RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033026
(129 letters)
>gnl|CDD|178318 PLN02716, PLN02716, nicotinate-nucleotide diphosphorylase
(carboxylating).
Length = 308
Score = 223 bits (570), Expect = 1e-74
Identities = 98/123 (79%), Positives = 110/123 (89%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GDVTC+ATIP DME EA FLAK DG++AGIALA+M+F EVDPSLKVEW+ DGD VHKGL
Sbjct: 35 GDVTCLATIPGDMEAEATFLAKADGVLAGIALADMVFEEVDPSLKVEWAAIDGDFVHKGL 94
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLDK 126
+FGKV+G AHSI++AERVVLNFMQRMSGIATLT+AMAD A PA ILETRKTAP LRL+DK
Sbjct: 95 KFGKVTGPAHSILVAERVVLNFMQRMSGIATLTKAMADAAKPACILETRKTAPGLRLVDK 154
Query: 127 WAV 129
WAV
Sbjct: 155 WAV 157
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase
or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 268
Score = 171 bits (435), Expect = 2e-54
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 2/125 (1%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GD+T A IP D EA +AKE+G++AG+ +AE +F +DP ++VEW +KDGD V G
Sbjct: 15 GDITSEAIIPPDARAEARLIAKEEGVLAGLPVAEEVFELLDPGIEVEWLVKDGDRVEPGQ 74
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLL 124
V G A S++ AER LNF+QR+SGIATLTR + A IL+TRKT P LRLL
Sbjct: 75 VLATVEGPARSLLTAERTALNFLQRLSGIATLTRRYVEALAGTKARILDTRKTTPGLRLL 134
Query: 125 DKWAV 129
+K+AV
Sbjct: 135 EKYAV 139
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase), also called nicotinate-nucleotide
pyrophosphorylase, is involved in the de novo synthesis
of NAD in both prokaryotes and eukaryotes. It catalyses
the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide. QPRTase functions as a
homodimer with two active sites, each formed by the
C-terminal region of one subunit and the N-terminal
region of the other.
Length = 269
Score = 152 bits (386), Expect = 4e-47
Identities = 61/125 (48%), Positives = 82/125 (65%), Gaps = 3/125 (2%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GD+T A IP D A +AKE+G++AG+ +AE +F +D ++VEW +KDGD V G
Sbjct: 15 GDLTTEALIPGDAPATATLIAKEEGVLAGLEVAEEVFELLD-GIEVEWLVKDGDRVEAGQ 73
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLL 124
+V G A S++ AERV LN +QR+SGIAT TR + A A I +TRKT P LRLL
Sbjct: 74 VLLEVEGPARSLLTAERVALNLLQRLSGIATATRRYVEAARGTKARIADTRKTTPGLRLL 133
Query: 125 DKWAV 129
+K+AV
Sbjct: 134 EKYAV 138
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 143 bits (362), Expect = 2e-43
Identities = 56/125 (44%), Positives = 81/125 (64%), Gaps = 2/125 (1%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GD+T A IP D + EA +AKE G++AG+ +AE +F + PS++++W +KDGD V G
Sbjct: 21 GDITTEALIPEDRKAEAVIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGD 80
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLL 124
++ G A +++ AER LNF+Q +SGIAT T M + I +TRKT P LRLL
Sbjct: 81 VLAEIEGPARALLTAERTALNFLQHLSGIATATARMVEALRGTNVRIADTRKTTPGLRLL 140
Query: 125 DKWAV 129
+K+AV
Sbjct: 141 EKYAV 145
>gnl|CDD|181221 PRK08072, PRK08072, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 129 bits (327), Expect = 3e-38
Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GDVT P ++ E FLAK+ G+ AG + E + +D ++VE KDGD V KG
Sbjct: 21 GDVTSQLIFPDNLLGEGVFLAKDTGVFAGRLVIEEGYKLLDERIEVELHKKDGDLVKKGE 80
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTR-AMADLAHPAT-ILETRKTAPTLRLL 124
V G S++ ERV+LN +QRMSGIAT+TR A+ L I +TRKT P LR+
Sbjct: 81 IIATVQGPVASLLTGERVILNLIQRMSGIATMTRKAVLALDDSHIRICDTRKTTPGLRMF 140
Query: 125 DKWAV 129
DK+AV
Sbjct: 141 DKYAV 145
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase. Synonym:
quinolinate phosphoribosyltransferase (decarboxylating)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pyridine nucleotides].
Length = 265
Score = 128 bits (323), Expect = 1e-37
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 4/125 (3%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GD+T A +P A +AKEDG++AG+ +A +F ++ ++VEW +KDGD V G
Sbjct: 13 GDITTEALVPGSTRATASLVAKEDGVLAGLPVARRVFEQLG--VQVEWLVKDGDRVEPGE 70
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRLL 124
+V G A S++ AER LNF+ R+SGIAT TR + A I +TRKT P LRLL
Sbjct: 71 VVAEVEGPARSLLTAERTALNFLGRLSGIATATRKYVEAARGTNVRIADTRKTTPGLRLL 130
Query: 125 DKWAV 129
+K+AV
Sbjct: 131 EKYAV 135
>gnl|CDD|236255 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 278
Score = 114 bits (286), Expect = 4e-32
Identities = 54/130 (41%), Positives = 74/130 (56%), Gaps = 6/130 (4%)
Query: 4 TSAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVH 63
GDVT A IP D+ A +AK+DG+IAG+ A+ +F +KVE +DG+ V
Sbjct: 14 APFGDVTSEAVIPPDVTARAVIIAKQDGVIAGLEEAKALFEHF--GVKVEVRKRDGEEVK 71
Query: 64 KGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHP----ATILETRKTAP 119
G ++ G A +I++ ER LN + RMSGIAT TR + +L + TRKT P
Sbjct: 72 AGEVILELKGNARAILLVERTALNIIGRMSGIATETRKLVELVKAVNPKVRVAGTRKTLP 131
Query: 120 TLRLLDKWAV 129
LRLLDK A+
Sbjct: 132 GLRLLDKKAI 141
>gnl|CDD|180612 PRK06543, PRK06543, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 112 bits (281), Expect = 2e-31
Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 2/126 (1%)
Query: 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 65
GD+T IP AH A+E G+ +GI + F VDP++ V ++ DG+ G
Sbjct: 21 WGDITSETLIPASATASAHLTAREPGVFSGIDVFAAAFRLVDPAITVTLAVADGERFEAG 80
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRL 123
V+G A S++ AER+ LNF QRMSGIATLT A D + A I++TRKT P LR+
Sbjct: 81 DILATVTGPARSVLTAERIALNFTQRMSGIATLTAAFVDAVNGTRARIVDTRKTTPGLRI 140
Query: 124 LDKWAV 129
+++AV
Sbjct: 141 FERYAV 146
>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase,
N-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de
novo synthesis of NAD in both prokaryotes and
eukaryotes. It catalyzes the reaction of quinolinic
acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in
the presence of Mg2+ to give rise to nicotinic acid
mononucleotide (NaMN), pyrophosphate and carbon
dioxide. The QA substrate is bound between the
C-terminal domain of one subunit, and the N-terminal
domain of the other. The N-terminal domain has an
alpha/beta hammerhead fold.
Length = 88
Score = 103 bits (260), Expect = 2e-30
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 65
GD+T A IP D +A +AKE+G++AG+ A +F + L+VEW +KDG+ V G
Sbjct: 3 RGDLTTEALIPPDKRAKAVIIAKEEGVVAGLEEAAEVFELLG--LEVEWLVKDGERVEAG 60
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMS 93
++ G A +++ AERV LNF+QR+S
Sbjct: 61 DVILEIEGPARALLTAERVALNFLQRLS 88
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 281
Score = 103 bits (259), Expect = 4e-28
Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 65
AGD+T A +P D +A++ G+IAG+ LA + F VDP +++ L DG V G
Sbjct: 26 AGDITSDAIVPADHRATVVLVARQPGVIAGLDLARLAFRLVDPEIEMRRHLPDGAAVAPG 85
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL--AHPATILETRKTAPTLRL 123
+SG A ++ AER LNF+ +SGIAT T ++ A ++ TRKT P LR
Sbjct: 86 DVIATISGPARGLLTAERTALNFLCHLSGIATATASIVAAIAGTKAKVVCTRKTTPGLRA 145
Query: 124 LDKWAV 129
L+K+AV
Sbjct: 146 LEKYAV 151
>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 101 bits (254), Expect = 2e-27
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 65
+GD+T IP + +A + +E +IAG A + +F ++DP + V W + DG+ V
Sbjct: 23 SGDITAQ-LIPAERLAKATVITREAAVIAGTAWVDAVFRQLDPRVAVHWQVADGERVSAN 81
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRL 123
+ G A S++ ER LNF+Q +SG+AT R ADL +L+TRKT P LRL
Sbjct: 82 QVLFHLEGPARSLLTGERSALNFLQLLSGVATRARHYADLVAGTQVKLLDTRKTLPGLRL 141
Query: 124 LDKWAV 129
K+AV
Sbjct: 142 AQKYAV 147
>gnl|CDD|236125 PRK07896, PRK07896, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 289
Score = 98.6 bits (246), Expect = 4e-26
Identities = 47/126 (37%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 8 DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPSLKVEWSLKDGDHVHKG 65
DVT +AT+P D A +++E G++AG+ +A ++ EV +V ++DG V G
Sbjct: 32 DVTTVATVPADAVATASVVSREAGVVAGLDVALLVLDEVLGTDGYEVLDRVEDGARVPPG 91
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH--PATILETRKTAPTLRL 123
V+ ++ AER +LN + +SGIAT T A D A I +TRKT P LR
Sbjct: 92 QALLTVTAPTRGLLTAERTMLNLLCHLSGIATATAAWVDAVAGTKAKIRDTRKTLPGLRA 151
Query: 124 LDKWAV 129
L K+AV
Sbjct: 152 LQKYAV 157
>gnl|CDD|236017 PRK07428, PRK07428, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 288
Score = 96.3 bits (240), Expect = 2e-25
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 6/112 (5%)
Query: 22 EAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIA 81
+A ++AKE G+IAG+ +A +F +DP + + +G G ++ G ++++
Sbjct: 44 QAKWIAKESGVIAGLPIAARVFQLLDPQVSFTPLVAEGAACESGQVVAEIEGPLDALLMG 103
Query: 82 ERVVLNFMQRMSGIATLTR----AMADLAHPATILETRKTAPTLRLLDKWAV 129
ERV LN R+SGIATLTR +ADL P +++TRKT P LRLL+K+A
Sbjct: 104 ERVALNLAMRLSGIATLTRQYVEKIADL--PTQLVDTRKTTPGLRLLEKYAT 153
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II;
This family contains two enzymes that play an important
role in NAD production by either allowing quinolinic
acid (QA) , quinolinate phosphoribosyl transferase
(QAPRTase), or nicotinic acid (NA), nicotinate
phosphoribosyltransferase (NAPRTase), to be used in the
synthesis of NAD. QAPRTase catalyses the reaction of
quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide, an important step in
the de novo synthesis of NAD. NAPRTase catalyses a
similar reaction leading to NAMN and pyrophosphate,
using nicotinic acid an PPRP as substrates, used in the
NAD salvage pathway.
Length = 281
Score = 93.5 bits (233), Expect = 3e-24
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 8 DVTCMATI----PLDMEVEAHFLAKED--GIIAGIALAEMIFHEVD-PSLKVEWSLKDGD 60
D+ + I P D A F A+ED G++AG+ A + + P V ++ +G
Sbjct: 1 DLYKLTMIQAYPPPDTRATAEFTAREDPYGVLAGLEEALELLELLRFPGPLVILAVPEGT 60
Query: 61 HVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA----HPATILETRK 116
V G + G A +++ ERV+LN +QR+SGIAT T + A TRK
Sbjct: 61 VVEPGEPLLTIEGPARELLLLERVLLNLLQRLSGIATATARYVEAAKGANTKVHDFGTRK 120
Query: 117 TAPTLRLLDKWAV 129
T P LRLL+K+AV
Sbjct: 121 TTPGLRLLEKYAV 133
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 273
Score = 88.6 bits (220), Expect = 2e-22
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 12/118 (10%)
Query: 18 DMEVEAHFLAKEDGIIAGI----ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSG 73
D + A +AK +G+ +G L EM ++ +++KDG+ KG ++ G
Sbjct: 28 DFKATAKIIAKSEGVFSGEKYALELLEMT------GIECVFTIKDGERFKKGDILMEIEG 81
Query: 74 RAHSIVIAERVVLNFMQRMSGIATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 129
++ ER +LN +Q SGIATLT + H +L+TRKT P LR+ +K++V
Sbjct: 82 DFSMLLKVERTLLNLLQHSSGIATLTSRYVEALESHKVKLLDTRKTRPLLRIFEKYSV 139
>gnl|CDD|235900 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 294
Score = 83.6 bits (207), Expect = 2e-20
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 65
+GD T +P A + +E+ ++ G+ + + VDPS++V W ++GD +
Sbjct: 39 SGDQTGR-LVPAGEPRRARVIVREEAVLCGVPWFDAVMRAVDPSIEVTWRYREGDRMTAD 97
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADL--AHPATILETRKTAPTLRL 123
++ G A +++ AER LNF+Q +SG+A+ TR D A IL+TRKT P LRL
Sbjct: 98 STVCELEGPARALLTAERNALNFLQLLSGVASATRRYVDRIAGTRARILDTRKTLPGLRL 157
Query: 124 LDKWAV 129
K+AV
Sbjct: 158 AQKYAV 163
>gnl|CDD|235831 PRK06559, PRK06559, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 290
Score = 82.0 bits (202), Expect = 8e-20
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 8 DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVE--WSLKDGDHVHKG 65
D + A + + AKE G++AG+ + + +F D + + KDGD + G
Sbjct: 29 DYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSG 88
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATI--LETRKTAPTLRL 123
++ G S++ ERV LNF+Q +SGIA++T A + I +TRKT P LRL
Sbjct: 89 DLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRL 148
Query: 124 LDKWAV 129
+K+AV
Sbjct: 149 FEKYAV 154
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase;
Validated.
Length = 296
Score = 77.4 bits (191), Expect = 4e-18
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 15 IPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGR 74
+P D A + +EDG+ G E +F ++ + +EW + DGD + +++G
Sbjct: 50 LPADSRSHATIITREDGVFCGKRWVEEVFIQLGDDVTIEWHVDDGDVITANQTLFELTGP 109
Query: 75 AHSIVIAERVVLNFMQRMSGIATLTRAMAD-LAHPAT-ILETRKTAPTLRLLDKWAV 129
A ++ ER LNF+Q +SG+AT R + LA T +L+TRKT P LR K+AV
Sbjct: 110 ARVLLTGERTALNFVQTLSGVATEVRRYVELLAGTNTQLLDTRKTLPGLRSALKYAV 166
>gnl|CDD|180397 PRK06096, PRK06096, molybdenum transport protein ModD; Provisional.
Length = 284
Score = 53.6 bits (129), Expect = 2e-09
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 6/127 (4%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GD+T A F ++ G ++GI++A + + L ++ ++ DG + G
Sbjct: 20 GDLTTRALGIGHQPGYIEFFHRQGGCVSGISVACKMLTTLG--LTIDDAVSDGSQANAGQ 77
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLR 122
+ G A ++ + V N ++ G++ M L I TRK P R
Sbjct: 78 RLISAQGNAAALHQGWKAVQNVLEWSCGVSDYLAQMLALLRERYPDGNIACTRKAIPGTR 137
Query: 123 LLDKWAV 129
LL AV
Sbjct: 138 LLATQAV 144
>gnl|CDD|238807 cd01573, modD_like, ModD; Quinolinate phosphoribosyl transferase
(QAPRTase or QPRTase) present in some modABC operons in
bacteria, which are involved in molybdate transport. In
general, QPRTases are part of the de novo synthesis
pathway of NAD in both prokaryotes and eukaryotes. They
catalyse the reaction of quinolinic acid (QA) with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to produce nicotinic acid mononucleotide (NAMN),
pyrophosphate and carbon dioxide.
Length = 272
Score = 50.0 bits (120), Expect = 3e-08
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Query: 25 FLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84
F A++ G++ G A I + L+V+ + G V G + G A ++ + +V
Sbjct: 33 FRARDPGVLCGTEEAARILELLG--LEVDLAAASGSRVAAGAVLLEAEGPAAALHLGWKV 90
Query: 85 VLNFMQRMSGIATLTRAMADLA---HPAT-ILETRKTAPTLRLL 124
++ SGIAT T M A +P + TRK P R L
Sbjct: 91 AQTLLEWASGIATATAEMVAAARAVNPDIVVATTRKAFPGTRKL 134
>gnl|CDD|216667 pfam01729, QRPTase_C, Quinolinate phosphoribosyl transferase,
C-terminal domain. Quinolinate phosphoribosyl
transferase (QPRTase) or nicotinate-nucleotide
pyrophosphorylase EC:2.4.2.19 is involved in the de novo
synthesis of NAD in both prokaryotes and eukaryotes. It
catalyzes the reaction of quinolinic acid with
5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence
of Mg2+ to give rise to nicotinic acid mononucleotide
(NaMN), pyrophosphate and carbon dioxide. The QA
substrate is bound between the C-terminal domain of one
subunit, and the N-terminal domain of the other. The
C-terminal domain has a 7 beta-stranded TIM barrel-like
fold.
Length = 169
Score = 46.9 bits (112), Expect = 2e-07
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 95 IATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 129
IAT TR M + A I +TRKT P LRLL+K+AV
Sbjct: 1 IATATRRMVEAARGTKVRIADTRKTTPGLRLLEKYAV 37
>gnl|CDD|130401 TIGR01334, modD, putative molybdenum utilization protein ModD. The
gene modD for a member of this family is found with
molybdenum transport genes modABC in Rhodobacter
capsulatus. However, disruption of modD causes only a
4-fold (rather than 500-fold for modA, modB, modC)
change in the external molybdenum concentration required
to suppress an alternative nitrogenase. ModD proteins
are highly similar to nicotinate-nucleotide
pyrophosphorylase (also called quinolinate
phosphoribosyltransferase). The function unknown
[Unknown function, General].
Length = 277
Score = 47.2 bits (112), Expect = 3e-07
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GD+T A D F A+++GI++G++ A + ++ +++++ G G
Sbjct: 19 GDLTTRALGIQDHPAHITFTARDEGIVSGVSEAAKLLKQLG--ASIDYAVPSGSRALAGT 76
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLA---HPATILE-TRKTAPTLR 122
+ G A + + + ++ G+AT T M LA P ++ TRK P R
Sbjct: 77 LLLEAKGSAGQLHQGWKSAQSVLEWSCGVATYTHKMVTLAKKISPMAVVACTRKAIPLTR 136
Query: 123 LLDKWAV 129
L AV
Sbjct: 137 PLAVKAV 143
>gnl|CDD|151471 pfam11024, DGF-1_4, Dispersed gene family protein 1 of Trypanosoma
cruzi region 4. This protein is likely to be highly
expressed, and is expressed from the sub-telomeric
region. However, the function is not known. Other
domains on this protein include DGF-1_N, DGF-1_2, and
DGF-1_5. This domain is just downstream from the
C-terminus, but not the C-terminus of proteins, also
annotated as being DGF-1, that constitute family
DGF-1_C.
Length = 75
Score = 26.8 bits (59), Expect = 1.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 99 TRAMADLAHPATILETRKTAPT 120
T M L+H AT+ ETR PT
Sbjct: 7 TPGMPLLSHTATLTETRSLTPT 28
>gnl|CDD|214497 smart00062, PBPb, Bacterial periplasmic substrate-binding
proteins. bacterial proteins, eukaryotic ones are in
PBPe.
Length = 219
Score = 27.3 bits (61), Expect = 2.0
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 26 LAKEDGIIAG--IALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKV 71
A EDG + G + LA+ I E+ LKVE+ D + L+ GK+
Sbjct: 15 FADEDGELTGFDVDLAKAIAKELG--LKVEFVEVSFDSLLTALKSGKI 60
>gnl|CDD|232861 TIGR00181, pepF, oligoendopeptidase F. This family represents the
oligoendopeptidase F clade of the family of larger M3 or
thimet (for thiol-dependent metallopeptidase)
oligopeptidase family. Lactococcus lactis PepF
hydrolyzed peptides of 7 and 17 amino acids with fairly
broad specificity. The homolog of lactococcal PepF in
group B Streptococcus was named PepB (PMID:8757883),
with the name difference reflecting a difference in
species of origin rather activity; substrate profiles
were quite similar. Differences in substrate specificity
should be expected in other species. The gene is
duplicated in Lactococcus lactis on the plasmid that
bears it. A shortened second copy is found in Bacillus
subtilis [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 591
Score = 27.3 bits (61), Expect = 2.6
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 31 GIIAGIALAEMIFHEVDP 48
G +A AL E I E
Sbjct: 523 GQVAATALYEKIKEEGKG 540
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 27.1 bits (60), Expect = 3.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 52 VEWSLKDGDHVHKGLQFGKVS 72
+ + K+GDHV KG + G S
Sbjct: 565 ITFVKKEGDHVKKGDELGYFS 585
>gnl|CDD|218197 pfam04661, Pox_I3, Poxvirus I3 ssDNA-binding protein.
Length = 263
Score = 27.0 bits (60), Expect = 3.1
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 16 PLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 57
+ E+E LAK D +A L ++F+ KV ++LK
Sbjct: 164 SISRELEN--LAKRDPQMAKAILVPIVFYRNGNECKVTFALK 203
>gnl|CDD|226154 COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism
[Inorganic ion transport and metabolism].
Length = 291
Score = 26.7 bits (59), Expect = 4.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 87 NFMQRMSGIATLTRAMADLAHPATILETRKTAP 119
F QR++G+AT R ATI++TR P
Sbjct: 89 RFFQRVAGVATTERTDD-----ATIIQTRHRIP 116
>gnl|CDD|235365 PRK05205, PRK05205, bifunctional pyrimidine regulatory protein PyrR
uracil phosphoribosyltransferase; Provisional.
Length = 176
Score = 26.2 bits (59), Expect = 4.3
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 89 MQRMSGI--ATLTRAMADLAHPATILETRKTAPTLRLL 124
M + + L RA+ +AH I+E K L L+
Sbjct: 1 MMKKEILDAEALRRALTRIAHE--IIERNKGLDNLVLV 36
>gnl|CDD|225918 COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General
function prediction only].
Length = 978
Score = 26.6 bits (59), Expect = 5.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 43 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERV 84
F E+ P L E ++DGD V +FG++ RA + +RV
Sbjct: 856 FVEISPELAAERGIEDGDLVRLTSEFGEIKLRAL---VTDRV 894
>gnl|CDD|177515 PHA03068, PHA03068, DNA-binding phosphoprotein; Provisional.
Length = 270
Score = 26.2 bits (58), Expect = 6.1
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 16 PLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLK 57
+ E+E+ L+K D +A L ++F+ KV ++LK
Sbjct: 173 SISEELES--LSKRDPQMAKAILVPIVFYRNGNETKVTFALK 212
>gnl|CDD|241167 cd12723, RRM1_CPEB1, RNA recognition motif 1 in cytoplasmic
polyadenylation element-binding protein 1 (CPEB-1) and
similar proteins. This subgroup corresponds to the
RRM2 of CPEB-1 (also termed CPE-BP1 or CEBP), an
RNA-binding protein that interacts with the cytoplasmic
polyadenylation element (CPE), a short U-rich motif in
the 3' untranslated regions (UTRs) of certain mRNAs. It
functions as a translational regulator that plays a
major role in the control of maternal CPE-containing
mRNA in oocytes, as well as of subsynaptic
CPE-containing mRNA in neurons. Once phosphorylated and
recruiting the polyadenylation complex, CPEB-1 may
function as a translational activator stimulating
polyadenylation and translation. Otherwise, it may
function as a translational inhibitor when
dephosphorylated and bound to a protein such as maskin
or neuroguidin, which blocks translation initiation
through interfering with the assembly of eIF-4E and
eIF-4G. Although CPEB-1 is mainly located in cytoplasm,
it can shuttle between nucleus and cytoplasm. CPEB-1
contains an N-terminal unstructured region, two RNA
recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains),
and a Zn-finger motif. Both of the RRMs and the Zn
finger are required for CPEB-1 to bind CPE. The
N-terminal regulatory region may be responsible for
CPEB-1 interacting with other proteins. .
Length = 100
Score = 25.4 bits (56), Expect = 6.3
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 49 SLKVEWSLKDGDH 61
S+ VEW KDG H
Sbjct: 28 SVSVEWPGKDGKH 40
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 26.3 bits (58), Expect = 6.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 73 GRAHSIVIAERVVLNFMQRMSGIATLTRAMAD 104
GRA S+VIA ++ + RM G A TR D
Sbjct: 228 GRARSVVIAAPADVSPLLRMQGAAYATRIAED 259
>gnl|CDD|236328 PRK08662, PRK08662, nicotinate phosphoribosyltransferase; Reviewed.
Length = 343
Score = 25.6 bits (57), Expect = 8.2
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 19 MEVEA-HFLAKEDGIIAGI--ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRA 75
EV A E G+ AG+ L + VD ++L +G ++ G
Sbjct: 40 AEVTASSLPKGEWGVFAGLEEVLELLEGKPVDV-----YALPEGTLFDPKEPVMRIEGPY 94
Query: 76 HSIVIAERVVLNFMQRMSGIAT 97
I E +L + SGIAT
Sbjct: 95 LEFGIYETALLGILAHASGIAT 116
>gnl|CDD|213069 cd11753, GH94N_ChvB_NdvB_2_like, Second GH94N domain of cyclic beta
1-2 glucan synthetase and similar domains. The
glycoside hydrolase family 94 (previously known as
glycosyltransferase family 36) includes cyclic beta 1-2
glucan synthetase (EC:2.4.1.20) or ChvB (encoded by the
chromosomal chvB virulence gene). This second of two
tandemly repeated GH94-N-terminal-like domains has not
been characterized functionally. Some beta 1-2 glucan
synthetases are annotated as NdvB (nodule development B)
gene products, glycosyltransferases required for the
synthesis of cyclic beta-(1,2)-glucans, which play a
role in interactions between bacteria and plants.
Length = 336
Score = 25.6 bits (57), Expect = 8.3
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 97 TLTRAMADLAHPA 109
L AD AHPA
Sbjct: 189 VLAPPAADEAHPA 201
>gnl|CDD|223925 COG0856, COG0856, Orotate phosphoribosyltransferase homologs
[Nucleotide transport and metabolism].
Length = 203
Score = 25.5 bits (56), Expect = 8.7
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 3 GTSAGDVTCMATIPLDMEVEAHFLAKED--GI-IAGIALAEMIFHEVDPSLKVEWSLKDG 59
G S + ++ DM +E + GI I+G+ LA M+ +E+ L + K
Sbjct: 62 GKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHR 121
Query: 60 DHVHKGLQ------FGKVSGRAHSIV 79
G F V G+ IV
Sbjct: 122 KDEGAGKGGSISSNFASVEGKRCVIV 147
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.134 0.398
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,698,059
Number of extensions: 600702
Number of successful extensions: 579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 44
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)