Query 033026
Match_columns 129
No_of_seqs 174 out of 1024
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0157 NadC Nicotinate-nucleo 100.0 1.1E-47 2.3E-52 307.6 15.2 125 5-129 19-145 (280)
2 PRK06543 nicotinate-nucleotide 100.0 2.9E-46 6.3E-51 300.9 16.4 125 5-129 20-146 (281)
3 PRK06106 nicotinate-nucleotide 100.0 1.2E-45 2.6E-50 297.4 16.1 124 6-129 26-151 (281)
4 PRK06978 nicotinate-nucleotide 100.0 1.3E-45 2.8E-50 298.5 16.3 124 5-129 38-163 (294)
5 PLN02716 nicotinate-nucleotide 100.0 2.6E-45 5.6E-50 298.2 16.3 124 6-129 34-157 (308)
6 PRK08072 nicotinate-nucleotide 100.0 6E-45 1.3E-49 292.9 16.1 125 5-129 19-145 (277)
7 PRK07428 nicotinate-nucleotide 100.0 6E-45 1.3E-49 294.3 16.2 125 5-129 26-153 (288)
8 PRK06096 molybdenum transport 100.0 6.2E-45 1.3E-49 293.7 16.1 123 5-129 18-144 (284)
9 PRK06559 nicotinate-nucleotide 100.0 6.4E-45 1.4E-49 294.1 16.0 125 5-129 26-154 (290)
10 cd01572 QPRTase Quinolinate ph 100.0 1.9E-44 4.1E-49 288.6 16.0 125 5-129 13-139 (268)
11 PRK05742 nicotinate-nucleotide 100.0 2.1E-44 4.5E-49 289.8 16.2 124 5-129 22-147 (277)
12 TIGR01334 modD putative molybd 100.0 2.4E-44 5.1E-49 289.5 16.2 123 5-129 17-143 (277)
13 PRK07896 nicotinate-nucleotide 100.0 3E-44 6.4E-49 290.3 16.2 125 5-129 28-157 (289)
14 PRK08385 nicotinate-nucleotide 100.0 3.6E-44 7.9E-49 288.5 15.7 123 5-129 15-141 (278)
15 TIGR00078 nadC nicotinate-nucl 100.0 5.7E-44 1.2E-48 285.5 15.8 123 5-129 11-135 (265)
16 PRK09016 quinolinate phosphori 100.0 7.1E-44 1.5E-48 288.7 16.4 123 6-129 42-166 (296)
17 cd01573 modD_like ModD; Quinol 100.0 9.6E-44 2.1E-48 285.1 15.9 123 5-129 13-139 (272)
18 cd01568 QPRTase_NadC Quinolina 100.0 3.7E-43 8E-48 281.0 15.6 124 5-129 13-138 (269)
19 PRK05848 nicotinate-nucleotide 100.0 4.2E-43 9E-48 281.8 15.9 122 5-129 16-139 (273)
20 KOG3008 Quinolinate phosphorib 100.0 1.3E-35 2.8E-40 232.9 7.3 120 3-129 31-154 (300)
21 PRK08662 nicotinate phosphorib 100.0 9.4E-35 2E-39 239.6 12.1 120 6-129 21-150 (343)
22 cd01571 NAPRTase_B Nicotinate 100.0 1.2E-34 2.6E-39 235.3 9.7 121 6-129 7-133 (302)
23 PF02749 QRPTase_N: Quinolinat 100.0 2.1E-31 4.5E-36 181.4 10.2 87 5-93 2-88 (88)
24 cd00516 PRTase_typeII Phosphor 100.0 1.3E-30 2.7E-35 207.7 14.7 122 8-129 1-133 (281)
25 PRK07188 nicotinate phosphorib 100.0 3.5E-30 7.5E-35 213.2 15.3 113 17-129 35-152 (352)
26 cd01570 NAPRTase_A Nicotinate 99.3 1.9E-11 4.2E-16 100.6 12.3 103 17-120 21-158 (327)
27 PRK09243 nicotinate phosphorib 99.3 1.3E-11 2.9E-16 105.8 11.6 104 16-120 29-167 (464)
28 cd01567 NAPRTase_PncB Nicotina 99.1 4.2E-10 9.2E-15 92.6 11.0 103 17-120 20-169 (343)
29 TIGR01513 NAPRTase_put putativ 98.9 1.4E-08 3.1E-13 86.8 11.8 101 18-119 22-157 (443)
30 PRK12484 nicotinate phosphorib 98.9 2.4E-08 5.2E-13 85.4 11.5 100 18-118 25-159 (443)
31 COG1488 PncB Nicotinic acid ph 98.8 3.4E-08 7.3E-13 83.7 10.9 101 19-120 36-170 (405)
32 PRK09198 putative nicotinate p 98.4 3.5E-06 7.6E-11 72.6 10.6 57 50-107 98-158 (463)
33 cd01569 PBEF_like pre-B-cell c 98.2 9.3E-06 2E-10 69.0 8.7 57 50-107 96-156 (407)
34 PHA02594 nadV nicotinamide pho 98.1 2.3E-05 5.1E-10 67.7 8.9 57 50-107 101-161 (470)
35 PLN02885 nicotinate phosphorib 97.9 0.00013 2.8E-09 64.2 10.8 99 18-117 33-170 (545)
36 cd01401 PncB_like Nicotinate p 97.1 0.0027 6E-08 53.6 8.5 101 18-119 23-176 (377)
37 PRK05321 nicotinate phosphorib 96.1 0.055 1.2E-06 46.2 9.4 54 65-118 106-178 (400)
38 PF13533 Biotin_lipoyl_2: Biot 94.7 0.033 7.2E-07 33.7 2.7 25 52-76 14-38 (50)
39 TIGR01514 NAPRTase nicotinate 94.5 0.2 4.3E-06 42.8 7.7 101 17-117 24-178 (394)
40 PF07831 PYNP_C: Pyrimidine nu 93.4 0.24 5.2E-06 32.6 4.9 38 47-84 29-67 (75)
41 PF00364 Biotin_lipoyl: Biotin 92.7 0.12 2.7E-06 33.4 2.7 23 52-74 18-40 (74)
42 TIGR02645 ARCH_P_rylase putati 92.4 0.87 1.9E-05 40.0 8.3 64 18-81 409-478 (493)
43 PRK05889 putative acetyl-CoA c 92.2 0.21 4.6E-06 31.9 3.3 26 50-75 12-37 (71)
44 PRK06748 hypothetical protein; 91.9 0.24 5.2E-06 33.5 3.5 24 50-73 14-37 (83)
45 TIGR03327 AMP_phos AMP phospho 89.8 2.3 4.9E-05 37.5 8.4 64 18-81 410-479 (500)
46 PRK04350 thymidine phosphoryla 89.5 1.6 3.5E-05 38.3 7.3 64 18-81 401-470 (490)
47 PRK05820 deoA thymidine phosph 88.5 4.2 9.1E-05 35.3 9.0 61 18-78 336-409 (440)
48 PRK06078 pyrimidine-nucleoside 88.2 5.4 0.00012 34.6 9.5 61 18-78 331-404 (434)
49 PRK08225 acetyl-CoA carboxylas 87.8 0.87 1.9E-05 28.8 3.5 25 50-74 11-35 (70)
50 TIGR02644 Y_phosphoryl pyrimid 87.5 2.8 6E-05 36.0 7.3 60 18-77 329-401 (405)
51 COG0508 AceF Pyruvate/2-oxoglu 87.2 0.63 1.4E-05 39.6 3.2 24 51-74 19-42 (404)
52 cd06850 biotinyl_domain The bi 86.6 0.97 2.1E-05 27.3 3.1 21 53-73 12-32 (67)
53 TIGR02643 T_phosphoryl thymidi 86.1 5.6 0.00012 34.6 8.4 62 18-79 335-409 (437)
54 COG0213 DeoA Thymidine phospho 85.4 2.8 6E-05 36.3 6.2 64 18-81 332-408 (435)
55 KOG0557 Dihydrolipoamide acety 85.1 0.74 1.6E-05 40.1 2.6 25 51-75 55-79 (470)
56 PRK14875 acetoin dehydrogenase 85.0 1.1 2.4E-05 35.7 3.5 24 51-74 19-42 (371)
57 KOG2511 Nicotinic acid phospho 83.1 0.73 1.6E-05 39.1 1.7 53 54-106 99-151 (420)
58 PRK08225 acetyl-CoA carboxylas 82.6 1.6 3.5E-05 27.5 2.9 22 51-72 49-70 (70)
59 COG0511 AccB Biotin carboxyl c 82.1 1.9 4.1E-05 31.5 3.4 24 50-73 80-103 (140)
60 cd06850 biotinyl_domain The bi 81.6 4.5 9.7E-05 24.3 4.6 19 53-71 49-67 (67)
61 cd06663 Biotinyl_lipoyl_domain 81.6 3 6.4E-05 26.2 3.8 25 50-74 15-39 (73)
62 PTZ00144 dihydrolipoamide succ 80.5 2 4.2E-05 37.0 3.5 24 50-73 60-83 (418)
63 PF00529 HlyD: HlyD family sec 80.4 1.1 2.4E-05 35.0 1.8 26 50-75 11-36 (305)
64 PRK05641 putative acetyl-CoA c 80.0 2.5 5.4E-05 31.5 3.5 25 50-74 94-118 (153)
65 TIGR00830 PTBA PTS system, glu 78.5 2.6 5.6E-05 30.3 3.1 22 51-72 81-102 (121)
66 PRK06549 acetyl-CoA carboxylas 78.4 3.1 6.7E-05 30.3 3.5 24 50-73 71-94 (130)
67 PLN02226 2-oxoglutarate dehydr 78.0 2.4 5.2E-05 37.0 3.3 24 50-73 107-130 (463)
68 PF12700 HlyD_2: HlyD family s 77.5 3 6.6E-05 32.9 3.5 26 51-76 31-56 (328)
69 TIGR02971 heterocyst_DevB ABC 77.0 9.4 0.0002 30.7 6.3 24 52-75 28-51 (327)
70 cd00210 PTS_IIA_glc PTS_IIA, P 76.0 3.3 7.2E-05 29.8 3.1 22 51-72 81-102 (124)
71 cd06848 GCS_H Glycine cleavage 75.4 9.2 0.0002 25.7 5.0 39 32-74 16-55 (96)
72 COG0511 AccB Biotin carboxyl c 74.5 3.9 8.4E-05 29.8 3.1 24 49-72 116-139 (140)
73 PRK09439 PTS system glucose-sp 74.4 3.8 8.3E-05 31.1 3.2 22 51-72 103-124 (169)
74 PRK07051 hypothetical protein; 74.3 4.8 0.0001 26.3 3.3 21 52-72 59-79 (80)
75 PF10011 DUF2254: Predicted me 73.4 16 0.00035 30.6 7.0 47 24-72 197-245 (371)
76 PF00358 PTS_EIIA_1: phosphoen 72.4 3.5 7.5E-05 30.0 2.4 22 51-72 85-106 (132)
77 TIGR01347 sucB 2-oxoglutarate 72.3 4.5 9.8E-05 34.5 3.5 19 54-72 57-75 (403)
78 PRK05704 dihydrolipoamide succ 71.4 4.5 9.7E-05 34.5 3.3 20 54-73 59-78 (407)
79 PF00364 Biotin_lipoyl: Biotin 70.5 4.6 0.0001 25.9 2.5 35 19-71 40-74 (74)
80 TIGR00998 8a0101 efflux pump m 70.0 4.3 9.2E-05 32.6 2.7 24 52-75 54-77 (334)
81 COG2190 NagE Phosphotransferas 69.8 5.1 0.00011 30.2 2.9 22 51-72 88-109 (156)
82 PRK15136 multidrug efflux syst 69.1 4.8 0.0001 33.7 2.9 24 52-75 73-96 (390)
83 TIGR01843 type_I_hlyD type I s 68.9 4.3 9.4E-05 33.3 2.6 27 50-76 53-79 (423)
84 PRK03598 putative efflux pump 68.5 5.3 0.00011 32.3 3.0 24 52-75 55-78 (331)
85 PRK10559 p-hydroxybenzoic acid 68.3 4.7 0.0001 32.7 2.7 24 52-75 59-82 (310)
86 PLN02983 biotin carboxyl carri 67.9 4.5 9.8E-05 33.1 2.4 22 53-74 217-238 (274)
87 PRK10476 multidrug resistance 66.2 6.7 0.00015 32.0 3.2 23 52-74 60-82 (346)
88 TIGR01000 bacteriocin_acc bact 66.0 5.2 0.00011 34.1 2.6 27 49-75 68-94 (457)
89 PRK07051 hypothetical protein; 64.4 7.6 0.00016 25.3 2.6 21 54-74 24-44 (80)
90 TIGR01348 PDHac_trf_long pyruv 64.1 6.5 0.00014 34.8 2.9 22 51-72 132-153 (546)
91 PRK11854 aceF pyruvate dehydro 64.0 6.4 0.00014 35.4 2.9 23 50-72 220-242 (633)
92 PRK05889 putative acetyl-CoA c 63.9 10 0.00022 24.0 3.1 21 52-72 51-71 (71)
93 TIGR00531 BCCP acetyl-CoA carb 63.3 6.6 0.00014 29.1 2.4 20 54-73 101-120 (156)
94 TIGR02927 SucB_Actino 2-oxoglu 63.3 7.7 0.00017 34.7 3.2 23 50-72 151-173 (590)
95 cd03522 MoeA_like MoeA_like. T 62.8 35 0.00077 28.2 6.8 55 18-74 76-130 (312)
96 PLN02744 dihydrolipoyllysine-r 62.8 7.8 0.00017 34.5 3.1 24 50-73 128-151 (539)
97 TIGR01108 oadA oxaloacetate de 62.6 8.6 0.00019 34.4 3.4 25 49-73 526-550 (582)
98 TIGR01730 RND_mfp RND family e 62.1 7.9 0.00017 30.4 2.8 23 53-75 39-61 (322)
99 PRK14042 pyruvate carboxylase 61.6 9.7 0.00021 34.3 3.5 26 49-74 534-559 (596)
100 PF05896 NQRA: Na(+)-transloca 60.8 7.9 0.00017 31.4 2.6 34 50-83 39-84 (257)
101 TIGR03794 NHPM_micro_HlyD NHPM 60.3 9.6 0.00021 32.0 3.1 25 52-76 70-94 (421)
102 PF09324 DUF1981: Domain of un 59.4 8.9 0.00019 25.5 2.3 23 72-94 47-69 (86)
103 PRK06302 acetyl-CoA carboxylas 59.4 8.8 0.00019 28.4 2.5 21 54-74 100-120 (155)
104 PLN02528 2-oxoisovalerate dehy 58.7 11 0.00025 32.2 3.3 19 54-72 55-73 (416)
105 cd01433 Ribosomal_L16_L10e Rib 58.6 16 0.00034 25.4 3.6 16 61-76 75-90 (112)
106 PRK09578 periplasmic multidrug 58.4 28 0.0006 28.9 5.5 22 53-74 76-97 (385)
107 PRK11855 dihydrolipoamide acet 57.8 11 0.00024 33.2 3.2 25 50-74 134-158 (547)
108 PRK11578 macrolide transporter 57.7 9.8 0.00021 31.3 2.7 22 53-74 74-95 (370)
109 PRK11556 multidrug efflux syst 57.5 10 0.00023 32.0 2.9 24 52-75 99-122 (415)
110 PRK06748 hypothetical protein; 56.8 15 0.00034 24.6 3.1 20 53-72 55-74 (83)
111 PRK15030 multidrug efflux syst 55.6 12 0.00026 31.3 3.0 23 52-74 77-99 (397)
112 PRK09859 multidrug efflux syst 54.4 12 0.00026 31.1 2.7 23 52-74 73-95 (385)
113 PRK11856 branched-chain alpha- 53.6 16 0.00035 30.8 3.4 21 52-72 20-40 (411)
114 PRK14040 oxaloacetate decarbox 53.0 15 0.00034 32.9 3.4 26 49-74 533-558 (593)
115 PRK11854 aceF pyruvate dehydro 52.6 16 0.00034 33.0 3.3 21 54-74 57-77 (633)
116 cd06849 lipoyl_domain Lipoyl d 52.3 25 0.00055 20.3 3.3 22 52-73 18-39 (74)
117 COG0845 AcrA Membrane-fusion p 52.2 40 0.00087 26.1 5.3 24 50-73 76-99 (372)
118 PF13375 RnfC_N: RnfC Barrel s 52.0 13 0.00027 25.8 2.1 25 50-74 40-64 (101)
119 PRK06302 acetyl-CoA carboxylas 51.0 19 0.00042 26.6 3.1 23 50-72 133-155 (155)
120 TIGR01349 PDHac_trf_mito pyruv 50.9 16 0.00034 31.5 3.0 19 54-72 56-75 (435)
121 TIGR00531 BCCP acetyl-CoA carb 50.9 21 0.00045 26.5 3.3 23 50-72 134-156 (156)
122 PRK11855 dihydrolipoamide acet 49.7 20 0.00043 31.6 3.5 25 50-74 17-41 (547)
123 PRK09783 copper/silver efflux 49.4 35 0.00075 28.8 4.8 21 54-74 137-158 (409)
124 COG1566 EmrA Multidrug resista 48.4 21 0.00045 30.1 3.2 26 50-75 63-88 (352)
125 TIGR02712 urea_carbox urea car 48.2 19 0.00041 35.0 3.3 25 50-74 1142-1166(1201)
126 PRK11892 pyruvate dehydrogenas 47.5 20 0.00044 31.2 3.2 24 51-74 19-42 (464)
127 TIGR02927 SucB_Actino 2-oxoglu 46.7 24 0.00053 31.5 3.6 25 51-75 19-43 (590)
128 TIGR01348 PDHac_trf_long pyruv 45.7 24 0.00051 31.3 3.3 24 51-74 16-39 (546)
129 TIGR03077 not_gcvH glycine cle 45.4 58 0.0013 22.8 4.7 40 31-74 16-56 (110)
130 PRK01202 glycine cleavage syst 45.1 54 0.0012 23.4 4.6 41 31-74 23-63 (127)
131 COG1726 NqrA Na+-transporting 45.0 4 8.7E-05 35.0 -1.5 35 50-84 39-85 (447)
132 TIGR01235 pyruv_carbox pyruvat 44.7 26 0.00057 33.9 3.7 26 49-74 1083-1108(1143)
133 TIGR01995 PTS-II-ABC-beta PTS 44.3 21 0.00047 32.0 2.9 22 51-72 545-566 (610)
134 PRK06549 acetyl-CoA carboxylas 43.8 26 0.00057 25.4 2.8 19 53-71 111-129 (130)
135 PRK00624 glycine cleavage syst 42.4 43 0.00094 23.7 3.7 40 31-74 18-58 (114)
136 PRK09824 PTS system beta-gluco 42.1 23 0.0005 32.1 2.8 22 51-72 561-582 (627)
137 PF02843 GARS_C: Phosphoribosy 41.7 37 0.0008 22.9 3.2 36 56-91 41-76 (93)
138 PRK10255 PTS system N-acetyl g 40.7 26 0.00056 32.0 2.8 21 52-72 582-602 (648)
139 PF13437 HlyD_3: HlyD family s 40.6 45 0.00098 21.9 3.5 22 53-74 12-33 (105)
140 PRK05641 putative acetyl-CoA c 40.5 39 0.00085 25.1 3.4 21 51-71 132-152 (153)
141 TIGR01164 rplP_bact ribosomal 39.3 39 0.00084 24.3 3.1 14 61-74 95-108 (126)
142 PRK09282 pyruvate carboxylase 38.9 36 0.00078 30.6 3.4 23 50-72 532-554 (592)
143 PF01551 Peptidase_M23: Peptid 36.6 38 0.00083 22.1 2.6 19 55-73 56-74 (96)
144 COG4770 Acetyl/propionyl-CoA c 35.9 47 0.001 30.2 3.6 25 49-73 584-608 (645)
145 PF00252 Ribosomal_L16: Riboso 35.7 48 0.001 23.9 3.1 52 23-75 31-109 (133)
146 cd07298 PX_RICS The phosphoino 35.5 41 0.00088 24.2 2.6 19 80-98 84-102 (115)
147 PF01597 GCV_H: Glycine cleava 35.2 93 0.002 21.9 4.5 40 32-74 18-57 (122)
148 CHL00044 rpl16 ribosomal prote 34.2 66 0.0014 23.4 3.7 16 61-76 96-111 (135)
149 TIGR01730 RND_mfp RND family e 34.0 69 0.0015 25.0 4.1 36 22-75 134-169 (322)
150 COG0197 RplP Ribosomal protein 33.8 36 0.00079 25.4 2.3 61 18-78 30-116 (146)
151 COG1038 PycA Pyruvate carboxyl 33.2 37 0.0008 32.4 2.6 25 49-73 1088-1112(1149)
152 cd06254 M14_ASTE_ASPA_like_4 A 32.4 56 0.0012 26.2 3.3 24 51-74 233-256 (288)
153 PRK12999 pyruvate carboxylase; 32.0 49 0.0011 32.1 3.3 25 49-73 1085-1109(1146)
154 PRK15325 type III secretion sy 31.7 1.5E+02 0.0032 20.0 4.7 34 73-106 41-74 (80)
155 PRK13380 glycine cleavage syst 30.2 91 0.002 22.8 3.9 40 32-74 31-70 (144)
156 cd02396 PCBP_like_KH K homolog 30.2 1.3E+02 0.0029 18.3 5.4 42 37-82 20-61 (65)
157 KOG0559 Dihydrolipoamide succi 29.8 51 0.0011 28.5 2.8 24 50-73 125-148 (457)
158 cd06255 M14_ASTE_ASPA_like_5 A 29.5 67 0.0015 25.9 3.3 26 52-77 242-267 (293)
159 PRK09783 copper/silver efflux 28.8 1.3E+02 0.0027 25.5 5.0 34 23-74 210-243 (409)
160 cd06251 M14_ASTE_ASPA_like_1 A 28.6 71 0.0015 25.6 3.3 25 51-75 229-253 (287)
161 KOG2192 PolyC-binding hnRNP-K 27.7 2.6E+02 0.0056 23.4 6.4 52 34-90 332-383 (390)
162 PLN02983 biotin carboxyl carri 27.3 78 0.0017 26.0 3.3 23 50-72 251-273 (274)
163 PRK09203 rplP 50S ribosomal pr 27.3 77 0.0017 23.1 3.1 14 61-74 96-109 (138)
164 CHL00121 rpl27 ribosomal prote 26.6 50 0.0011 22.5 1.8 21 54-74 23-43 (86)
165 TIGR00999 8a0102 Membrane Fusi 26.3 63 0.0014 24.7 2.6 16 59-74 1-16 (265)
166 TIGR03309 matur_yqeB selenium- 25.8 77 0.0017 25.7 3.0 23 51-73 174-196 (256)
167 PF03470 zf-XS: XS zinc finger 25.8 47 0.001 19.8 1.4 12 85-96 14-25 (43)
168 cd06253 M14_ASTE_ASPA_like_3 A 25.2 79 0.0017 25.6 3.1 23 52-74 240-262 (298)
169 TIGR02386 rpoC_TIGR DNA-direct 25.0 53 0.0011 32.0 2.2 28 53-80 967-994 (1140)
170 PLN02528 2-oxoisovalerate dehy 25.0 1.7E+02 0.0037 25.0 5.2 17 19-35 38-54 (416)
171 cd06250 M14_PaAOTO_like An unc 24.7 89 0.0019 26.1 3.3 24 52-75 300-323 (359)
172 TIGR01936 nqrA NADH:ubiquinone 24.3 48 0.001 28.8 1.7 25 50-74 39-63 (447)
173 PF06241 DUF1012: Protein of u 24.2 99 0.0022 24.2 3.2 34 29-72 115-148 (206)
174 TIGR02994 ectoine_eutE ectoine 24.2 92 0.002 25.7 3.3 22 52-73 266-287 (325)
175 TIGR03092 SASP_sspI small, aci 24.0 38 0.00082 22.0 0.8 13 115-127 31-44 (65)
176 PLN02226 2-oxoglutarate dehydr 23.9 88 0.0019 27.4 3.2 25 50-74 144-168 (463)
177 PF01016 Ribosomal_L27: Riboso 23.9 53 0.0012 22.1 1.5 21 54-74 22-42 (81)
178 cd06252 M14_ASTE_ASPA_like_2 A 23.7 98 0.0021 25.2 3.3 24 52-75 255-278 (316)
179 PF11607 DUF3247: Protein of u 23.7 1.5E+02 0.0032 20.7 3.7 28 36-63 15-42 (101)
180 PRK05435 rpmA 50S ribosomal pr 23.1 72 0.0016 21.6 2.0 21 54-74 23-43 (82)
181 PRK10871 nlpD lipoprotein NlpD 22.9 61 0.0013 27.1 2.0 18 55-72 273-290 (319)
182 PF09891 DUF2118: Uncharacteri 22.8 1E+02 0.0022 23.0 3.0 24 49-72 89-112 (150)
183 PRK14875 acetoin dehydrogenase 22.6 1.2E+02 0.0025 24.1 3.5 21 53-73 58-78 (371)
184 COG0211 RpmA Ribosomal protein 22.1 74 0.0016 21.7 1.9 20 55-74 24-43 (87)
185 cd02394 vigilin_like_KH K homo 22.1 1.9E+02 0.004 17.2 4.5 41 37-84 20-60 (62)
186 PF00936 BMC: BMC domain; Int 21.3 2.4E+02 0.0051 18.1 6.6 55 31-91 10-64 (75)
187 TIGR00279 L10e ribosomal prote 21.2 1.1E+02 0.0024 23.4 3.0 18 61-78 125-142 (172)
188 PF06898 YqfD: Putative stage 21.1 81 0.0018 26.6 2.4 40 21-71 188-227 (385)
189 KOG0558 Dihydrolipoamide trans 20.7 22 0.00048 30.5 -1.0 25 53-77 83-107 (474)
190 TIGR00062 L27 ribosomal protei 20.5 78 0.0017 21.5 1.8 21 54-74 23-43 (83)
191 cd07299 PX_TCGAP The phosphoin 20.4 1.1E+02 0.0024 21.8 2.6 20 79-98 81-100 (113)
192 cd07278 PX_RICS_like The phosp 20.1 1.1E+02 0.0025 21.8 2.6 22 77-98 80-101 (114)
No 1
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-47 Score=307.55 Aligned_cols=125 Identities=45% Similarity=0.739 Sum_probs=122.0
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||++++|++.++++.|++||+||+||++++.++|+.+||+++++|+++||++++||++|++++|+++.||++||+
T Consensus 19 g~gDiTt~al~~~~~~a~a~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~~i~~~~G~a~~lL~~ER~ 98 (280)
T COG0157 19 GRGDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGDVLAEIEGPARALLTAERT 98 (280)
T ss_pred CCCCcccccccCCCCeEEEEEEEcCCcEEEcHHHHHHHHHHhCCceEEEEEcCCCCEeCCCCEEEEEeccHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 99 aLN~L~~lSGIAT~T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV 145 (280)
T COG0157 99 ALNFLQHLSGIATATARMVEALRGTNVRIADTRKTTPGLRLLEKYAV 145 (280)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhccCcEEEeccCCCccHHHHHHHHH
Confidence 99999999999999999999995 6899999999999999999997
No 2
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.9e-46 Score=300.95 Aligned_cols=125 Identities=42% Similarity=0.686 Sum_probs=121.5
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||+++++++.+++++|++|++||+||++++.++|+.+|++++++|+++||+.+++|++|++++|++++||++||+
T Consensus 20 ~~gDlTt~~l~~~~~~~~a~i~are~gvlaG~~~a~~if~~~~~~~~v~~~~~dG~~v~~G~~i~~~~G~a~~ll~~eR~ 99 (281)
T PRK06543 20 PWGDITSETLIPASATASAHLTAREPGVFSGIDVFAAAFRLVDPAITVTLAVADGERFEAGDILATVTGPARSVLTAERI 99 (281)
T ss_pred CCCCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCCeEEEEEeCCCCEecCCCEEEEEEecHHHHHHHHHH
Confidence 67999999999888999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+||+||++++ +++|+|||||+||+|.||||||
T Consensus 100 alN~l~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 146 (281)
T PRK06543 100 ALNFTQRMSGIATLTAAFVDAVNGTRARIVDTRKTTPGLRIFERYAV 146 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCCCCcchHHHHHHH
Confidence 99999999999999999999994 6999999999999999999997
No 3
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1.2e-45 Score=297.39 Aligned_cols=124 Identities=40% Similarity=0.631 Sum_probs=120.9
Q ss_pred CCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHH
Q 033026 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVV 85 (129)
Q Consensus 6 ~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~ 85 (129)
+||+||+++++++.+++++|++|++||+||++++.++|+.+|++++++|+++||+.+++|++|++++|++++||++||++
T Consensus 26 ~gDlTt~~l~~~~~~~~~~i~ake~gv~aG~~~a~~vf~~~~~~~~~~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~ 105 (281)
T PRK06106 26 AGDITSDAIVPADHRATVVLVARQPGVIAGLDLARLAFRLVDPEIEMRRHLPDGAAVAPGDVIATISGPARGLLTAERTA 105 (281)
T ss_pred CCCCCcccccCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCceEEEEEeCCCCEEcCCCEEEEEEECHHHHHHHHHHH
Confidence 69999999999899999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 86 LNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 86 LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 106 LN~L~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 151 (281)
T PRK06106 106 LNFLCHLSGIATATASIVAAIAGTKAKVVCTRKTTPGLRALEKYAV 151 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHHHHHHH
Confidence 9999999999999999999995 6999999999999999999997
No 4
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=1.3e-45 Score=298.51 Aligned_cols=124 Identities=35% Similarity=0.617 Sum_probs=119.4
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+|| .+++++.++++.|++|++||+||++++.++|+.+|++++++|+++||+.++||++|++++|++++||++||+
T Consensus 38 ~~gDlTt-~~~~~~~~~~a~i~are~gvlaG~~~a~~if~~l~~~~~v~~~~~dG~~v~~G~~i~~~~G~a~~lL~~ER~ 116 (294)
T PRK06978 38 GSGDQTG-RLVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTWRYREGDRMTADSTVCELEGPARALLTAERN 116 (294)
T ss_pred CCCCCCc-cccCCCceEEEEEEEcCCEEEECHHHHHHHHHHhCCCeEEEEEcCCCCEeCCCCEEEEEEeCHHHHHHHHHH
Confidence 5799999 577778899999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+||+||+++. +++|+|||||+||+|.||||||
T Consensus 117 aLN~l~~~SGIAT~T~~~V~~~~~~~~~I~dTRKT~PGlR~lekyAV 163 (294)
T PRK06978 117 ALNFLQLLSGVASATRRYVDRIAGTRARILDTRKTLPGLRLAQKYAV 163 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcEEEecCCCCCchhHHHHHHH
Confidence 99999999999999999999994 6999999999999999999997
No 5
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=100.00 E-value=2.6e-45 Score=298.22 Aligned_cols=124 Identities=79% Similarity=1.197 Sum_probs=121.7
Q ss_pred CCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHH
Q 033026 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVV 85 (129)
Q Consensus 6 ~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~ 85 (129)
+||+||+++++++.++++.|++|++||+||++++.++|+.+||+++++|+++||+.|+||++|++++|++++||++||++
T Consensus 34 ~gDlTt~~~~~~~~~~~a~i~ake~gvlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~G~~i~~v~G~a~~il~~ER~a 113 (308)
T PLN02716 34 RGDVTCLATIPGDMEAEATFLAKADGVLAGIALADMVFEEVDPSLKVEWAAIDGDFVHKGLKFGKVTGPAHSILVAERVV 113 (308)
T ss_pred CCCCCcccccCCCCeEEEEEEeCCCEEEECHHHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEEECHHHHHHHHHHH
Confidence 79999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhCCCeEeeccCCCCCchhhhhhcC
Q 033026 86 LNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 86 LN~L~~~SGIAT~T~~~v~~a~~~~i~~TRKt~PGlR~leKyAV 129 (129)
||||||+|||||+|++||+++++.+|+|||||+||+|.||||||
T Consensus 114 LN~L~~~SGIAT~T~~~V~~~~~~~I~~TRKT~PGlR~l~k~AV 157 (308)
T PLN02716 114 LNFMQRMSGIATLTKAMADAAKPACILETRKTAPGLRLVDKWAV 157 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCEEeeecCCCCcchHHHHHHH
Confidence 99999999999999999999998899999999999999999997
No 6
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=6e-45 Score=292.92 Aligned_cols=125 Identities=43% Similarity=0.608 Sum_probs=120.4
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||.++++++.++++.|++|++||+||++++.++|+.++++++++|+++||+.+++|++|++++|++++||++||+
T Consensus 19 ~~~DlTt~~~i~~~~~~~~~~~ar~~gv~~G~~~a~~i~~~~~~~~~v~~~~~dG~~v~~g~~i~~~~G~~~~ll~~er~ 98 (277)
T PRK08072 19 GEGDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERIEVELHKKDGDLVKKGEIIATVQGPVASLLTGERV 98 (277)
T ss_pred CCCCCCcccccCCCCeEEEEEEecCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEEEEEECHHHHHHHHHH
Confidence 67999999988877789999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 99 ~ln~l~~~sGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~R~~~k~Av 145 (277)
T PRK08072 99 ILNLIQRMSGIATMTRKAVLALDDSHIRICDTRKTTPGLRMFDKYAV 145 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHH
Confidence 99999999999999999999994 6899999999999999999997
No 7
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=6e-45 Score=294.27 Aligned_cols=125 Identities=36% Similarity=0.607 Sum_probs=120.7
Q ss_pred CCCCcccccccCCC-CEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHH
Q 033026 5 SAGDVTCMATIPLD-MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAER 83 (129)
Q Consensus 5 ~~gDlTt~~~~~~~-~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER 83 (129)
|+||+||+++++++ .+++++|++|++||+||++++.++|+.+|++++++|+++||+.+++|++|++++|++++||++||
T Consensus 26 ~~~DlTt~~~~~~~~~~~~~~i~ar~~gv~~G~~~a~~i~~~~~~~~~~~~~~~dG~~v~~g~~i~~~~G~a~~ll~~eR 105 (288)
T PRK07428 26 GRGDRTTQGLLLEDATTGQAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPLVAEGAACESGQVVAEIEGPLDALLMGER 105 (288)
T ss_pred CCCCCCcccccCCCCcEEEEEEEecCCeEEECHHHHHHHHHHcCCcEEEEEEcCCCCEecCCCEEEEEEEcHHHHHHHHH
Confidence 57999999988887 89999999999999999999999999999888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 84 VVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 84 ~~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
++||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 106 ~~lN~l~~~SGIAT~T~~~v~~~~~~~~~i~~TRKt~Pg~R~l~k~AV 153 (288)
T PRK07428 106 VALNLAMRLSGIATLTRQYVEKIADLPTQLVDTRKTTPGLRLLEKYAT 153 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCcchHHHHHHH
Confidence 999999999999999999999994 6999999999999999999997
No 8
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=100.00 E-value=6.2e-45 Score=293.68 Aligned_cols=123 Identities=24% Similarity=0.330 Sum_probs=119.4
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||+++++++.++++.|++|++||+||++++.++|+.++ ++++|+++||+.++||++|++++|++++||++||+
T Consensus 18 ~~gDlTt~~l~~~~~~~~~~~~ake~gv~aG~~~a~~if~~l~--~~v~~~~~dG~~v~~G~~i~~~~G~a~~ll~~eR~ 95 (284)
T PRK06096 18 QGGDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSDGSQANAGQRLISAQGNAAALHQGWKA 95 (284)
T ss_pred CCCCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEEEEeCHHHHHHHHHH
Confidence 6899999999998999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh----CCCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLA----HPATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a----~~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||+++ ++++|+|||||+||+|.||||||
T Consensus 96 alN~l~~~SGIAT~T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV 144 (284)
T PRK06096 96 VQNVLEWSCGVSDYLAQMLALLRERYPDGNIACTRKAIPGTRLLATQAV 144 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEecCcCCCchhHHHHHHH
Confidence 9999999999999999999998 35999999999999999999997
No 9
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=6.4e-45 Score=294.10 Aligned_cols=125 Identities=33% Similarity=0.538 Sum_probs=120.9
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEec--CCCCeeecCCEEEEEEechhhHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSL--KDGDHVHKGLQFGKVSGRAHSIVIAE 82 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~--~dG~~v~~g~~i~~i~G~a~~ll~~E 82 (129)
|+||+||+++++++.++++.|++|++||+||++++.++|+.+|++++++|++ +||+.++||++|++++|++++||++|
T Consensus 26 ~~gDlTt~~l~~~~~~~~~~~~are~gvlaG~~~a~~if~~l~~~~~~~~~~~~~dG~~v~~G~~i~~v~G~a~~ll~~E 105 (290)
T PRK06559 26 HSEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCE 105 (290)
T ss_pred CCCCCCccccCCCCCeEEEEEEecCCeEEECHHHHHHHHHHhCCcEEEEEeecCCCCCEecCCCEEEEEEECHHHHHHHH
Confidence 6799999999998999999999999999999999999999999889999888 99999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 83 RVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 83 R~~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
|++||||||+|||||+||+||+++. +++|+|||||+||+|.||||||
T Consensus 106 R~alN~l~~~SGIAT~T~~~V~~~~~~~~~i~~TRKT~PG~R~l~k~AV 154 (290)
T PRK06559 106 RVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRLFEKYAV 154 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecCCCCcchHHHHHHH
Confidence 9999999999999999999999994 6999999999999999999997
No 10
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=100.00 E-value=1.9e-44 Score=288.60 Aligned_cols=125 Identities=51% Similarity=0.826 Sum_probs=121.5
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||+++++++..++++|++|++||+||++++.++|+.++++++++|+++||+.++||++|++++|++++||++||+
T Consensus 13 ~~~D~tt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~~~l~v~~~~~dG~~v~~g~~i~~i~G~~~~ll~~Er~ 92 (268)
T cd01572 13 GRGDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEWLVKDGDRVEPGQVLATVEGPARSLLTAERT 92 (268)
T ss_pred CCCCCCcccccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEEECHHHHHHHHHH
Confidence 67999999998889999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||+|+|||||+|++||++++ +++|++||||+||+|.+|||||
T Consensus 93 ~ln~L~~~SGIAT~t~~~v~~a~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (268)
T cd01572 93 ALNFLQRLSGIATLTRRYVEALAGTKARILDTRKTTPGLRLLEKYAV 139 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCChhhHHHHHHHH
Confidence 99999999999999999999995 6999999999999999999997
No 11
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=2.1e-44 Score=289.84 Aligned_cols=124 Identities=39% Similarity=0.662 Sum_probs=118.9
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+|| .+++++.+++++|++||+||+||++++.++|+.+|++++++|+++||+.++||++|++++|++++||.+||+
T Consensus 22 ~~gDlTt-~~~~~~~~~~~~i~ar~~gi~~G~~~~~~i~~~~~~~~~~~~~~~dG~~v~~g~~i~~i~G~~~~ll~~ER~ 100 (277)
T PRK05742 22 GSGDITA-QLIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHWQVADGERVSANQVLFHLEGPARSLLTGERS 100 (277)
T ss_pred CCCCCCc-cccCCCcEEEEEEEECCCEEEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEEEEEEcHHHHHHHHHH
Confidence 6799999 566778899999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 101 ~ln~l~~~SGIAT~T~~~v~~~~~~~~~i~~TRKt~Pg~R~~~k~Av 147 (277)
T PRK05742 101 ALNFLQLLSGVATRARHYADLVAGTQVKLLDTRKTLPGLRLAQKYAV 147 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHH
Confidence 99999999999999999999994 6999999999999999999997
No 12
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=100.00 E-value=2.4e-44 Score=289.49 Aligned_cols=123 Identities=25% Similarity=0.354 Sum_probs=119.6
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||+++++++.++++.|++|++||+||++++.++|+.+| ++++|+++||+.++||++|++++|++++||++||+
T Consensus 17 ~~gDlTt~~l~~~~~~~~~~~~are~gv~~G~~~~~~i~~~l~--~~~~~~~~dG~~v~~g~~i~~~~G~a~~ll~~eR~ 94 (277)
T TIGR01334 17 GYGDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPSGSRALAGTLLLEAKGSAGQLHQGWKS 94 (277)
T ss_pred CCCCCCCccccCCCceEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEeCCCCEeCCCCEEEEEEecHHHHHHHHHH
Confidence 6899999999998999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC----CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~----~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+||+||++++ +++|+|||||+||+|.||||||
T Consensus 95 alN~l~~~SGIAT~T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av 143 (277)
T TIGR01334 95 AQSVLEWSCGVATYTHKMVTLAKKISPMAVVACTRKAIPLTRPLAVKAV 143 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEecCCCCCChhHHHHHHH
Confidence 99999999999999999999993 5999999999999999999997
No 13
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=3e-44 Score=290.30 Aligned_cols=125 Identities=37% Similarity=0.540 Sum_probs=119.1
Q ss_pred CCC-CcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHh-hcCC-CcEEEEecCCCCeeecCCEEEEEEechhhHHHH
Q 033026 5 SAG-DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFH-EVDP-SLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 81 (129)
Q Consensus 5 ~~g-DlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~-~~~~-~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ 81 (129)
|++ |+||+++++++.+++++|++|++||+||++++.++|+ .+|+ +++++++++||+.++||++|++++|++++||++
T Consensus 28 ~~~~DlTt~~l~~~~~~~~a~i~are~gilaG~~~a~~if~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ 107 (289)
T PRK07896 28 RYGPDVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGTDGYEVLDRVEDGARVPPGQALLTVTAPTRGLLTA 107 (289)
T ss_pred CCCCCCCcCccCCCCCeEEEEEEecCCEEEECHHHHHHHHHHhcCCCceEEEEEcCCCCEecCCCEEEEEEECHHHHHHH
Confidence 455 9999999988999999999999999999999999995 6687 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 82 ERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 82 ER~~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
||++||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 108 ER~aLN~L~~~SGIAT~t~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV 157 (289)
T PRK07896 108 ERTMLNLLCHLSGIATATAAWVDAVAGTKAKIRDTRKTLPGLRALQKYAV 157 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCcchHHHHHHH
Confidence 99999999999999999999999994 6999999999999999999997
No 14
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=3.6e-44 Score=288.52 Aligned_cols=123 Identities=44% Similarity=0.648 Sum_probs=118.8
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||++++|++.+++++|++|++||+||++++.++|+.++ ++++|+++||+.++||++|++++|++++||++||+
T Consensus 15 ~~gDlTt~~li~~~~~~~~~~~ar~~gi~aG~~~a~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~G~~~~ll~~Er~ 92 (278)
T PRK08385 15 PFGDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHFG--VKVEVRKRDGEEVKAGEVILELKGNARAILLVERT 92 (278)
T ss_pred CCCCCCcccccCCCCeEEEEEEecCCeEEeCHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEEEEEECHHHHHHHHHH
Confidence 5799999988887899999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC----CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~----~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 93 ~ln~l~~~SGIAT~T~~~v~~~~~~~~~~~i~~TRKt~Pg~R~l~k~Av 141 (278)
T PRK08385 93 ALNIIGRMSGIATETRKLVELVKAVNPKVRVAGTRKTLPGLRLLDKKAI 141 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCCChhhhHHHHHHH
Confidence 99999999999999999999983 5899999999999999999997
No 15
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=100.00 E-value=5.7e-44 Score=285.53 Aligned_cols=123 Identities=46% Similarity=0.744 Sum_probs=119.5
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||+++++++.+++++|++|++||+||++++.++|+.++ ++++|+++||+.++||++|++++|++++||.+||+
T Consensus 11 ~~gDlTt~~~~~~~~~~~~~~~ar~~~v~~G~~~~~~i~~~~~--~~v~~~~~dG~~v~~g~~i~~i~G~~~~il~~Er~ 88 (265)
T TIGR00078 11 GSGDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEWLVKDGDRVEPGEVVAEVEGPARSLLTAERT 88 (265)
T ss_pred CCCCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHcC--eEEEEEeCCCCEecCCCEEEEEEEcHHHHHHHHHH
Confidence 5799999999988999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 89 ~ln~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~l~k~Av 135 (265)
T TIGR00078 89 ALNFLGRLSGIATATRKYVEAARGTNVRIADTRKTTPGLRLLEKYAV 135 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChhhhHHHHHHH
Confidence 99999999999999999999995 6899999999999999999997
No 16
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=7.1e-44 Score=288.71 Aligned_cols=123 Identities=33% Similarity=0.583 Sum_probs=118.3
Q ss_pred CCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHH
Q 033026 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVV 85 (129)
Q Consensus 6 ~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~ 85 (129)
+||+|| .+++++.+++++|++|++||+||+++++++|+.+|++++++|+++||+.++||++|++++|++++||++||++
T Consensus 42 ~gDlTt-~~l~~~~~~~~~i~ake~gi~aG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~G~~i~~i~G~a~~ll~~ER~~ 120 (296)
T PRK09016 42 NNDITA-QLLPADSRSHATIITREDGVFCGKRWVEEVFIQLGDDVTIEWHVDDGDVITANQTLFELTGPARVLLTGERTA 120 (296)
T ss_pred CCCcCC-cccCCCCEEEEEEEEcCCEEEECHHHHHHHHHHcCCCeEEEEEcCCCCEecCCCEEEEEEECHHHHHHHHHHH
Confidence 699999 5667788999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 86 LNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 86 LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
||||||+|||||+|++||+++. +++|+|||||+||+|.||||||
T Consensus 121 LN~L~~~SGIAT~T~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~AV 166 (296)
T PRK09016 121 LNFVQTLSGVATEVRRYVELLAGTNTQLLDTRKTLPGLRSALKYAV 166 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCchhHHHHHHH
Confidence 9999999999999999999994 6999999999999999999997
No 17
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=100.00 E-value=9.6e-44 Score=285.07 Aligned_cols=123 Identities=27% Similarity=0.324 Sum_probs=119.5
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||+++++++.++++.|++|++||+||++++.++|+.++ ++++|+++||+.++||++|++++|++++||++||+
T Consensus 13 ~~~D~tt~~~~~~~~~~~~~~~ak~~gv~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~i~~i~G~~~~ll~~Er~ 90 (272)
T cd01573 13 PYGDLTTEALGIGEQPGKITFRARDPGVLCGTEEAARILELLG--LEVDLAAASGSRVAAGAVLLEAEGPAAALHLGWKV 90 (272)
T ss_pred CCCCCCccccCCCCCeEEEEEEECCCEEEECHHHHHHHHHHcC--cEEEEEcCCCCEecCCCEEEEEEEcHHHHHHHHHH
Confidence 6799999999988999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC----CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~----~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 91 ~ln~l~~~SGIAT~t~~~v~~~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (272)
T cd01573 91 AQTLLEWASGIATATAEMVAAARAVNPDIVVATTRKAFPGTRKLALKAI 139 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCccchHHHHHHH
Confidence 99999999999999999999994 6999999999999999999997
No 18
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=100.00 E-value=3.7e-43 Score=281.00 Aligned_cols=124 Identities=49% Similarity=0.752 Sum_probs=120.0
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||+++++++..++++|++|++||+||++++.++|+.++ +++++|+++||+.++||++|++++|++++||.+||+
T Consensus 13 ~~gD~tt~~~~~~~~~~~~~i~~r~~~v~~G~~~~~~i~~~~~-~~~v~~~~~dG~~v~~g~~i~~i~G~~~~l~~~Er~ 91 (269)
T cd01568 13 GYGDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEWLVKDGDRVEAGQVLLEVEGPARSLLTAERV 91 (269)
T ss_pred CCCCCCcccccCCCceEEEEEEecCCEEEECHHHHHHHHHHhC-CeEEEEEeCCCCEecCCCEEEEEEEcHHHHHHHHHH
Confidence 6799999999988999999999999999999999999999995 599999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||+|+|||||+|++||++++ ++++++||||+||+|.+|||||
T Consensus 92 ~ln~L~~~sgIAT~t~~~v~~a~~~~~~i~~TRKt~Pg~r~~~k~Av 138 (269)
T cd01568 92 ALNLLQRLSGIATATRRYVEAARGTKARIADTRKTTPGLRLLEKYAV 138 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEeecCCCChhhHHHHHHHH
Confidence 99999999999999999999995 6999999999999999999996
No 19
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=100.00 E-value=4.2e-43 Score=281.78 Aligned_cols=122 Identities=30% Similarity=0.519 Sum_probs=117.3
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+|| .+++.+.+++++|++|++||+||++++.++|+.+| ++++|+++||+.++||++|++++|++++||++||+
T Consensus 16 ~~~DlTt-~~~~~~~~~~a~i~ar~~~v~~G~~~a~~i~~~l~--~~~~~~~~dG~~v~~g~~i~~i~G~a~~ll~~Er~ 92 (273)
T PRK05848 16 GRGDLFE-RLLEKDFKATAKIIAKSEGVFSGEKYALELLEMTG--IECVFTIKDGERFKKGDILMEIEGDFSMLLKVERT 92 (273)
T ss_pred CCCCccc-cccCCCCeEEEEEEEcCCEEEECHHHHHHHHHHcC--CEEEEEcCCCCEecCCCEEEEEEECHHHHHHHHHH
Confidence 6799999 56777889999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 85 VLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 85 ~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||||||+|||||+|++||++++ +++|+|||||+||+|.||||||
T Consensus 93 ~ln~l~~~SGIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 139 (273)
T PRK05848 93 LLNLLQHSSGIATLTSRYVEALESHKVKLLDTRKTRPLLRIFEKYSV 139 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCcchhHHHHHHH
Confidence 99999999999999999999994 6999999999999999999997
No 20
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=232.89 Aligned_cols=120 Identities=43% Similarity=0.664 Sum_probs=112.9
Q ss_pred CCCCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHH
Q 033026 3 GTSAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAE 82 (129)
Q Consensus 3 ~~~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~E 82 (129)
++.+||+++.+. ..+|.+.+|+||++||++++..+|++++ ++|+|+.+||+.+.|+-.+..++|+++.|+.+|
T Consensus 31 ~~~~G~~v~ga~-----~~EA~l~aK~DG~laGVpfAd~iF~q~~--LqVEW~~KeGs~l~p~~~vaKv~GpAh~IllAE 103 (300)
T KOG3008|consen 31 GLNYGALVSGAG-----PSEAALWAKSDGVLAGVPFADAIFTQLN--LQVEWFLKEGSKLVPVARVAKVRGPAHCILLAE 103 (300)
T ss_pred CCcccceEecCC-----hHHHHhhccCCCeeecchhHHHHHhhhc--eeEEEEecCCCeecccceeEeecCcceeeeehH
Confidence 566889997543 2678999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeeccCCCCCchhhhhhcC
Q 033026 83 RVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 83 R~~LN~L~~~SGIAT~T~~~v~~a~----~~~i~~TRKt~PGlR~leKyAV 129 (129)
|++||||+|+|||||.++.++++++ +..|+.||||+||+|.+|||++
T Consensus 104 RvaLN~l~R~SGIATa~~~~~~aAr~~g~~g~IagTRKTtPGLRlveKy~~ 154 (300)
T KOG3008|consen 104 RVALNTLARCSGIATAAAAAVEAARGAGWTGHIAGTRKTTPGLRLVEKYGL 154 (300)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcceecccccCCcchhhhhhhce
Confidence 9999999999999999999999996 6899999999999999999986
No 21
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=9.4e-35 Score=239.64 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=113.2
Q ss_pred CCCcccccc---cCCCCEEEEEEEee-----CCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhh
Q 033026 6 AGDVTCMAT---IPLDMEVEAHFLAK-----EDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 77 (129)
Q Consensus 6 ~gDlTt~~~---~~~~~~~~a~i~ar-----e~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ 77 (129)
|+|+|++.+ .. +..++++|++| ++||+||++++.++|+.++ +++ ++++||+.+.||+++++++|++++
T Consensus 21 Y~~~t~~~l~~~g~-~~~~~~~i~~R~~p~~~~~i~aG~~~a~~~~~~~~--~~v-~~~~dG~~v~~g~~il~i~G~~~~ 96 (343)
T PRK08662 21 YFERTVEILEHAGK-NPKVVAEVTASSLPKGEWGVFAGLEEVLELLEGKP--VDV-YALPEGTLFDPKEPVMRIEGPYLE 96 (343)
T ss_pred HHHHHHHHHHHcCC-CCeEEEEEEEecCCCCCCEEEccHHHHHHHHhhCC--cEE-EEeCCCCEecCCceEEEEEEcHHH
Confidence 679999877 44 78999999999 9999999999999999887 888 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 78 IVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 78 ll~~ER~~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
+|.+||++||+|+|+|||||+|++||++++ ++.+++||||+||+|.++||||
T Consensus 97 ll~~Er~~Ln~L~~~SgIAT~t~~~v~aa~~~~v~~~~TRKt~Pg~r~l~k~Av 150 (343)
T PRK08662 97 FGIYETALLGILAHASGIATAAARCKEAAGDKPVLSFGARHVHPAIAPMMDRAA 150 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEeccCCCCHhHHHHHHhhh
Confidence 999999999999999999999999999996 4778889999999999999997
No 22
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=100.00 E-value=1.2e-34 Score=235.32 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=112.6
Q ss_pred CCCccccccc--CCCCEEEEEEEeeCC--eEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHH
Q 033026 6 AGDVTCMATI--PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 81 (129)
Q Consensus 6 ~gDlTt~~~~--~~~~~~~a~i~are~--gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ 81 (129)
|.|.|++.+. +++..++++|++|++ +|+||++++.++|+.++ +++. .++||+.++||++|++++|++++||.+
T Consensus 7 yf~~t~~~~~~~~~~~~~~~~i~~r~~~~~v~aG~~~~~~~~~~~~--~~i~-~~~dG~~v~~g~~i~~i~G~~~~ll~~ 83 (302)
T cd01571 7 YFLRTRKILEKKGPNPTVTMEFTQRSLPWAVLCGLEEVLALLEGLP--VKVY-ALPEGTIFNPKEPVLRIEGPYQDFGEL 83 (302)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEEEEcCchHHHhhHHHHHHHHhCCC--eEEE-EeCCCCEECCCCcEEEEEeCHHHHHHH
Confidence 5688887643 467889999999999 99999999999999886 8884 699999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 82 ERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 82 ER~~LN~L~~~SGIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
||++||+|+|+|||||+|++||++++ ++++++||||+||+|.++||||
T Consensus 84 Er~~Ln~L~~~SgIAT~t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~Av 133 (302)
T cd01571 84 ETAILGILARASSIATNAARVKLAAGDKPVISFGDRRDHPAIQPMDGRAA 133 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeecccCCcchhHHHHHHH
Confidence 99999999999999999999999995 5999999999999999999996
No 23
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=99.97 E-value=2.1e-31 Score=181.44 Aligned_cols=87 Identities=45% Similarity=0.722 Sum_probs=81.0
Q ss_pred CCCCcccccccCCCCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 5 ~~gDlTt~~~~~~~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
|+||+||+++++++.+++++|++||+||+||++++.++|+.++ ++++|+++||+.++||++|++++|++++||++||+
T Consensus 2 ~~gDlTt~~~~~~~~~~~a~i~are~gV~aG~~~~~~i~~~l~--~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 79 (88)
T PF02749_consen 2 GRGDLTTEALIPPDKTGTATIIAREDGVLAGLEEAEEIFEKLG--LEVEWLVKDGDRVEPGDVILEIEGPARALLTAERT 79 (88)
T ss_dssp TTG-HHHHHHSCTTSEEEEEEEESSSEEE-SHHHHHHHHHHCT--EEEEESS-TT-EEETTCEEEEEEEEHHHHHHHHHH
T ss_pred cCCccCcccccCCCCEEEEEEEeCCCEEEECHHHHHHHHhhcc--EEEEEEeCCCCCccCCcEEEEEEeCHHHHHHHHHH
Confidence 6899999889999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 033026 85 VLNFMQRMS 93 (129)
Q Consensus 85 ~LN~L~~~S 93 (129)
+||||||||
T Consensus 80 ~LN~l~~~S 88 (88)
T PF02749_consen 80 ALNFLQRLS 88 (88)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999998
No 24
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.97 E-value=1.3e-30 Score=207.66 Aligned_cols=122 Identities=38% Similarity=0.566 Sum_probs=115.0
Q ss_pred Cccccccc----CCCCEEEEEEEeeCC--eEEEcHHHHHHHHhhcC-CCcEEEEecCCCCeeecCCEEEEEEechhhHHH
Q 033026 8 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVI 80 (129)
Q Consensus 8 DlTt~~~~----~~~~~~~a~i~are~--gvvaG~~~~~~~~~~~~-~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~ 80 (129)
|+|+..+. +++.+++++|++|++ +|+||++++.++|+.++ +++.+.+.++||+.+++|+++++++|++.+++.
T Consensus 1 D~y~~~~~~~~~~~~~~~~~~~~~R~~~~~v~~Gl~~~~~~l~~l~~~~~~~~~~~~eG~~v~~g~~vl~i~G~~~~~~~ 80 (281)
T cd00516 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGTVVEPGEPLLTIEGPARELLL 80 (281)
T ss_pred ChhHHHHHhhhCCCCCEEEEEEEEecCCCEEEcCHHHHHHHHHhcCCCCceEEEECCCCCEecCCCEEEEEEEcHHHHHH
Confidence 78888776 678899999999999 99999999999999995 458889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhC----CCeEeeccCCCCCchhhhhhcC
Q 033026 81 AERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 81 ~ER~~LN~L~~~SGIAT~T~~~v~~a~----~~~i~~TRKt~PGlR~leKyAV 129 (129)
+||++||+|+|+|||||.|++++++++ ++.+++|||++||+|.++||||
T Consensus 81 ~E~~~Lnil~~~sgiAt~t~~~v~~~~~~~~~~~~~gtRk~~p~~~~~~~~A~ 133 (281)
T cd00516 81 LERVLLNLLQRLSGIATATARYVEAAKGANTKVHDFGTRKTTPGLRLLEKYAV 133 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeecCCCCcchhHHhhHHH
Confidence 999999999999999999999999985 4799999999999999999996
No 25
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.97 E-value=3.5e-30 Score=213.19 Aligned_cols=113 Identities=17% Similarity=0.216 Sum_probs=104.5
Q ss_pred CCCEEEEEEEee-CCeEEEcHHHHHHHHhhcCCCcE--EEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHHHh
Q 033026 17 LDMEVEAHFLAK-EDGIIAGIALAEMIFHEVDPSLK--VEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMS 93 (129)
Q Consensus 17 ~~~~~~a~i~ar-e~gvvaG~~~~~~~~~~~~~~~~--v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~S 93 (129)
++.+++++|++| +++|+||++++.++|+.++.+.+ ..+.++||+.+.||++|++++|++.++|.+||++||+|+|+|
T Consensus 35 ~~~~~~~~~~~R~~~~VlaGleea~~ll~~l~~~~~~~~i~a~~eG~~v~~gepvl~i~G~~~~l~~~Et~iLnlL~~~S 114 (352)
T PRK07188 35 PNNIVTMQFFQRRENAVLCGTDEVIALLKTFAKDPSKLKIRYLKDGDIINPFETVLEIEGPYENFGFLEGIIDGILARRT 114 (352)
T ss_pred CCCeEEEEEEEeCCCeEEecHHHHHHHHHHcCCCccceEEEEcCCCCEecCCCEEEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 467899999999 99999999999999999863321 457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCeEeeccCCCCCchhhhhhcC
Q 033026 94 GIATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129 (129)
Q Consensus 94 GIAT~T~~~v~~a~--~~~i~~TRKt~PGlR~leKyAV 129 (129)
||||+|++||++++ ++..++||||+||+|.++|||+
T Consensus 115 gIAT~a~r~v~aA~~~~~~~~gTRKt~p~~~~~~~~Aa 152 (352)
T PRK07188 115 SVATNAYNVVQAANEKPVIFMGDRADHYLQQAGDGYAA 152 (352)
T ss_pred HHHHHHHHHHHHhCCCCeEEEecCCCCccchhHhhHHh
Confidence 99999999999995 6889999999999999999996
No 26
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.33 E-value=1.9e-11 Score=100.56 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=86.9
Q ss_pred CCCEEEEEEEeeCC------eEEEcHHHHHHHHhhcC---------------------------CCcEEEEecCCCCeee
Q 033026 17 LDMEVEAHFLAKED------GIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHVH 63 (129)
Q Consensus 17 ~~~~~~a~i~are~------gvvaG~~~~~~~~~~~~---------------------------~~~~v~~~~~dG~~v~ 63 (129)
++.+++.+++.|.. +|++|++++.+.++.+. ..+++ +.++||+.+.
T Consensus 21 ~~~~~~~~~~~R~~p~~~~~~v~~gl~~~l~~L~~l~~t~~ei~~l~~~~~~~~~~~~~L~~~~~~v~i-~a~~EG~~v~ 99 (327)
T cd01570 21 HNKPAVFELFFRKLPFGGGYAVFAGLEELLEYLENFRFTEEDIDYLRSLGIFDEEFLDYLRGFRFTGTI-YAIPEGEVVF 99 (327)
T ss_pred CCCeEEEEEEECCCCCCCcccHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCceE-EEecCCceec
Confidence 46789999999982 56899999988777551 12566 4689999999
Q ss_pred cCCEEEEEEechhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeE--eeccCCCCC
Q 033026 64 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATI--LETRKTAPT 120 (129)
Q Consensus 64 ~g~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a~~~~i--~~TRKt~PG 120 (129)
+++++++|+|+...+...|+.+||+|+|.|+|||+++++++++.+.++ .+||..++-
T Consensus 100 ~~~pvl~IeGp~~~~~l~Et~lL~il~~~s~iATka~~~~~~~~~~~~~dFG~Rr~~s~ 158 (327)
T cd01570 100 PNEPLLTVEGPLIEAQLLETLLLNLINFQTLIATKAARVRLAAGGRPLLEFGLRRAQGP 158 (327)
T ss_pred CCcEEEEEEEcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcc
Confidence 999999999999999999999999999999999999999998876555 458877764
No 27
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=99.33 E-value=1.3e-11 Score=105.75 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=87.9
Q ss_pred CCCCEEEEEEEeeCC------eEEEcHHHHHHHHhhcC---------------------------CCcEEEEecCCCCee
Q 033026 16 PLDMEVEAHFLAKED------GIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHV 62 (129)
Q Consensus 16 ~~~~~~~a~i~are~------gvvaG~~~~~~~~~~~~---------------------------~~~~v~~~~~dG~~v 62 (129)
+.+.++..+++.|.. +|++|++++...++.+. ...+| +.++||+.+
T Consensus 29 ~~~~~~~f~~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~~ei~~l~~~~~f~~~f~~~L~~~~f~~~I-~a~pEG~~v 107 (464)
T PRK09243 29 IHNRRAVFELFFRKLPFGRGYAVFAGLERLLEYLENLRFTEEDIEYLRSLGIFDEDFLDYLRNFRFTGDV-RAVPEGELV 107 (464)
T ss_pred CCCcEEEEEEEEcCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHHhCCCCCeE-EEEeCCccc
Confidence 556678899888872 69999999998888650 01366 578999999
Q ss_pred ecCCEEEEEEechhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeE--eeccCCCCC
Q 033026 63 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATI--LETRKTAPT 120 (129)
Q Consensus 63 ~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a~~~~i--~~TRKt~PG 120 (129)
.+|+++++|+|+..++...|+.+||+|+|.|+|||+++++++++.+.++ +++|..++-
T Consensus 108 ~~~epvl~IeGp~~~~~l~Et~lL~il~~~s~iATka~r~~~~a~~~~v~dFG~Rr~~~~ 167 (464)
T PRK09243 108 FPNEPLLRVEGPLAEAQLLETLLLNIINFQTLIATKAARIVSAAGGRPLLEFGSRRAQGP 167 (464)
T ss_pred cCCcEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEecccccCCch
Confidence 9999999999999999999999999999999999999999999865444 558887764
No 28
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.15 E-value=4.2e-10 Score=92.61 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=88.5
Q ss_pred CCCEEEEEEEeeCC------eEEEcHHHHHHHHhhcCC---------------------------CcEEEEecCCCCeee
Q 033026 17 LDMEVEAHFLAKED------GIIAGIALAEMIFHEVDP---------------------------SLKVEWSLKDGDHVH 63 (129)
Q Consensus 17 ~~~~~~a~i~are~------gvvaG~~~~~~~~~~~~~---------------------------~~~v~~~~~dG~~v~ 63 (129)
++..+..+++.|.. .+++|++++.+.+..+-. .+++ +.++||+.+.
T Consensus 20 ~~~~v~~~~~~R~~~~~~~~~v~~gl~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i-~a~~eG~~~~ 98 (343)
T cd01567 20 PNTRVVFEFTFRSNPFGGDYIVFAGLEEVLKLLENLRFTEEEIEYLKKLLIFGEFFLYLLFLGKLPLEI-YALPEGTVVF 98 (343)
T ss_pred CCeEEEEEEEEcCCCCCCCeeHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCCcHHHHHHhhcCCCceEE-EEeCCccccc
Confidence 46789999999984 799999999988765411 2455 4789999999
Q ss_pred cCCEEEEEEechhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC--------------CeEeeccCCCCC
Q 033026 64 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHP--------------ATILETRKTAPT 120 (129)
Q Consensus 64 ~g~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a~~--------------~~i~~TRKt~PG 120 (129)
+++++++|+|+..+....|+.+||+++++|++||.+++.++++.. +..++||+++|.
T Consensus 99 ~~~~~i~IeG~~~~~~~~Et~lL~i~~~~t~~at~~~~~~~~a~~~~~~~~~~~~~~~~~~dFGtRr~~s~ 169 (343)
T cd01567 99 PKEPLLTIEGPWPEAGLLETPLLAIWNEATSIATKAARKKLAAGGLLETKDNLEELGFKLHDFGTRRRHSP 169 (343)
T ss_pred CCCeEEEEEechHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccccccCCCeEEecCCCCcCCh
Confidence 999999999999999999999999999999999999999998843 456789999984
No 29
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=98.93 E-value=1.4e-08 Score=86.79 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=84.5
Q ss_pred CCEEEEEEEeeC------CeEEEcHHHHHHHHhhcC---------------------------CCcEEEEecCCCCeeec
Q 033026 18 DMEVEAHFLAKE------DGIIAGIALAEMIFHEVD---------------------------PSLKVEWSLKDGDHVHK 64 (129)
Q Consensus 18 ~~~~~a~i~are------~gvvaG~~~~~~~~~~~~---------------------------~~~~v~~~~~dG~~v~~ 64 (129)
+.++..+++.|. ..|++|++.+...++.+. ..++|. .++||+.+.+
T Consensus 22 ~~~~~fe~~~R~~p~~~~~~v~~GL~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I~-A~~EG~~v~~ 100 (443)
T TIGR01513 22 NQPAVFEVFFRKLPFGRGYAVFAGLEDLLEFLENFRFDAEDIEYLASLGIFDDAFLDYLREFRFSGTVR-ALPEGSLVFP 100 (443)
T ss_pred CceEEEEEEECCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHhCCCCcEEE-EecCCccccC
Confidence 446899999988 347799999988777630 124553 5899999999
Q ss_pred CCEEEEEEechhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeE--eeccCCCC
Q 033026 65 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATI--LETRKTAP 119 (129)
Q Consensus 65 g~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a~~~~i--~~TRKt~P 119 (129)
++++++|+|+..+....|..+||++.+.|.|||++++++.++.+.++ ++||..++
T Consensus 101 ~ep~l~Iegp~~~~~llEt~lL~~i~~~s~iATka~r~~~aa~~~~l~dFG~Rr~~~ 157 (443)
T TIGR01513 101 NEPLLQVEGPLIEAQLLETLVLNIINFQTLIATKAARIVLAAGGKPLLEFGLRRAQG 157 (443)
T ss_pred CcEEEEEEEchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCCCCc
Confidence 99999999999999999999999999999999999999998876566 45888776
No 30
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=98.88 E-value=2.4e-08 Score=85.45 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=82.9
Q ss_pred CCEEEEEEEeeC------CeEEEcHHHHHHHHhhcCC---------------------------CcEEEEecCCCCeeec
Q 033026 18 DMEVEAHFLAKE------DGIIAGIALAEMIFHEVDP---------------------------SLKVEWSLKDGDHVHK 64 (129)
Q Consensus 18 ~~~~~a~i~are------~gvvaG~~~~~~~~~~~~~---------------------------~~~v~~~~~dG~~v~~ 64 (129)
+.++..+++.|. ..|++|++++.+.++.+.- ..+| +.++||+.|.|
T Consensus 25 ~~~~~fe~~~R~~p~~~~~~v~aGl~~~l~~L~~~~ft~eei~yl~~~~~f~~~f~~~L~~~~~~~~I-~A~~EG~~v~~ 103 (443)
T PRK12484 25 SAPATFSLFYRKLPDGRGFLIAAGLADVVEFLEAFRFDEQDLRYLRGLNQFSEEFLAWLAGLRFTGDV-RAVPEGTVVFP 103 (443)
T ss_pred CCeEEEEEEECCCCCCCceehHHHHHHHHHHHhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCceE-EEEeCCeeecC
Confidence 446889999888 3569999999888876520 0155 46789999999
Q ss_pred CCEEEEEEechhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCeEe--eccCCC
Q 033026 65 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATIL--ETRKTA 118 (129)
Q Consensus 65 g~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a~~~~i~--~TRKt~ 118 (129)
++++++|+|+..+....|..+||+|.+.|.|||++++++.++.+..+. ++|..+
T Consensus 104 ~ep~l~Iegp~~e~~llET~lL~il~~~s~iATka~ri~~aa~~~~l~dFG~Rr~~ 159 (443)
T PRK12484 104 NEPLLEVTAPLIEAQLVETFLLNQINHQSLIASKAARCVLAAAGRPVVDFGARRAH 159 (443)
T ss_pred CcEEEEEEEchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCC
Confidence 999999999999999999999999999999999999999988665554 477655
No 31
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=98.84 E-value=3.4e-08 Score=83.68 Aligned_cols=101 Identities=18% Similarity=0.277 Sum_probs=87.4
Q ss_pred CEEEEEEEeeCC------eEEEcHHHHHHHHhhcC-------------------------CCcEEEEecCCCCeeecCCE
Q 033026 19 MEVEAHFLAKED------GIIAGIALAEMIFHEVD-------------------------PSLKVEWSLKDGDHVHKGLQ 67 (129)
Q Consensus 19 ~~~~a~i~are~------gvvaG~~~~~~~~~~~~-------------------------~~~~v~~~~~dG~~v~~g~~ 67 (129)
..+..+++.|.. .++||++++.+.++.+. -.+++ +.+++|+.+.|.|+
T Consensus 36 ~~v~~e~~~R~~p~~~~~~~~~gl~~~l~~l~~l~fs~ee~~~L~~~~~~~~~fl~~L~~f~~~i-~a~~eg~~~~~~ep 114 (405)
T COG1488 36 VTVVFEFFFRKLPFLGGYAVFAGLEEVLELLENLRFSEEEIAYLRSLPFFKPDFLNYLRRFPLDI-YAVPEGTVVFPNEP 114 (405)
T ss_pred cEEEEEEEecCCcccchHHHHHHHHHHHHHHhhcCCCHHHHHHHhhcccccHHHHHHHhhCCCce-EEEeccccccCCCc
Confidence 588999999986 78899999999999831 01444 37999999999999
Q ss_pred EEEEEechhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-CCCeE--eeccCCCCC
Q 033026 68 FGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA-HPATI--LETRKTAPT 120 (129)
Q Consensus 68 i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a-~~~~i--~~TRKt~PG 120 (129)
+++++|++.+....|..+||++.+.|.|||+++++++++ .+.++ ++||..+|-
T Consensus 115 ~l~i~G~~~e~~l~Et~lL~ii~~~~~iatka~r~~~~a~~~~~v~dFGtRr~~~~ 170 (405)
T COG1488 115 VLRIEGPYLETILLETPLLGIINEASLIATKAARVKDAAGKGFPVLDFGTRRRHSA 170 (405)
T ss_pred eEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEeccCcccccc
Confidence 999999999999999999999999999999999999999 46555 558988876
No 32
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=98.38 E-value=3.5e-06 Score=72.62 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=52.4
Q ss_pred cEEEEecCCCCeeecCCEEEEEEechhhHH----HHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGRAHSIV----IAERVVLNFMQRMSGIATLTRAMADLAH 107 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll----~~ER~~LN~L~~~SGIAT~T~~~v~~a~ 107 (129)
++| +.++||+.|.+++++++|+|+..+.. ..|..+||++.+.|.|||.+++++.++.
T Consensus 98 ~~I-~AvpEGtvv~~~~Pll~V~~~~~e~~wL~~~lET~lL~~i~~~s~vAT~A~r~~~~~~ 158 (463)
T PRK09198 98 LRI-KAVPEGSVVPVHNVLMTIENTDPEFFWLPNYLETLLLRNVWYPSTVATISWEYKQLIR 158 (463)
T ss_pred eEE-EEecCCceecCCCCEEEEEeCcHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 47999999999999999999999988 6999999999999999999999999874
No 33
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=98.18 E-value=9.3e-06 Score=69.04 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=53.1
Q ss_pred cEEEEecCCCCeeecCCEEEEEEechhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGRAHSI----VIAERVVLNFMQRMSGIATLTRAMADLAH 107 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~a~~l----l~~ER~~LN~L~~~SGIAT~T~~~v~~a~ 107 (129)
++| +.++||+.|.++++|++|+|+..+. -..|..+||.+.+.|.|||.++++++++.
T Consensus 96 ~~I-~AvpEGtvv~~~~Pll~Ve~t~~e~~Wl~~~lET~lL~~iw~~s~vAT~A~r~k~~~~ 156 (407)
T cd01569 96 IEI-RAVPEGTVVPTKNVLMTVENTDPDFFWLTNYLETILLRNVWYPSTVATISREYKKILR 156 (407)
T ss_pred eEE-EEecCCceecCCCCEEEEEecchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 4899999999999999999999999 88999999999999999999999999984
No 34
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=98.06 E-value=2.3e-05 Score=67.69 Aligned_cols=57 Identities=19% Similarity=0.224 Sum_probs=51.4
Q ss_pred cEEEEecCCCCeeecCCEEEEEEechhhHH----HHHHHHHHHHHHHhHHHHHHHHHHHHhC
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGRAHSIV----IAERVVLNFMQRMSGIATLTRAMADLAH 107 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll----~~ER~~LN~L~~~SGIAT~T~~~v~~a~ 107 (129)
++| +.++||+.|.|+++|++|+|+..++. ..|..+||++.+.|.|||.++++++++.
T Consensus 101 ~~I-~AvpEGtvvf~~~Pll~Ve~~~~~f~w~~~~lET~lL~~i~~~s~vAT~A~r~~~~~~ 161 (470)
T PHA02594 101 IEV-RAVPEGTVVPVKVPVLTIENTHPDFFWLAGYLETVILRGVWYPSTVATLSRECKKILK 161 (470)
T ss_pred ceE-EEecCCceecCCCCEEEEEeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 58999999999999999999987555 7999999999999999999999999973
No 35
>PLN02885 nicotinate phosphoribosyltransferase
Probab=97.90 E-value=0.00013 Score=64.18 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=77.1
Q ss_pred CCEEEEEEEeeC------CeEEEcHHHHHHHHhhc-----------------------------CC-CcEEEEecCCCCe
Q 033026 18 DMEVEAHFLAKE------DGIIAGIALAEMIFHEV-----------------------------DP-SLKVEWSLKDGDH 61 (129)
Q Consensus 18 ~~~~~a~i~are------~gvvaG~~~~~~~~~~~-----------------------------~~-~~~v~~~~~dG~~ 61 (129)
+..+..+++.|. -.|++|++.+.+.++.+ +. .++| +.++||+.
T Consensus 33 ~~~avf~~f~R~~p~~~~~~v~aGL~~~l~~L~~l~Ft~edi~yL~~~~~~~f~~~Fl~yL~~~~~~~V~I-~A~~EG~l 111 (545)
T PLN02885 33 LDRAVFDLFFRKNPFGGEYTVFAGLEECLRFIANFKFTDDDIDFLRSVMPSGCEDAFFDYLRGLDCSDVEV-YAIPEGSV 111 (545)
T ss_pred CceEEEEEEecCCCCCCcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhccccCCHHHHHHHHhCCCCCceE-EecCCCcE
Confidence 455777777776 24578988776655433 11 2344 34799999
Q ss_pred eecCCEEEEEEechhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC-CCeE--eeccCC
Q 033026 62 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH-PATI--LETRKT 117 (129)
Q Consensus 62 v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a~-~~~i--~~TRKt 117 (129)
|.|++++++|+|+....-..|..+||++.+.|.|||.+++++.++. +..+ +++|..
T Consensus 112 vf~~eP~i~IeGp~~~~~LlEt~LL~iI~~~s~iAT~aar~~~aa~~~~~v~eFG~RRa 170 (545)
T PLN02885 112 VFPRVPLMRIEGPLAVVQLLETTFLTLVNYASLVATNAARHRLVAGKSKVLLEFGLRRA 170 (545)
T ss_pred ecCCCceEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEECCCccC
Confidence 9999999999999999999999999999999999999999999984 3444 557766
No 36
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=97.13 E-value=0.0027 Score=53.64 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=75.0
Q ss_pred CCEEEEEEEeeC-----CeEEEcHHHHHHHHhhcCC----------Cc------------EEEEecCCCCeeec----CC
Q 033026 18 DMEVEAHFLAKE-----DGIIAGIALAEMIFHEVDP----------SL------------KVEWSLKDGDHVHK----GL 66 (129)
Q Consensus 18 ~~~~~a~i~are-----~gvvaG~~~~~~~~~~~~~----------~~------------~v~~~~~dG~~v~~----g~ 66 (129)
+.+++.+++.|. .+.++|++.....+..+.- .+ .++ +-++|..+.+ |+
T Consensus 23 ~~~a~f~f~~R~~p~~~~~~~~gl~~~i~~l~~l~ft~~el~yL~~~~~~~~~~fl~~L~~fr-f~~e~~~v~~~~~~~~ 101 (377)
T cd01401 23 DVQVTYEFTNRSPEDFLEEAAEALREQIDHLANLRFSEEELAYLRRSLPFLKPDYLDYLELFR-LNPEEVVVRLDTGKGQ 101 (377)
T ss_pred CCeEEEEEEECCCCCcchhHHHHHHHHHHHHHhCCCCHHHHHHHHhccCCCCHHHHHHHhcCC-CCcCeeEEecCCCCCe
Confidence 457888888887 2456677666555543310 00 111 2368888887 99
Q ss_pred EEEEEEechhhHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHh-----CCCeE--eeccCCCC
Q 033026 67 QFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLA-----HPATI--LETRKTAP 119 (129)
Q Consensus 67 ~i~~i~G~a~~ll~~ER~~LN~L~~~---------------SGIAT~T~~~v~~a-----~~~~i--~~TRKt~P 119 (129)
++++|+|+..+....|-.+||+++++ +=|||++++++.++ .+.++ ++||..++
T Consensus 102 ~~i~i~Gp~~~~~L~Et~lL~iise~~~~~~~~~~~~~~~~~~~atKa~r~~~~a~~~~~~~~~~~eFGtRRr~~ 176 (377)
T cd01401 102 LDIRISGPWKDTILYEVPLLAIVSEVYFRFRDADWDYEEQLEKLEEKLERLLEEAKRRDLNGFRFSDFGTRRRFS 176 (377)
T ss_pred EEEEEEEeHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHhhcccCCCCeEEEecccccCC
Confidence 99999999999999999999999984 45999999999988 45555 45888877
No 37
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=96.09 E-value=0.055 Score=46.19 Aligned_cols=54 Identities=17% Similarity=0.125 Sum_probs=44.0
Q ss_pred CCEEEEEEechhhHHHHHHHHHHHHHH-----HhH----------HHHHHHHHHHH--hCCCeE--eeccCCC
Q 033026 65 GLQFGKVSGRAHSIVIAERVVLNFMQR-----MSG----------IATLTRAMADL--AHPATI--LETRKTA 118 (129)
Q Consensus 65 g~~i~~i~G~a~~ll~~ER~~LN~L~~-----~SG----------IAT~T~~~v~~--a~~~~i--~~TRKt~ 118 (129)
|+++++|+|+..+....|-.+||++++ .|+ |||++.+++.+ +.+..+ ++||..+
T Consensus 106 ~~~~i~I~Gp~~~~~L~Et~lL~iise~~~~~~~~~~~~~~a~~~iatKa~r~~~a~~~~~~~~~eFGtRR~~ 178 (400)
T PRK05321 106 GQLDIRIEGPWLETILWEVPLLAIISELYFRARSPEVLYAQAKRRLWEKIELLKALPDLSGFKIADFGTRRRF 178 (400)
T ss_pred CeEEEEEEEeHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHhccccCCCeEEEecccccc
Confidence 899999999999999999999999998 544 89999999776 123444 5587665
No 38
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=94.74 E-value=0.033 Score=33.71 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.6
Q ss_pred EEEecCCCCeeecCCEEEEEEechh
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRAH 76 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a~ 76 (129)
.++++++|+.|++||+|+++.-+..
T Consensus 14 ~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 14 ESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred EEEEecCCCEEcCCCEEEEECcHHH
Confidence 4579999999999999999987643
No 39
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=94.52 E-value=0.2 Score=42.79 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=69.1
Q ss_pred CCCEEEEEEEeeC-----CeEEEcHHHHHHHHhhcCC---------C-cE-E---------EEec-CCCCee----ecCC
Q 033026 17 LDMEVEAHFLAKE-----DGIIAGIALAEMIFHEVDP---------S-LK-V---------EWSL-KDGDHV----HKGL 66 (129)
Q Consensus 17 ~~~~~~a~i~are-----~gvvaG~~~~~~~~~~~~~---------~-~~-v---------~~~~-~dG~~v----~~g~ 66 (129)
++.++..+++.|. .++++|++.....+..+.- + +. + .+.. ++|+.. +.|+
T Consensus 24 ~~~~~~f~f~~R~~p~~~~~~~~gl~~~i~~l~~l~ft~eel~yL~~~~~~~~~~fl~~L~~frf~~e~~v~i~~~~eg~ 103 (394)
T TIGR01514 24 PDVHVTYEFICRSSQLFLKEAAEALREEISALGNLRFTDDEIEYLKQELPYLKSDYIDYLRNFRFHPEEQVEVGIDDKGK 103 (394)
T ss_pred CCceEEEEEEECCCCCcchhHHHHHHHHHHHHHHCCCCHHHHHHHHhccCCCCHHHHHHHHhCCCCCCceeEEeeCCCCc
Confidence 3667888899988 3467777777666554320 0 00 0 0011 123222 2489
Q ss_pred EEEEEEechhhHHHHHHHHHHHHHHH---------------hHHHHHHHHHHHHhC-------CCeE--eeccCC
Q 033026 67 QFGKVSGRAHSIVIAERVVLNFMQRM---------------SGIATLTRAMADLAH-------PATI--LETRKT 117 (129)
Q Consensus 67 ~i~~i~G~a~~ll~~ER~~LN~L~~~---------------SGIAT~T~~~v~~a~-------~~~i--~~TRKt 117 (129)
++++|+|+-.+-...|-.+||+++++ +-|||++.+++.++. +.++ ++||..
T Consensus 104 ~~i~i~Gp~~~~~L~EtplLaiine~~~~~~~~~~~~~~~~~~iatKa~rl~~~a~~~~~~~~~~~~~eFGtRRr 178 (394)
T TIGR01514 104 LDIRISGSWRDTILYEIPLLAIISELYFRFRDAEADYEQQLEVLESKLDQLKAEIAAETMFENGFRFSEFGTRRR 178 (394)
T ss_pred EEEEEEeehHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHhhcccccCCCCeeEeeccccc
Confidence 99999999999999999999999973 669999999998772 4555 447755
No 40
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=93.37 E-value=0.24 Score=32.65 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=28.7
Q ss_pred CCCcEEEEecCCCCeeecCCEEEEEEechhh-HHHHHHH
Q 033026 47 DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS-IVIAERV 84 (129)
Q Consensus 47 ~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~-ll~~ER~ 84 (129)
|+..-+.++++=||.|++||+|+++..+-+. +-.++..
T Consensus 29 D~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~~~~a~~~ 67 (75)
T PF07831_consen 29 DPAVGIELHKKVGDRVEKGDPLATIYANDEARLEEAVER 67 (75)
T ss_dssp -TT-EEEESS-TTSEEBTTSEEEEEEESSSSHHHHHHHH
T ss_pred CcCcCeEecCcCcCEECCCCeEEEEEcCChHHHHHHHHH
Confidence 4567788999999999999999999999887 4444333
No 41
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=92.66 E-value=0.12 Score=33.42 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=20.4
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+|++++|+.|++||+|++++-.
T Consensus 18 ~~~~v~~G~~V~~G~~l~~iet~ 40 (74)
T PF00364_consen 18 TKWLVEEGDKVKKGDPLAEIETM 40 (74)
T ss_dssp EEESSSTTEEESTTSEEEEEESS
T ss_pred eEEEECCCCEEEcCceEEEEEcC
Confidence 46999999999999999999753
No 42
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=92.36 E-value=0.87 Score=40.02 Aligned_cols=64 Identities=22% Similarity=0.169 Sum_probs=49.8
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhhcC----CCcEEEEecCCCCeeecCCEEEEEEechhhHHHH
Q 033026 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 81 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~~~----~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ 81 (129)
..+.+..+.|.++|.|..++. +..+...+| +..-++++++-|+.|++||+|+++..+....+..
T Consensus 409 ~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~~~~l~~ 478 (493)
T TIGR02645 409 AGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAESEGELDY 478 (493)
T ss_pred CCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCCHHHHHH
Confidence 446788999999999998653 344555554 4566888999999999999999999776665544
No 43
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=92.16 E-value=0.21 Score=31.94 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.4
Q ss_pred cEEEEecCCCCeeecCCEEEEEEech
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
.-++|++++|+.|++||+|++++-.-
T Consensus 12 ~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 12 SVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEecc
Confidence 45689999999999999999988653
No 44
>PRK06748 hypothetical protein; Validated
Probab=91.93 E-value=0.24 Score=33.50 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=21.6
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-++|++++|+.|++||+|++++-
T Consensus 14 ~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 14 KVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEc
Confidence 446899999999999999999987
No 45
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=89.76 E-value=2.3 Score=37.53 Aligned_cols=64 Identities=19% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhhcC----CCcEEEEecCCCCeeecCCEEEEEEechhhHHHH
Q 033026 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 81 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~~~----~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ 81 (129)
..+.+..+.|.++|.|..++. +-.+...+| +..-+.++++=|+.|++||+++++..+.+..+..
T Consensus 410 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~~~~l~~ 479 (500)
T TIGR03327 410 VGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAESEWRLEN 479 (500)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCCHHHHHH
Confidence 456788999999999999653 334444444 4566888999999999999999999766555443
No 46
>PRK04350 thymidine phosphorylase; Provisional
Probab=89.52 E-value=1.6 Score=38.32 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=49.3
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhhcC----CCcEEEEecCCCCeeecCCEEEEEEechhhHHHH
Q 033026 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD----PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 81 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~~~----~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ 81 (129)
..+.+..+.|.++|.|..++. +-.+...+| +..-+.++++=|+.|++||+++++..+.+..+..
T Consensus 401 ~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~~~~l~~ 470 (490)
T PRK04350 401 LGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAESEGELDY 470 (490)
T ss_pred CCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCCHHHHHH
Confidence 446788999999999999653 344445554 4567888999999999999999999776655443
No 47
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=88.46 E-value=4.2 Score=35.29 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhh-----------cCCCcEEEEecCCCCeeecCCEEEEEEechhhH
Q 033026 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 78 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~-----------~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~l 78 (129)
..+.+..+.|+++|.|.-++. +-.+... .|+..-++++++-|+.|++||+|+++..+-+..
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~~~~ 409 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADDEER 409 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCCHHH
Confidence 456788999999999987543 3333322 235677889999999999999999999655444
No 48
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=88.22 E-value=5.4 Score=34.55 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=45.9
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhhcC-----------CCcEEEEecCCCCeeecCCEEEEEEechhhH
Q 033026 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 78 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~~~-----------~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~l 78 (129)
..+.+..+.+.++|.|..++- +-.+...+| +..-+.++++-|+.|++||+|+++..+...+
T Consensus 331 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~~~~~ 404 (434)
T PRK06078 331 QAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYANRENV 404 (434)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCChHHH
Confidence 456788999999999998653 333344443 3566888999999999999999999554443
No 49
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=87.76 E-value=0.87 Score=28.78 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=19.4
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-+.|+++.|+.|++|++|++++-.
T Consensus 11 ~i~~~~v~~G~~V~~g~~l~~ve~~ 35 (70)
T PRK08225 11 NVWKIVVKVGDTVEEGQDVVILESM 35 (70)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEcC
Confidence 3456788889999999999887653
No 50
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=87.51 E-value=2.8 Score=36.01 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=45.3
Q ss_pred CCEEEEEEEeeCCeEEEcHHH--HHHHHhh-----------cCCCcEEEEecCCCCeeecCCEEEEEEechhh
Q 033026 18 DMEVEAHFLAKEDGIIAGIAL--AEMIFHE-----------VDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHS 77 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~--~~~~~~~-----------~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ 77 (129)
..+.+.++.|.++|.|..++. +-.+... .|+..-+.++++-|+.|++||+|+++..+-+.
T Consensus 329 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~~~ 401 (405)
T TIGR02644 329 KAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSDPI 401 (405)
T ss_pred CCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCCHh
Confidence 456788999999999997543 2233332 34566788999999999999999999966444
No 51
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=87.16 E-value=0.63 Score=39.65 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.8
Q ss_pred EEEEecCCCCeeecCCEEEEEEec
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-++|+++.||.|++||+|++++-+
T Consensus 19 I~~W~~k~GD~V~~gd~L~eVeTD 42 (404)
T COG0508 19 IVEWLKKVGDKVKEGDVLVEVETD 42 (404)
T ss_pred EEEEecCCCCeecCCCeeEEEEcC
Confidence 478999999999999999999865
No 52
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=86.55 E-value=0.97 Score=27.33 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEecCCCCeeecCCEEEEEEe
Q 033026 53 EWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G 73 (129)
+|+++.|+.+++|+.+++++.
T Consensus 12 ~~~v~~G~~v~~g~~l~~i~~ 32 (67)
T cd06850 12 KVLVKEGDKVEAGQPLAVLEA 32 (67)
T ss_pred EEEeCCCCEECCCCEEEEEEc
Confidence 589999999999999999985
No 53
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=86.12 E-value=5.6 Score=34.56 Aligned_cols=62 Identities=21% Similarity=0.217 Sum_probs=46.2
Q ss_pred CCEEEEEEEeeCCeEEEcHHHHH--HHHh-----------hcCCCcEEEEecCCCCeeecCCEEEEEEechhhHH
Q 033026 18 DMEVEAHFLAKEDGIIAGIALAE--MIFH-----------EVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIV 79 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~~~--~~~~-----------~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll 79 (129)
..+.+..+.|+++|.|.-++.-. .+.- ..|+..-++++++=|+.|++||+|+++..+-+..+
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~~~~~~ 409 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAADESDA 409 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECCCHHHH
Confidence 44678899999999999865432 2221 22346678889999999999999999997655443
No 54
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=85.36 E-value=2.8 Score=36.34 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=48.1
Q ss_pred CCEEEEEEEeeCCeEEEcHHHH--HHHHhhcC-----------CCcEEEEecCCCCeeecCCEEEEEEechhhHHHH
Q 033026 18 DMEVEAHFLAKEDGIIAGIALA--EMIFHEVD-----------PSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 81 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~~--~~~~~~~~-----------~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ 81 (129)
..+.+..+.|.++|+|..++.. -.+...+| +..-+..+++-|+.|++||+|+++.-..+..+..
T Consensus 332 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~~~~~~~~ 408 (435)
T COG0213 332 VAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAESEEILDE 408 (435)
T ss_pred cCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecCCccchHH
Confidence 4567899999999999986533 23333333 3456788999999999999999999966655543
No 55
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=85.12 E-value=0.74 Score=40.12 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.4
Q ss_pred EEEEecCCCCeeecCCEEEEEEech
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
-+.|..++||.+.+||+|+|||=+-
T Consensus 55 IvsW~kKeGdkls~GDvl~EVETDK 79 (470)
T KOG0557|consen 55 IVSWKKKEGDKLSAGDVLLEVETDK 79 (470)
T ss_pred eeeEeeccCCccCCCceEEEEeccc
Confidence 4789999999999999999998653
No 56
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=84.95 E-value=1.1 Score=35.71 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=16.2
Q ss_pred EEEEecCCCCeeecCCEEEEEEec
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-++|++++|+.|++||+|++++..
T Consensus 19 ~~~~~~~~g~~v~~~~~~~~~e~~ 42 (371)
T PRK14875 19 VAGWLVQEGDEVEKGDELLDVETD 42 (371)
T ss_pred EEEEEcCCCCEeCCCCEEEEEEec
Confidence 356677777777777777776654
No 57
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=83.05 E-value=0.73 Score=39.09 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=48.2
Q ss_pred EecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 033026 54 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 106 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a 106 (129)
..+.+|+.+-++-++++|+|+-+.....|-.+||+++++|=.+|.+.+..+..
T Consensus 99 ~aIsegSvvf~k~pli~i~Gp~~~~~l~E~plLnLvs~a~~~~~da~~~r~~~ 151 (420)
T KOG2511|consen 99 EAISEGSVVFEKKPLIRIEGPWKVTILYEIPLLNLVSEAYFKFVDADWHREVQ 151 (420)
T ss_pred hhcccCceeccCCceEEEecchhheeeeechHHHHhhhHHheeeccccchhcc
Confidence 36889999999999999999999999999999999999999999888776654
No 58
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=82.63 E-value=1.6 Score=27.52 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.0
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-.++++++|+.+.+|++|++++
T Consensus 49 v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 49 VKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred EEEEEecCCCEECCCCEEEEEC
Confidence 3467899999999999999874
No 59
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=82.07 E-value=1.9 Score=31.45 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=19.7
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-+..+++.||.|++||+|+.++-
T Consensus 80 tv~~~~V~vGd~V~~Gq~l~IiEA 103 (140)
T COG0511 80 TVYKPFVEVGDTVKAGQTLAIIEA 103 (140)
T ss_pred EEEEEeeccCCEEcCCCEEEEEEe
Confidence 345578999999999999998873
No 60
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=81.57 E-value=4.5 Score=24.27 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.3
Q ss_pred EEecCCCCeeecCCEEEEE
Q 033026 53 EWSLKDGDHVHKGLQFGKV 71 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i 71 (129)
..++++|+.+++|+.++++
T Consensus 49 ~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 49 EILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred EEEECCCCEECCCCEEEEC
Confidence 4678899999999999874
No 61
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=81.57 E-value=3 Score=26.16 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.3
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-.+|++++|+.+++|+++++++..
T Consensus 15 ~~~~~~v~~G~~v~~g~~l~~ie~~ 39 (73)
T cd06663 15 TVVKWLKKVGDKVKKGDVLAEIEAM 39 (73)
T ss_pred EEEEEEcCCcCEECCCCEEEEEEeC
Confidence 4456899999999999999998764
No 62
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=80.55 E-value=2 Score=37.02 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=17.7
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-++|++++||.|++||+|++++-
T Consensus 60 ~I~~w~v~~Gd~V~~Gd~L~~vEt 83 (418)
T PTZ00144 60 TVVEWKKKVGDYVKEDEVICIIET 83 (418)
T ss_pred EEEEEEeCCCCEeCCCCEEEEEEE
Confidence 346778888888888887777754
No 63
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=80.41 E-value=1.1 Score=35.03 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=17.4
Q ss_pred cEEEEecCCCCeeecCCEEEEEEech
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
.--+.+++||+.|++||+|+++.-..
T Consensus 11 ~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 11 IVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEEEEccCcCEEeCCCEEEEEEeec
Confidence 33456899999999999999999654
No 64
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=79.98 E-value=2.5 Score=31.49 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=21.8
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-++|++++||.|++||.++.++..
T Consensus 94 ~I~~~~V~~Gd~V~~Gq~l~~iEam 118 (153)
T PRK05641 94 KILRILVREGQQVKVGQGLLILEAM 118 (153)
T ss_pred EEEEEEeCCCCEEcCCCEEEEEeec
Confidence 4568999999999999999999754
No 65
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=78.49 E-value=2.6 Score=30.30 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-++.++++||+|++||.|+++.
T Consensus 81 gF~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 81 GFTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 4677899999999999999985
No 66
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=78.38 E-value=3.1 Score=30.27 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=20.8
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-.+|++++|+.|++||+|+.++-
T Consensus 71 ~V~~i~V~~Gd~V~~Gq~L~~lEa 94 (130)
T PRK06549 71 TILKVLVAVGDQVTENQPLLILEA 94 (130)
T ss_pred EEEEEEeCCCCEECCCCEEEEEec
Confidence 445789999999999999999974
No 67
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=77.99 E-value=2.4 Score=36.99 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=17.1
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-++|++++||.|++||+|++++-
T Consensus 107 ~I~~w~v~~GD~V~~Gq~L~~VEt 130 (463)
T PLN02226 107 TLATFLKKPGERVQADEAIAQIET 130 (463)
T ss_pred EEEEEEeCCCCEecCCCEEEEEEe
Confidence 345677888888777777777753
No 68
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=77.46 E-value=3 Score=32.90 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=18.9
Q ss_pred EEEEecCCCCeeecCCEEEEEEechh
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVSGRAH 76 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~a~ 76 (129)
.+++++++|+.|++|++|+++.-+.-
T Consensus 31 ~v~~~v~~G~~V~kG~~L~~ld~~~~ 56 (328)
T PF12700_consen 31 RVSVNVKEGDKVKKGQVLAELDSSDL 56 (328)
T ss_dssp EEEE-S-TTSEEETT-EEEEEE-HHH
T ss_pred EEEEEeCCcCEECCCCEEEEEEChhh
Confidence 44889999999999999999987643
No 69
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=77.04 E-value=9.4 Score=30.65 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEecCCCCeeecCCEEEEEEech
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
.++++++|+.|++|++|+++....
T Consensus 28 ~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 28 KKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred EEEEccCCCEecCCcEEEEecCcH
Confidence 467899999999999999999864
No 70
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=76.01 E-value=3.3 Score=29.84 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.4
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-+++++++||.|++||+|+++.
T Consensus 81 gF~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 81 GFTSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred ceEEEecCCCEEcCCCEEEEEc
Confidence 4677899999999999999874
No 71
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=75.44 E-value=9.2 Score=25.70 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=26.7
Q ss_pred EEEcH-HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033026 32 IIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 32 vvaG~-~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+--|+ +++.+. +|+ +..-++.+.|+.+++|+.+++++..
T Consensus 16 ~~lGlt~~~~~~---lG~-i~~i~~~~~G~~v~~g~~l~~iEs~ 55 (96)
T cd06848 16 ATVGITDYAQDL---LGD-IVFVELPEVGTEVKKGDPFGSVESV 55 (96)
T ss_pred EEEeeCHHHHhh---CCC-EEEEEecCCCCEEeCCCEEEEEEEc
Confidence 34453 344443 442 4444577779999999999999976
No 72
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=74.53 E-value=3.9 Score=29.79 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.2
Q ss_pred CcEEEEecCCCCeeecCCEEEEEE
Q 033026 49 SLKVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
+.-.+.++++|+.|+.||+|++|+
T Consensus 116 G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 116 GVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred cEEEEEEecCCCccCCCCEEEEec
Confidence 344566889999999999999986
No 73
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=74.35 E-value=3.8 Score=31.08 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.6
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-++.++++||.|++||+|+++.
T Consensus 103 gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 103 GFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred ceEEEecCCCEEeCCCEEEEEc
Confidence 4677899999999999999985
No 74
>PRK07051 hypothetical protein; Validated
Probab=74.30 E-value=4.8 Score=26.25 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=18.3
Q ss_pred EEEecCCCCeeecCCEEEEEE
Q 033026 52 VEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.++++++|+.|++|++|+++.
T Consensus 59 ~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 59 VEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEEcCCcCEECCCCEEEEEe
Confidence 357899999999999999874
No 75
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=73.36 E-value=16 Score=30.59 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=40.5
Q ss_pred EEEeeCCeEEEcHHH--HHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEE
Q 033026 24 HFLAKEDGIIAGIAL--AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 24 ~i~are~gvvaG~~~--~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.+.++..|.+..++. ..++.+..+ +.++..++-|+.|.+|++++++.
T Consensus 197 ~i~a~~~GYvq~Id~~~L~~~a~~~~--~~i~l~~~~G~fV~~g~pl~~v~ 245 (371)
T PF10011_consen 197 PIRAPRSGYVQAIDYDRLVELAEEHD--VVIRLEVRPGDFVVEGTPLARVW 245 (371)
T ss_pred EEecCCCcEEEEecHHHHHHHHHHCC--cEEEEEeCCCCeECCCCeEEEEe
Confidence 499999999999866 556666665 89999999999999999999995
No 76
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=72.40 E-value=3.5 Score=30.04 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=17.3
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-++++++.|+.|++||+|+++.
T Consensus 85 gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 85 GFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp TEEESS-TTSEE-TTEEEEEE-
T ss_pred ceEEEEeCCCEEECCCEEEEEc
Confidence 4778999999999999999984
No 77
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=72.33 E-value=4.5 Score=34.49 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=11.9
Q ss_pred EecCCCCeeecCCEEEEEE
Q 033026 54 WSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~ 72 (129)
+++++|+.++.|++|++++
T Consensus 57 i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 57 ILFKEGDTVESGQVLAILE 75 (403)
T ss_pred EEeCCCCEeCCCCEEEEEe
Confidence 3556666666666666665
No 78
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=71.38 E-value=4.5 Score=34.52 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=12.7
Q ss_pred EecCCCCeeecCCEEEEEEe
Q 033026 54 WSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G 73 (129)
+++++|+.|..|++|++++-
T Consensus 59 i~v~~G~~V~~G~~l~~i~~ 78 (407)
T PRK05704 59 ILAEEGDTVTVGQVLGRIDE 78 (407)
T ss_pred EEeCCCCEeCCCCEEEEEec
Confidence 45566666666666666653
No 79
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=70.47 E-value=4.6 Score=25.87 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=26.2
Q ss_pred CEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEE
Q 033026 19 MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 71 (129)
Q Consensus 19 ~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i 71 (129)
.+....+.|..+|++ .++++++|+.+..|++|++|
T Consensus 40 ~K~~~~v~a~~~G~i------------------~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 40 MKMEMEVEAPVSGII------------------KEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp SSEEEEEEBSSSEEE------------------EEESSTTTEEEETTSEEEEE
T ss_pred CccceEEECCCCEEE------------------EEEEECCCCEECCCCEEEEC
Confidence 345667777777643 24578899999999999976
No 80
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=69.97 E-value=4.3 Score=32.57 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.8
Q ss_pred EEEecCCCCeeecCCEEEEEEech
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
.++++++|+.|++||+|+++.-+.
T Consensus 54 ~~i~v~~G~~V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 54 IEVNVDDTDYVKQGDVLVRLDPTN 77 (334)
T ss_pred EEEEeCCCCEEcCCCEEEEECchH
Confidence 356899999999999999998654
No 81
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=69.79 E-value=5.1 Score=30.19 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-++.++++||.|++||.|+++.
T Consensus 88 gF~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 88 GFESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred ceEEEeeCCCEEccCCEEEEEC
Confidence 4677999999999999999984
No 82
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=69.08 E-value=4.8 Score=33.74 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=20.7
Q ss_pred EEEecCCCCeeecCCEEEEEEech
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
.++++++|+.|++||+|+++.-+-
T Consensus 73 ~~v~V~~Gd~VkkGqvL~~LD~~~ 96 (390)
T PRK15136 73 TKVWADNTDFVKEGDVLVTLDPTD 96 (390)
T ss_pred EEEEcCCCCEECCCCEEEEECcHH
Confidence 356899999999999999998653
No 83
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.90 E-value=4.3 Score=33.28 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.1
Q ss_pred cEEEEecCCCCeeecCCEEEEEEechh
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGRAH 76 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~a~ 76 (129)
.-.++++++|+.|++|++|+++.-+.-
T Consensus 53 ~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 53 IVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred EEEEEEeCCCCEecCCCeEEEEccchh
Confidence 444789999999999999999987754
No 84
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=68.48 E-value=5.3 Score=32.33 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEecCCCCeeecCCEEEEEEech
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
.++++++|+.|++||+|+++..+.
T Consensus 55 ~~i~v~~Gd~V~kG~~L~~ld~~~ 78 (331)
T PRK03598 55 ASLAVDEGDAVKAGQVLGELDAAP 78 (331)
T ss_pred EEEEcCCCCEEcCCCEEEEEChHH
Confidence 457899999999999999998873
No 85
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=68.33 E-value=4.7 Score=32.74 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.0
Q ss_pred EEEecCCCCeeecCCEEEEEEech
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
.++++++|+.|++||+|+++.-+-
T Consensus 59 ~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 59 TQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEEeCCcCEEcCCCEEEEECcHH
Confidence 456899999999999999998754
No 86
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=67.86 E-value=4.5 Score=33.08 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.9
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033026 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.|+++.||.|++||+|+.|+-.
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAM 238 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAM 238 (274)
T ss_pred cceeCCCCEecCCCEEEEEEee
Confidence 5899999999999999999864
No 87
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=66.17 E-value=6.7 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+.++++|+.|++||+|+++.-.
T Consensus 60 ~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 60 VELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEEeCCCCEEcCCCEEEEECcH
Confidence 45689999999999999999965
No 88
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=66.04 E-value=5.2 Score=34.12 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=22.5
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEech
Q 033026 49 SLKVEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
++--+.+++||+.|++||+|+++.-..
T Consensus 68 G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 68 NAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred cEEEEEEcCCCCEecCCCEEEEECchH
Confidence 454567999999999999999997653
No 89
>PRK07051 hypothetical protein; Validated
Probab=64.41 E-value=7.6 Score=25.28 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=19.3
Q ss_pred EecCCCCeeecCCEEEEEEec
Q 033026 54 WSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+++++|+.|++|+.+++++..
T Consensus 24 ~~v~~Gd~V~~g~~l~~ve~~ 44 (80)
T PRK07051 24 PYVEVGDAVAAGDVVGLIEVM 44 (80)
T ss_pred CccCCCCEECCCCEEEEEEEc
Confidence 689999999999999999875
No 90
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=64.09 E-value=6.5 Score=34.77 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=18.8
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-++|+++.||.|++|+.|++++
T Consensus 132 i~~w~v~~Gd~V~~g~~l~~ve 153 (546)
T TIGR01348 132 VIEVLVKVGDTVSADQSLITLE 153 (546)
T ss_pred EeEEeeCCCCcccCCCeeEEEE
Confidence 4789999999999998888875
No 91
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=64.02 E-value=6.4 Score=35.36 Aligned_cols=23 Identities=26% Similarity=0.169 Sum_probs=18.2
Q ss_pred cEEEEecCCCCeeecCCEEEEEE
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.-++|++++||.|++||+|++++
T Consensus 220 ~v~~w~v~~Gd~V~~g~~l~~ve 242 (633)
T PRK11854 220 EVTEVMVKVGDKVEAEQSLITVE 242 (633)
T ss_pred EEEEEEecCCCeecCCCceEEEE
Confidence 34778898888888888888764
No 92
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=63.88 E-value=10 Score=23.96 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=17.9
Q ss_pred EEEecCCCCeeecCCEEEEEE
Q 033026 52 VEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.+.++++|+.+++|++|+++.
T Consensus 51 ~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 51 SKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEEEeCCCCEECCCCEEEEEC
Confidence 356799999999999999873
No 93
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=63.31 E-value=6.6 Score=29.14 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=18.2
Q ss_pred EecCCCCeeecCCEEEEEEe
Q 033026 54 WSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G 73 (129)
|+++.|+.|++|++|+.++-
T Consensus 101 ~~v~~Gd~V~~Gq~l~iiEa 120 (156)
T TIGR00531 101 PFVEVGDKVKKGQIVCIVEA 120 (156)
T ss_pred ccccCCCEeCCCCEEEEEEe
Confidence 68999999999999999874
No 94
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=63.27 E-value=7.7 Score=34.67 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=17.2
Q ss_pred cEEEEecCCCCeeecCCEEEEEE
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.-++|++++||.|++||.|++++
T Consensus 151 ~i~~w~v~~Gd~V~~g~~l~~vE 173 (590)
T TIGR02927 151 TITQWLKAVGDKIEVDEPILEVS 173 (590)
T ss_pred EEEEEEeCCCCEecCCCEeEEEE
Confidence 34678888888888887777665
No 95
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=62.80 E-value=35 Score=28.16 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=45.0
Q ss_pred CCEEEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033026 18 DMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
..+++..++|..+|++.==.+...-++.++ .+.+ ..++++..|++|+.|+.++=-
T Consensus 76 ~~~Grvnl~A~~~Gll~vd~~~l~~~N~~~-~i~~-at~~~~~~v~~g~~vA~~rii 130 (312)
T cd03522 76 PAEGRVNLFAERAGLLKVDVEALDALNAID-AITL-ATLHNNTPVEAGQMVATVKII 130 (312)
T ss_pred CccceEEEEECCCeeEEEcHHHHHhhhCCC-CEEE-EEcCCCeEeCCCCEEEEEEEe
Confidence 457999999999999987777777777777 3554 589999999999999887643
No 96
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=62.78 E-value=7.8 Score=34.50 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=19.4
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-++|++++|+.|++||++++++-
T Consensus 128 ~I~~W~vkeGD~V~~g~~l~eVET 151 (539)
T PLN02744 128 NIARWLKKEGDKVSPGEVLCEVET 151 (539)
T ss_pred EEEEEEecCCCEecCCCeeEEEee
Confidence 357889999999999988888763
No 97
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=62.60 E-value=8.6 Score=34.41 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEe
Q 033026 49 SLKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
+.-++|++++|+.|++||+|+.++-
T Consensus 526 G~v~~~~V~~Gd~V~~G~~l~~iEa 550 (582)
T TIGR01108 526 GSIVKVKVSEGQTVAEGEVLLILEA 550 (582)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEe
Confidence 3457899999999999999999874
No 98
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=62.14 E-value=7.9 Score=30.43 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEecCCCCeeecCCEEEEEEech
Q 033026 53 EWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
++++++|+.|++|++|+++.-+.
T Consensus 39 ~i~v~~G~~V~kG~~L~~l~~~~ 61 (322)
T TIGR01730 39 KISVREGQKVKKGQVLARLDDDD 61 (322)
T ss_pred EEEcCCCCEEcCCCEEEEECCHH
Confidence 45789999999999999998764
No 99
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=61.56 E-value=9.7 Score=34.28 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=22.8
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEec
Q 033026 49 SLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+.-++|++++|+.|++||+|++++-.
T Consensus 534 G~V~~~~V~~Gd~V~~Gq~L~~iEam 559 (596)
T PRK14042 534 GSIIAIHVSAGDEVKAGQAVLVIEAM 559 (596)
T ss_pred eEEEEEEeCCCCEeCCCCEEEEEEec
Confidence 45678999999999999999999864
No 100
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=60.81 E-value=7.9 Score=31.37 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=27.5
Q ss_pred cEEEEecCCCCeeecCCEEEE------------EEechhhHHHHHH
Q 033026 50 LKVEWSLKDGDHVHKGLQFGK------------VSGRAHSIVIAER 83 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~------------i~G~a~~ll~~ER 83 (129)
+.....+++||.|++||+|++ +.|...+|-++||
T Consensus 39 ~~Pkm~VkeGD~Vk~Gq~LF~dK~~p~v~ftsPvsG~V~~I~RG~r 84 (257)
T PF05896_consen 39 MKPKMLVKEGDRVKAGQPLFEDKKNPGVKFTSPVSGTVKAINRGER 84 (257)
T ss_pred CCccEEeccCCEEeCCCeeEeeCCCCCcEEecCCCeEEEEEecCCC
Confidence 677789999999999999987 4566667777776
No 101
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=60.25 E-value=9.6 Score=32.02 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.2
Q ss_pred EEEecCCCCeeecCCEEEEEEechh
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRAH 76 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a~ 76 (129)
.+.++++|+.|++|++|+++.-+..
T Consensus 70 ~~i~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 70 IDLDVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred EEEECCCcCEECCCCEEEEECcHHH
Confidence 3468999999999999999987643
No 102
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=59.44 E-value=8.9 Score=25.54 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=19.7
Q ss_pred EechhhHHHHHHHHHHHHHHHhH
Q 033026 72 SGRAHSIVIAERVVLNFMQRMSG 94 (129)
Q Consensus 72 ~G~a~~ll~~ER~~LN~L~~~SG 94 (129)
+..+..|-++|++++++|..++.
T Consensus 47 ~~~~~~i~SGW~~if~il~~aa~ 69 (86)
T PF09324_consen 47 QSRGENIKSGWKVIFSILRAAAK 69 (86)
T ss_pred HHhHHHHHhccHHHHHHHHHHHh
Confidence 44567899999999999998876
No 103
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=59.36 E-value=8.8 Score=28.41 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=18.9
Q ss_pred EecCCCCeeecCCEEEEEEec
Q 033026 54 WSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G~ 74 (129)
|+++.|+.|++||+|+.++-.
T Consensus 100 ~~v~~Gd~V~~Gq~l~~iEam 120 (155)
T PRK06302 100 PFVEVGDTVKEGQTLCIIEAM 120 (155)
T ss_pred cccCCCCEeCCCCEEEEEEec
Confidence 689999999999999999863
No 104
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=58.72 E-value=11 Score=32.15 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=13.4
Q ss_pred EecCCCCeeecCCEEEEEE
Q 033026 54 WSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~ 72 (129)
+++++|+.++.|++|++++
T Consensus 55 i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 55 INFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEeCCCCEeCCCCEEEEEe
Confidence 4567777777777777764
No 105
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=58.61 E-value=16 Score=25.44 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=14.3
Q ss_pred eeecCCEEEEEEechh
Q 033026 61 HVHKGLQFGKVSGRAH 76 (129)
Q Consensus 61 ~v~~g~~i~~i~G~a~ 76 (129)
+|++|++|+|+.|...
T Consensus 75 ~v~~G~iifEi~~~~~ 90 (112)
T cd01433 75 RVKPGQILFEVRGVPE 90 (112)
T ss_pred EECCCCEEEEEeCcCc
Confidence 4889999999999975
No 106
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=58.45 E-value=28 Score=28.85 Aligned_cols=22 Identities=14% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033026 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
++++++|+.|++||+|+++.-.
T Consensus 76 ~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 76 ARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEECCCCCEEcCCCEEEEECCH
Confidence 4689999999999999999544
No 107
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=57.83 E-value=11 Score=33.15 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=20.1
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-++|++++||.|++|+.|++++.+
T Consensus 134 ~i~~w~v~~Gd~V~~g~~l~~vetd 158 (547)
T PRK11855 134 EVIEWLVKVGDTVEEDQSLITVETD 158 (547)
T ss_pred EEeEEEeCCCCeecCCCeeEEEEec
Confidence 4567889999999888888887655
No 108
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=57.65 E-value=9.8 Score=31.31 Aligned_cols=22 Identities=27% Similarity=0.370 Sum_probs=19.5
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033026 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
++++++|+.|++||+|+++.-.
T Consensus 74 ~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 74 TLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred EEEcCCCCEEcCCCEEEEECcH
Confidence 4689999999999999999754
No 109
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=57.54 E-value=10 Score=32.01 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEecCCCCeeecCCEEEEEEech
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
.++++++|+.|++||+|+++.-+.
T Consensus 99 ~~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 99 MALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred EEEECCCCCEecCCCEEEEECcHH
Confidence 356899999999999999997653
No 110
>PRK06748 hypothetical protein; Validated
Probab=56.79 E-value=15 Score=24.62 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=17.9
Q ss_pred EEecCCCCeeecCCEEEEEE
Q 033026 53 EWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~ 72 (129)
++++++|+.++.|++|+.++
T Consensus 55 ~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 55 SLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred EEEeCCCCEECCCCEEEEEE
Confidence 45789999999999999995
No 111
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=55.65 E-value=12 Score=31.25 Aligned_cols=23 Identities=13% Similarity=0.440 Sum_probs=20.1
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+.++++|+.|++|++|+++.-.
T Consensus 77 ~~v~v~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 77 LKRNFKEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEcCCCCEecCCCEEEEECCH
Confidence 45689999999999999999754
No 112
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=54.35 E-value=12 Score=31.09 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
...++.+|+.|++||+|+++.-+
T Consensus 73 ~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 73 IKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEEEcCCcCEecCCCEEEEECcH
Confidence 34689999999999999999854
No 113
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=53.58 E-value=16 Score=30.76 Aligned_cols=21 Identities=43% Similarity=0.786 Sum_probs=11.1
Q ss_pred EEEecCCCCeeecCCEEEEEE
Q 033026 52 VEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~ 72 (129)
+.|++++|+.+..|+++++++
T Consensus 20 ~~w~v~~Gd~V~~g~~l~~ve 40 (411)
T PRK11856 20 VEWLVKVGDTVKEGQPLAEVE 40 (411)
T ss_pred EEEEeCCcCEeCCCCEEEEEE
Confidence 345555555555555555543
No 114
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=52.99 E-value=15 Score=32.90 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=22.4
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEec
Q 033026 49 SLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+.-++|++++|+.|++||+|+.++..
T Consensus 533 G~I~~~~V~~Gd~V~~Gd~l~~iEam 558 (593)
T PRK14040 533 GNIFKVIVTEGQTVAEGDVLLILEAM 558 (593)
T ss_pred EEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 34578999999999999999998754
No 115
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=52.64 E-value=16 Score=32.96 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=11.8
Q ss_pred EecCCCCeeecCCEEEEEEec
Q 033026 54 WSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+++++|+.|+.|++|++++.+
T Consensus 57 i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 57 IKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred EEeCCCCEEeCCCEEEEEecc
Confidence 455555555555555555543
No 116
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=52.26 E-value=25 Score=20.33 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=18.8
Q ss_pred EEEecCCCCeeecCCEEEEEEe
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G 73 (129)
..|++.+|+.+..|+.++.++-
T Consensus 18 ~~~~~~~g~~v~~~~~l~~~~~ 39 (74)
T cd06849 18 VEWLVKEGDSVEEGDVLAEVET 39 (74)
T ss_pred EEEEECCCCEEcCCCEEEEEEe
Confidence 4678999999999999988854
No 117
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=52.20 E-value=40 Score=26.08 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.8
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-.+.++++|+.|++|++++++.-
T Consensus 76 ~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 76 IVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred EEEEEEccCCCeecCCCEEEEECC
Confidence 556779999999999999999997
No 118
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=52.05 E-value=13 Score=25.79 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.4
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
...+..++.||.|+.||.|.+..|.
T Consensus 40 ~~~~p~V~~Gd~V~~GQ~Ia~~~~~ 64 (101)
T PF13375_consen 40 APAEPVVKVGDKVKKGQLIAEAEGF 64 (101)
T ss_pred CcceEEEcCCCEEcCCCEEEecCCC
Confidence 4456789999999999999999874
No 119
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=51.03 E-value=19 Score=26.58 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.7
Q ss_pred cEEEEecCCCCeeecCCEEEEEE
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.-.++++++|+.|..|+.|++++
T Consensus 133 ~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 133 VVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEEEcCCCCEeCCCCEEEEeC
Confidence 44568999999999999999874
No 120
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=50.94 E-value=16 Score=31.46 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=12.2
Q ss_pred EecCCCCe-eecCCEEEEEE
Q 033026 54 WSLKDGDH-VHKGLQFGKVS 72 (129)
Q Consensus 54 ~~~~dG~~-v~~g~~i~~i~ 72 (129)
+++++|+. ++.|+++++++
T Consensus 56 i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 56 ILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred EEECCCCEEecCCCEEEEEe
Confidence 45666666 66666666664
No 121
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=50.93 E-value=21 Score=26.48 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=19.5
Q ss_pred cEEEEecCCCCeeecCCEEEEEE
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.-.++++++|+.|..|+.|++++
T Consensus 134 ~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 134 KVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEEEeCCCCEECCCCEEEEEC
Confidence 33467999999999999999874
No 122
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=49.73 E-value=20 Score=31.59 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.0
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-++|++++|+.|+.|++|++++..
T Consensus 17 ~i~~~~v~~Gd~V~~g~~l~~iEt~ 41 (547)
T PRK11855 17 EVIEWLVKEGDTVEEDQPLVTVETD 41 (547)
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEec
Confidence 3467899999999999999998655
No 123
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=49.40 E-value=35 Score=28.83 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=18.8
Q ss_pred Ee-cCCCCeeecCCEEEEEEec
Q 033026 54 WS-LKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 54 ~~-~~dG~~v~~g~~i~~i~G~ 74 (129)
.+ +.+|+.|++||+|+++.-+
T Consensus 137 l~~~~~Gd~VkkGq~La~l~sp 158 (409)
T PRK09783 137 VYPLTVGDKVQKGTPLLDLTIP 158 (409)
T ss_pred EEecCCCCEECCCCEEEEEeCH
Confidence 45 8999999999999999866
No 124
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=48.39 E-value=21 Score=30.14 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.1
Q ss_pred cEEEEecCCCCeeecCCEEEEEEech
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
.-.++.+.|.+.|++||+|++|.=..
T Consensus 63 ~V~eV~V~dnq~Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 63 RVTEVNVKDNQLVKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEEEecCCCEecCCCeEEEECcHH
Confidence 45677999999999999999997543
No 125
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=48.17 E-value=19 Score=34.96 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=21.7
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-++|++++||.|++||+|++++-.
T Consensus 1142 ~v~~~~v~~Gd~V~~Gd~l~~iEsm 1166 (1201)
T TIGR02712 1142 NFWKVLVEVGDRVEAGQPLVILEAM 1166 (1201)
T ss_pred EEEEEEeCCCCEECCCCEEEEEEec
Confidence 3468999999999999999998763
No 126
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=47.50 E-value=20 Score=31.15 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=18.2
Q ss_pred EEEEecCCCCeeecCCEEEEEEec
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-.+|++++|+.+++|+++++++-+
T Consensus 19 i~~w~v~~Gd~V~~gd~l~~iETd 42 (464)
T PRK11892 19 LAKWLKKEGDKVKSGDVIAEIETD 42 (464)
T ss_pred EEEEEecCCCEecCCCeEEEEEec
Confidence 457788888888888888887544
No 127
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=46.67 E-value=24 Score=31.54 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEecCCCCeeecCCEEEEEEech
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
-++|++++|+.++.|++|++++-+-
T Consensus 19 i~~w~v~~Gd~V~~g~~l~~vEtdK 43 (590)
T TIGR02927 19 ITQWLKAEGDTVELDEPLLEVSTDK 43 (590)
T ss_pred EEEEEECCCCEEeCCCeEEEEEecc
Confidence 4678999999999999998885443
No 128
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=45.67 E-value=24 Score=31.27 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=15.9
Q ss_pred EEEEecCCCCeeecCCEEEEEEec
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-+.|++++|+.|+.|++|++++..
T Consensus 16 i~~~~v~~Gd~V~~G~~l~~vet~ 39 (546)
T TIGR01348 16 VIEVLVKPGDKVEAGQSLITLESD 39 (546)
T ss_pred EEEEEeCCCCEEcCCCEEEEEEcc
Confidence 346677777777777777766543
No 129
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=45.36 E-value=58 Score=22.84 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=26.3
Q ss_pred eEEEcH-HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033026 31 GIIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 31 gvvaG~-~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+--|+ +++...|... ..++ +.+.|+.|++|+++++++..
T Consensus 16 ~~~vGiT~~aq~~lG~i---~~v~-lp~~G~~V~~g~~i~~IEs~ 56 (110)
T TIGR03077 16 VVRLGLTSRMQENLGNI---LHID-LPSVGSSCKEGEVLVILESS 56 (110)
T ss_pred EEEEeeCHHHHHhcCCE---EEEE-CCCCCCEEcCCCEEEEEEec
Confidence 345564 4454444332 3443 45779999999999999864
No 130
>PRK01202 glycine cleavage system protein H; Provisional
Probab=45.11 E-value=54 Score=23.39 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=27.7
Q ss_pred eEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033026 31 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 31 gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-+.-|+.... .+.+|+-..++ +.+.|+.|++|+++++|++.
T Consensus 23 ~~~vGit~~a--~~~lG~i~~v~-lp~~G~~v~~g~~~~~IEs~ 63 (127)
T PRK01202 23 TATVGITDHA--QEQLGDIVFVE-LPEVGDEVKAGETFGVVESV 63 (127)
T ss_pred EEEEeeCHHH--HhhcCCeeEEE-cCCCCCEecCCCEEEEEEEc
Confidence 3566754433 34555323444 45779999999999999975
No 131
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=45.00 E-value=4 Score=34.99 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=21.5
Q ss_pred cEEEEecCCCCeeecCCEEEE------------EEechhhHHHHHHH
Q 033026 50 LKVEWSLKDGDHVHKGLQFGK------------VSGRAHSIVIAERV 84 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~------------i~G~a~~ll~~ER~ 84 (129)
+.....+++||.|++|+++++ +.|...+|+++||-
T Consensus 39 mrp~mkV~~gD~VkkGq~LfEdKknpgv~~Tap~sG~V~aI~RG~KR 85 (447)
T COG1726 39 MRPSMKVREGDAVKKGQVLFEDKKNPGVVFTAPVSGKVTAIHRGEKR 85 (447)
T ss_pred CCCcceeccCCeeeccceeeecccCCCeEEeccCCceEEEeecccce
Confidence 344456678888888877766 34555555555543
No 132
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=44.74 E-value=26 Score=33.90 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.6
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEec
Q 033026 49 SLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+.-++|++++|+.|++||+|++++-.
T Consensus 1083 G~v~~~~v~~Gd~V~~Gd~L~~iEam 1108 (1143)
T TIGR01235 1083 GVIIEVKVSSGQAVNKGDPLVVLEAM 1108 (1143)
T ss_pred cEEEEEEeCCCCEeCCCCEEEEEEec
Confidence 44578999999999999999999863
No 133
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=44.34 E-value=21 Score=32.03 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-++.++++||+|++||+++++.
T Consensus 545 gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 545 GFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred CeEEEecCcCEEcCCCEEEEec
Confidence 4677899999999999999985
No 134
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=43.76 E-value=26 Score=25.37 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=17.4
Q ss_pred EEecCCCCeeecCCEEEEE
Q 033026 53 EWSLKDGDHVHKGLQFGKV 71 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i 71 (129)
++++++|+.+++|+.|+++
T Consensus 111 ~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 111 AIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred EEEeCCCCEeCCCCEEEEe
Confidence 5789999999999999987
No 135
>PRK00624 glycine cleavage system protein H; Provisional
Probab=42.38 E-value=43 Score=23.68 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=26.4
Q ss_pred eEEEcH-HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033026 31 GIIAGI-ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 31 gvvaG~-~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+.-|+ +++...+..+ ..++ +.+.|+.|++|+.+++|+..
T Consensus 18 ~~~vGiT~~a~~~lG~i---~~v~-lp~~G~~V~~g~~i~~IEs~ 58 (114)
T PRK00624 18 IVRLGLTSKMQENLGNI---LHID-LPSVGSFCKEGEVLVILESS 58 (114)
T ss_pred EEEEeeCHHHHHhcCCE---EEEE-CCCCCCEEeCCCEEEEEEec
Confidence 356664 4444444332 3443 45779999999999999864
No 136
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=42.07 E-value=23 Score=32.08 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.4
Q ss_pred EEEEecCCCCeeecCCEEEEEE
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
-++.++++||.|++||+++++.
T Consensus 561 gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 561 FFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred CceEEecCCCEEcCCCEEEEEc
Confidence 3667899999999999999985
No 137
>PF02843 GARS_C: Phosphoribosylglycinamide synthetase, C domain; InterPro: IPR020560 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the C-domain, which is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005480 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 2YW2_B 2YYA_A 3MJF_A 2IP4_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A 2YRW_A 2YS7_A ....
Probab=41.69 E-value=37 Score=22.86 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=31.5
Q ss_pred cCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHH
Q 033026 56 LKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 91 (129)
Q Consensus 56 ~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~ 91 (129)
..||+.+..|..++.+.|...+|..+.+.+.+-++.
T Consensus 41 ~~~~~l~t~GGRvl~v~~~g~tl~eA~~~ay~~i~~ 76 (93)
T PF02843_consen 41 KEDGQLVTNGGRVLTVVALGDTLEEAREKAYEAIEK 76 (93)
T ss_dssp EETTEEEE-SSEEEEEEEEESSHHHHHHHHHHHHTT
T ss_pred eeCCEEEecCCeEEEEEEEcCCHHHHHHHHHHHHhc
Confidence 559999999999999999999999999988887764
No 138
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=40.71 E-value=26 Score=31.97 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.8
Q ss_pred EEEecCCCCeeecCCEEEEEE
Q 033026 52 VEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~ 72 (129)
++.++++||.|++||+|+++.
T Consensus 582 F~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 582 FKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred ceEEecCCCEEcCCCEEEEEc
Confidence 567899999999999999985
No 139
>PF13437 HlyD_3: HlyD family secretion protein
Probab=40.56 E-value=45 Score=21.91 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=18.4
Q ss_pred EEecCCCCeeecCCEEEEEEec
Q 033026 53 EWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.+.+..|+.+.+|+.|+++.-.
T Consensus 12 ~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 12 SINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred EEeCCCCCEECCCCEEEEEEcc
Confidence 4566889999999999998765
No 140
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=40.49 E-value=39 Score=25.07 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.0
Q ss_pred EEEEecCCCCeeecCCEEEEE
Q 033026 51 KVEWSLKDGDHVHKGLQFGKV 71 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i 71 (129)
-..+++++|+.+.+|+.|+++
T Consensus 132 V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 132 VKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred EEEEEcCCCCEECCCCEEEEe
Confidence 345689999999999999986
No 141
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=39.34 E-value=39 Score=24.30 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=12.4
Q ss_pred eeecCCEEEEEEec
Q 033026 61 HVHKGLQFGKVSGR 74 (129)
Q Consensus 61 ~v~~g~~i~~i~G~ 74 (129)
.|++|++|+|+.|.
T Consensus 95 rV~~G~ilfEi~~~ 108 (126)
T TIGR01164 95 VVKPGKILFEIAGV 108 (126)
T ss_pred EECCCCEEEEEeCC
Confidence 58999999999993
No 142
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=38.93 E-value=36 Score=30.57 Aligned_cols=23 Identities=26% Similarity=0.305 Sum_probs=20.3
Q ss_pred cEEEEecCCCCeeecCCEEEEEE
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.-+.+.+++|+.|++|++|++++
T Consensus 532 ~v~~~~V~~Gd~V~~Gq~L~~ie 554 (592)
T PRK09282 532 TVVKVKVKEGDKVKAGDTVLVLE 554 (592)
T ss_pred EEEEEEeCCCCEECCCCEEEEEe
Confidence 34678999999999999999986
No 143
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=36.62 E-value=38 Score=22.10 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=14.7
Q ss_pred ecCCCCeeecCCEEEEEEe
Q 033026 55 SLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 55 ~~~dG~~v~~g~~i~~i~G 73 (129)
.++.|+.|++|+.|..+-.
T Consensus 56 ~v~~G~~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 56 SVKVGDRVKAGQVIGTVGN 74 (96)
T ss_dssp SS-TTSEE-TTCEEEEEBS
T ss_pred cceecccccCCCEEEecCC
Confidence 4889999999999998864
No 144
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=35.86 E-value=47 Score=30.23 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEe
Q 033026 49 SLKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
+.-+.+.+++|+.|.+||+|+.++.
T Consensus 584 G~v~~v~V~~G~~V~~G~~lvvlEA 608 (645)
T COG4770 584 GTVVSVAVKEGQEVSAGDLLVVLEA 608 (645)
T ss_pred ceEEEEEecCCCEecCCCeEEEeEe
Confidence 5667889999999999999998875
No 145
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....
Probab=35.68 E-value=48 Score=23.86 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=29.5
Q ss_pred EEEEeeCCeEEEc--HHHHHHHHhh----cC-------CCcEEEEecCCC--------------CeeecCCEEEEEEech
Q 033026 23 AHFLAKEDGIIAG--IALAEMIFHE----VD-------PSLKVEWSLKDG--------------DHVHKGLQFGKVSGRA 75 (129)
Q Consensus 23 a~i~are~gvvaG--~~~~~~~~~~----~~-------~~~~v~~~~~dG--------------~~v~~g~~i~~i~G~a 75 (129)
.-+.+.+.|-+.- +|.+...+.. -+ |..-++ ..+.+ ..|++|++|+|+.|+.
T Consensus 31 ~gl~a~~~g~l~~~qlEa~R~~i~r~lkk~~~~~i~v~p~~~vT-kk~~~~RMG~GKG~~~~~~a~V~~G~iifEi~~~v 109 (133)
T PF00252_consen 31 YGLKALEPGRLTSNQLEAARIAINRYLKKNGKLWIRVFPHHPVT-KKPLETRMGKGKGKIDHWVARVKPGQIIFEIGGKV 109 (133)
T ss_dssp EEEEESS-EEEEHHHHHHHHHHHHHHHHHTSTEEESSSCEEEEE-E-SSSSSSSSSSCEEEEEEEEESTTEEEEEEESGS
T ss_pred eeEEEeeeeeechhhhHHHHHHHHHHhhhheeEEEEeeeeeeee-eehhhhhhccCCCCccEEEEEECCCcEEEEECCcC
Confidence 5678888888776 5555554442 11 211121 12222 2489999999998844
No 146
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=35.53 E-value=41 Score=24.16 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 033026 80 IAERVVLNFMQRMSGIATL 98 (129)
Q Consensus 80 ~~ER~~LN~L~~~SGIAT~ 98 (129)
..|.++.++|+|+|+||..
T Consensus 84 ~v~~~l~~YL~RlS~Ia~~ 102 (115)
T cd07298 84 SVTQMLMAYLSRLSAIAGN 102 (115)
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 3489999999999999964
No 147
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=35.19 E-value=93 Score=21.92 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=21.9
Q ss_pred EEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033026 32 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 32 vvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+.-|+.... .+.+|+=..++ +.+.|+.+++|+.++.+++.
T Consensus 18 ~~vGit~~a--~~~lG~i~~v~-lp~~g~~~~~g~~~~~ies~ 57 (122)
T PF01597_consen 18 VRVGITDFA--QDELGDIVYVE-LPKVGTKLKKGDPFASIESS 57 (122)
T ss_dssp EEEEE-HHH--HHHH-SEEEEE--B-TT-EE-TTSEEEEEEES
T ss_pred EEEEECchH--hhcCCceEEEE-EccCCCEEecCCcEEEEEEC
Confidence 445644333 33444313444 57789999999999999975
No 148
>CHL00044 rpl16 ribosomal protein L16
Probab=34.17 E-value=66 Score=23.41 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.9
Q ss_pred eeecCCEEEEEEechh
Q 033026 61 HVHKGLQFGKVSGRAH 76 (129)
Q Consensus 61 ~v~~g~~i~~i~G~a~ 76 (129)
.|++|++|+|+.|..+
T Consensus 96 ~V~~G~ilfEi~g~~~ 111 (135)
T CHL00044 96 VVKPGRILYEMGGVSE 111 (135)
T ss_pred EECCCcEEEEEeCCCH
Confidence 4789999999999765
No 149
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=33.97 E-value=69 Score=25.01 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=26.3
Q ss_pred EEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEech
Q 033026 22 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 22 ~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
...+.|+.+|+|. ...+..|+.+.+|++|+++..+.
T Consensus 134 ~~~i~AP~~G~V~------------------~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 134 YTEIRAPFDGTIG------------------RRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred cCEEECCCCcEEE------------------EEEcCCCceeCCCCcEEEEEcCC
Confidence 3456666666662 34677899999999999997654
No 150
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=33.84 E-value=36 Score=25.36 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=36.5
Q ss_pred CCEEEEEEEeeCCeEEEc--HHHHHHHHhhc---CCCcEEEEe-------------cCCC--------CeeecCCEEEEE
Q 033026 18 DMEVEAHFLAKEDGIIAG--IALAEMIFHEV---DPSLKVEWS-------------LKDG--------DHVHKGLQFGKV 71 (129)
Q Consensus 18 ~~~~~a~i~are~gvvaG--~~~~~~~~~~~---~~~~~v~~~-------------~~dG--------~~v~~g~~i~~i 71 (129)
...++.-+.+.|.+=+.- +|.|....... +.++.+..+ +.+| ..|+||++|+++
T Consensus 30 ~~fg~~gL~a~e~~~It~~qiEAARia~~R~lkr~g~~wIRvfP~~~~~~kp~e~Rmg~GkG~pegwaArVkpG~vlfei 109 (146)
T COG0197 30 VFFGEYGLVALEPGQITARQIEAARIAANRYLKRGGGLWIRVFPDKPLTEKPGEDRMGKGKGKPEGWAARVKPGRVLFEI 109 (146)
T ss_pred ccceEEEEEEcccceecHHHHHHHHHHHHHHhhhcCCEEEEEcCCceeeeCCCcccccCCCCCccEEEEEecCCcEEEEE
Confidence 445677788888766654 44444444321 112333221 1122 258999999999
Q ss_pred EechhhH
Q 033026 72 SGRAHSI 78 (129)
Q Consensus 72 ~G~a~~l 78 (129)
.|..+++
T Consensus 110 ~g~~e~~ 116 (146)
T COG0197 110 AGVPEEL 116 (146)
T ss_pred ecCcHHH
Confidence 9999887
No 151
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=33.21 E-value=37 Score=32.38 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.0
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEe
Q 033026 49 SLKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
+.-+++.++.|+.|++||+++.++.
T Consensus 1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieA 1112 (1149)
T COG1038 1088 GVVVEVKVKKGDKVKKGDVLAVIEA 1112 (1149)
T ss_pred CceEEEEEccCCeecCCCeeeehhh
Confidence 5678889999999999999998763
No 152
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=32.41 E-value=56 Score=26.17 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=19.7
Q ss_pred EEEEecCCCCeeecCCEEEEEEec
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
-++..++-|+.|++||+|.++.=+
T Consensus 233 ~~~~~~~~G~~V~~G~~lg~i~dp 256 (288)
T cd06254 233 LWYPFVKAGDTVQKGALLGYVTDY 256 (288)
T ss_pred EEEEecCCCCEecCCCEEEEEECC
Confidence 356678899999999999999643
No 153
>PRK12999 pyruvate carboxylase; Reviewed
Probab=32.05 E-value=49 Score=32.09 Aligned_cols=25 Identities=24% Similarity=0.338 Sum_probs=21.5
Q ss_pred CcEEEEecCCCCeeecCCEEEEEEe
Q 033026 49 SLKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
+.-+++++++|+.|++||+|+.++-
T Consensus 1085 G~v~~i~v~~Gd~V~~G~~L~~lea 1109 (1146)
T PRK12999 1085 GSVVTVLVKEGDEVKAGDPLAVIEA 1109 (1146)
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEc
Confidence 3456789999999999999999974
No 154
>PRK15325 type III secretion system needle complex protein PrgJ; Provisional
Probab=31.75 E-value=1.5e+02 Score=19.97 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=30.9
Q ss_pred echhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 033026 73 GRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA 106 (129)
Q Consensus 73 G~a~~ll~~ER~~LN~L~~~SGIAT~T~~~v~~a 106 (129)
.+++.|+..-..+-|+=-++|=|+|.||+-|.++
T Consensus 41 snP~~Ll~lQ~~~~~Ysl~vslvSTLtrK~vsAI 74 (80)
T PRK15325 41 TDPKELAISQEMISDYNLYVSMVSTLTRKGVGAV 74 (80)
T ss_pred CCHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999876
No 155
>PRK13380 glycine cleavage system protein H; Provisional
Probab=30.21 E-value=91 Score=22.85 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=25.4
Q ss_pred EEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033026 32 IIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 32 vvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+--|+.... .+.+|.=..++ ..+.|+.|++|+.+++++..
T Consensus 31 ~~vGitd~a--q~~lG~I~~v~-lp~~G~~V~~Gd~~~~IEs~ 70 (144)
T PRK13380 31 VTVGITDYA--QTMAGDVVFVR-LKELGKKVEKGKPVATLESG 70 (144)
T ss_pred EEEecCHHH--HHhcCCEEEEE-cCCCCCEeeCCCeEEEEEEc
Confidence 566754433 23444212332 34579999999999999854
No 156
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stran
Probab=30.16 E-value=1.3e+02 Score=18.28 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=29.2
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHH
Q 033026 37 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAE 82 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~E 82 (129)
.....+-+..+ +.+... +.....+.+.+++++|+++++..|=
T Consensus 20 ~~i~~i~~~tg--a~I~i~--~~~~~~~~~r~v~I~G~~~~v~~A~ 61 (65)
T cd02396 20 STIKEIREETG--AKIRVS--KSVLPGSTERVVTISGKPSAVQKAL 61 (65)
T ss_pred HHHHHHHHHHC--CEEEEc--CCCCCCCCceEEEEEeCHHHHHHHH
Confidence 56777777776 555432 3222456789999999999887763
No 157
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=29.82 E-value=51 Score=28.48 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=20.2
Q ss_pred cEEEEecCCCCeeecCCEEEEEEe
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.-.+++++||+.|.+|+.|+.|+=
T Consensus 125 vi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 125 VITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred eeeEEecCCCCcccCCceeEEecC
Confidence 334568999999999999999875
No 158
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=29.46 E-value=67 Score=25.89 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEecCCCCeeecCCEEEEEEechhh
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRAHS 77 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a~~ 77 (129)
++..++-|+.|++||+|.+|.-+...
T Consensus 242 ~~~~~~~G~~V~~Gq~lg~I~dp~g~ 267 (293)
T cd06255 242 FEPSVPAGDTIPAGQPLGRVVDLYGA 267 (293)
T ss_pred EEEecCCCCEecCCCEEEEEECCCCC
Confidence 55678899999999999999865543
No 159
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=28.84 E-value=1.3e+02 Score=25.47 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=26.3
Q ss_pred EEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEec
Q 033026 23 AHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 23 a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
..|.|+-+|+|. +..+..|+.|.+|+.|++|...
T Consensus 210 ~~I~AP~dGvV~------------------~~~v~~G~~V~~g~~L~~I~d~ 243 (409)
T PRK09783 210 FTLKAPIDGVIT------------------AFDLRAGMNIAKDNVVAKIQGM 243 (409)
T ss_pred EEEECCCCeEEE------------------EEECCCCCEECCCCeEEEEEcC
Confidence 356677666654 4578899999999999998655
No 160
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=28.62 E-value=71 Score=25.59 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.9
Q ss_pred EEEEecCCCCeeecCCEEEEEEech
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
-++..++-|+.|++||+|.++.-+.
T Consensus 229 ~~~~~~~~Gd~V~~G~~ig~i~d~~ 253 (287)
T cd06251 229 LLRSLVKLGDKVKKGQLLATITDPF 253 (287)
T ss_pred EEEEecCCCCEECCCCEEEEEECCC
Confidence 3567888999999999999997653
No 161
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only]
Probab=27.71 E-value=2.6e+02 Score=23.41 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=39.2
Q ss_pred EcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHH
Q 033026 34 AGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQ 90 (129)
Q Consensus 34 aG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~ 90 (129)
-|-+-+.++=+..+..++++ .-.+|+. |.|.+|.|.-..|+.+.-.+||-.-
T Consensus 332 kggqri~~ir~esGA~Ikid-epleGse----drIitItGTqdQIqnAQYLlQn~Vk 383 (390)
T KOG2192|consen 332 KGGQRIKQIRHESGASIKID-EPLEGSE----DRIITITGTQDQIQNAQYLLQNSVK 383 (390)
T ss_pred ccchhhhhhhhccCceEEec-CcCCCCC----ceEEEEeccHHHHhhHHHHHHHHHH
Confidence 35577888888888545443 2356766 8999999999999999888887654
No 162
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=27.35 E-value=78 Score=25.99 Aligned_cols=23 Identities=22% Similarity=0.131 Sum_probs=19.3
Q ss_pred cEEEEecCCCCeeecCCEEEEEE
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.-.++++++|+.|..|+.|++++
T Consensus 251 tV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 251 TIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred EEEEEecCCCCEeCCCCEEEEec
Confidence 33467899999999999999884
No 163
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=27.34 E-value=77 Score=23.08 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=12.4
Q ss_pred eeecCCEEEEEEec
Q 033026 61 HVHKGLQFGKVSGR 74 (129)
Q Consensus 61 ~v~~g~~i~~i~G~ 74 (129)
+|++|++|+|+.|-
T Consensus 96 rVk~G~iifEi~~~ 109 (138)
T PRK09203 96 VVKPGRILFEIAGV 109 (138)
T ss_pred EECCCCEEEEEeCC
Confidence 58999999999993
No 164
>CHL00121 rpl27 ribosomal protein L27; Reviewed
Probab=26.62 E-value=50 Score=22.54 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.0
Q ss_pred EecCCCCeeecCCEEEEEEec
Q 033026 54 WSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+..-+|+.|.||++|++=+|.
T Consensus 23 vK~~~gq~V~~G~IivRQRGt 43 (86)
T CHL00121 23 VKRFGGEKVSAGNILIRQRGT 43 (86)
T ss_pred eEEcCCEEEcCCcEEEEcCCC
Confidence 356799999999999998885
No 165
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=26.28 E-value=63 Score=24.68 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=14.9
Q ss_pred CCeeecCCEEEEEEec
Q 033026 59 GDHVHKGLQFGKVSGR 74 (129)
Q Consensus 59 G~~v~~g~~i~~i~G~ 74 (129)
|+.|++|++|+++.-+
T Consensus 1 G~~VkkG~~L~~ld~~ 16 (265)
T TIGR00999 1 GDPVKKGQVLAVVDSP 16 (265)
T ss_pred CCcccCCCEEEEEccH
Confidence 8999999999999975
No 166
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=25.84 E-value=77 Score=25.74 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=20.0
Q ss_pred EEEEecCCCCeeecCCEEEEEEe
Q 033026 51 KVEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 51 ~v~~~~~dG~~v~~g~~i~~i~G 73 (129)
.++..++-|+.|++||+|..+.+
T Consensus 174 i~~~~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 174 IVTPTKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred EEeeccCCCCEEeCCCEEEEEcC
Confidence 45668899999999999999976
No 167
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=25.79 E-value=47 Score=19.78 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=10.6
Q ss_pred HHHHHHHHhHHH
Q 033026 85 VLNFMQRMSGIA 96 (129)
Q Consensus 85 ~LN~L~~~SGIA 96 (129)
...+|||+|||.
T Consensus 14 ~~~LlqHA~gvg 25 (43)
T PF03470_consen 14 YRELLQHASGVG 25 (43)
T ss_pred hhHHHHHHHhhC
Confidence 567899999998
No 168
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=25.25 E-value=79 Score=25.60 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.1
Q ss_pred EEEecCCCCeeecCCEEEEEEec
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
++..++-|+.|++||+|.++.=+
T Consensus 240 ~~~~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 240 FVPAKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred EEECcCCCCEECCCCEEEEEeCC
Confidence 45668889999999999999654
No 169
>TIGR02386 rpoC_TIGR DNA-directed RNA polymerase, beta' subunit, predominant form. Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain.
Probab=25.04 E-value=53 Score=32.02 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=23.8
Q ss_pred EEecCCCCeeecCCEEEEEEechhhHHH
Q 033026 53 EWSLKDGDHVHKGLQFGKVSGRAHSIVI 80 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~a~~ll~ 80 (129)
...++|||.|++||.|.+-.=+.++||.
T Consensus 967 ~l~v~~gd~V~~G~~l~~g~~~~~~il~ 994 (1140)
T TIGR02386 967 QLRVKDGDSVSAGDKLTEGSIDPHDLLR 994 (1140)
T ss_pred eEEecCCCEEccCCcccCCCCCHHHHHH
Confidence 3467899999999999987778888885
No 170
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=25.02 E-value=1.7e+02 Score=25.01 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=11.4
Q ss_pred CEEEEEEEeeCCeEEEc
Q 033026 19 MEVEAHFLAKEDGIIAG 35 (129)
Q Consensus 19 ~~~~a~i~are~gvvaG 35 (129)
.+....+-+..+|++.-
T Consensus 38 dK~~~ev~a~~~G~v~~ 54 (416)
T PLN02528 38 DKATIEITSRYKGKVAQ 54 (416)
T ss_pred CceeEEEecCCCEEEEE
Confidence 35666777777777663
No 171
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=24.70 E-value=89 Score=26.12 Aligned_cols=24 Identities=21% Similarity=0.291 Sum_probs=19.7
Q ss_pred EEEecCCCCeeecCCEEEEEEech
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
++..++-|+.|++||+|.+|.=+.
T Consensus 300 ~~~~~~~Gd~V~~G~~lg~I~d~~ 323 (359)
T cd06250 300 VVYRAAPGDWVEAGDVLAEILDPL 323 (359)
T ss_pred EEEecCCCCEecCCCEEEEEECCC
Confidence 556788899999999999986543
No 172
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=24.33 E-value=48 Score=28.82 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=20.4
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
...+..++.||.|+.||+|++.+|.
T Consensus 39 ~~~k~~Vk~GD~V~~Gq~I~~~~~~ 63 (447)
T TIGR01936 39 MRPKMKVRPGDKVKAGQPLFEDKKN 63 (447)
T ss_pred CCCceEeCcCCEEcCCCEeEecCCC
Confidence 4455789999999999999987763
No 173
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=24.22 E-value=99 Score=24.23 Aligned_cols=34 Identities=18% Similarity=0.346 Sum_probs=25.3
Q ss_pred CCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEE
Q 033026 29 EDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 29 e~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
.+.|+||+- . + -++.++-.|+..+..||.++.|.
T Consensus 115 pdav~CGv~-------r-~--GkI~fhP~Dd~vL~e~DklLvIa 148 (206)
T PF06241_consen 115 PDAVVCGVK-------R-D--GKIVFHPDDDYVLREGDKLLVIA 148 (206)
T ss_pred Ccceeeeee-------e-C--CeeEECCCCCceeecCCEEEEEe
Confidence 478889872 2 2 37778999999999999776653
No 174
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=24.18 E-value=92 Score=25.73 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=18.8
Q ss_pred EEEecCCCCeeecCCEEEEEEe
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G 73 (129)
+...++-|+.|++||+|.++.=
T Consensus 266 ~~~~v~~G~~V~~G~~lg~I~d 287 (325)
T TIGR02994 266 IEFMIDLGDPVSKGDVIARVYP 287 (325)
T ss_pred EEEecCCCCEeCCCCEEEEEEC
Confidence 3567888999999999999964
No 175
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=24.01 E-value=38 Score=21.96 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=10.0
Q ss_pred cCCCCCch-hhhhh
Q 033026 115 RKTAPTLR-LLDKW 127 (129)
Q Consensus 115 RKt~PGlR-~leKy 127 (129)
-|++|||- +||.|
T Consensus 31 Ek~LPGLGVlFE~~ 44 (65)
T TIGR03092 31 EKMLPGLGVLFEAI 44 (65)
T ss_pred hhcCCccHHHHHHH
Confidence 68999998 66654
No 176
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=23.93 E-value=88 Score=27.44 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.0
Q ss_pred cEEEEecCCCCeeecCCEEEEEEec
Q 033026 50 LKVEWSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 50 ~~v~~~~~dG~~v~~g~~i~~i~G~ 74 (129)
.-.++++++|+.|+.|++|+.++.+
T Consensus 144 ~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 144 VIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred EEEEEEeCCCCEecCCCEEEEeccC
Confidence 4457799999999999999999643
No 177
>PF01016 Ribosomal_L27: Ribosomal L27 protein; InterPro: IPR001684 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L27 is a protein from the large (50S) subunit; it is essential for ribosome function, but its exact role is unclear. It belongs to a family of ribosomal proteins, examples of which are found in bacteria, chloroplasts of plants and red algae and the mitochondria of fungi (e.g. MRP7 from yeast mitochondria). The schematic relationship between these groups of proteins is shown below. Bacterial L27 Nxxxxxxxxx Algal L27 Nxxxxxxxxx Plant L27 tttttNxxxxxxxxxxxxx Yeast MRP7 tttNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 't': transit peptide. 'N': N-terminal of mature protein. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZJQ_T 2ZJP_T 3PIP_T 3DLL_T 3PIO_T 1Y69_U 3CF5_T 2ZJR_T 1VSA_U 3PYT_W ....
Probab=23.88 E-value=53 Score=22.12 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.4
Q ss_pred EecCCCCeeecCCEEEEEEec
Q 033026 54 WSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+..-||+.|.||++|.+=+|.
T Consensus 22 vK~~~G~~V~~G~IivRQRgt 42 (81)
T PF01016_consen 22 VKKFGGQFVKAGNIIVRQRGT 42 (81)
T ss_dssp ESSSTTCEESSTSEEEEBSSS
T ss_pred EEEeCCEEEcCCCEEEEeCCC
Confidence 467899999999999986663
No 178
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=23.72 E-value=98 Score=25.19 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=19.6
Q ss_pred EEEecCCCCeeecCCEEEEEEech
Q 033026 52 VEWSLKDGDHVHKGLQFGKVSGRA 75 (129)
Q Consensus 52 v~~~~~dG~~v~~g~~i~~i~G~a 75 (129)
+...++-|+.|++||+|.++.-+.
T Consensus 255 ~~~~~~~G~~V~~G~~lg~i~d~~ 278 (316)
T cd06252 255 FEPLVDLGDEVSAGQVAGRIHFPE 278 (316)
T ss_pred EEEecCCCCEEcCCCEEEEEECCC
Confidence 455678899999999999987553
No 179
>PF11607 DUF3247: Protein of unknown function (DUF3247); InterPro: IPR021649 This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions []. ; PDB: 2E12_B.
Probab=23.71 E-value=1.5e+02 Score=20.74 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcCCCcEEEEecCCCCeee
Q 033026 36 IALAEMIFHEVDPSLKVEWSLKDGDHVH 63 (129)
Q Consensus 36 ~~~~~~~~~~~~~~~~v~~~~~dG~~v~ 63 (129)
+...+.+...++.+.+|+..++||+.+.
T Consensus 15 Ia~LE~lv~~L~ge~~V~l~L~DGs~l~ 42 (101)
T PF11607_consen 15 IARLEHLVSELDGEERVELELDDGSMLR 42 (101)
T ss_dssp HHHHHHHHHCTTTT-EEEEEETTS-EEE
T ss_pred HHHHHHHHhhcCCcceEEEEEcCCCeee
Confidence 4556677778888899999999999864
No 180
>PRK05435 rpmA 50S ribosomal protein L27; Validated
Probab=23.10 E-value=72 Score=21.59 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=17.7
Q ss_pred EecCCCCeeecCCEEEEEEec
Q 033026 54 WSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+..-+|+.|.||++|.+=+|.
T Consensus 23 vK~~~g~~V~~G~IivRQRGt 43 (82)
T PRK05435 23 VKRFGGQFVKAGNIIVRQRGT 43 (82)
T ss_pred eEecCCEEEcCCcEEEEeCCC
Confidence 356799999999999998874
No 181
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=22.92 E-value=61 Score=27.05 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=15.9
Q ss_pred ecCCCCeeecCCEEEEEE
Q 033026 55 SLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 55 ~~~dG~~v~~g~~i~~i~ 72 (129)
.+++||.|++||.|.++-
T Consensus 273 ~Vk~Gq~V~~Gq~Ig~~G 290 (319)
T PRK10871 273 LVREQQEVKAGQKIATMG 290 (319)
T ss_pred ccCCcCEECCCCeEEeEc
Confidence 588999999999999763
No 182
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=22.80 E-value=1e+02 Score=23.03 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.2
Q ss_pred CcEEEEecCCCCeeecCCEEEEEE
Q 033026 49 SLKVEWSLKDGDHVHKGLQFGKVS 72 (129)
Q Consensus 49 ~~~v~~~~~dG~~v~~g~~i~~i~ 72 (129)
+.++...+..|++|.+|+.++.+.
T Consensus 89 G~~v~~i~~~G~rV~~gd~lA~v~ 112 (150)
T PF09891_consen 89 GYQVYPIVDEGDRVRKGDRLAYVT 112 (150)
T ss_dssp SSEEEESS-TSEEE-TT-EEEEEE
T ss_pred ceEEEEEcccCcEeccCcEEEEEE
Confidence 378888999999999999998875
No 183
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=22.58 E-value=1.2e+02 Score=24.06 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=18.6
Q ss_pred EEecCCCCeeecCCEEEEEEe
Q 033026 53 EWSLKDGDHVHKGLQFGKVSG 73 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G 73 (129)
+..+++|+.|..|++|+.++-
T Consensus 58 ~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 58 RQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred EEEcCCCCEeCCCCEEEEEec
Confidence 467899999999999999973
No 184
>COG0211 RpmA Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]
Probab=22.11 E-value=74 Score=21.71 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=17.7
Q ss_pred ecCCCCeeecCCEEEEEEec
Q 033026 55 SLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 55 ~~~dG~~v~~g~~i~~i~G~ 74 (129)
..-|||.|.+|++|.+=+|.
T Consensus 24 K~~~Gq~v~aG~IivRQRGT 43 (87)
T COG0211 24 KKFGGQFVKAGSIIVRQRGT 43 (87)
T ss_pred eeeCCeEEecccEEEEeccc
Confidence 46699999999999998886
No 185
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=22.07 E-value=1.9e+02 Score=17.16 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHH
Q 033026 37 ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84 (129)
Q Consensus 37 ~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~ 84 (129)
....++-+..+ +++. +++.. ..+-.+++.|+.+++..+...
T Consensus 20 ~~i~~i~~~~g--~~I~--i~~~~---~~~~~v~I~G~~~~v~~A~~~ 60 (62)
T cd02394 20 SNIRKIMEETG--VKIR--FPDPG---SKSDTITITGPKENVEKAKEE 60 (62)
T ss_pred CcHHHHHHHhC--CEEE--cCCCC---CCCCEEEEEcCHHHHHHHHHH
Confidence 34566666665 5554 44433 456778999999888877543
No 186
>PF00936 BMC: BMC domain; InterPro: IPR000249 This domain is found in a variety of polyhedral organelle shell proteins, including CsoS1A, CsoS1B and CsoS1C of Thiobacillus neapolitanus (Halothiobacillus neapolitanus) and their orthologs from other bacteria. Some autotrophic and non-autotrophic organisms form polyhedral organelles, carboxysomes/enterosomes []. The best studied is the carboxysome of Halothiobacillus neapolitanus, which is composed of at least 9 proteins: six shell proteins, CsoS1A, CsoS1B, CsoS1C, Cso2A, Cso2B and CsoS3 (carbonic anhydrase) [], one protein of unknown function and the large and small subunits of RuBisCo (CbbL and Cbbs). Carboxysomes appear to be approximately 120 nm in diameter, most often observed as regular hexagons, with a solid interior bounded by a unilamellar protein shell. The interior is filled with type I RuBisCo, which is composed of 8 large subunits and 8 small subunits; it accounts for 60% of the carboxysomal protein, which amounts to approximately 300 molecules of enzyme per carboxysome. Carboxysomes are required for autotrophic growth at low CO2 concentrations and are thought to function as part of a CO2-concentrating mechanism [, ]. Polyhedral organelles, enterosomes, from non-autotrophic organisms are involved in coenzyme B12-dependent 1,2-propanediol utilisation (e.g., in Salmonella enterica []) and ethanolamine utilisation (e.g., in Salmonella typhimurium []). Genes needed for enterosome formation are located in the 1,2-propanediol utilisation pdu [, ] or ethanolamine utilisation eut [, ] operons, respectively. Although enterosomes of non-autotrophic organisms are apparently related to carboxysomes structurally, a functional relationship is uncertain. A role in CO2 concentration, similar to that of the carboxysome, is unlikely since there is no known association between CO2 and coenzyme B12-dependent 1,2-propanediol or ethanolamine utilisation []. It seems probable that entrosomes help protect the cells from reactive aldehyde species in the degradation pathways of 1,2-propanediol and ethanolamine [].; PDB: 3F56_C 3FCH_A 3I87_A 3GFH_B 3I82_A 3MPV_A 3IO0_A 4AXJ_B 3N79_A 2G13_A ....
Probab=21.25 E-value=2.4e+02 Score=18.05 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=40.0
Q ss_pred eEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEEEechhhHHHHHHHHHHHHHH
Q 033026 31 GIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQR 91 (129)
Q Consensus 31 gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~a~~ll~~ER~~LN~L~~ 91 (129)
++..|+.-+...++..+ +++.....-+ +|-..+.+.|+..++-.+-+.+.+.++.
T Consensus 10 ~~~~~i~aaD~alKaa~--V~l~~~~~~~----~g~~~~~i~G~vs~V~~Av~a~~~~~~~ 64 (75)
T PF00936_consen 10 GIAAAIVAADAALKAAN--VELVEIELIC----GGKVTVIITGDVSAVKAAVDAAEEAAGK 64 (75)
T ss_dssp SHHHHHHHHHHHHHHSS--EEEEEEEEES----TTEEEEEEEESHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCC--EEEEEEEecC----CCeEEEEEEECHHHHHHHHHHHHHHHhh
Confidence 34567778888888876 6654333222 6889999999999998887777776654
No 187
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=21.16 E-value=1.1e+02 Score=23.37 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=14.7
Q ss_pred eeecCCEEEEEEechhhH
Q 033026 61 HVHKGLQFGKVSGRAHSI 78 (129)
Q Consensus 61 ~v~~g~~i~~i~G~a~~l 78 (129)
.|++|++|+++.|..++.
T Consensus 125 rVk~Gqiifei~~~~~~~ 142 (172)
T TIGR00279 125 RVKIGQKIFSVWTKPSNF 142 (172)
T ss_pred EECcCCEEEEEEeecCCH
Confidence 469999999999986543
No 188
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=21.10 E-value=81 Score=26.55 Aligned_cols=40 Identities=30% Similarity=0.337 Sum_probs=29.0
Q ss_pred EEEEEEeeCCeEEEcHHHHHHHHhhcCCCcEEEEecCCCCeeecCCEEEEE
Q 033026 21 VEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 71 (129)
Q Consensus 21 ~~a~i~are~gvvaG~~~~~~~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i 71 (129)
.-..++|+.+|++-= ++-..| +..++.||.|++||+|.+-
T Consensus 188 ~p~~lVA~kdGvI~~------i~v~~G-----~p~Vk~Gd~VkkGdvLISG 227 (385)
T PF06898_consen 188 EPCNLVAKKDGVITS------IIVRSG-----TPLVKVGDTVKKGDVLISG 227 (385)
T ss_pred CCcceEECCCCEEEE------EEecCC-----eEEecCCCEECCCCEEEee
Confidence 346789999988753 233334 3578999999999998764
No 189
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=20.72 E-value=22 Score=30.54 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEecCCCCeeecCCEEEEEEechhh
Q 033026 53 EWSLKDGDHVHKGLQFGKVSGRAHS 77 (129)
Q Consensus 53 ~~~~~dG~~v~~g~~i~~i~G~a~~ 77 (129)
+|++++||.|..=|.+++++-+-.+
T Consensus 83 eWfVKEGDtVeqFd~lCEVQSDKAs 107 (474)
T KOG0558|consen 83 EWFVKEGDTVEQFDPLCEVQSDKAS 107 (474)
T ss_pred eehhhcCCcHHHhcchhhcccccce
Confidence 6899999999888888887765443
No 190
>TIGR00062 L27 ribosomal protein L27. Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.
Probab=20.51 E-value=78 Score=21.46 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.8
Q ss_pred EecCCCCeeecCCEEEEEEec
Q 033026 54 WSLKDGDHVHKGLQFGKVSGR 74 (129)
Q Consensus 54 ~~~~dG~~v~~g~~i~~i~G~ 74 (129)
+..-+|+.|.||++|.+=+|.
T Consensus 23 vK~~~gq~V~~G~IivRQRGt 43 (83)
T TIGR00062 23 VKRAGGQFVRAGSIIVRQRGT 43 (83)
T ss_pred eEecCCEEEcCCcEEEEcCCc
Confidence 356799999999999998875
No 191
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=20.40 E-value=1.1e+02 Score=21.83 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 033026 79 VIAERVVLNFMQRMSGIATL 98 (129)
Q Consensus 79 l~~ER~~LN~L~~~SGIAT~ 98 (129)
-..|.++.-+|.|+|+||..
T Consensus 81 ~~~~~~l~~YL~RlS~Ia~~ 100 (113)
T cd07299 81 QILTPLLSEYLNRLTGIVDS 100 (113)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 34688899999999999864
No 192
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=20.11 E-value=1.1e+02 Score=21.83 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHHH
Q 033026 77 SIVIAERVVLNFMQRMSGIATL 98 (129)
Q Consensus 77 ~ll~~ER~~LN~L~~~SGIAT~ 98 (129)
+--..|.++.-+|+|+|+||..
T Consensus 80 ~~~~~~~~l~~YL~RlS~Ia~~ 101 (114)
T cd07278 80 EQQNLHQVLSDYLKRLSSIAGN 101 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHhcC
Confidence 4456788899999999999964
Done!