Query 033023
Match_columns 129
No_of_seqs 114 out of 326
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 14:23:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 100.0 9.8E-31 3.4E-35 181.0 3.3 73 46-129 6-78 (80)
2 1n89_A Lipid transfer protein; 96.3 0.0005 1.7E-08 44.7 -0.4 60 54-123 6-65 (67)
3 2rkn_A DIR1 protein, AT5G48485 96.2 0.0016 5.6E-08 42.9 1.5 70 46-124 3-75 (77)
4 1l6h_A LTP2, non-specific lipi 96.0 0.00051 1.7E-08 44.9 -1.6 60 54-123 7-66 (69)
5 2alg_A Non-specific lipid tran 92.8 0.006 2E-07 41.7 -2.6 67 51-123 7-79 (92)
6 1siy_A LTP 1, NS-LTP1, nonspec 91.9 0.024 8.2E-07 38.5 -0.5 70 48-123 3-78 (91)
7 1afh_A Maize nonspecific lipid 88.2 0.048 1.7E-06 37.1 -1.5 71 48-123 4-80 (93)
8 1bwo_A NS-LTP1, nonspecific li 87.9 0.028 9.6E-07 38.2 -2.7 66 52-123 7-78 (90)
9 2ljo_A Non-specific lipid-tran 82.0 0.46 1.6E-05 32.4 1.2 71 53-128 9-88 (93)
10 1t12_A LTP 1, nonspecific lipi 78.2 0.24 8.1E-06 33.6 -1.3 69 48-123 4-78 (91)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.96 E-value=9.8e-31 Score=180.95 Aligned_cols=73 Identities=44% Similarity=1.029 Sum_probs=66.1
Q ss_pred CCCCccccccccccccccceeeeCCCCCCCccchhcCCccchhhHHHHHHhhhcccceeccccchHHHHHhhcCCCCCCC
Q 033023 46 AYCPTNTLKLGACAGVLGTNVAVGSPPYSQCCAILGGLGEVEAALCLCLAIKANVLAIELNWPTNIGLILSLCNRPIPAG 125 (129)
Q Consensus 46 ~~CP~d~lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~~AA~CLC~aikanvLgi~~~~pv~l~~lln~CGk~~P~g 125 (129)
++|| |||+|+||||.. +| +.++||++|+||+|+|||+|||||||+ ||| +|+|+++++|+|+|||++|+|
T Consensus 6 ~~CP----kLgvCanvL~g~--~~--~~~~CC~Ll~GL~dleAAvCLCtaik~--Lgi-lnlpv~L~llln~Cgk~~P~g 74 (80)
T 1hyp_A 6 PSCP----DLSICLNILGGS--LG--TVDDCCALIGGLGDIEAIVCLCIQLRA--LGI-LNLNRNLQLILNSCGRSYPSN 74 (80)
T ss_dssp CCSC----CCGGGGGGGGTC--CT--THHHHHHHHHTSCHHHHHHHHHHHHHH--HTC-SCHHHHHHHHHHHTTCSSCCC
T ss_pred CCCC----chhHHHHHhCcC--CC--CCCccchhhhCcchhhhhhhhhhhccc--cce-eecChhHHHHHHHhCCcCcCC
Confidence 5799 899999999721 12 668999999999999999999999995 899 999999999999999999999
Q ss_pred CccC
Q 033023 126 FKCA 129 (129)
Q Consensus 126 f~C~ 129 (129)
|+|+
T Consensus 75 F~C~ 78 (80)
T 1hyp_A 75 ATCP 78 (80)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9996
No 2
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=96.32 E-value=0.0005 Score=44.71 Aligned_cols=60 Identities=25% Similarity=0.533 Sum_probs=44.1
Q ss_pred ccccccccccceeeeCCCCCCCccchhcCCccchhhHHHHHHhhhcccceeccccchHHHHHhhcCCCCC
Q 033023 54 KLGACAGVLGTNVAVGSPPYSQCCAILGGLGEVEAALCLCLAIKANVLAIELNWPTNIGLILSLCNRPIP 123 (129)
Q Consensus 54 kL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~~AA~CLC~aikanvLgi~~~~pv~l~~lln~CGk~~P 123 (129)
+|..|...+. -|.++..+||.-|++ ...|+|..+|...++..||.+.+ ..|...||..+|
T Consensus 6 ~L~pC~~~v~----~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A-~~Lp~~Cgv~~P 65 (67)
T 1n89_A 6 QLAVCASAIL----SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYGQYIRSPHA-RDTLTSCGLAVP 65 (67)
T ss_dssp TTHHHHHHHT----TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTHHHHTCHHH-HHHHHHHTSCCS
T ss_pred hcccCHHHHc----CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHH-HHHHHHcCCCCC
Confidence 5777877752 244677789999985 47899999987666544665554 457789999987
No 3
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=96.18 E-value=0.0016 Score=42.94 Aligned_cols=70 Identities=16% Similarity=0.364 Sum_probs=47.5
Q ss_pred CCCCccccccccccccccceeeeCCCCCCCccchhcCCccchhhHHHHHHhh---hcccceeccccchHHHHHhhcCCCC
Q 033023 46 AYCPTNTLKLGACAGVLGTNVAVGSPPYSQCCAILGGLGEVEAALCLCLAIK---ANVLAIELNWPTNIGLILSLCNRPI 122 (129)
Q Consensus 46 ~~CP~d~lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~~AA~CLC~aik---anvLgi~~~~pv~l~~lln~CGk~~ 122 (129)
..|-.+..+|..|...+.-+ -..+|...||.-+++ +| -.|||..++ +.-+|| |...+ ..|...||..+
T Consensus 3 ~~C~~~~~~L~pC~~yv~~~--~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~gi--n~~~A-~~LP~~Cgv~~ 73 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVSKE--NPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFGV--DPELA-SALPKQCGLAN 73 (77)
T ss_dssp CBTTBCHHHHHHHGGGGBSS--SCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHTB--CHHHH-HHHHHHTTCSC
T ss_pred chHHhHHHhHhhCHHHHcCC--CCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcCc--CHHHH-HHHHHHcCCCC
Confidence 46777777888998886210 013567789999998 44 389999887 333454 43333 45778999988
Q ss_pred CC
Q 033023 123 PA 124 (129)
Q Consensus 123 P~ 124 (129)
|.
T Consensus 74 p~ 75 (77)
T 2rkn_A 74 AP 75 (77)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 4
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=96.02 E-value=0.00051 Score=44.91 Aligned_cols=60 Identities=27% Similarity=0.566 Sum_probs=43.9
Q ss_pred ccccccccccceeeeCCCCCCCccchhcCCccchhhHHHHHHhhhcccceeccccchHHHHHhhcCCCCC
Q 033023 54 KLGACAGVLGTNVAVGSPPYSQCCAILGGLGEVEAALCLCLAIKANVLAIELNWPTNIGLILSLCNRPIP 123 (129)
Q Consensus 54 kL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~~AA~CLC~aikanvLgi~~~~pv~l~~lln~CGk~~P 123 (129)
+|..|...+. -|.++..+||.-|++ ...|+|..+|...++..||.+.+ ..|...||..+|
T Consensus 7 ~L~pC~~~v~----~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A-~~Lp~~Cgv~~P 66 (69)
T 1l6h_A 7 QLTVCTGAIA----GGARPTAACCSSLRA-----QQGCFCQFAKDPRYGRYVNSPNA-RKAVSSCGIALP 66 (69)
T ss_dssp THHHHHHHHT----TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHHHHTTTTTG-GGCCCCCSSCSC
T ss_pred hcccCHHHHc----CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHH-HHHHHHcCCCCC
Confidence 5778887752 244677789999985 48899999987656545665555 446789999987
No 5
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=92.82 E-value=0.006 Score=41.66 Aligned_cols=67 Identities=19% Similarity=0.398 Sum_probs=44.8
Q ss_pred cccccccccccccceeeeCCCCCCCccchhcCCccc-----h-hhHHHHHHhhhcccceeccccchHHHHHhhcCCCCC
Q 033023 51 NTLKLGACAGVLGTNVAVGSPPYSQCCAILGGLGEV-----E-AALCLCLAIKANVLAIELNWPTNIGLILSLCNRPIP 123 (129)
Q Consensus 51 d~lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~-----~-AA~CLC~aikanvLgi~~~~pv~l~~lln~CGk~~P 123 (129)
...+|.-|.+.+. -|.++..+||.-+++|... | -+.|||...++.-++ .||.+.+ ..|...||-.+|
T Consensus 7 v~~~L~pCl~y~~----~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~-~in~~~A-~~LP~~Cgv~~p 79 (92)
T 2alg_A 7 VSSSLAPCIPYVR----GGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP-GVNPNNA-AALPGKCGVSIP 79 (92)
T ss_dssp HHHHHGGGHHHHH----HCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST-TCCHHHH-HHHHHHTTCCCS
T ss_pred HHHhccCcHHHHc----CCCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC-ccChHHH-HHHHHHcCCCCC
Confidence 3447788888863 1234556899999998631 2 157999876666563 4554444 557889999877
No 6
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=91.87 E-value=0.024 Score=38.53 Aligned_cols=70 Identities=24% Similarity=0.466 Sum_probs=44.7
Q ss_pred CCccccccccccccccceeeeCCCCCCCccchhcCCccc-----h-hhHHHHHHhhhcccceeccccchHHHHHhhcCCC
Q 033023 48 CPTNTLKLGACAGVLGTNVAVGSPPYSQCCAILGGLGEV-----E-AALCLCLAIKANVLAIELNWPTNIGLILSLCNRP 121 (129)
Q Consensus 48 CP~d~lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~-----~-AA~CLC~aikanvLgi~~~~pv~l~~lln~CGk~ 121 (129)
|-....+|.-|.+.+. -|.+|..+||.-+++|.+. | -+.|+|..-.+.-++ .||...+ ..|...||..
T Consensus 3 C~~v~~~L~pCl~yv~----~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~-~in~~~A-~~LP~~Cgv~ 76 (91)
T 1siy_A 3 CGQVQGNLAQCIGFLQ----KGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNA-EALPGKCGVN 76 (91)
T ss_dssp TTTTHHHHHHHHHHHT----SCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCS-SCCHHHH-HHHHHHHTCC
T ss_pred HHHHHHhccCcHHHHh----CCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccC-CcCHHHH-HHHHHHcCCC
Confidence 5555567888888863 1234667899999998643 3 268999732222232 4554444 4578899998
Q ss_pred CC
Q 033023 122 IP 123 (129)
Q Consensus 122 ~P 123 (129)
+|
T Consensus 77 ~p 78 (91)
T 1siy_A 77 IP 78 (91)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 7
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=88.15 E-value=0.048 Score=37.12 Aligned_cols=71 Identities=30% Similarity=0.486 Sum_probs=44.9
Q ss_pred CCccccccccccccccceeeeCCCCCCCccchhcCCcc---chh---hHHHHHHhhhcccceeccccchHHHHHhhcCCC
Q 033023 48 CPTNTLKLGACAGVLGTNVAVGSPPYSQCCAILGGLGE---VEA---ALCLCLAIKANVLAIELNWPTNIGLILSLCNRP 121 (129)
Q Consensus 48 CP~d~lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d---~~A---A~CLC~aikanvLgi~~~~pv~l~~lln~CGk~ 121 (129)
|-....+|.-|.+.+.- -+.+|..+||.-+++|.+ ..+ +.|+|....+.-++ .||...+ ..|-..||-.
T Consensus 4 C~~v~~~L~pCl~y~~~---~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~-~in~~~A-~~LP~~C~v~ 78 (93)
T 1afh_A 4 CGQVASAIAPCISYARG---QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS-GLNAGNA-ASIPSKCGVS 78 (93)
T ss_dssp SHHHHHHHGGGHHHHTT---SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST-TCCHHHH-HHHHHHHHCC
T ss_pred hHHHHHhccCcHHHHcC---CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc-CcCHHHH-HHHHHHcCCC
Confidence 44445578888888631 123356689999999853 222 68999765554443 3444443 4577899988
Q ss_pred CC
Q 033023 122 IP 123 (129)
Q Consensus 122 ~P 123 (129)
+|
T Consensus 79 ~p 80 (93)
T 1afh_A 79 IP 80 (93)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 8
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=87.95 E-value=0.028 Score=38.16 Aligned_cols=66 Identities=24% Similarity=0.403 Sum_probs=41.5
Q ss_pred ccccccccccccceeeeCCCCCCCccchhcCCccc---h---hhHHHHHHhhhcccceeccccchHHHHHhhcCCCCC
Q 033023 52 TLKLGACAGVLGTNVAVGSPPYSQCCAILGGLGEV---E---AALCLCLAIKANVLAIELNWPTNIGLILSLCNRPIP 123 (129)
Q Consensus 52 ~lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~---~---AA~CLC~aikanvLgi~~~~pv~l~~lln~CGk~~P 123 (129)
..+|.-|.+.+. -|.++..+||.-+++|.+. . -+.|+|..-.+.-++ .+|...+ ..|...||-.+|
T Consensus 7 ~~~L~pCl~y~~----~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A-~~LP~~C~v~~p 78 (90)
T 1bwo_A 7 DSLVRPCLSYVQ----GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-NLNEDNA-RSIPPKCGVNLP 78 (90)
T ss_dssp HHHHGGGHHHHT----TCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT-TCCHHHH-HTHHHHHTCCCS
T ss_pred HHhhcccHHHHc----CCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC-CcCHHHH-HHHHHHcCCCCC
Confidence 446778888863 1223667899999998732 1 268999433333332 3454433 557789999876
No 9
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=81.96 E-value=0.46 Score=32.44 Aligned_cols=71 Identities=25% Similarity=0.418 Sum_probs=45.4
Q ss_pred cccccccccccceeeeCCCCCCCccchhcCCccc----hhhHHHHHHhhhcccce-eccccchHHHHHhhcCCCCC----
Q 033023 53 LKLGACAGVLGTNVAVGSPPYSQCCAILGGLGEV----EAALCLCLAIKANVLAI-ELNWPTNIGLILSLCNRPIP---- 123 (129)
Q Consensus 53 lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~----~AA~CLC~aikanvLgi-~~~~pv~l~~lln~CGk~~P---- 123 (129)
..|.-|.+++. -|..+..+||.=+++|.+. +--.|+|..||...-++ .+|..- ...|-..||-++|
T Consensus 9 ~~L~pCl~Yv~----g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~-a~~LP~~CgV~~p~~Is 83 (93)
T 2ljo_A 9 SDLSPCLTYLT----GGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNN-AAALPGKCGVNIPYKIS 83 (93)
T ss_dssp HHHHHHHHHHT----TSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHH-HHHHHHHHTCCCSSCCS
T ss_pred HHHHhHHHHHc----CCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHH-HHhhhHhcCCCCCCCCC
Confidence 35666777652 1223567899988888653 23478888888654332 344333 3557889999988
Q ss_pred CCCcc
Q 033023 124 AGFKC 128 (129)
Q Consensus 124 ~gf~C 128 (129)
..+.|
T Consensus 84 ~~~dC 88 (93)
T 2ljo_A 84 TTTNC 88 (93)
T ss_dssp TTCCG
T ss_pred CCCCC
Confidence 56666
No 10
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=78.24 E-value=0.24 Score=33.59 Aligned_cols=69 Identities=26% Similarity=0.479 Sum_probs=42.5
Q ss_pred CCccccccccccccccceeeeCCCCCCCccchhcCCccch------hhHHHHHHhhhcccceeccccchHHHHHhhcCCC
Q 033023 48 CPTNTLKLGACAGVLGTNVAVGSPPYSQCCAILGGLGEVE------AALCLCLAIKANVLAIELNWPTNIGLILSLCNRP 121 (129)
Q Consensus 48 CP~d~lkL~vCa~vL~~~~~~g~p~~~~CC~li~gL~d~~------AA~CLC~aikanvLgi~~~~pv~l~~lln~CGk~ 121 (129)
|-....+|.-|.+.+.- |.++. +||.-+++|...- -+.|+|..--++-++ .+|...+ ..|-..||-.
T Consensus 4 C~~v~~~L~pCl~y~~~----~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A-~~LP~~C~v~ 76 (91)
T 1t12_A 4 CGQVTSNLAPCLAYLRN----TGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS-GINLGKA-AGLPSTCGVN 76 (91)
T ss_dssp HHHHHHHTHHHHHHHTT----SSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT-TCCHHHH-HHHHHHTTCC
T ss_pred hHHHHHhccCcHHHHcC----CCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC-CcChhHH-HHHHHHcCCC
Confidence 33334567778888631 22255 8999999987531 268999633233343 4454443 4577899998
Q ss_pred CC
Q 033023 122 IP 123 (129)
Q Consensus 122 ~P 123 (129)
+|
T Consensus 77 ~p 78 (91)
T 1t12_A 77 IP 78 (91)
T ss_dssp CS
T ss_pred CC
Confidence 76
Done!