RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 033026
(129 letters)
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 169 bits (432), Expect = 4e-54
Identities = 57/125 (45%), Positives = 79/125 (63%), Gaps = 2/125 (1%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GD+T + +P D+E EA LAKE G++AG+ +AE +F DP + +G V +G
Sbjct: 29 GDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAEGARVAEGT 88
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-LAH-PATILETRKTAPTLRLL 124
+ +V G I+ ER+ LN +QR+SGIATLTRA + LA A IL+TRKT P LR L
Sbjct: 89 EVARVRGPLRGILAGERLALNLLQRLSGIATLTRAYVEALAGTKAQILDTRKTTPGLRAL 148
Query: 125 DKWAV 129
+K+AV
Sbjct: 149 EKYAV 153
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase,
transferase; 2.62A {Francisella tularensis subsp}
Length = 287
Score = 166 bits (422), Expect = 1e-52
Identities = 40/126 (31%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 65
GD+T A + D++ A + +E+ I+ G A + +++D ++++ W D V
Sbjct: 33 TGDIT--AQLAEDIDTTAFCITREEMILCGQDFANEVINQLDKNIQITWLYSDAQKVPAN 90
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-LAH-PATILETRKTAPTLRL 123
+ ++ G SI+ AER +LNF+Q +SG AT+T + ++ +L+TRKT P RL
Sbjct: 91 ARIFELKGNVRSILTAERTILNFIQMLSGTATVTNKLVKLISQYKTKLLDTRKTIPGFRL 150
Query: 124 LDKWAV 129
K+AV
Sbjct: 151 AQKYAV 156
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures,
ssgcid, niaid, SBRI, UWPPG, glycosyltransferase,
transferase, structural genomics; 2.25A {Burkholderia
pseudomallei}
Length = 298
Score = 164 bits (418), Expect = 7e-52
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GD T +P A + +ED ++ G+ + + VDPS++V+W ++GD +
Sbjct: 44 GDQTG-RLVPDGAPRRARVIVREDAVLCGVPWFDAVVRAVDPSIEVDWRHREGDRMSADS 102
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-LAH-PATILETRKTAPTLRLL 124
++ G A +++ AER LNF+Q +SG+A+ TR D +A A IL+TRKT P LRL
Sbjct: 103 TVCELRGPARALLTAERNALNFLQLLSGVASATRQYVDRIADTRARILDTRKTLPGLRLA 162
Query: 125 DKWAV 129
K+AV
Sbjct: 163 QKYAV 167
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 162 bits (412), Expect = 4e-51
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 4/129 (3%)
Query: 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVE--WSLKDGDHV 62
DVT +AT+P A + +E G++AG+ +A + +EV + ++DG V
Sbjct: 24 YGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARV 83
Query: 63 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-LAH-PATILETRKTAPT 120
G + + ++ AER +LN + +SGIAT T A D + A I +TRKT P
Sbjct: 84 PPGEALMTLEAQTRGLLTAERTMLNLVGHLSGIATATAAWVDAVRGTKAKIRDTRKTLPG 143
Query: 121 LRLLDKWAV 129
LR L K+AV
Sbjct: 144 LRALQKYAV 152
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel,
pyridin dicarboxylate, 5-phospho-alpha-D-ribose
1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Length = 320
Score = 161 bits (411), Expect = 1e-50
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 3/127 (2%)
Query: 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 64
A D+T + IP D A + +E G+ G A+ +F ++ + +EW ++DGD +
Sbjct: 64 PAADITA-SLIPADRISTATIITREAGVFCGQLWADEVFKQLGGQVSIEWHVQDGDTLTP 122
Query: 65 GLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-LAH-PATILETRKTAPTLR 122
++G A ++ ER +NF+Q +SG AT T L +L+TRKT P LR
Sbjct: 123 NQTLCTLTGPARILLTGERNAMNFIQTLSGCATATARYVQELKGTQCRLLDTRKTIPGLR 182
Query: 123 LLDKWAV 129
K+AV
Sbjct: 183 SALKYAV 189
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 160 bits (408), Expect = 3e-50
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 6 AGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 65
GD+T + + + +V +E+ ++ GI + E +F+ +K E KDGD K
Sbjct: 41 KGDITTNSILI-NEKVNFAINTRENLVVCGIPILEEVFNMNKEHVKYEIHKKDGDITGKN 99
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-LAH-PATILETRKTAPTLRL 123
A ++ ERV+LNF+Q SGIA++TR D ++ I TRKT P LR+
Sbjct: 100 STLVSGEALAIYLLPIERVILNFIQHASGIASITRQFVDEVSGTKVKIRSTRKTTPGLRM 159
Query: 124 LDKWAV 129
LDK++V
Sbjct: 160 LDKYSV 165
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD
biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium}
SCOP: c.1.17.1 d.41.2.1
Length = 296
Score = 160 bits (406), Expect = 4e-50
Identities = 41/130 (31%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 3 GTSAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV-DPSLKVEWSLKDGDH 61
AG+ +P D + A + +EDG+ G E +F ++ +++ W + DGD
Sbjct: 37 EVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDA 96
Query: 62 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-LAH-PATILETRKTAP 119
+H ++ G A ++ ER LNF+Q +SG+A+ R LA +L+TRKT P
Sbjct: 97 IHANQTVFELQGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLP 156
Query: 120 TLRLLDKWAV 129
LR K+AV
Sbjct: 157 GLRTALKYAV 166
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 154 bits (393), Expect = 2e-48
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
GD+ + D + A AK++G+ +G A + + ++KD +
Sbjct: 18 GDLFE-RVLEKDFKATAFVRAKQEGVFSGEKYALELLEMTGI--ECVQTIKDKERFKPKD 74
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMAD-LAH-PATILETRKTAPTLRLL 124
++ G ++ ER +LN +Q SGIATLT + L +L+TRKT P LR+
Sbjct: 75 ALMEIRGDFSMLLKVERTLLNLLQHSSGIATLTSRFVEALNSHKVRLLDTRKTRPLLRIF 134
Query: 125 DKWAV 129
+K++V
Sbjct: 135 EKYSV 139
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase, pyridine
nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
PDB: 3lar_A
Length = 299
Score = 150 bits (382), Expect = 2e-46
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
+ A + +A AK G++AG + IF +++ +V W L +G +
Sbjct: 30 PGLNYAALVSGAGPSQAALWAKSPGVLAGQPFFDAIFTQLNC--QVSWFLPEGSKLVPVA 87
Query: 67 QFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRKTAPTLR 122
+ +V G AH +++ ERV LN + R SGIA+ A + A + TRKT P R
Sbjct: 88 RVAEVRGPAHCLLLGERVALNTLARCSGIASAAAAAVEAARGAGWTGHVAGTRKTTPGFR 147
Query: 123 LLDKWAV 129
L++K+ +
Sbjct: 148 LVEKYGL 154
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 148 bits (376), Expect = 1e-45
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIA-GIALAEMIFHEVDPSLKVEWSLKDGDHVHKG 65
D+ + AH L K + ++A GI ++ M ++ +++++DG+++
Sbjct: 31 LDLASFPLR--NTTAGAHLLLKTENVVASGIEVSRMFLEKMGL--LSKFNVEDGEYLEGT 86
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTLRLLD 125
G++ G + +++AER +LN + M +AT TR A+ A I TRK P L +L
Sbjct: 87 GVIGEIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFAEKLKHAKIAATRKILPGLGVLQ 146
Query: 126 KWAV 129
K AV
Sbjct: 147 KIAV 150
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6,
mechanism, cytoplasm, glycosyltransferase, nucleus;
1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A*
3c2v_A* 3c2r_A*
Length = 294
Score = 145 bits (369), Expect = 2e-44
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
D + EA+ K+DG++ G+ A+ +F++ + +VEW K+G +
Sbjct: 28 FDFG--GYVVGSDLKEANLYCKQDGMLCGVPFAQEVFNQCEL--QVEWLFKEGSFLEPSK 83
Query: 67 QFG------KVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAH----PATILETRK 116
K++G A +I++AER LN + R SGIAT + + LA TI TRK
Sbjct: 84 NDSGKIVVAKITGPAKNILLAERTALNILSRSSGIATASHKIISLARSTGYKGTIAGTRK 143
Query: 117 TAPTLRLLDKWAV 129
T P LR L+K+++
Sbjct: 144 TTPGLRRLEKYSM 156
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding,
phosphoribosylpyrophosphate, Zn metal ION, structural
genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus}
SCOP: c.1.17.1 d.41.2.1
Length = 395
Score = 35.7 bits (83), Expect = 0.002
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 28 KEDGIIAGIA-LAEMIFHEVDPSLKVE-WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVV 85
G++ G+ +A+++ + V +++ +G H ++ G I E +
Sbjct: 57 WRWGVLVGVEEVAKLL-----EGIPVNVYAMPEGTIFHPYEPVLQIEGDYADFGIYETAL 111
Query: 86 LNFMQRMSGIATLTRAMADLAHPATILE 113
L + + SGIAT + A +
Sbjct: 112 LGMLSQASGIATAALRIKIAAKFKPVYS 139
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M
structural genomics, PSI, protein structure initiative;
2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A*
1ytk_A
Length = 398
Score = 34.2 bits (79), Expect = 0.006
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 19 MEVEAHFLAKEDGIIAGI--ALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG------K 70
ME G+ L + +VD +++ +G + G +
Sbjct: 46 MEATVSGPLDTWINFTGLDEVLKLLEGLDVD-----LYAIPEGTILFPRDANGLPVPFIR 100
Query: 71 VSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILE 113
V GR + E +L F+ + SGI+T + A +
Sbjct: 101 VEGRYCDFGMYETAILGFICQASGISTKASKVRLAAGDSPFFS 143
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural
genomics, PSI; 2.00A {Enterococcus faecalis} SCOP:
c.1.17.1 d.41.2.1
Length = 494
Score = 31.6 bits (72), Expect = 0.050
Identities = 13/60 (21%), Positives = 23/60 (38%)
Query: 54 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGIATLTRAMADLAHPATILE 113
S +GD V ++ G + E +LN + + IAT + + +LE
Sbjct: 100 RSALEGDLVFNNEPLIQIEGPLAQCQLVETALLNMVNFQTLIATKAARIKSVIGDDPLLE 159
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.13
Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 31/82 (37%)
Query: 26 LAKEDGIIAGIALAEMIFHEVDPSLKVEWSL---KDGDHVHKGLQFGKVSGRAHSIVIAE 82
L G I+ + + I P V+W H+ L FG G A
Sbjct: 468 LRVLSGSISE-RIVDCIIRL--P---VKWETTTQFKATHI---LDFG--PGGA------- 509
Query: 83 RVVLNFMQRMSGIATLTRAMAD 104
SG+ LT D
Sbjct: 510 ----------SGLGVLTHRNKD 521
>1n93_X P40 nucleoprotein; RNA virus nucleoprotein tetramer, viral protein;
1.76A {Borna disease virus} SCOP: a.206.1.1 PDB: 1pp1_X*
Length = 375
Score = 26.4 bits (57), Expect = 3.5
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 43 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAER--VVLNFMQRMSGIATLTR 100
FH V PSL L G +H G V ++ R + + G T R
Sbjct: 74 FHTVTPSLVFLCLLIPG--LHAAFVHGGVPRESYLSTPVTRGEQTVVKTAKFYGEKTTQR 131
Query: 101 AMADL 105
+ +L
Sbjct: 132 DLTEL 136
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer,
transferase; HET: FBP; 2.11A {Borrelia burgdorferi}
SCOP: c.89.1.1 PDB: 1kzh_A*
Length = 555
Score = 25.2 bits (55), Expect = 7.5
Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 5/113 (4%)
Query: 19 MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSI 78
M A +A E + + + K + + D + + ++G +
Sbjct: 251 MGRSASHVALECALKTH---PNICIVSEEVLAKKKTLSEIIDEMVSVILKRSLNGDNFGV 307
Query: 79 V-IAERVVLNFMQRMSGIATLTRAMADLAHPATILETRKTAPTL-RLLDKWAV 129
V + E ++ + S + L L K L +
Sbjct: 308 VIVPEGLIEFIPEVKSLMLELCDIFDKNEGEFKGLNIEKMKEIFVAKLSDYMK 360
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.134 0.398
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,079,991
Number of extensions: 120750
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 24
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.8 bits)