BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033028
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R9W6|TAF13_PONAB Transcription initiation factor TFIID subunit 13 OS=Pongo abelii
GN=TAF13 PE=2 SV=1
Length = 124
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 73/94 (77%), Gaps = 2/94 (2%)
Query: 26 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVE 85
KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E++T++ HKA IG + G++ VE
Sbjct: 27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 84
Query: 86 DFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 119
D ++LIRKD K R +LL+M EELK+ARKAF+
Sbjct: 85 DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
>sp|P61216|TAF13_MOUSE Transcription initiation factor TFIID subunit 13 OS=Mus musculus
GN=Taf13 PE=2 SV=1
Length = 124
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 73/94 (77%), Gaps = 2/94 (2%)
Query: 26 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVE 85
KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E++T++ HKA IG + G++ VE
Sbjct: 27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 84
Query: 86 DFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 119
D ++LIRKD K R +LL+M EELK+ARKAF+
Sbjct: 85 DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
>sp|Q15543|TAF13_HUMAN Transcription initiation factor TFIID subunit 13 OS=Homo sapiens
GN=TAF13 PE=1 SV=1
Length = 124
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 73/94 (77%), Gaps = 2/94 (2%)
Query: 26 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVE 85
KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E++T++ HKA IG + G++ VE
Sbjct: 27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 84
Query: 86 DFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 119
D ++LIRKD K R +LL+M EELK+ARKAF+
Sbjct: 85 DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
>sp|Q148M7|TAF13_BOVIN Transcription initiation factor TFIID subunit 13 OS=Bos taurus
GN=TAF13 PE=2 SV=1
Length = 124
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/94 (55%), Positives = 73/94 (77%), Gaps = 2/94 (2%)
Query: 26 KRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVE 85
KRKR +F K+L+ MMYGFGDD NP E+V ++ED+V+E++T++ HKA IG + G++ VE
Sbjct: 27 KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 84
Query: 86 DFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 119
D ++LIRKD K R +LL+M EELK+ARKAF+
Sbjct: 85 DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118
>sp|Q54CN8|TAF13_DICDI Transcription initiation factor TFIID subunit 13 OS=Dictyostelium
discoideum GN=taf13 PE=3 SV=1
Length = 106
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 68/96 (70%), Gaps = 1/96 (1%)
Query: 24 SFKRKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLS 83
S KRKR +F K+L+HMMYGFGD PL E++ L+E++V E++ ++ KA + +K GK
Sbjct: 2 STKRKR-MFSKELKHMMYGFGDVREPLHESIDLLEELVFEFIQEMTLKAAQVSNKRGKFQ 60
Query: 84 VEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFE 119
ED ++L+RKD K R ELL M EELK+A+KAF+
Sbjct: 61 TEDLVFLVRKDPKKYYRVIELLRMNEELKKAKKAFD 96
>sp|O60076|TAF13_SCHPO Transcription initiation factor TFIID subunit 13
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf13 PE=3 SV=3
Length = 111
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 62/97 (63%)
Query: 27 RKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVED 86
R++ +F KDL+ +MY FGDD NP P+++ ++E+IVV+Y+ ++ +A I K+ V+D
Sbjct: 13 RRQHLFTKDLKSLMYAFGDDVNPAPDSINVLEEIVVDYINEMCLEAARIAGNRNKVKVDD 72
Query: 87 FLYLIRKDLPKLNRCTELLSMQEELKQARKAFEVDEE 123
F + +R D KL R ELL +Q+ + R + +++
Sbjct: 73 FKFALRDDPKKLGRVEELLVLQKMIADTRNVMKYNKD 109
>sp|P11747|TAF13_YEAST Transcription initiation factor TFIID subunit 13 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF13 PE=1
SV=2
Length = 167
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 27 RKRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLA----HKAQDIGSKGGKL 82
+K +F KD+ ++Y +GD P PL TV ++++V Y+ D+ H AQ+ S+ KL
Sbjct: 6 KKTNLFNKDVSSLLYAYGDVPQPLQATVQCLDELVSGYLVDVCTNAFHTAQN--SQRNKL 63
Query: 83 SVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAF-EVDEE 123
+EDF + +RKD KL R EL++ + + +A+K F E D +
Sbjct: 64 RLEDFKFALRKDPIKLGRAEELIATNKLITEAKKQFNETDNQ 105
>sp|O14311|SPT3_SCHPO SAGA complex subunit spt3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=spt3 PE=1 SV=2
Length = 307
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 32 FQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLY 89
++ ++Q MM+ G+ +PLPET LVE+++ V ++ +A ++ + G ++VED +
Sbjct: 10 YRVEIQQMMFILGEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSRSITVEDLFF 69
Query: 90 LIRKDLPKLNRCTELLSMQEELKQARK 116
LIR D K+NR LS +E K+A++
Sbjct: 70 LIRHDRAKVNRLKTYLSWKEVRKKAKE 96
>sp|O75486|SUPT3_HUMAN Transcription initiation protein SPT3 homolog OS=Homo sapiens
GN=SUPT3H PE=1 SV=2
Length = 399
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 14 AGSSQPYETTSFKRKRG---VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAH 70
A S T+S R G F +LQ MMY GD PL ET LVED+V + +L
Sbjct: 87 AASPMSTATSSSGRSTGKSISFATELQSMMYSLGDARRPLHETAVLVEDVVHTQLINLLQ 146
Query: 71 KAQDIGSKGGK--LSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFEVD---EEKL 125
+A ++ G ++ ED L+L+RKD KL R + + +++ + K + D E+KL
Sbjct: 147 QAAEVSQLRGARVITPEDLLFLMRKDKKKLRRLLKYMFIRDYKSKIVKGIDEDDLLEDKL 206
Query: 126 A 126
+
Sbjct: 207 S 207
>sp|O13472|SPT3_KLULA Protein SPT3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SPT3 PE=3
SV=1
Length = 328
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 32 FQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSV--EDFLY 89
++ ++Q MM+ G++ P ET +L+EDIV V ++ +A + G S+ ED ++
Sbjct: 7 YRVEIQQMMFVSGENNEPPVETTSLIEDIVRGQVVEILLQATRTANCRGSKSIVPEDVIF 66
Query: 90 LIRKDLPKLNRCTELLSMQE 109
LIR D K+NR LS ++
Sbjct: 67 LIRHDKAKVNRLRTYLSWKD 86
>sp|P06844|SPT3_YEAST Protein SPT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SPT3 PE=1 SV=1
Length = 337
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 32 FQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSV--EDFLY 89
++ ++Q MM+ G+ +P ET +L+EDIV V ++ ++ G S+ ED ++
Sbjct: 7 YRVEIQQMMFVSGEINDPPVETTSLIEDIVRGQVIEILLQSNKTAHLRGSRSILPEDVIF 66
Query: 90 LIRKDLPKLNRCTELLSMQEELKQAR 115
LIR D K+NR LS ++ K A+
Sbjct: 67 LIRHDKAKVNRLRTYLSWKDLRKNAK 92
>sp|Q89AY1|DAPE_BUCBP Succinyl-diaminopimelate desuccinylase OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=dapE PE=3 SV=1
Length = 377
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 48 NPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--------KLSVEDF-LYLIRKDLPKL 98
NP V L+ DIVV V +L H + ++ + GG +L + L LI K + K
Sbjct: 292 NPFLTKVGLLSDIVVRSVEELCHISPNLSTSGGTSDGRFIAELGSQIIELGLINKTIHKA 351
Query: 99 NRCTEL 104
N C E+
Sbjct: 352 NECVEI 357
>sp|O14214|TRM10_SCHPO tRNA (guanine(9)-N1)-methyltransferase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=trm10 PE=1 SV=1
Length = 304
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 32 FQKDLQHMMYGFGDDPNPLPE----TVALVEDIV--VEYVTDLAHKAQDIGSKGGKLSVE 85
F+ + ++Y D N + E + ++ IV Y +KA + G K KL ++
Sbjct: 173 FESQKEKLVYLSADSDNTITELDEDKIYIIGAIVDKNRYKNLCQNKASEQGIKTAKLPID 232
Query: 86 DFLYLIRKDLPKLNRCTELLSMQEELKQARKAF 118
+++ + + + +N+ E+LS+ E + KAF
Sbjct: 233 EYIKITDRKILTVNQVFEILSLWLEYRDWEKAF 265
>sp|Q6C1W9|TRM10_YARLI tRNA (guanine(9)-N1)-methyltransferase OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=TRM10 PE=3 SV=1
Length = 371
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 71 KAQDIGSKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFEV 120
KA G + G+L + DF+ L + + N E+L ELK + AFE
Sbjct: 242 KASKQGLQTGRLPIADFIKLSGRKVLTTNHVFEILLKWTELKDWKAAFEA 291
>sp|Q9C5J6|IPT9_ARATH tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9
PE=2 SV=1
Length = 463
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 36 LQHMMYGFGDDPNPLPETVALVEDIVVEYVTD 67
L+ MYG D P P PE +A D++V + T+
Sbjct: 152 LRWFMYGKPDVPKPSPEVIAEAHDMLVGFQTE 183
>sp|A2ALK8|PTN3_MOUSE Tyrosine-protein phosphatase non-receptor type 3 OS=Mus musculus
GN=Ptpn3 PE=2 SV=1
Length = 913
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 41 YGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLP 96
+G DD + E V V + V+ L H + IG G +++E + LI ++LP
Sbjct: 812 HGVPDDSSDFLEFVKYVRSLRVDGEPALVHCSAGIGRTGVLVTMETAMCLIERNLP 867
>sp|Q0CC19|MET3_ASPTN Sulfate adenylyltransferase OS=Aspergillus terreus (strain NIH 2624
/ FGSC A1156) GN=met3 PE=3 SV=1
Length = 574
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 17 SQPYETTSFKRKRGVFQKDLQHMMYGFG--DDPNPLPETVALVEDIVVEYVTDLAHK 71
+ P E KRG++ K + + GF DDP PE LV D+ + V + H+
Sbjct: 504 NTPLEYCEKTDKRGIYAKARRGEIKGFTGVDDPYEAPENADLVVDVSKQSVRSIVHE 560
>sp|P56862|MET3_ASPTE Sulfate adenylyltransferase OS=Aspergillus terreus GN=met3 PE=3
SV=1
Length = 568
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 17 SQPYETTSFKRKRGVFQKDLQHMMYGFG--DDPNPLPETVALVEDIVVEYVTDLAHK 71
+ P E KRG++ K + + GF DDP PE LV D+ + V + H+
Sbjct: 498 NTPLEYCEKTDKRGIYAKARRGEIKGFTGVDDPYEAPENADLVVDVSKQSVRSIVHE 554
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,307,229
Number of Sequences: 539616
Number of extensions: 1962902
Number of successful extensions: 4344
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4314
Number of HSP's gapped (non-prelim): 33
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)