Query 033025
Match_columns 129
No_of_seqs 104 out of 165
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:53:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00335 Tetraspannin: Tetrasp 94.3 0.02 4.4E-07 41.5 1.2 60 54-113 161-220 (221)
2 PF09889 DUF2116: Uncharacteri 83.8 2.2 4.8E-05 28.5 3.9 30 72-101 22-51 (59)
3 PF05393 Hum_adeno_E3A: Human 71.3 4.2 9E-05 29.8 2.6 22 96-117 43-64 (94)
4 PF12273 RCR: Chitin synthesis 69.0 4.8 0.0001 29.5 2.6 7 109-115 23-29 (130)
5 KOG3882 Tetraspanin family int 67.9 22 0.00047 27.7 6.2 48 69-116 183-230 (237)
6 PF10721 DUF2514: Protein of u 57.3 11 0.00025 29.2 2.9 24 86-109 1-24 (162)
7 PF10164 DUF2367: Uncharacteri 57.3 8.8 0.00019 28.3 2.1 41 69-115 50-90 (98)
8 PF12191 stn_TNFRSF12A: Tumour 57.1 1.5 3.4E-05 33.7 -1.9 62 58-120 40-110 (129)
9 PF04854 DUF624: Protein of un 56.7 27 0.00058 22.9 4.2 29 76-104 46-74 (77)
10 PF13260 DUF4051: Protein of u 54.5 15 0.00032 24.4 2.6 26 90-115 4-33 (54)
11 PF05374 Mu-conotoxin: Mu-Cono 54.3 5.8 0.00013 22.1 0.6 9 28-36 3-11 (22)
12 PF06422 PDR_CDR: CDR ABC tran 53.6 15 0.00032 26.2 2.8 24 82-105 45-68 (103)
13 PF00957 Synaptobrevin: Synapt 49.7 23 0.00051 23.9 3.2 10 86-95 63-72 (89)
14 PF11770 GAPT: GRB2-binding ad 48.6 16 0.00034 29.1 2.4 24 88-111 9-32 (158)
15 PF00957 Synaptobrevin: Synapt 47.8 33 0.00071 23.2 3.6 26 83-108 63-88 (89)
16 PF09125 COX2-transmemb: Cytoc 46.9 45 0.00097 20.8 3.7 25 78-102 8-32 (38)
17 KOG1666 V-SNARE [Intracellular 46.8 26 0.00057 29.2 3.5 25 81-105 193-217 (220)
18 PF01708 Gemini_mov: Geminivir 46.3 6.4 0.00014 28.7 -0.1 28 85-112 33-60 (91)
19 PF14991 MLANA: Protein melan- 46.2 6.7 0.00014 29.8 0.0 19 95-113 31-49 (118)
20 PF13061 DUF3923: Protein of u 45.6 22 0.00047 24.1 2.4 26 76-101 30-55 (66)
21 PF11807 DUF3328: Domain of un 45.1 22 0.00049 26.2 2.7 33 83-115 7-39 (217)
22 PRK10476 multidrug resistance 44.7 14 0.00031 30.5 1.7 25 83-107 7-31 (346)
23 TIGR01478 STEVOR variant surfa 42.3 26 0.00057 30.3 3.0 23 84-106 259-281 (295)
24 KOG3658 Tumor necrosis factor- 41.0 33 0.00072 33.1 3.6 28 85-114 682-709 (764)
25 PTZ00370 STEVOR; Provisional 40.9 28 0.00061 30.1 3.0 24 83-106 254-277 (296)
26 PF05454 DAG1: Dystroglycan (D 38.4 10 0.00023 32.3 0.0 31 85-115 144-174 (290)
27 PF07423 DUF1510: Protein of u 37.6 50 0.0011 27.1 3.8 28 85-112 9-36 (217)
28 PF07172 GRP: Glycine rich pro 36.2 42 0.00092 24.0 2.9 16 88-103 4-19 (95)
29 PF12911 OppC_N: N-terminal TM 35.9 85 0.0018 19.2 3.9 28 78-107 8-35 (56)
30 PF11694 DUF3290: Protein of u 35.1 29 0.00063 26.8 2.0 23 81-103 41-63 (149)
31 PF13800 Sigma_reg_N: Sigma fa 34.7 54 0.0012 22.6 3.1 24 83-106 11-34 (96)
32 TIGR02459 CbtB cobalt transpor 34.3 57 0.0012 22.1 3.1 17 93-109 23-39 (60)
33 PF15298 AJAP1_PANP_C: AJAP1/P 34.0 25 0.00054 29.0 1.5 31 90-120 105-136 (205)
34 PF05568 ASFV_J13L: African sw 34.0 38 0.00081 27.3 2.5 26 88-113 32-57 (189)
35 KOG0810 SNARE protein Syntaxin 32.9 29 0.00062 29.7 1.8 32 75-106 259-290 (297)
36 PF05915 DUF872: Eukaryotic pr 32.5 67 0.0015 23.8 3.5 21 81-101 36-56 (115)
37 PF02723 NS3_envE: Non-structu 31.5 37 0.0008 24.2 1.9 7 107-113 42-48 (82)
38 PF07673 DUF1602: Protein of u 31.3 14 0.00031 22.9 -0.2 13 23-35 16-28 (39)
39 PF13937 DUF4212: Domain of un 31.2 52 0.0011 23.1 2.6 27 89-120 51-77 (81)
40 PF06024 DUF912: Nucleopolyhed 31.0 42 0.00092 23.9 2.2 29 83-111 58-86 (101)
41 PF11511 RhodobacterPufX: Intr 30.6 71 0.0015 22.1 3.1 20 89-108 31-50 (67)
42 PLN02518 pheophorbide a oxygen 30.3 60 0.0013 29.9 3.5 18 70-89 466-483 (539)
43 PRK11653 hypothetical protein; 29.3 59 0.0013 27.0 3.0 31 78-109 8-38 (225)
44 PF15188 CCDC-167: Coiled-coil 29.2 83 0.0018 22.5 3.4 26 79-104 59-84 (85)
45 PF01299 Lamp: Lysosome-associ 28.2 38 0.00083 28.0 1.7 29 88-116 272-300 (306)
46 COG5605 Predicted small integr 28.0 1.2E+02 0.0027 22.6 4.2 23 75-97 60-84 (115)
47 TIGR01732 tiny_TM_bacill conse 27.7 63 0.0014 18.7 2.0 7 96-102 14-20 (26)
48 PF01102 Glycophorin_A: Glycop 27.2 78 0.0017 23.8 3.1 18 89-106 71-88 (122)
49 TIGR01625 YidE_YbjL_dupl AspT/ 27.1 1.1E+02 0.0025 23.4 4.1 38 76-113 73-112 (154)
50 PHA02673 ORF109 EEV glycoprote 27.0 81 0.0018 25.2 3.3 38 76-113 16-63 (161)
51 PHA02947 S-S bond formation pa 26.9 32 0.0007 28.5 1.1 22 103-128 191-212 (215)
52 PF15176 LRR19-TM: Leucine-ric 26.4 64 0.0014 24.0 2.4 34 84-117 15-49 (102)
53 PRK13872 conjugal transfer pro 26.4 1.3E+02 0.0027 24.0 4.4 24 76-99 31-54 (228)
54 PF10215 Ost4: Oligosaccaryltr 26.4 1E+02 0.0023 18.6 3.0 19 88-106 9-27 (35)
55 PHA02955 hypothetical protein; 25.5 45 0.00097 27.6 1.7 7 122-128 206-212 (213)
56 PF02932 Neur_chan_memb: Neuro 25.5 96 0.0021 21.4 3.1 11 82-92 206-216 (237)
57 KOG0812 SNARE protein SED5/Syn 24.6 67 0.0015 28.0 2.6 23 84-106 288-310 (311)
58 PF09489 CbtB: Probable cobalt 23.5 1.4E+02 0.0031 19.6 3.4 25 85-109 9-33 (54)
59 PF01299 Lamp: Lysosome-associ 23.5 1E+02 0.0022 25.6 3.4 29 89-117 270-298 (306)
60 PF06679 DUF1180: Protein of u 23.5 78 0.0017 25.0 2.6 32 91-124 99-130 (163)
61 PRK14756 hypothetical protein; 23.1 1.3E+02 0.0028 17.8 2.8 19 88-106 6-24 (29)
62 PF13129 DUF3953: Protein of u 23.0 34 0.00073 21.2 0.4 25 79-103 14-38 (42)
63 PRK14762 membrane protein; Pro 22.9 1.2E+02 0.0026 17.6 2.6 14 91-104 7-20 (27)
64 PRK14750 kdpF potassium-transp 22.9 1.4E+02 0.0029 17.7 2.9 24 89-114 3-26 (29)
65 KOG1747 Protein tyrosine kinas 22.7 43 0.00094 29.5 1.1 16 73-88 272-287 (342)
66 PLN02595 cytochrome c oxidase 22.7 91 0.002 23.2 2.7 22 84-106 42-63 (102)
67 PF11669 WBP-1: WW domain-bind 22.5 77 0.0017 22.8 2.2 7 81-87 17-23 (102)
68 TIGR02484 CitB CitB domain pro 22.4 1.4E+02 0.003 26.6 4.1 10 65-74 47-56 (372)
69 PF07672 MFS_Mycoplasma: Mycop 22.4 1.5E+02 0.0032 25.2 4.2 31 77-107 31-62 (267)
70 TIGR03647 Na_symport_sm probab 22.3 96 0.0021 21.6 2.6 26 89-119 47-72 (77)
71 KOG3909 Queuine-tRNA ribosyltr 22.3 1.1E+02 0.0023 27.7 3.5 28 67-94 322-349 (414)
72 PHA03283 envelope glycoprotein 22.0 82 0.0018 29.5 2.8 33 84-116 397-430 (542)
73 KOG0860 Synaptobrevin/VAMP-lik 21.8 1.2E+02 0.0026 23.0 3.2 6 86-91 89-94 (116)
74 PF14857 TMEM151: TMEM151 fami 21.6 86 0.0019 28.5 2.8 23 90-112 68-90 (425)
75 PRK10617 cytochrome c-type pro 21.0 1.9E+02 0.004 23.4 4.4 10 77-86 9-18 (200)
76 PF14610 DUF4448: Protein of u 21.0 33 0.00072 26.5 0.1 32 85-116 156-187 (189)
77 PF03100 CcmE: CcmE; InterPro 20.9 32 0.0007 25.4 0.0 25 82-106 1-25 (131)
78 KOG0860 Synaptobrevin/VAMP-lik 20.9 1.3E+02 0.0027 22.8 3.2 22 85-106 93-114 (116)
79 PF02439 Adeno_E3_CR2: Adenovi 20.2 1.2E+02 0.0027 18.8 2.5 25 89-113 6-30 (38)
No 1
>PF00335 Tetraspannin: Tetraspanin family RDS_ROM1 subfamily; InterPro: IPR018499 A number of eukaryotic CD antigens have been shown to be related []. CD9 (also called DRAP-27, MRP-1 or p24) upregulates HB-EGF activity as a receptor for diphtheria toxin as well as its juxtacrine activity. CD9 mAbs modulate cell adhesion and migration and trigger platelet activation that is blocked by mAbs directed to the platelet Fc receptor CD32. In mice, CD9 mAb KMC8.8 has been shown to inhibit the production of myeloid cells in vitro and has a costimulatory activity for T cells. CD9 is a type III membrane protein, with four putative transmembrane domains. CD37 (or gp52-40) is involved in signal transduction and serves as a stable marker for malignancies derived from mature B cells, like B-CLL, HCL, and all types of B-NHL. CD63 transfection reduced melanoma cell motility on fibronectin, collagen and laminin, and reduced the growth and metastasis of melanoma cells in nude mice []. CD63 has been used as a marker for late endosomes and for primary melanomas. These proteins are all type II membrane proteins: they contain an N-terminal transmembrane (TM) domain, which acts both as a signal sequence and a membrane anchor, and 3 additional TM regions (hence the name 'TM4'). The sequences contain a number of conserved cysteine residues. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016021 integral to membrane; PDB: 1IV5_A 1G8Q_A.
Probab=94.31 E-value=0.02 Score=41.46 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=25.1
Q ss_pred CCccccccCccCcceecCccchhhHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhhccccc
Q 033025 54 DMDCLQWGNDQMQLCYNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRN 113 (129)
Q Consensus 54 ~~DC~~WsNd~~~LCy~C~SCKAGvl~~lk~~W~~~ai~niv~lv~Li~vy~vgCcafrn 113 (129)
.+++..+..++.......+.|+..+.+.+++.+..++++.++++++.++...++++-.|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~gC~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~l~~~ 220 (221)
T PF00335_consen 161 CPDCQCPDDCSSENSIYTRGCYDKLREYLRSYLKYIGIVSLAILVLQLIGIILACCLCRH 220 (221)
T ss_dssp ---TCS-TTCCCCHCCTST-HHHHHHHHHCT-----------------------------
T ss_pred cccccccccccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 678899999999999999999999999999999999999999988888888888776554
No 2
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=83.75 E-value=2.2 Score=28.55 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=22.8
Q ss_pred ccchhhHHHHHHhhhhHhHHHHHHHHHHHH
Q 033025 72 DSCKAGLLANLKKEWRRVDIILIVTLVALI 101 (129)
Q Consensus 72 ~SCKAGvl~~lk~~W~~~ai~niv~lv~Li 101 (129)
+.|+.-....-|+.++.-.|+-++++++|+
T Consensus 22 ~~C~~~~~k~qk~~~~~~~i~~~~~i~~l~ 51 (59)
T PF09889_consen 22 PKCREEYRKRQKRMRKTQYIFFGIFILFLA 51 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999777777666665443
No 3
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=71.32 E-value=4.2 Score=29.81 Aligned_cols=22 Identities=9% Similarity=0.498 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhccccccchh
Q 033025 96 TLVALILVYLIGCCAFRNDKTE 117 (129)
Q Consensus 96 ~lv~Li~vy~vgCcafrn~rr~ 117 (129)
++|.+|+.|++-|-+.|.+||.
T Consensus 43 iFil~VilwfvCC~kRkrsRrP 64 (94)
T PF05393_consen 43 IFILLVILWFVCCKKRKRSRRP 64 (94)
T ss_pred HHHHHHHHHHHHHHHhhhccCC
Confidence 3467788899988888888873
No 4
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=69.02 E-value=4.8 Score=29.47 Aligned_cols=7 Identities=14% Similarity=0.088 Sum_probs=4.0
Q ss_pred ccccccc
Q 033025 109 CAFRNDK 115 (129)
Q Consensus 109 cafrn~r 115 (129)
...|..|
T Consensus 23 ~rRR~r~ 29 (130)
T PF12273_consen 23 NRRRRRR 29 (130)
T ss_pred HHHHhhc
Confidence 4666555
No 5
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=67.93 E-value=22 Score=27.74 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=37.9
Q ss_pred ecCccchhhHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhhccccccch
Q 033025 69 YNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDKT 116 (129)
Q Consensus 69 y~C~SCKAGvl~~lk~~W~~~ai~niv~lv~Li~vy~vgCcafrn~rr 116 (129)
...+-|-+-+.+.++++...++++.+.++++-++....+++..+.-|+
T Consensus 183 ~~~~GC~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~a~~l~~~i~~ 230 (237)
T KOG3882|consen 183 IYTEGCLEKLSSWLESNLLIIGGVGLGIAVLELLGMILACCLANAIRN 230 (237)
T ss_pred hhccccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999988888888888888766555444
No 6
>PF10721 DUF2514: Protein of unknown function (DUF2514); InterPro: IPR019659 This protein family is conserved in bacteria and some viruses. The function is not known.
Probab=57.34 E-value=11 Score=29.23 Aligned_cols=24 Identities=25% Similarity=0.595 Sum_probs=20.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHhhc
Q 033025 86 WRRVDIILIVTLVALILVYLIGCC 109 (129)
Q Consensus 86 W~~~ai~niv~lv~Li~vy~vgCc 109 (129)
|+.+.+|.+++++++..+|+-|=.
T Consensus 1 W~~l~~vllla~~~~~g~y~~G~~ 24 (162)
T PF10721_consen 1 WKQLAIVLLLAAALLWGAYAHGYA 24 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccH
Confidence 899999999998888888988853
No 7
>PF10164 DUF2367: Uncharacterized conserved protein (DUF2367); InterPro: IPR019317 This is a highly conserved set of proteins which contains three pairs of cysteine residues within a length of 42 amino acids and is rich in proline residues towards the N terminus. It includes a membrane protein that has been found to be highly expressed in the mouse brain and consequently, several members have been assigned as brain protein i3 (Bri3). Their function is unknown.
Probab=57.25 E-value=8.8 Score=28.32 Aligned_cols=41 Identities=20% Similarity=0.565 Sum_probs=25.0
Q ss_pred ecCccchhhHHHHHHhhhhHhHHHHHHHHHHHHHHHHHhhccccccc
Q 033025 69 YNCDSCKAGLLANLKKEWRRVDIILIVTLVALILVYLIGCCAFRNDK 115 (129)
Q Consensus 69 y~C~SCKAGvl~~lk~~W~~~ai~niv~lv~Li~vy~vgCcafrn~r 115 (129)
=.|-+|+.|+|+. +..-+.|+-.|+++=|=|+ -|.+.|..|
T Consensus 50 ggCp~CrvG~le~---~ft~~Gi~~AI~fFPiGil---cc~~~r~~r 90 (98)
T PF10164_consen 50 GGCPACRVGVLED---SFTCCGILCAIFFFPIGIL---CCLAMRERR 90 (98)
T ss_pred cCCCCCceeeecc---cccHHHHHHHHHHHhhHHH---HhhhcCccc
Confidence 4899999999974 6666666655544333222 345555543
No 8
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=57.12 E-value=1.5 Score=33.67 Aligned_cols=62 Identities=27% Similarity=0.395 Sum_probs=18.7
Q ss_pred ccccCccCcceecCccchhh--------HHHHHHhhhhHhHHHHHHH-HHHHHHHHHHhhccccccchhhhh
Q 033025 58 LQWGNDQMQLCYNCDSCKAG--------LLANLKKEWRRVDIILIVT-LVALILVYLIGCCAFRNDKTEDLF 120 (129)
Q Consensus 58 ~~WsNd~~~LCy~C~SCKAG--------vl~~lk~~W~~~ai~niv~-lv~Li~vy~vgCcafrn~rr~~~~ 120 (129)
..||-|-+ .|-+|.|||+- -.+.--..|+-+.++..-+ -++||++...|--..|.-||++.|
T Consensus 40 ~sWs~dLd-kCm~CssC~~~P~S~~C~~C~a~p~~p~~l~~pi~~sal~v~lVl~llsg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 40 SSWSADLD-KCMSCSSCPAYPKSPFCQGCPAAPPAPFPLLWPILGSALSVVLVLALLSGFLVWRRCRRREKF 110 (129)
T ss_dssp EEEETTTT-EEEECCCHCC-TT-CCCCCHSS-SSS-SSSS--------------------------------
T ss_pred CcCccccc-ccccCccCCCCCCCccccCCCCCCCCCcceehhhhhhHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 46998865 99999999852 2221122366555552221 122333333455455665665544
No 9
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=56.66 E-value=27 Score=22.86 Aligned_cols=29 Identities=14% Similarity=0.418 Sum_probs=23.2
Q ss_pred hhHHHHHHhhhhHhHHHHHHHHHHHHHHH
Q 033025 76 AGLLANLKKEWRRVDIILIVTLVALILVY 104 (129)
Q Consensus 76 AGvl~~lk~~W~~~ai~niv~lv~Li~vy 104 (129)
..+.+..|++|++..++.++.++++++.+
T Consensus 46 ~~f~~~fk~nf~~~~~~~~~~~~~~~il~ 74 (77)
T PF04854_consen 46 RDFWRAFKQNFKQSLLLGLILLLLLAILY 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999998888877776655
No 10
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=54.50 E-value=15 Score=24.38 Aligned_cols=26 Identities=35% Similarity=0.639 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHh----hccccccc
Q 033025 90 DIILIVTLVALILVYLIG----CCAFRNDK 115 (129)
Q Consensus 90 ai~niv~lv~Li~vy~vg----Ccafrn~r 115 (129)
+..=||+++++++-|.+- |-|||..|
T Consensus 4 awywivli~lv~~gy~~hmkrycrafrqdr 33 (54)
T PF13260_consen 4 AWYWIVLIVLVVVGYFCHMKRYCRAFRQDR 33 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 444566666666666664 89999876
No 11
>PF05374 Mu-conotoxin: Mu-Conotoxin; InterPro: IPR008036 This entry represents Mu-type conotoxins. Cone snail toxins, conotoxins, are small peptides with disulphide connectivity, that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cystine knot scaffold. The knottin scaffold is a very special disulphide through disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network as well as specific amino acids in inter-cysteine loops provide specificity of conotoxin []. The cysteine arrangement is the same for omega, delta and kappa families, but omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangement, but the knottin scaffold is not observed. Conotoxin gm9a, a putative 27-residue polypeptide encoded by Conus gloriamaris, has been shown to adopt an inhibitory cystine knot motif constrained by three disulphide bonds [, ].Mu conotoxins target the voltage-gated sodium channels, preferential skeletal muscle [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangement [] and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1R9I_A 1GIB_A 1TCJ_A 1TCG_A 1TCK_A 1TCH_A.
Probab=54.26 E-value=5.8 Score=22.09 Aligned_cols=9 Identities=56% Similarity=1.767 Sum_probs=7.6
Q ss_pred ccCCCCCCC
Q 033025 28 CCKPPTECG 36 (129)
Q Consensus 28 CCKPP~~Cg 36 (129)
||+||-+|-
T Consensus 3 CC~~Pk~Ck 11 (22)
T PF05374_consen 3 CCGPPKSCK 11 (22)
T ss_dssp SSSSSTGGC
T ss_pred ccCCCcccc
Confidence 899998884
No 12
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=53.62 E-value=15 Score=26.20 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=15.7
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHH
Q 033025 82 LKKEWRRVDIILIVTLVALILVYL 105 (129)
Q Consensus 82 lk~~W~~~ai~niv~lv~Li~vy~ 105 (129)
....||.+.|+-..+++|+++.++
T Consensus 45 ~sh~WRN~GIli~f~i~f~~~~~~ 68 (103)
T PF06422_consen 45 YSHRWRNFGILIAFWIFFIVLTLL 68 (103)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHH
Confidence 456899988876665555554433
No 13
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=49.70 E-value=23 Score=23.92 Aligned_cols=10 Identities=30% Similarity=1.019 Sum_probs=4.2
Q ss_pred hhHhHHHHHH
Q 033025 86 WRRVDIILIV 95 (129)
Q Consensus 86 W~~~ai~niv 95 (129)
|++..+.-++
T Consensus 63 ~~~~k~~~i~ 72 (89)
T PF00957_consen 63 WRNYKLYIII 72 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhH
Confidence 4444333333
No 14
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=48.60 E-value=16 Score=29.09 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=19.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhhccc
Q 033025 88 RVDIILIVTLVALILVYLIGCCAF 111 (129)
Q Consensus 88 ~~ai~niv~lv~Li~vy~vgCcaf 111 (129)
.++|.-.|+|++|+++..|||--.
T Consensus 9 sv~i~igi~Ll~lLl~cgiGcvwh 32 (158)
T PF11770_consen 9 SVAISIGISLLLLLLLCGIGCVWH 32 (158)
T ss_pred hHHHHHHHHHHHHHHHHhcceEEE
Confidence 456777778888999999999655
No 15
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=47.76 E-value=33 Score=23.18 Aligned_cols=26 Identities=15% Similarity=0.597 Sum_probs=16.0
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHhh
Q 033025 83 KKEWRRVDIILIVTLVALILVYLIGC 108 (129)
Q Consensus 83 k~~W~~~ai~niv~lv~Li~vy~vgC 108 (129)
-++++-..++-+++++++++++.+.|
T Consensus 63 ~~~~k~~~i~~~iv~~~~~~i~~~~~ 88 (89)
T PF00957_consen 63 WRNYKLYIIIIIIVIIIILIIIIVIC 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhHHhhhhhhhhHHHHHHh
Confidence 36667667777666666666665554
No 16
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=46.95 E-value=45 Score=20.82 Aligned_cols=25 Identities=20% Similarity=0.495 Sum_probs=19.3
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHH
Q 033025 78 LLANLKKEWRRVDIILIVTLVALIL 102 (129)
Q Consensus 78 vl~~lk~~W~~~ai~niv~lv~Li~ 102 (129)
.++.-.+.|-.++++-|++++.||.
T Consensus 8 ai~aYEr~Wi~F~l~mi~vFi~li~ 32 (38)
T PF09125_consen 8 AIEAYERGWIAFALAMILVFIALIG 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5667788999999888877776653
No 17
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.84 E-value=26 Score=29.17 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=20.6
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHH
Q 033025 81 NLKKEWRRVDIILIVTLVALILVYL 105 (129)
Q Consensus 81 ~lk~~W~~~ai~niv~lv~Li~vy~ 105 (129)
-+++.|--.+|+-+.++++|+++|+
T Consensus 193 ~~~nk~~~~aii~~l~~~il~ilY~ 217 (220)
T KOG1666|consen 193 LIRNKFTLTAIIALLVLAILLILYS 217 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888999886
No 18
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=46.34 E-value=6.4 Score=28.71 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=21.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhcccc
Q 033025 85 EWRRVDIILIVTLVALILVYLIGCCAFR 112 (129)
Q Consensus 85 ~W~~~ai~niv~lv~Li~vy~vgCcafr 112 (129)
.|.++..+.|++||.++++|..=-..+|
T Consensus 33 ~ws~vv~v~i~~lvaVg~~YL~y~~fLk 60 (91)
T PF01708_consen 33 PWSRVVEVAIFTLVAVGCLYLAYTWFLK 60 (91)
T ss_pred cceeEeeeeehHHHHHHHHHHHHHHHHH
Confidence 6999999999999888888876444333
No 19
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=46.24 E-value=6.7 Score=29.84 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccccc
Q 033025 95 VTLVALILVYLIGCCAFRN 113 (129)
Q Consensus 95 v~lv~Li~vy~vgCcafrn 113 (129)
|++|+|.++..+||+-+|.
T Consensus 31 iL~VILgiLLliGCWYckR 49 (118)
T PF14991_consen 31 ILIVILGILLLIGCWYCKR 49 (118)
T ss_dssp -------------------
T ss_pred eHHHHHHHHHHHhheeeee
Confidence 4556677778899998885
No 20
>PF13061 DUF3923: Protein of unknown function (DUF3923)
Probab=45.58 E-value=22 Score=24.14 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred hhHHHHHHhhhhHhHHHHHHHHHHHH
Q 033025 76 AGLLANLKKEWRRVDIILIVTLVALI 101 (129)
Q Consensus 76 AGvl~~lk~~W~~~ai~niv~lv~Li 101 (129)
||+.++.+-+|-.+++..+.++++++
T Consensus 30 aGv~qT~~~k~itl~vl~i~~~~i~i 55 (66)
T PF13061_consen 30 AGVVQTPELKLITLAVLGIFFIIILI 55 (66)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999888877766655
No 21
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=45.11 E-value=22 Score=26.16 Aligned_cols=33 Identities=18% Similarity=0.565 Sum_probs=20.8
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHhhccccccc
Q 033025 83 KKEWRRVDIILIVTLVALILVYLIGCCAFRNDK 115 (129)
Q Consensus 83 k~~W~~~ai~niv~lv~Li~vy~vgCcafrn~r 115 (129)
++.|+...++.++++++++++++++-..++..+
T Consensus 7 ~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 39 (217)
T PF11807_consen 7 RRRWRRLLLLFLLLLILSLLLLVLAVLLRRSSS 39 (217)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 356888766666666666666666655555443
No 22
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=44.68 E-value=14 Score=30.51 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.4
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHh
Q 033025 83 KKEWRRVDIILIVTLVALILVYLIG 107 (129)
Q Consensus 83 k~~W~~~ai~niv~lv~Li~vy~vg 107 (129)
|..|+++.++-|+++++|+++|.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (346)
T PRK10476 7 KSPRKKLPALAIVALAIVALVFVIW 31 (346)
T ss_pred CCCcccchhHHHHHHHHHHHHHHhe
Confidence 5679999999999998888888875
No 23
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=42.28 E-value=26 Score=30.32 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=19.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHH
Q 033025 84 KEWRRVDIILIVTLVALILVYLI 106 (129)
Q Consensus 84 ~~W~~~ai~niv~lv~Li~vy~v 106 (129)
--|..+|+|.|++.|+|||.|.=
T Consensus 259 ~Pcgiaalvllil~vvliiLYiW 281 (295)
T TIGR01478 259 LPYGIAALVLIILTVVLIILYIW 281 (295)
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999974
No 24
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=40.96 E-value=33 Score=33.10 Aligned_cols=28 Identities=32% Similarity=0.689 Sum_probs=18.5
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhcccccc
Q 033025 85 EWRRVDIILIVTLVALILVYLIGCCAFRND 114 (129)
Q Consensus 85 ~W~~~ai~niv~lv~Li~vy~vgCcafrn~ 114 (129)
+|.++.|+-|++++++ +++|+|||....
T Consensus 682 ~w~~v~i~gi~~i~~m--~~fik~~aVht~ 709 (764)
T KOG3658|consen 682 NWLAVNIVGIVLIVLM--AFFIKICAVHTP 709 (764)
T ss_pred hhHHhHhHHHHHHHHH--HHhhhheEEecc
Confidence 5666666555555444 678999998764
No 25
>PTZ00370 STEVOR; Provisional
Probab=40.85 E-value=28 Score=30.12 Aligned_cols=24 Identities=21% Similarity=0.456 Sum_probs=19.7
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHH
Q 033025 83 KKEWRRVDIILIVTLVALILVYLI 106 (129)
Q Consensus 83 k~~W~~~ai~niv~lv~Li~vy~v 106 (129)
=--|..+|+|.+++.|+|||.|.=
T Consensus 254 F~Pygiaalvllil~vvliilYiw 277 (296)
T PTZ00370 254 FYPYGIAALVLLILAVVLIILYIW 277 (296)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999974
No 26
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=38.35 E-value=10 Score=32.30 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhccccccc
Q 033025 85 EWRRVDIILIVTLVALILVYLIGCCAFRNDK 115 (129)
Q Consensus 85 ~W~~~ai~niv~lv~Li~vy~vgCcafrn~r 115 (129)
+|-...|.-||++++|+|.-+|+|+-+|..|
T Consensus 144 ~yL~T~IpaVVI~~iLLIA~iIa~icyrrkR 174 (290)
T PF05454_consen 144 DYLHTFIPAVVIAAILLIAGIIACICYRRKR 174 (290)
T ss_dssp -------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4555566777777888888888988888644
No 27
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=37.62 E-value=50 Score=27.11 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=18.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhcccc
Q 033025 85 EWRRVDIILIVTLVALILVYLIGCCAFR 112 (129)
Q Consensus 85 ~W~~~ai~niv~lv~Li~vy~vgCcafr 112 (129)
.-|.-.|+||++.|.+|+|-+++--.|-
T Consensus 9 rRK~N~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 9 RRKTNKILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhee
Confidence 3455577888877777766666666665
No 28
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=36.22 E-value=42 Score=24.05 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=6.7
Q ss_pred HhHHHHHHHHHHHHHH
Q 033025 88 RVDIILIVTLVALILV 103 (129)
Q Consensus 88 ~~ai~niv~lv~Li~v 103 (129)
|..++..++|++|++|
T Consensus 4 K~~llL~l~LA~lLli 19 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLI 19 (95)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 29
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=35.93 E-value=85 Score=19.21 Aligned_cols=28 Identities=14% Similarity=0.457 Sum_probs=14.0
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHh
Q 033025 78 LLANLKKEWRRVDIILIVTLVALILVYLIG 107 (129)
Q Consensus 78 vl~~lk~~W~~~ai~niv~lv~Li~vy~vg 107 (129)
++..++++ +++++-.+++++++++=.+|
T Consensus 8 ~~~~f~~n--k~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 8 AWRRFRRN--KLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred HHHHHHhC--chHHHHHHHHHHHHHHHHHH
Confidence 45555554 34555555555554444443
No 30
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=35.09 E-value=29 Score=26.76 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=16.0
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHH
Q 033025 81 NLKKEWRRVDIILIVTLVALILV 103 (129)
Q Consensus 81 ~lk~~W~~~ai~niv~lv~Li~v 103 (129)
.+..+||.++|+-++++++++.+
T Consensus 41 r~~tKyRDL~II~~L~ll~l~gi 63 (149)
T PF11694_consen 41 RLDTKYRDLSIIALLLLLLLIGI 63 (149)
T ss_pred cCcchhhhHHHHHHHHHHHHHHH
Confidence 34567888888877777666543
No 31
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=34.68 E-value=54 Score=22.60 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=10.4
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHH
Q 033025 83 KKEWRRVDIILIVTLVALILVYLI 106 (129)
Q Consensus 83 k~~W~~~ai~niv~lv~Li~vy~v 106 (129)
|.-|+.+.|.-+++|+++++.++.
T Consensus 11 k~~l~~~~isi~~~lvi~~i~~~~ 34 (96)
T PF13800_consen 11 KSRLRTVVISIISALVIFIISFII 34 (96)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHh
Confidence 344554444444444444433433
No 32
>TIGR02459 CbtB cobalt transporter subunit CbtB (proposed). This model represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems. Evidence for this assignment includes 1) prediction of a single trans-membrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional trans-membrane segments.
Probab=34.26 E-value=57 Score=22.09 Aligned_cols=17 Identities=41% Similarity=0.888 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhc
Q 033025 93 LIVTLVALILVYLIGCC 109 (129)
Q Consensus 93 niv~lv~Li~vy~vgCc 109 (129)
-...++.|+++|++|-.
T Consensus 23 ~~a~~lgl~~ly~vG~~ 39 (60)
T TIGR02459 23 LVAALLGLFLVYFVGFS 39 (60)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 34456678889999863
No 33
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=34.00 E-value=25 Score=29.00 Aligned_cols=31 Identities=26% Similarity=0.590 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHh-hccccccchhhhh
Q 033025 90 DIILIVTLVALILVYLIG-CCAFRNDKTEDLF 120 (129)
Q Consensus 90 ai~niv~lv~Li~vy~vg-Ccafrn~rr~~~~ 120 (129)
.|-.|++|+.||-..++= |||...+||.++.
T Consensus 105 TvSlImViaAliTtlvlK~C~~~s~~~r~~s~ 136 (205)
T PF15298_consen 105 TVSLIMVIAALITTLVLKNCCAQSQNRRRNSH 136 (205)
T ss_pred eeehhHHHHHhhhhhhhhhhhhhhcccCCCcc
Confidence 444556666655333332 9998888887765
No 34
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=34.00 E-value=38 Score=27.30 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=18.1
Q ss_pred HhHHHHHHHHHHHHHHHHHhhccccc
Q 033025 88 RVDIILIVTLVALILVYLIGCCAFRN 113 (129)
Q Consensus 88 ~~ai~niv~lv~Li~vy~vgCcafrn 113 (129)
-.-+++|+++++.|+|.+.-|...+.
T Consensus 32 ~tILiaIvVliiiiivli~lcssRKk 57 (189)
T PF05568_consen 32 YTILIAIVVLIIIIIVLIYLCSSRKK 57 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34567788888888887777765443
No 35
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.90 E-value=29 Score=29.67 Aligned_cols=32 Identities=19% Similarity=0.550 Sum_probs=20.0
Q ss_pred hhhHHHHHHhhhhHhHHHHHHHHHHHHHHHHH
Q 033025 75 KAGLLANLKKEWRRVDIILIVTLVALILVYLI 106 (129)
Q Consensus 75 KAGvl~~lk~~W~~~ai~niv~lv~Li~vy~v 106 (129)
||-..+.--+.|+.+.|+-+++++++++++.+
T Consensus 259 kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~ 290 (297)
T KOG0810|consen 259 KAVKYQKKARKWKIIIIIILIIIIVVLVVVIV 290 (297)
T ss_pred HHHHHHHHhhhceeeeehHHHHHHHHHhhhhc
Confidence 34455555567877777766666666665554
No 36
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=32.47 E-value=67 Score=23.78 Aligned_cols=21 Identities=10% Similarity=0.528 Sum_probs=14.4
Q ss_pred HHHhhhhHhHHHHHHHHHHHH
Q 033025 81 NLKKEWRRVDIILIVTLVALI 101 (129)
Q Consensus 81 ~lk~~W~~~ai~niv~lv~Li 101 (129)
.+|..||.+++.-.++++.++
T Consensus 36 ~~k~pwK~I~la~~Lli~G~~ 56 (115)
T PF05915_consen 36 KVKIPWKSIALAVFLLIFGTV 56 (115)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 568899987776666554444
No 37
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=31.51 E-value=37 Score=24.20 Aligned_cols=7 Identities=43% Similarity=1.189 Sum_probs=3.5
Q ss_pred hhccccc
Q 033025 107 GCCAFRN 113 (129)
Q Consensus 107 gCcafrn 113 (129)
+||-+=|
T Consensus 42 ~cc~~~n 48 (82)
T PF02723_consen 42 QCCRLCN 48 (82)
T ss_pred HHhhhhc
Confidence 4555544
No 38
>PF07673 DUF1602: Protein of unknown function (DUF1602); InterPro: IPR011633 These proteins have no known function.
Probab=31.32 E-value=14 Score=22.89 Aligned_cols=13 Identities=31% Similarity=1.076 Sum_probs=10.5
Q ss_pred ccCccccCCCCCC
Q 033025 23 PLQSGCCKPPTEC 35 (129)
Q Consensus 23 PiqSGCCKPP~~C 35 (129)
.|.+-||+||.++
T Consensus 16 A~atrC~~PPds~ 28 (39)
T PF07673_consen 16 AIATRCCSPPDSS 28 (39)
T ss_pred HHHHHhcCCCccc
Confidence 4678899999874
No 39
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=31.21 E-value=52 Score=23.13 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccchhhhh
Q 033025 89 VDIILIVTLVALILVYLIGCCAFRNDKTEDLF 120 (129)
Q Consensus 89 ~ai~niv~lv~Li~vy~vgCcafrn~rr~~~~ 120 (129)
.+-.-++++|+||++|+. |-+|.|+.|
T Consensus 51 aaQGsi~~fviLi~~Ya~-----~mnrlD~~~ 77 (81)
T PF13937_consen 51 AAQGSIIVFVILIFVYAW-----RMNRLDRKY 77 (81)
T ss_pred HHHhHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 455667777888888765 556665544
No 40
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=31.02 E-value=42 Score=23.93 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=16.8
Q ss_pred HhhhhHhHHHHHHHHHHHHHHHHHhhccc
Q 033025 83 KKEWRRVDIILIVTLVALILVYLIGCCAF 111 (129)
Q Consensus 83 k~~W~~~ai~niv~lv~Li~vy~vgCcaf 111 (129)
+..+..+.|.-+.++++||++|+|=--.+
T Consensus 58 ~~~~~iili~lls~v~IlVily~IyYFVI 86 (101)
T PF06024_consen 58 QNNGNIILISLLSFVCILVILYAIYYFVI 86 (101)
T ss_pred cccccchHHHHHHHHHHHHHHhhheEEEE
Confidence 34555555666666666777776644333
No 41
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=30.61 E-value=71 Score=22.12 Aligned_cols=20 Identities=20% Similarity=0.482 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 033025 89 VDIILIVTLVALILVYLIGC 108 (129)
Q Consensus 89 ~ai~niv~lv~Li~vy~vgC 108 (129)
++++.+..+++|+..|.||=
T Consensus 31 Aav~~~~~~~~l~~~~~iG~ 50 (67)
T PF11511_consen 31 AAVFFLGLWFLLVALYFIGL 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888884
No 42
>PLN02518 pheophorbide a oxygenase
Probab=30.34 E-value=60 Score=29.86 Aligned_cols=18 Identities=33% Similarity=0.802 Sum_probs=10.9
Q ss_pred cCccchhhHHHHHHhhhhHh
Q 033025 70 NCDSCKAGLLANLKKEWRRV 89 (129)
Q Consensus 70 ~C~SCKAGvl~~lk~~W~~~ 89 (129)
.|.||++.+ .+|+ .++++
T Consensus 466 ~C~SC~~Al-k~i~-~~~~~ 483 (539)
T PLN02518 466 NCSSCKGAY-KAFQ-TLQKV 483 (539)
T ss_pred cChhHHHHH-HHHH-HHHHH
Confidence 689998864 4444 34443
No 43
>PRK11653 hypothetical protein; Provisional
Probab=29.30 E-value=59 Score=27.00 Aligned_cols=31 Identities=29% Similarity=0.545 Sum_probs=19.3
Q ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHHHHHhhc
Q 033025 78 LLANLKKEWRRVDIILIVTLVALILVYLIGCC 109 (129)
Q Consensus 78 vl~~lk~~W~~~ai~niv~lv~Li~vy~vgCc 109 (129)
-++.+||.||...+..+++.+..+ +.+.||-
T Consensus 8 ~~~~~rK~~rs~~la~vala~~a~-f~LagC~ 38 (225)
T PRK11653 8 NHASFRKNWRSRHLAPVALAVAAV-FMLAGCE 38 (225)
T ss_pred CHHHHHhhhccchhHHHHHHHHHH-HHHhccC
Confidence 467899999876666654444433 3444574
No 44
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=29.20 E-value=83 Score=22.49 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=17.3
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHHH
Q 033025 79 LANLKKEWRRVDIILIVTLVALILVY 104 (129)
Q Consensus 79 l~~lk~~W~~~ai~niv~lv~Li~vy 104 (129)
|..||++=++-..+-+++++++.+||
T Consensus 59 L~~LrkENrK~~~ls~~l~~v~~LvY 84 (85)
T PF15188_consen 59 LKLLRKENRKSMLLSVALFFVCFLVY 84 (85)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHc
Confidence 56677776666666666666666666
No 45
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=28.17 E-value=38 Score=28.05 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHHHHHHHhhccccccch
Q 033025 88 RVDIILIVTLVALILVYLIGCCAFRNDKT 116 (129)
Q Consensus 88 ~~ai~niv~lv~Li~vy~vgCcafrn~rr 116 (129)
.+-|+--++|++||++=+|++...|..++
T Consensus 272 ~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 272 LVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 34444444555555555666665565333
No 46
>COG5605 Predicted small integral membrane protein [Function unknown]
Probab=28.00 E-value=1.2e+02 Score=22.65 Aligned_cols=23 Identities=30% Similarity=0.730 Sum_probs=16.7
Q ss_pred hhhHHH--HHHhhhhHhHHHHHHHH
Q 033025 75 KAGLLA--NLKKEWRRVDIILIVTL 97 (129)
Q Consensus 75 KAGvl~--~lk~~W~~~ai~niv~l 97 (129)
|||++- -+.-.|.+++.+-.+++
T Consensus 60 kaglivavfmhmawerlal~yaiil 84 (115)
T COG5605 60 KAGLIVAVFMHMAWERLALVYAIIL 84 (115)
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHh
Confidence 777665 35678999998876654
No 47
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=27.67 E-value=63 Score=18.66 Aligned_cols=7 Identities=14% Similarity=0.596 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 033025 96 TLVALIL 102 (129)
Q Consensus 96 ~lv~Li~ 102 (129)
++++|||
T Consensus 14 LFILLII 20 (26)
T TIGR01732 14 LFILLVI 20 (26)
T ss_pred HHHHHHH
Confidence 3344443
No 48
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.24 E-value=78 Score=23.85 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 033025 89 VDIILIVTLVALILVYLI 106 (129)
Q Consensus 89 ~ai~niv~lv~Li~vy~v 106 (129)
+.++--|++++|+|.|++
T Consensus 71 ~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455556666666
No 49
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=27.15 E-value=1.1e+02 Score=23.40 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=26.1
Q ss_pred hhHHHHHHhhh--hHhHHHHHHHHHHHHHHHHHhhccccc
Q 033025 76 AGLLANLKKEW--RRVDIILIVTLVALILVYLIGCCAFRN 113 (129)
Q Consensus 76 AGvl~~lk~~W--~~~ai~niv~lv~Li~vy~vgCcafrn 113 (129)
.++++.+|+.+ ..+.+.-++.++..++++.++-..|+=
T Consensus 73 ~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 112 (154)
T TIGR01625 73 PGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRI 112 (154)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36889999975 666666666666666677776655554
No 50
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=27.04 E-value=81 Score=25.17 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=27.2
Q ss_pred hhHHHHHHhh----------hhHhHHHHHHHHHHHHHHHHHhhccccc
Q 033025 76 AGLLANLKKE----------WRRVDIILIVTLVALILVYLIGCCAFRN 113 (129)
Q Consensus 76 AGvl~~lk~~----------W~~~ai~niv~lv~Li~vy~vgCcafrn 113 (129)
|++++.+||+ -|.++|+-|++|++|+++.++-+..-+.
T Consensus 16 ~~y~as~~r~k~~~R~i~l~~Ri~~~iSIisL~~l~v~LaL~l~~Ck~ 63 (161)
T PHA02673 16 ANYVASVKRQKAIRRYIKLFFRLMAAIAIIVLAILVVILALALDDCRN 63 (161)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4556655554 4667888999999999999888754443
No 51
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=26.91 E-value=32 Score=28.53 Aligned_cols=22 Identities=23% Similarity=0.786 Sum_probs=11.6
Q ss_pred HHHHhhccccccchhhhhhccccCCC
Q 033025 103 VYLIGCCAFRNDKTEDLFRKYKQGTY 128 (129)
Q Consensus 103 vy~vgCcafrn~rr~~~~~~~~~~~~ 128 (129)
++.+|=|+.|..-+ =+|+.|+|
T Consensus 191 i~~i~i~~irR~i~----lky~Yg~~ 212 (215)
T PHA02947 191 IFVIAICSIKRKIN----LKYRYGSF 212 (215)
T ss_pred HHHHHHHHHHHHhe----eeEeeeeE
Confidence 33444455554333 15777876
No 52
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=26.42 E-value=64 Score=24.01 Aligned_cols=34 Identities=9% Similarity=0.341 Sum_probs=23.4
Q ss_pred hhhhHhH-HHHHHHHHHHHHHHHHhhccccccchh
Q 033025 84 KEWRRVD-IILIVTLVALILVYLIGCCAFRNDKTE 117 (129)
Q Consensus 84 ~~W~~~a-i~niv~lv~Li~vy~vgCcafrn~rr~ 117 (129)
+.|.-+. +|-.++++.|+|+.++=|-..|+.+..
T Consensus 15 ~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~S 49 (102)
T PF15176_consen 15 RSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLAS 49 (102)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 5677654 444445566778888889888887653
No 53
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=26.41 E-value=1.3e+02 Score=23.99 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=14.3
Q ss_pred hhHHHHHHhhhhHhHHHHHHHHHH
Q 033025 76 AGLLANLKKEWRRVDIILIVTLVA 99 (129)
Q Consensus 76 AGvl~~lk~~W~~~ai~niv~lv~ 99 (129)
-|-+..-++.|+.++++-+++.++
T Consensus 31 ~~~~~~~~~~w~~va~~~l~i~~~ 54 (228)
T PRK13872 31 IGSARVQARNWRLMAFGCLALSAG 54 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566899777665554443
No 54
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=26.37 E-value=1e+02 Score=18.64 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=14.6
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 033025 88 RVDIILIVTLVALILVYLI 106 (129)
Q Consensus 88 ~~ai~niv~lv~Li~vy~v 106 (129)
.++++.-++.++||++|..
T Consensus 9 ~lan~lG~~~~~LIVlYH~ 27 (35)
T PF10215_consen 9 TLANFLGVAAMVLIVLYHF 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777788888888875
No 55
>PHA02955 hypothetical protein; Provisional
Probab=25.53 E-value=45 Score=27.63 Aligned_cols=7 Identities=57% Similarity=1.027 Sum_probs=5.4
Q ss_pred ccccCCC
Q 033025 122 KYKQGTY 128 (129)
Q Consensus 122 ~~~~~~~ 128 (129)
||+.|+|
T Consensus 206 ky~y~~~ 212 (213)
T PHA02955 206 KYIYGVY 212 (213)
T ss_pred eEeeecc
Confidence 5788887
No 56
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=25.53 E-value=96 Score=21.37 Aligned_cols=11 Identities=36% Similarity=1.005 Sum_probs=7.6
Q ss_pred HHhhhhHhHHH
Q 033025 82 LKKEWRRVDII 92 (129)
Q Consensus 82 lk~~W~~~ai~ 92 (129)
++.+|+.+|.+
T Consensus 206 ~~~ew~~~A~v 216 (237)
T PF02932_consen 206 IKEEWKFVAMV 216 (237)
T ss_dssp HHHHHHSTSHH
T ss_pred ccccccccHHH
Confidence 56679887654
No 57
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.62 E-value=67 Score=28.05 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=18.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHH
Q 033025 84 KEWRRVDIILIVTLVALILVYLI 106 (129)
Q Consensus 84 ~~W~~~ai~niv~lv~Li~vy~v 106 (129)
+.|--+-||-|++++|||+|++.
T Consensus 288 NRwLmvkiF~i~ivFflvfvlf~ 310 (311)
T KOG0812|consen 288 NRWLMVKIFGILIVFFLVFVLFL 310 (311)
T ss_pred chHHHHHHHHHHHHHHHHHHHhc
Confidence 45777788888888888888764
No 58
>PF09489 CbtB: Probable cobalt transporter subunit (CbtB); InterPro: IPR012667 This entry represents a family of proteins which have been proposed to act as cobalt transporters acting in concert with vitamin B12 biosynthesis systems []. Evidence for this assignment includes 1) prediction of a single transmembrane segment and a C-terminal histidine-rich motif likely to be a metal-binding site, 2) positional gene linkage with known B12 biosynthesis genes, 3) upstream proximity of B12 transcriptional regulatory sites, 4) the absence of other known cobalt import systems and 5) the obligate co-localization with a protein (CbtA) predicted to have five additional transmembrane segments.
Probab=23.52 E-value=1.4e+02 Score=19.61 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=17.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhc
Q 033025 85 EWRRVDIILIVTLVALILVYLIGCC 109 (129)
Q Consensus 85 ~W~~~ai~niv~lv~Li~vy~vgCc 109 (129)
.+.++..+-+.+++.+.++|.+|-.
T Consensus 9 ~~~~~~~~~~a~~lg~~l~~~~gf~ 33 (54)
T PF09489_consen 9 SASRLVQAAAAALLGLLLLYFVGFS 33 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666777778889999853
No 59
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=23.48 E-value=1e+02 Score=25.58 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccchh
Q 033025 89 VDIILIVTLVALILVYLIGCCAFRNDKTE 117 (129)
Q Consensus 89 ~ai~niv~lv~Li~vy~vgCcafrn~rr~ 117 (129)
--+|.|++-+.|+++.+|..-|+-=.||.
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEecc
Confidence 67777777777777777777777776663
No 60
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=23.46 E-value=78 Score=24.98 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhhhhhccc
Q 033025 91 IILIVTLVALILVYLIGCCAFRNDKTEDLFRKYK 124 (129)
Q Consensus 91 i~niv~lv~Li~vy~vgCcafrn~rr~~~~~~~~ 124 (129)
+|.+.+.+++|+.+++ -+||..|+...-|+|.
T Consensus 99 ~Vl~g~s~l~i~yfvi--r~~R~r~~~rktRkYg 130 (163)
T PF06679_consen 99 YVLVGLSALAILYFVI--RTFRLRRRNRKTRKYG 130 (163)
T ss_pred HHHHHHHHHHHHHHHH--HHHhhccccccceeec
Confidence 3433333333333344 3566655433335665
No 61
>PRK14756 hypothetical protein; Provisional
Probab=23.07 E-value=1.3e+02 Score=17.76 Aligned_cols=19 Identities=11% Similarity=0.371 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 033025 88 RVDIILIVTLVALILVYLI 106 (129)
Q Consensus 88 ~~ai~niv~lv~Li~vy~v 106 (129)
|.+.+..++.+.+|++++.
T Consensus 6 K~SL~tTvvaL~~Iva~~~ 24 (29)
T PRK14756 6 KFSLVTTIIVLGLIVAVGL 24 (29)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4567777777777777654
No 62
>PF13129 DUF3953: Protein of unknown function (DUF3953)
Probab=22.97 E-value=34 Score=21.16 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=19.4
Q ss_pred HHHHHhhhhHhHHHHHHHHHHHHHH
Q 033025 79 LANLKKEWRRVDIILIVTLVALILV 103 (129)
Q Consensus 79 l~~lk~~W~~~ai~niv~lv~Li~v 103 (129)
++++|++=+..+++.+++-+|+++|
T Consensus 14 i~e~kk~~k~~g~~~f~~~~f~~~V 38 (42)
T PF13129_consen 14 IEEIKKERKSSGILSFLVGAFILFV 38 (42)
T ss_pred HHHHHhcccceehHHHHHHHHheEE
Confidence 4678888888888888888777654
No 63
>PRK14762 membrane protein; Provisional
Probab=22.94 E-value=1.2e+02 Score=17.57 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 033025 91 IILIVTLVALILVY 104 (129)
Q Consensus 91 i~niv~lv~Li~vy 104 (129)
++.|++++.|..|.
T Consensus 7 ~i~iifligllvvt 20 (27)
T PRK14762 7 AVLIIFLIGLLVVT 20 (27)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555544
No 64
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=22.88 E-value=1.4e+02 Score=17.69 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccc
Q 033025 89 VDIILIVTLVALILVYLIGCCAFRND 114 (129)
Q Consensus 89 ~ai~niv~lv~Li~vy~vgCcafrn~ 114 (129)
++++--++||+|.+.|.+ .|.-|+
T Consensus 3 ~~vi~g~llv~lLl~YLv--YAL~na 26 (29)
T PRK14750 3 FSIVCGALLVLLLLGYLV--YALFNA 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHcCc
Confidence 345555666777777765 555554
No 65
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=22.72 E-value=43 Score=29.53 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=14.0
Q ss_pred cchhhHHHHHHhhhhH
Q 033025 73 SCKAGLLANLKKEWRR 88 (129)
Q Consensus 73 SCKAGvl~~lk~~W~~ 88 (129)
|||+|+|+.++++-..
T Consensus 272 ScK~~fLd~~k~~~gi 287 (342)
T KOG1747|consen 272 SCKSGFLDSLKNDLGI 287 (342)
T ss_pred hcchhHHHHHHHhcCe
Confidence 7999999999988753
No 66
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=22.69 E-value=91 Score=23.15 Aligned_cols=22 Identities=14% Similarity=0.564 Sum_probs=14.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHH
Q 033025 84 KEWRRVDIILIVTLVALILVYLI 106 (129)
Q Consensus 84 ~~W~~~ai~niv~lv~Li~vy~v 106 (129)
+.||+++++ +|++..++-+|.+
T Consensus 42 ~~WkklS~~-~v~~c~~lnaY~l 63 (102)
T PLN02595 42 AKWEKITYL-GIASCTALAVYVL 63 (102)
T ss_pred hhhhhhhHH-HhHHHHHHHHHHh
Confidence 489999998 3444444456654
No 67
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=22.51 E-value=77 Score=22.81 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=3.7
Q ss_pred HHHhhhh
Q 033025 81 NLKKEWR 87 (129)
Q Consensus 81 ~lk~~W~ 87 (129)
...+.|.
T Consensus 17 ~~~~~w~ 23 (102)
T PF11669_consen 17 YYYELWY 23 (102)
T ss_pred hhHHHHH
Confidence 3455665
No 68
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=22.42 E-value=1.4e+02 Score=26.61 Aligned_cols=10 Identities=50% Similarity=1.401 Sum_probs=8.8
Q ss_pred CcceecCccc
Q 033025 65 MQLCYNCDSC 74 (129)
Q Consensus 65 ~~LCy~C~SC 74 (129)
-.||++|+-|
T Consensus 47 a~lChnC~~C 56 (372)
T TIGR02484 47 AHLCHDCQSC 56 (372)
T ss_pred HHHCcCcccc
Confidence 4699999999
No 69
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=22.38 E-value=1.5e+02 Score=25.25 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=20.7
Q ss_pred hHHHHHHhhhhHhHHHHHHHHHH-HHHHHHHh
Q 033025 77 GLLANLKKEWRRVDIILIVTLVA-LILVYLIG 107 (129)
Q Consensus 77 Gvl~~lk~~W~~~ai~niv~lv~-Li~vy~vg 107 (129)
++.+.++++|.-+.-+-+++.++ ||+.+..|
T Consensus 31 ~~~~~~~~~W~~I~si~~lL~~IpLIly~ifG 62 (267)
T PF07672_consen 31 SVVIALTNNWQWILSIFILLIFIPLILYIIFG 62 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999887666665544 44444444
No 70
>TIGR03647 Na_symport_sm probable solute:sodium symporter small subunit. Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments.
Probab=22.33 E-value=96 Score=21.58 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccccchhhh
Q 033025 89 VDIILIVTLVALILVYLIGCCAFRNDKTEDL 119 (129)
Q Consensus 89 ~ai~niv~lv~Li~vy~vgCcafrn~rr~~~ 119 (129)
++-.-++++++||++|.. +-+|.|+.
T Consensus 47 aaQGsi~~fviLi~~Ya~-----~m~rlD~~ 72 (77)
T TIGR03647 47 AQQGSIYVFVVLIFVYAW-----RMNRLDRK 72 (77)
T ss_pred HHhhHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 345567777888888865 55565543
No 71
>KOG3909 consensus Queuine-tRNA ribosyltransferase [RNA processing and modification]
Probab=22.33 E-value=1.1e+02 Score=27.71 Aligned_cols=28 Identities=25% Similarity=0.563 Sum_probs=19.9
Q ss_pred ceecCccchhhHHHHHHhhhhHhHHHHH
Q 033025 67 LCYNCDSCKAGLLANLKKEWRRVDIILI 94 (129)
Q Consensus 67 LCy~C~SCKAGvl~~lk~~W~~~ai~ni 94 (129)
-||-|.-=+.+.|++|=+.-.-+|.|.+
T Consensus 322 ~CytC~kytRaYlhHLl~TrELLa~ILL 349 (414)
T KOG3909|consen 322 VCYTCRKYTRAYLHHLLQTRELLAWILL 349 (414)
T ss_pred ceehhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4777887788999988776665555443
No 72
>PHA03283 envelope glycoprotein E; Provisional
Probab=22.01 E-value=82 Score=29.46 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=24.1
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHhhccc-cccch
Q 033025 84 KEWRRVDIILIVTLVALILVYLIGCCAF-RNDKT 116 (129)
Q Consensus 84 ~~W~~~ai~niv~lv~Li~vy~vgCcaf-rn~rr 116 (129)
+.|.++.++-+.++.++++..++.+|+. |..+|
T Consensus 397 ~~~l~~~~~~~~~~~~~~~~l~vw~c~~~r~~~~ 430 (542)
T PHA03283 397 RHYLAFLLAIICTCAALLVALVVWGCILYRRSNR 430 (542)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhheeeehhhcC
Confidence 5677777777777777788888888887 55444
No 73
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.81 E-value=1.2e+02 Score=22.98 Aligned_cols=6 Identities=17% Similarity=1.121 Sum_probs=2.6
Q ss_pred hhHhHH
Q 033025 86 WRRVDI 91 (129)
Q Consensus 86 W~~~ai 91 (129)
|+.+-.
T Consensus 89 Wkn~Km 94 (116)
T KOG0860|consen 89 WKNCKM 94 (116)
T ss_pred HHHHHH
Confidence 444433
No 74
>PF14857 TMEM151: TMEM151 family
Probab=21.62 E-value=86 Score=28.48 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 033025 90 DIILIVTLVALILVYLIGCCAFR 112 (129)
Q Consensus 90 ai~niv~lv~Li~vy~vgCcafr 112 (129)
..|.++++++|.+||.+.|.-.+
T Consensus 68 iyIplaf~~mlYviYlvECwhs~ 90 (425)
T PF14857_consen 68 IYIPLAFLIMLYVIYLVECWHSS 90 (425)
T ss_pred hhHHHHHHHHHHHHHHHHHhcch
Confidence 46889999999999999996543
No 75
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=21.04 E-value=1.9e+02 Score=23.41 Aligned_cols=10 Identities=50% Similarity=0.897 Sum_probs=4.3
Q ss_pred hHHHHHHhhh
Q 033025 77 GLLANLKKEW 86 (129)
Q Consensus 77 Gvl~~lk~~W 86 (129)
|++..|.+-|
T Consensus 9 ~~~~~~~~~~ 18 (200)
T PRK10617 9 GLIKRLWKWW 18 (200)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 76
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=20.99 E-value=33 Score=26.48 Aligned_cols=32 Identities=22% Similarity=0.093 Sum_probs=16.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHhhccccccch
Q 033025 85 EWRRVDIILIVTLVALILVYLIGCCAFRNDKT 116 (129)
Q Consensus 85 ~W~~~ai~niv~lv~Li~vy~vgCcafrn~rr 116 (129)
.|..++|..=+++++++++-.+-+..-|+.||
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~~R~~Rr 187 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFWNRKKRR 187 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhheeecccee
Confidence 67777775544444444443344444454444
No 77
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=20.95 E-value=32 Score=25.39 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=0.0
Q ss_pred HHhhhhHhHHHHHHHHHHHHHHHHH
Q 033025 82 LKKEWRRVDIILIVTLVALILVYLI 106 (129)
Q Consensus 82 lk~~W~~~ai~niv~lv~Li~vy~v 106 (129)
+++..+++.++-++++++.++++.+
T Consensus 1 ~~~~~~rl~~~~~~~~~i~~~~~l~ 25 (131)
T PF03100_consen 1 MKRRKKRLILVVLGLVIIAAAIYLI 25 (131)
T ss_dssp -------------------------
T ss_pred CCcceeehhhHHHHHHHHHHHHHHH
Confidence 3556666665555544444444443
No 78
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.90 E-value=1.3e+02 Score=22.84 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=10.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHHH
Q 033025 85 EWRRVDIILIVTLVALILVYLI 106 (129)
Q Consensus 85 ~W~~~ai~niv~lv~Li~vy~v 106 (129)
+++...++-++++++.|++|+.
T Consensus 93 Km~~il~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 93 KMRIILGLVIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3454444444444555555543
No 79
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.24 E-value=1.2e+02 Score=18.80 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccc
Q 033025 89 VDIILIVTLVALILVYLIGCCAFRN 113 (129)
Q Consensus 89 ~ai~niv~lv~Li~vy~vgCcafrn 113 (129)
++|+-.|+..+.+++..+=|.|++-
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcy 30 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCY 30 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455445444444444444444443
Done!