. -|. +|.+.||+-|+.+ |. .|+|..++...+.+ +|.. ....|-+.||..+|. ++|
T Consensus 6 ~~L~~C~~yl~----~~~~~~~Ps~~CC~~vk~~-~~---~C~C~~~~~~~~~~-i~~~-~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 6 DLLAECQPYVT----GPNPPPPPSRECCAALRRA-DL---PCLCRYKTSLVLQI-IDPD-KAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred HHHHHHHHHHc----CCCCCCCCCHHHHHHHHcC-Cc---CCEeeccCCCcccc-cCHH-HHHHHHHHcCCCCCC-CCC
Confidence 46677877752 122 3567899999985 22 39999998876553 5544 357788999999999 987
No 6
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=96.20 E-value=0.00076 Score=45.16 Aligned_cols=62 Identities=34% Similarity=0.637 Sum_probs=46.0
Q ss_pred cccccccccccceeeeCCCCCCCccchhcCCccchhhHHHHHHhhhcccceeccccchHHHHHhhcCCCCCC
Q 033023 53 LKLGACAGVLGTNVAVGSPPYSQCCAILGGLGEVEAALCLCLAIKANVLAIELNWPTNIGLILSLCNRPIPA 124 (129)
Q Consensus 53 lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~~AA~CLC~aikanvLgi~~~~pv~l~~lln~CGk~~P~ 124 (129)
.+|..|.... ..|.+|.++||..|+. +--|||.-+|...++.-||.+-+ .-|.+.||..+|.
T Consensus 4 ~~L~~C~~ai----~~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~~~i~~~~A-~~l~~~Cgv~~P~ 65 (66)
T cd01959 4 TQLSPCLPAI----LGGSPPSAACCAKLKE-----QQSCLCQYAKNPSLKQYVNSPNA-RKVLAACGVPYPN 65 (66)
T ss_pred hhcccCHHHH----hCCCCCCHHHHHHHhc-----CCCCeeeeecCccHHhhcCcHHH-HHHHHHcCCCCCC
Confidence 4678888763 2357888999999997 23799999987666644565554 4577899999864
No 7
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=93.01 E-value=0.036 Score=35.25 Aligned_cols=47 Identities=28% Similarity=0.548 Sum_probs=32.5
Q ss_pred CCCCCccchhcCCccchhhHHHHHHhhhcccce-ec-cccchHHHHHhhcC
Q 033023 71 PPYSQCCAILGGLGEVEAALCLCLAIKANVLAI-EL-NWPTNIGLILSLCN 119 (129)
Q Consensus 71 p~~~~CC~li~gL~d~~AA~CLC~aikanvLgi-~~-~~pv~l~~lln~CG 119 (129)
.+.++||.-++.+.+.| ..|||..+|....+. .+ | .-....|.+.||
T Consensus 14 ~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~-~~~a~~LP~~Cg 62 (63)
T cd00010 14 APPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKN-ATRALALPAACG 62 (63)
T ss_pred CCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCccc-HHHHHhchHhcC
Confidence 46788999999998764 469999999866432 12 2 233455667776
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=92.93 E-value=0.097 Score=37.39 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=13.2
Q ss_pred CCCch-hHHHHHHHHHHHHHHHh
Q 033023 1 MASNN-KLAAAIFVLSVLLSTTM 22 (129)
Q Consensus 1 MAsk~-~~~al~l~lnll~f~~~ 22 (129)
||||+ ..++|||++.||+++-+
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 99996 34455555555555533
No 9
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=92.11 E-value=0.036 Score=37.39 Aligned_cols=66 Identities=30% Similarity=0.564 Sum_probs=47.4
Q ss_pred cccccccccccceeeeC-CCCCCCccchhcCCccchhhHHHHHHhhhcccce-----------eccccchHHHHHhhcCC
Q 033023 53 LKLGACAGVLGTNVAVG-SPPYSQCCAILGGLGEVEAALCLCLAIKANVLAI-----------ELNWPTNIGLILSLCNR 120 (129)
Q Consensus 53 lkL~vCa~vL~~~~~~g-~p~~~~CC~li~gL~d~~AA~CLC~aikanvLgi-----------~~~~pv~l~~lln~CGk 120 (129)
..+..|...+. -+ ..+.++||.-|+.| -..|.|.+||..+.++ .++.. ....|.+.||.
T Consensus 13 ~~l~~c~~~~~----~~~~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~-~a~~LP~~C~v 83 (90)
T PF00234_consen 13 VRLSPCLPYLQ----GGCQQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQ-RAQNLPSMCNV 83 (90)
T ss_dssp SHHHGGHHHHT----TSSSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHH-HHHHHHHHTTS
T ss_pred ccccccHHHHh----cccccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHCCC
Confidence 45667776652 11 13567899999999 7899999999988773 34433 45778899999
Q ss_pred CCCCCCcc
Q 033023 121 PIPAGFKC 128 (129)
Q Consensus 121 ~~P~gf~C 128 (129)
.+|. |.|
T Consensus 84 ~~~~-~~C 90 (90)
T PF00234_consen 84 SPPY-TDC 90 (90)
T ss_dssp SSSS-S-G
T ss_pred CCCC-CCC
Confidence 9887 665
No 10
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=87.22 E-value=0.14 Score=35.02 Aligned_cols=67 Identities=25% Similarity=0.438 Sum_probs=43.2
Q ss_pred cccccccccccceeeeCCCCCCCccchhcCCccc----hhhHHHHHHhhhccccee-ccccchHHHHHhhcCCCCC
Q 033023 53 LKLGACAGVLGTNVAVGSPPYSQCCAILGGLGEV----EAALCLCLAIKANVLAIE-LNWPTNIGLILSLCNRPIP 123 (129)
Q Consensus 53 lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~----~AA~CLC~aikanvLgi~-~~~pv~l~~lln~CGk~~P 123 (129)
.+|.-|..++.- -+..|.++||.-++.|.+. +.-.|+|.-+|....++. +|.. .+..|-..||-..|
T Consensus 8 ~~l~~C~~y~~g---~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~-~a~~LP~~C~v~~~ 79 (89)
T cd01960 8 SLLAPCLGYLTG---GGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPG-RAAGLPGKCGVSIP 79 (89)
T ss_pred hhHHhHHHHHhC---CCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHH-HHHhChHhcccCCC
Confidence 467778887631 1134667899999998754 223566766777666553 5533 34567788988754
No 11
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=31.53 E-value=46 Score=24.02 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=9.6
Q ss_pred CCCchhHHHHHHHHHH
Q 033023 1 MASNNKLAAAIFVLSV 16 (129)
Q Consensus 1 MAsk~~~~al~l~lnl 16 (129)
|++|+ -+||-|+|
T Consensus 1 M~~Kt---nlfl~lSL 13 (93)
T PF03058_consen 1 MVSKT---NLFLCLSL 13 (93)
T ss_pred Ccchh---hhHHHHHH
Confidence 89985 46677777
No 12
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=20.18 E-value=42 Score=27.96 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=16.0
Q ss_pred HHHHHHhhhcccce-eccccc------hHHHHHh
Q 033023 90 LCLCLAIKANVLAI-ELNWPT------NIGLILS 116 (129)
Q Consensus 90 ~CLC~aikanvLgi-~~~~pv------~l~~lln 116 (129)
+=+-..||| |||- .||+|| +|.|||+
T Consensus 103 AKvm~~ika-vLgaTKiDLPVDINDPYDlGLLLR 135 (238)
T PF02084_consen 103 AKVMEDIKA-VLGATKIDLPVDINDPYDLGLLLR 135 (238)
T ss_pred HHHHHHHHH-HhcccccccccccCChhhHHHHHH
Confidence 335778888 5663 555555 4557765
Done!