Query 033025
Match_columns 129
No_of_seqs 104 out of 165
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 14:26:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033025.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033025hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oeda_ f.36.1.1 (A:) Acetylch 52.3 2.6 0.00019 29.6 1.5 30 81-110 184-217 (227)
2 d1oedc_ f.36.1.1 (C:) Acetylch 51.7 2.4 0.00017 29.9 1.2 14 80-93 216-229 (260)
3 d1m56d_ f.23.8.1 (D:) Bacteria 46.0 7.7 0.00056 22.3 2.6 15 89-103 26-40 (42)
4 d1qled_ f.23.8.1 (D:) Bacteria 44.6 6.4 0.00047 22.8 2.1 15 89-103 27-41 (43)
5 d1oede_ f.36.1.1 (E:) Acetylch 43.5 4.5 0.00033 28.6 1.6 13 79-91 215-227 (260)
6 d2dkta2 g.93.1.1 (A:82-137) RI 31.9 6.2 0.00045 23.9 0.6 22 56-77 7-29 (56)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 29.6 31 0.0023 19.0 3.4 17 90-106 12-28 (36)
8 d1v54g_ f.23.2.1 (G:) Mitochon 20.6 35 0.0026 21.7 2.8 22 84-105 14-35 (84)
9 d1p7ba2 f.14.1.1 (A:36-151) In 18.4 46 0.0033 20.7 3.0 28 81-108 20-47 (116)
10 d2h8pc1 f.14.1.1 (C:22-78) Pot 18.3 47 0.0035 19.3 2.9 17 85-101 4-20 (57)
No 1
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=52.30 E-value=2.6 Score=29.64 Aligned_cols=30 Identities=17% Similarity=0.383 Sum_probs=8.9
Q ss_pred HHHhhhhHhHHH-HH---HHHHHHHHHHHHhhcc
Q 033025 81 NLKKEWRRVDII-LI---VTLVALILVYLIGCCA 110 (129)
Q Consensus 81 ~lk~~W~~~ai~-ni---v~lv~Li~vy~vgCca 110 (129)
.++++|+.+|.+ .- ++++++++++.++.-+
T Consensus 184 ~~~~eW~~vA~viDRi~~~~F~l~~ii~~i~if~ 217 (227)
T d1oeda_ 184 NAAEEWKYVAMVIDHILLCVFMLICIIGTVSVFA 217 (227)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999853 22 2333333445555433
No 2
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=51.74 E-value=2.4 Score=29.91 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=2.1
Q ss_pred HHHHhhhhHhHHHH
Q 033025 80 ANLKKEWRRVDIIL 93 (129)
Q Consensus 80 ~~lk~~W~~~ai~n 93 (129)
+.++++|+.+|.+-
T Consensus 216 ~~~~~EWk~vA~Vi 229 (260)
T d1oedc_ 216 DEEVGNWNLVGQTI 229 (260)
T ss_dssp ----------CCSH
T ss_pred HHHHHHHHHHHHHH
Confidence 45677999987543
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=46.03 E-value=7.7 Score=22.31 Aligned_cols=15 Identities=20% Similarity=0.549 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHH
Q 033025 89 VDIILIVTLVALILV 103 (129)
Q Consensus 89 ~ai~niv~lv~Li~v 103 (129)
.+|+-|++|+||.++
T Consensus 26 ~~i~~i~~liflAi~ 40 (42)
T d1m56d_ 26 AAVVIVAALIFLALA 40 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 466666666776554
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=44.56 E-value=6.4 Score=22.78 Aligned_cols=15 Identities=47% Similarity=0.558 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHH
Q 033025 89 VDIILIVTLVALILV 103 (129)
Q Consensus 89 ~ai~niv~lv~Li~v 103 (129)
.+|+-|++|+||.++
T Consensus 27 ~~i~~i~~liflAi~ 41 (43)
T d1qled_ 27 VSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 466666777776553
No 5
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=43.46 E-value=4.5 Score=28.60 Aligned_cols=13 Identities=8% Similarity=0.271 Sum_probs=1.1
Q ss_pred HHHHHhhhhHhHH
Q 033025 79 LANLKKEWRRVDI 91 (129)
Q Consensus 79 l~~lk~~W~~~ai 91 (129)
-+.++++|+.+|.
T Consensus 215 ~~~~~~eW~~vA~ 227 (260)
T d1oede_ 215 SGSENENWVLIGK 227 (260)
T ss_dssp -----------CC
T ss_pred HHHHHHHHHHHHH
Confidence 3467788998865
No 6
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.93 E-value=6.2 Score=23.87 Aligned_cols=22 Identities=32% Similarity=0.810 Sum_probs=14.1
Q ss_pred ccccccCccCc-ceecCccchhh
Q 033025 56 DCLQWGNDQMQ-LCYNCDSCKAG 77 (129)
Q Consensus 56 DC~~WsNd~~~-LCy~C~SCKAG 77 (129)
-|..|.+|.++ -|-+|.-|+-|
T Consensus 7 iC~l~dddk~~yHC~~CgiCRvG 29 (56)
T d2dkta2 7 ICHLFDKDKRQYHCESCGICRIG 29 (56)
T ss_dssp SSCCEECSSSEEEETTTTEEEES
T ss_pred cCCcccCCCCcccCCCCCceeec
Confidence 58889887665 35555555544
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=29.60 E-value=31 Score=18.96 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033025 90 DIILIVTLVALILVYLI 106 (129)
Q Consensus 90 ai~niv~lv~Li~vy~v 106 (129)
+.|-+|=-+||++.|.-
T Consensus 12 ~LFilvPt~FLliLyvq 28 (36)
T d2axtm1 12 ALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhee
Confidence 34444555788888864
No 8
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.57 E-value=35 Score=21.68 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=15.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHH
Q 033025 84 KEWRRVDIILIVTLVALILVYL 105 (129)
Q Consensus 84 ~~W~~~ai~niv~lv~Li~vy~ 105 (129)
+-||+++++-++-.|+|..+.+
T Consensus 14 ~lWkkis~~va~P~i~l~~~n~ 35 (84)
T d1v54g_ 14 RTWRFLTFGLALPSVALCTLNS 35 (84)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999877666666555544
No 9
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=18.36 E-value=46 Score=20.72 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=17.9
Q ss_pred HHHhhhhHhHHHHHHHHHHHHHHHHHhh
Q 033025 81 NLKKEWRRVDIILIVTLVALILVYLIGC 108 (129)
Q Consensus 81 ~lk~~W~~~ai~niv~lv~Li~vy~vgC 108 (129)
-++..|+.+.++.++.++++.+++++..
T Consensus 20 ll~~~~~~~l~~~~~~~~~~~~~fa~~y 47 (116)
T d1p7ba2 20 ALKVSWPVFFASLAALFVVNNTLFALLY 47 (116)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677898887766666666555555443
No 10
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=18.30 E-value=47 Score=19.34 Aligned_cols=17 Identities=18% Similarity=0.616 Sum_probs=9.4
Q ss_pred hhhHhHHHHHHHHHHHH
Q 033025 85 EWRRVDIILIVTLVALI 101 (129)
Q Consensus 85 ~W~~~ai~niv~lv~Li 101 (129)
+||.+...-++++++++
T Consensus 4 ~~R~~~~~~~~~~i~i~ 20 (57)
T d2h8pc1 4 HWRAAGAATVLLVIVLL 20 (57)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57777665554444433
Done!