Query 033025
Match_columns 129
No_of_seqs 104 out of 165
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 14:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r9i_A MU-conotoxin PIIIA; cys 78.8 0.64 2.2E-05 26.0 0.8 12 25-36 1-12 (26)
2 2kmz_A Tumor necrosis factor r 64.7 2.5 8.4E-05 27.1 1.2 19 58-77 13-31 (53)
3 2kog_A Vesicle-associated memb 58.0 10 0.00035 27.0 3.7 16 86-101 93-108 (119)
4 2kog_A Vesicle-associated memb 57.1 8.6 0.00029 27.4 3.1 25 84-108 94-118 (119)
5 2eqp_A Tumor necrosis factor r 56.8 2.1 7.1E-05 27.1 -0.2 19 58-77 20-38 (50)
6 3hd7_A Vesicle-associated memb 50.3 22 0.00075 24.0 4.1 13 86-98 65-77 (91)
7 3s8f_B Cytochrome C oxidase su 34.2 40 0.0014 25.2 3.7 31 77-107 9-39 (168)
8 2kn0_A FN14; tweak, TNF recept 31.6 15 0.0005 24.4 0.8 19 58-77 9-27 (66)
9 1gib_A MU-conotoxin GIIIB; neu 30.5 18 0.00062 19.9 0.9 9 28-36 3-11 (26)
10 2dw3_A Intrinsic membrane prot 29.4 47 0.0016 22.6 3.1 20 89-108 33-52 (77)
11 3lb6_C IL-13, interleukin-13 r 27.7 13 0.00043 29.7 0.0 26 91-116 342-367 (380)
12 2bg9_C Acetylcholine receptor 24.1 47 0.0016 26.8 2.8 29 80-108 325-354 (369)
13 1p7b_A Integral membrane chann 21.8 77 0.0026 25.9 3.6 30 80-109 54-83 (333)
14 2lat_A Dolichyl-diphosphooligo 21.0 95 0.0033 18.3 3.0 19 88-106 9-27 (37)
15 2nrg_A Intrinsic membrane prot 20.8 84 0.0029 21.6 3.1 20 89-108 34-53 (82)
No 1
>1r9i_A MU-conotoxin PIIIA; cysteine knot; HET: PCA HYP CY3; NMR {Conus purpurascens} SCOP: j.30.1.1
Probab=78.79 E-value=0.64 Score=25.96 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=9.8
Q ss_pred CccccCCCCCCC
Q 033025 25 QSGCCKPPTECG 36 (129)
Q Consensus 25 qSGCCKPP~~Cg 36 (129)
|-+||+||-+|.
T Consensus 1 er~CC~~Pk~Ck 12 (26)
T 1r9i_A 1 ERLCCGFPKSCR 12 (26)
T ss_dssp CCTTTTSTTGGG
T ss_pred CCcccCCCCccc
Confidence 468999998884
No 2
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=64.66 E-value=2.5 Score=27.08 Aligned_cols=19 Identities=37% Similarity=0.927 Sum_probs=16.7
Q ss_pred ccccCccCcceecCccchhh
Q 033025 58 LQWGNDQMQLCYNCDSCKAG 77 (129)
Q Consensus 58 ~~WsNd~~~LCy~C~SCKAG 77 (129)
..||-|-. .|-+|.||++.
T Consensus 13 sswS~DLd-KCmdcs~C~~~ 31 (53)
T 2kmz_A 13 SSWSADLD-KCMDCASCRAR 31 (53)
T ss_dssp CBCCTTTT-CCBCSTTCSSC
T ss_pred cccchhhh-hhhccccCCCC
Confidence 57999876 99999999985
No 3
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=58.04 E-value=10 Score=27.02 Aligned_cols=16 Identities=19% Similarity=0.837 Sum_probs=7.7
Q ss_pred hhHhHHHHHHHHHHHH
Q 033025 86 WRRVDIILIVTLVALI 101 (129)
Q Consensus 86 W~~~ai~niv~lv~Li 101 (129)
|+++.+.-|+.+++++
T Consensus 93 wkn~K~~iii~~iv~i 108 (119)
T 2kog_A 93 WKNLKMMIILGVICAI 108 (119)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666544444333333
No 4
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=57.15 E-value=8.6 Score=27.44 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=16.4
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHhh
Q 033025 84 KEWRRVDIILIVTLVALILVYLIGC 108 (129)
Q Consensus 84 ~~W~~~ai~niv~lv~Li~vy~vgC 108 (129)
++++-..|+-++++++|+++.+..|
T Consensus 94 kn~K~~iii~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 94 KNLKMMIILGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhee
Confidence 4566666776666766666666665
No 5
>2eqp_A Tumor necrosis factor receptor superfamily member 12A; STN_TNFRSF12A_TNFR domain; NMR {Homo sapiens} PDB: 2rpj_A
Probab=56.81 E-value=2.1 Score=27.07 Aligned_cols=19 Identities=37% Similarity=0.927 Sum_probs=16.6
Q ss_pred ccccCccCcceecCccchhh
Q 033025 58 LQWGNDQMQLCYNCDSCKAG 77 (129)
Q Consensus 58 ~~WsNd~~~LCy~C~SCKAG 77 (129)
..||-|-. .|-+|.||++.
T Consensus 20 sswS~DLd-KCMdcssC~~r 38 (50)
T 2eqp_A 20 SSWSADLD-KCMDCASCRAR 38 (50)
T ss_dssp CEEETTTT-EEECHHHHHHC
T ss_pred cccchhhh-hhhccccCCCC
Confidence 57999876 99999999985
No 6
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=50.27 E-value=22 Score=23.96 Aligned_cols=13 Identities=15% Similarity=0.945 Sum_probs=5.7
Q ss_pred hhHhHHHHHHHHH
Q 033025 86 WRRVDIILIVTLV 98 (129)
Q Consensus 86 W~~~ai~niv~lv 98 (129)
|+.+-+.-|+.++
T Consensus 65 wkn~K~~iii~~i 77 (91)
T 3hd7_A 65 WKNLKMMIILGVI 77 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6644433333333
No 7
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=34.24 E-value=40 Score=25.18 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=22.9
Q ss_pred hHHHHHHhhhhHhHHHHHHHHHHHHHHHHHh
Q 033025 77 GLLANLKKEWRRVDIILIVTLVALILVYLIG 107 (129)
Q Consensus 77 Gvl~~lk~~W~~~ai~niv~lv~Li~vy~vg 107 (129)
-+++...|-|-.+++..+++++.+|++-+++
T Consensus 9 ~~~~~~e~~w~~~~~~~~~~f~~~~~~~~~~ 39 (168)
T 3s8f_B 9 KAILAYEKGWLAFSLAMLFVFIALIAYTLAT 39 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4678888999988888888777666654444
No 8
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=31.61 E-value=15 Score=24.40 Aligned_cols=19 Identities=26% Similarity=0.672 Sum_probs=15.7
Q ss_pred ccccCccCcceecCccchhh
Q 033025 58 LQWGNDQMQLCYNCDSCKAG 77 (129)
Q Consensus 58 ~~WsNd~~~LCy~C~SCKAG 77 (129)
..||-|-+ .|-+|.+|++.
T Consensus 9 ssws~dLd-kCM~Cs~C~~~ 27 (66)
T 2kn0_A 9 RAYSQDLG-KCMECSVCKNS 27 (66)
T ss_dssp EEEETTTT-EEEESTTCSSC
T ss_pred cccchhHH-hhcccCcCCCC
Confidence 46888865 99999999874
No 9
>1gib_A MU-conotoxin GIIIB; neurotoxin, sodium channel inhibitor; HET: HYP; NMR {Conus geographus} SCOP: j.30.1.1 PDB: 1tcg_A* 1tcj_A* 1tch_A* 1tck_A*
Probab=30.50 E-value=18 Score=19.95 Aligned_cols=9 Identities=56% Similarity=1.837 Sum_probs=7.3
Q ss_pred ccCCCCCCC
Q 033025 28 CCKPPTECG 36 (129)
Q Consensus 28 CCKPP~~Cg 36 (129)
||-||-+|-
T Consensus 3 cc~~p~~ck 11 (26)
T 1gib_A 3 CCTPPRKCK 11 (26)
T ss_dssp SSSSSCCCC
T ss_pred ccCCCcccc
Confidence 888888884
No 10
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=29.35 E-value=47 Score=22.59 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 033025 89 VDIILIVTLVALILVYLIGC 108 (129)
Q Consensus 89 ~ai~niv~lv~Li~vy~vgC 108 (129)
++++.++.+++|+..|.||=
T Consensus 33 AAv~f~~~~~~lv~l~~iG~ 52 (77)
T 2dw3_A 33 AGGVFFGTLLLIGFFRVVGR 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888899984
No 11
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=27.75 E-value=13 Score=29.70 Aligned_cols=26 Identities=0% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhccccccch
Q 033025 91 IILIVTLVALILVYLIGCCAFRNDKT 116 (129)
Q Consensus 91 i~niv~lv~Li~vy~vgCcafrn~rr 116 (129)
++-|+.++|++++..+++|.+...|+
T Consensus 342 ~~~~i~~~~~~~~~l~~~~~~~~k~~ 367 (380)
T 3lb6_C 342 LRFWLPFGFILILVIFVTGLLLRKPN 367 (380)
T ss_dssp --------------------------
T ss_pred EEEEhHHHHHHHHHHHHHHHHHhcch
Confidence 34445555556666667777766554
No 12
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=24.10 E-value=47 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=16.4
Q ss_pred HHHHhhhhHhHH-HHHHHHHHHHHHHHHhh
Q 033025 80 ANLKKEWRRVDI-ILIVTLVALILVYLIGC 108 (129)
Q Consensus 80 ~~lk~~W~~~ai-~niv~lv~Li~vy~vgC 108 (129)
+.++++|+.+|. +.-+++++..+++.+|.
T Consensus 325 ~~~~~~W~~~a~vlDr~~~~~f~~~~~~~~ 354 (369)
T 2bg9_C 325 DEEVGNWNLVGQTIDRLSMFIITPVMVLGT 354 (369)
T ss_dssp HHHHHHHHHCCTTHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889998763 33444444444445543
No 13
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=21.82 E-value=77 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=21.5
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHHHHHHhhc
Q 033025 80 ANLKKEWRRVDIILIVTLVALILVYLIGCC 109 (129)
Q Consensus 80 ~~lk~~W~~~ai~niv~lv~Li~vy~vgCc 109 (129)
..++..|+.+.++.+++++++++++++.-.
T Consensus 54 ~~l~~~~~~ll~~~~~~~l~~~l~fally~ 83 (333)
T 1p7b_A 54 WALKVSWPVFFASLAALFVVNNTLFALLYQ 83 (333)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999888877777777666666543
No 14
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=21.02 E-value=95 Score=18.25 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=13.8
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 033025 88 RVDIILIVTLVALILVYLI 106 (129)
Q Consensus 88 ~~ai~niv~lv~Li~vy~v 106 (129)
.++++.-+++++||+.|..
T Consensus 9 ~lan~lG~~~~~LIVlYH~ 27 (37)
T 2lat_A 9 IFANMLGVSLFLLVVLYHY 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888864
No 15
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=20.83 E-value=84 Score=21.56 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 033025 89 VDIILIVTLVALILVYLIGC 108 (129)
Q Consensus 89 ~ai~niv~lv~Li~vy~vgC 108 (129)
++++.+..+++++..|.||=
T Consensus 34 AAv~fl~~~~~lv~l~~iG~ 53 (82)
T 2nrg_A 34 AGGVFFGTLLLIGFFRVVGR 53 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46777777788888899984
Done!