RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 033026
(129 letters)
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 122
Score = 92.3 bits (229), Expect = 5e-26
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 3 GTSAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV-DPSLKVEWSLKDGDH 61
AG+ +P D + A + +EDG+ G E +F ++ +++ W + DGD
Sbjct: 30 EVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDA 89
Query: 62 VHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 94
+H ++ G A ++ ER LNF+Q +SG
Sbjct: 90 IHANQTVFELQGPARVLLTGERTALNFVQTLSG 122
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 115
Score = 87.3 bits (216), Expect = 4e-24
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 5 SAGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKV--EWSLKDGDHV 62
DVT +AT+P A + +E G++AG+ +A + +EV + ++DG V
Sbjct: 24 YGPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARV 83
Query: 63 HKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG 94
G + + ++ AER +LN + +SG
Sbjct: 84 PPGEALMTLEAQTRGLLTAERTMLNLVGHLSG 115
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), N-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 103
Score = 70.4 bits (172), Expect = 1e-17
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 7 GDVTCMATIPLDMEVEAHFLAKEDGIIAG-IALAEMIFHEVDPSLKVEWSLKDGDHVHKG 65
D+ + AH L K + ++A I ++ M L +++++DG+++
Sbjct: 19 LDLASFPLR--NTTAGAHLLLKTENVVASGIEVSRMFLE--KMGLLSKFNVEDGEYLEGT 74
Query: 66 LQFGKVSGRAHSIVIAERVVLNFMQRMS 93
G++ G + +++AER +LN + M
Sbjct: 75 GVIGEIEGNTYKLLVAERTLLNVLSVMF 102
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 45.8 bits (108), Expect = 1e-07
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 95 IATLTRAMADLAHPATILETRKTAPTLRLLDKWAV 129
+AT TR A+ A I TRK P L +L K AV
Sbjct: 1 VATTTRRFAEKLKHAKIAATRKILPGLGVLQKIAV 35
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 167
Score = 43.1 bits (101), Expect = 1e-06
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 95 IATLTRAMADLA--HPATILETRKTAPTLRLLDKWAV 129
+A+ R L +L+TRKT P LR K+AV
Sbjct: 1 VASEVRRYVGLLAGTQTQLLDTRKTLPGLRTALKYAV 37
>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 41.6 bits (97), Expect = 3e-06
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 95 IATLTRAMADLAH--PATILETRKTAPTLRLLDKWAV 129
IAT T A D A I +TRKT P LR L K+AV
Sbjct: 1 IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAV 37
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide
pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId:
2261]}
Length = 279
Score = 36.5 bits (84), Expect = 3e-04
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 91 RMSGIATLTRAMADLAHPATILE--TRKTAPTLRLLDKWAV 129
+ SGIAT + A + R P + + A
Sbjct: 1 QASGIATAALRIKIAAKFKPVYSFGIRHMHPAIAPMIDRAA 41
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase
Ta1145 {Thermoplasma acidophilum [TaxId: 2303]}
Length = 119
Score = 28.2 bits (63), Expect = 0.18
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 19 MEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFG------KVS 72
ME G+ + +D L +++ +G + G +V
Sbjct: 40 MEATVSGPLDTWINFTGLDEVLKLLEGLDVDL---YAIPEGTILFPRDANGLPVPFIRVE 96
Query: 73 GRAHSIVIAERVVLNFMQRMSGI 95
GR + E +L F+ + SGI
Sbjct: 97 GRYCDFGMYETAILGFICQASGI 119
>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus
[TaxId: 12455]}
Length = 343
Score = 26.5 bits (58), Expect = 1.1
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 43 FHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAER 83
FH V PSL L G +H G V ++ R
Sbjct: 42 FHTVTPSLVFLCLLIPG--LHAAFVHGGVPRESYLSTPVTR 80
>d1r17a1 b.2.3.4 (A:276-424) Fibrinogen-binding adhesin SdrG
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 149
Score = 25.2 bits (55), Expect = 2.1
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 49 SLKVEWSLKDGDHVHKGLQF 68
+L + + + D V G
Sbjct: 33 NLIYDVTFEVDDKVKSGDTM 52
>d2d4pa1 d.108.1.1 (A:1-130) Hypothetical protein TTHA1254
{Thermus thermophilus [TaxId: 274]}
Length = 130
Score = 24.5 bits (53), Expect = 3.3
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 25 FLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGL 66
FLA+E G ALA+ ++ ++ V +GL
Sbjct: 38 FLAEEGEEPMGFALAQAVWQGEATTVLVTRIEGRSVEALRGL 79
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase
PF1904 {Pyrococcus furiosus [TaxId: 2261]}
Length = 110
Score = 24.0 bits (52), Expect = 4.4
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 54 WSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFM 89
+++ +G H ++ G I E +L +
Sbjct: 74 YAMPEGTIFHPYEPVLQIEGDYADFGIYETALLGML 109
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 103
Score = 23.2 bits (50), Expect = 8.8
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 26 LAKEDGIIA-------GIALAEM------IFHEVDPSLKVEWSLKDGDHVHKG 65
A DG +A G A + +D ++ + K GD V KG
Sbjct: 9 TAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGDRVQKG 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.134 0.398
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 479,894
Number of extensions: 20349
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 17
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.4 bits)