Query 033028
Match_columns 129
No_of_seqs 105 out of 238
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bh9_A TAFII18; histone fold, 99.8 1.8E-21 6.1E-26 120.9 6.3 45 31-75 1-45 (45)
2 3b0b_B CENP-S, centromere prot 98.2 6E-06 2E-10 59.1 7.4 71 36-106 25-99 (107)
3 3b0c_T CENP-T, centromere prot 97.4 0.00045 1.5E-08 49.2 6.6 63 33-96 10-74 (111)
4 1id3_B Histone H4; nucleosome 96.9 0.0019 6.7E-08 45.2 5.7 64 30-94 28-93 (102)
5 2yfw_B Histone H4, H4; cell cy 96.9 0.0021 7.1E-08 44.9 5.7 64 30-94 29-94 (103)
6 1tzy_D Histone H4-VI; histone- 96.9 0.0021 7.2E-08 44.8 5.7 65 29-94 28-94 (103)
7 1ku5_A HPHA, archaeal histon; 96.9 0.0024 8.2E-08 41.4 5.6 48 46-93 21-70 (70)
8 3v9r_A MHF1, uncharacterized p 96.8 0.0026 8.8E-08 44.0 6.0 52 47-98 31-84 (90)
9 4dra_A Centromere protein S; D 96.8 0.0046 1.6E-07 44.5 7.4 59 47-105 46-106 (113)
10 2hue_C Histone H4; mini beta s 96.8 0.0033 1.1E-07 42.3 6.3 65 29-94 9-75 (84)
11 3vh5_A CENP-S; histone fold, c 96.7 0.0057 1.9E-07 45.5 7.6 60 47-106 38-99 (140)
12 1h3o_B Transcription initiatio 96.7 0.0069 2.3E-07 40.7 7.0 59 36-94 11-71 (76)
13 2byk_A Chrac-16; nucleosome sl 96.6 0.0033 1.1E-07 46.4 5.6 62 33-94 22-86 (140)
14 1n1j_A NF-YB; histone-like PAI 96.6 0.0083 2.8E-07 40.8 7.1 77 33-113 11-90 (93)
15 1jfi_B DR1 protein, transcript 96.6 0.035 1.2E-06 42.6 11.3 63 31-93 16-80 (179)
16 2byk_B Chrac-14; nucleosome sl 96.4 0.014 4.6E-07 42.4 7.3 59 36-94 15-76 (128)
17 1b67_A Protein (histone HMFA); 96.3 0.015 5E-07 37.2 6.4 49 45-93 16-66 (68)
18 1n1j_B NF-YC; histone-like PAI 96.2 0.018 6.1E-07 39.6 7.1 64 33-96 22-87 (97)
19 1taf_A TFIID TBP associated fa 95.8 0.045 1.5E-06 35.9 7.0 57 36-93 7-65 (68)
20 2ly8_A Budding yeast chaperone 95.5 0.028 9.7E-07 40.7 5.8 52 44-95 60-113 (121)
21 3b0c_W CENP-W, centromere prot 95.4 0.035 1.2E-06 36.5 5.4 60 33-93 7-69 (76)
22 4g92_C HAPE; transcription fac 94.9 0.07 2.4E-06 38.0 6.3 65 31-95 42-108 (119)
23 1jfi_A Transcription regulator 94.7 0.057 1.9E-06 37.2 5.3 72 33-105 14-87 (98)
24 1f1e_A Histone fold protein; a 94.5 0.059 2E-06 40.4 5.3 50 48-97 99-150 (154)
25 1taf_B TFIID TBP associated fa 93.9 0.17 5.8E-06 33.3 6.0 56 36-92 12-69 (70)
26 1f1e_A Histone fold protein; a 93.6 0.18 6.1E-06 37.7 6.4 56 35-91 9-67 (154)
27 2l5a_A Histone H3-like centrom 92.7 0.28 9.6E-06 39.1 6.5 51 44-94 174-226 (235)
28 3nqu_A Histone H3-like centrom 89.9 0.67 2.3E-05 34.3 5.7 46 47-92 84-131 (140)
29 1tzy_B Histone H2B; histone-fo 89.6 1.5 5E-05 32.0 7.2 66 28-93 34-101 (126)
30 2hue_B Histone H3; mini beta s 89.6 1.1 3.7E-05 29.9 6.1 63 30-92 7-71 (77)
31 4dra_E Centromere protein X; D 89.5 0.85 2.9E-05 31.0 5.5 46 44-89 28-75 (84)
32 2nqb_D Histone H2B; nucleosome 89.0 1.8 6.2E-05 31.4 7.3 66 28-93 31-98 (123)
33 2jss_A Chimera of histone H2B. 88.8 2.9 0.0001 31.6 8.8 64 30-93 3-68 (192)
34 3vlf_B 26S protease regulatory 88.6 0.32 1.1E-05 32.0 2.9 49 60-108 35-88 (88)
35 2f8n_G Core histone macro-H2A. 88.3 1.4 4.9E-05 31.3 6.4 64 33-96 25-90 (120)
36 3r45_A Histone H3-like centrom 87.5 1.4 4.8E-05 33.2 6.1 46 47-92 100-147 (156)
37 1tzy_C Histone H3; histone-fol 86.9 2.2 7.4E-05 31.3 6.8 55 38-92 74-130 (136)
38 3b0b_C CENP-X, centromere prot 86.8 1.7 5.9E-05 29.1 5.7 54 36-89 14-71 (81)
39 2yfv_A Histone H3-like centrom 86.6 1.7 5.8E-05 30.2 5.8 63 30-92 31-98 (100)
40 3nqj_A Histone H3-like centrom 83.3 3.5 0.00012 27.7 5.9 62 31-92 8-73 (82)
41 2nqb_C Histone H2A; nucleosome 81.4 4.7 0.00016 28.7 6.4 64 33-96 26-91 (123)
42 1f66_C Histone H2A.Z; nucleoso 80.9 4.8 0.00016 28.9 6.3 64 33-96 30-96 (128)
43 2f8n_K Histone H2A type 1; nuc 79.9 4.5 0.00016 29.9 6.1 64 33-96 47-112 (149)
44 1tzy_A Histone H2A-IV; histone 79.4 5.7 0.0002 28.5 6.3 64 33-96 28-93 (129)
45 1id3_C Histone H2A.1; nucleoso 78.3 4.9 0.00017 29.0 5.7 64 33-96 28-93 (131)
46 3kw6_A 26S protease regulatory 75.1 2.8 9.5E-05 26.4 3.3 43 51-93 28-72 (78)
47 3aji_B S6C, proteasome (prosom 73.1 4.6 0.00016 25.5 4.0 41 54-94 29-71 (83)
48 2jss_A Chimera of histone H2B. 72.1 12 0.0004 28.3 6.6 41 56-96 132-174 (192)
49 2dzn_B 26S protease regulatory 69.0 4.6 0.00016 25.8 3.3 37 58-94 30-68 (82)
50 2jx0_A ARF GTPase-activating p 68.6 5.5 0.00019 29.2 3.9 39 37-75 2-40 (135)
51 2krk_A 26S protease regulatory 68.4 4.7 0.00016 26.3 3.3 44 50-93 35-80 (86)
52 1wh7_A ZF-HD homeobox family p 59.5 9.1 0.00031 24.8 3.4 32 24-55 16-52 (80)
53 2cuj_A Transcriptional adaptor 50.0 32 0.0011 23.8 5.1 29 78-106 72-100 (108)
54 4b4t_H 26S protease regulatory 43.3 12 0.0004 32.2 2.3 53 56-108 410-467 (467)
55 2i5u_A DNAD domain protein; st 40.8 69 0.0024 20.4 5.8 40 41-83 11-59 (83)
56 1bh9_B TAFII28; histone fold, 39.0 84 0.0029 20.9 7.0 58 35-93 21-81 (89)
57 2kt0_A Nanog, homeobox protein 37.7 71 0.0024 20.0 5.0 32 24-55 21-53 (84)
58 3v9r_B MHF2, uncharacterized p 35.5 45 0.0015 22.7 3.8 45 44-88 17-70 (88)
59 1vej_A Riken cDNA 4931431F19; 34.5 36 0.0012 22.1 3.2 16 30-45 27-43 (74)
60 1dgu_A Calcium-saturated CIB; 33.5 89 0.003 21.0 5.3 19 78-96 156-174 (183)
61 2aqe_A Transcriptional adaptor 33.0 36 0.0012 22.6 3.0 30 78-107 54-83 (90)
62 4ayb_Q DNA-directed RNA polyme 32.9 12 0.00043 25.9 0.7 36 82-121 36-71 (104)
63 4b4t_J 26S protease regulatory 32.8 36 0.0012 28.5 3.6 38 56-93 349-388 (405)
64 2wx4_A DCP1, decapping protein 32.7 34 0.0012 20.7 2.5 20 84-103 15-34 (46)
65 1wh5_A ZF-HD homeobox family p 32.6 78 0.0027 20.1 4.6 33 23-55 15-52 (80)
66 2a7o_A Huntingtin interacting 30.5 1.2E+02 0.004 21.5 5.4 44 50-93 11-59 (112)
67 2elj_A Transcriptional adapter 29.6 1.1E+02 0.0037 20.1 5.0 28 79-106 55-83 (88)
68 4b4t_L 26S protease subunit RP 28.6 48 0.0016 27.9 3.7 36 58-93 384-421 (437)
69 2wx3_A MRNA-decapping enzyme 1 28.6 46 0.0016 20.5 2.7 20 84-103 17-36 (51)
70 4b4t_I 26S protease regulatory 28.0 50 0.0017 28.1 3.7 38 56-93 383-422 (437)
71 4b4t_M 26S protease regulatory 25.7 46 0.0016 28.0 3.1 41 54-94 380-422 (434)
72 1upk_A MO25 protein; transfera 25.5 61 0.0021 26.9 3.7 37 32-69 46-83 (341)
73 2di4_A Zinc protease, cell div 25.5 2.3E+02 0.0079 21.8 7.8 26 48-73 142-167 (238)
74 1u5t_A Appears to BE functiona 25.2 1E+02 0.0036 24.0 4.9 73 31-116 59-140 (233)
75 4a6d_A Hydroxyindole O-methylt 25.1 2.4E+02 0.0083 21.9 7.6 61 49-109 4-71 (353)
76 1lv7_A FTSH; alpha/beta domain 24.3 74 0.0025 23.2 3.7 34 60-93 216-251 (257)
77 3fes_A ATP-dependent CLP endop 24.2 71 0.0024 21.8 3.4 34 63-96 84-119 (145)
78 2qez_A Ethanolamine ammonia-ly 23.6 33 0.0011 29.6 1.8 33 28-60 171-206 (455)
79 2l4h_A Calcium and integrin-bi 23.2 1.1E+02 0.0038 21.8 4.5 19 78-96 187-205 (214)
80 3cuq_A Vacuolar-sorting protei 23.2 97 0.0033 24.2 4.3 78 31-116 39-126 (234)
81 3h4m_A Proteasome-activating n 23.2 74 0.0025 23.4 3.5 38 56-93 218-257 (285)
82 2jmf_B Neurogenic locus notch 22.9 46 0.0016 17.5 1.6 15 7-21 1-15 (26)
83 3hl1_A Ferritin like protein; 22.6 93 0.0032 25.5 4.3 38 41-81 34-71 (317)
84 3abq_A Ethanolamine ammonia-ly 22.5 33 0.0011 29.6 1.6 33 28-60 170-205 (453)
85 3a01_A Homeodomain-containing 22.1 1.4E+02 0.0048 19.2 4.4 33 23-55 15-48 (93)
86 2agh_C Zinc finger protein HRX 21.7 45 0.0015 18.3 1.5 16 80-95 4-20 (31)
87 2dmt_A Homeobox protein BARH-l 21.5 1.5E+02 0.0052 18.3 5.2 32 25-56 17-49 (80)
88 1k6k_A ATP-dependent CLP prote 21.1 1E+02 0.0035 20.6 3.7 34 63-96 4-39 (143)
89 3j04_B Myosin regulatory light 20.9 1E+02 0.0034 19.6 3.5 19 78-96 125-143 (143)
90 1k94_A Grancalcin; penta-EF-ha 20.9 1.8E+02 0.0063 19.0 6.1 16 78-93 117-132 (165)
91 3fh2_A Probable ATP-dependent 20.7 1.1E+02 0.0037 20.8 3.8 31 65-95 86-118 (146)
92 2l5a_A Histone H3-like centrom 20.1 3.2E+02 0.011 21.4 10.0 94 28-122 13-122 (235)
No 1
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=99.84 E-value=1.8e-21 Score=120.91 Aligned_cols=45 Identities=53% Similarity=1.053 Sum_probs=43.3
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033028 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDI 75 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~ 75 (129)
+|++||++|||||||+++|++||+.+|||||++||+++|++|.++
T Consensus 1 lF~~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~v 45 (45)
T 1bh9_A 1 LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSI 45 (45)
T ss_dssp CCHHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999864
No 2
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.17 E-value=6e-06 Score=59.05 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=60.1
Q ss_pred HHHHHhhhCC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhChhhHhHHHHHHH
Q 033028 36 LQHMMYGFGD--DPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLPKLNRCTELLS 106 (129)
Q Consensus 36 I~~mMy~fGD--~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D~~Kl~Rl~~lL~ 106 (129)
|..+.=-.|. ...-.++++..|.+++..|+.+++..|...|...|+ |+.||+.+++|++|..+++|++++.
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~~~~~ 99 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSD 99 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHHHHHH
Confidence 4444444443 246889999999999999999999999999987665 9999999999999999999999875
No 3
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=97.38 E-value=0.00045 Score=49.18 Aligned_cols=63 Identities=11% Similarity=0.245 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhChh
Q 033028 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D~~ 96 (129)
..-|..+|--+|. ..-..++...+.+++.+|+.+++..|...|...|+ |+.+|+++++|+++.
T Consensus 10 ~a~I~Ri~r~~g~-~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 10 SSLIKQIFSHYVK-TPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp CHHHHHHHHHHHC-SCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 3457777766665 67888999999999999999999999999976554 999999999999753
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.88 E-value=0.0019 Score=45.22 Aligned_cols=64 Identities=8% Similarity=0.174 Sum_probs=53.8
Q ss_pred cccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhhC
Q 033028 30 GVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKD 94 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~D 94 (129)
++=..-|+.++--.|- ..-..+....+.++|.+|+.+++..|..++...+ .|+.+|+.++|++.
T Consensus 28 ~ip~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 28 GITKPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3445668888877774 7788899999999999999999999999997644 49999999999964
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=96.86 E-value=0.0021 Score=44.95 Aligned_cols=64 Identities=9% Similarity=0.193 Sum_probs=53.0
Q ss_pred cccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhhC
Q 033028 30 GVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKD 94 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~D 94 (129)
++=..-|..++--.|- ..-..+....+.++|..|+.+++..|...|...+ .|+.+|+.++||+.
T Consensus 29 gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 29 GITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp -CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3345668888887776 6778889999999999999999999999987544 49999999999964
No 6
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=96.85 E-value=0.0021 Score=44.84 Aligned_cols=65 Identities=8% Similarity=0.178 Sum_probs=55.5
Q ss_pred ccccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhhC
Q 033028 29 RGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKD 94 (129)
Q Consensus 29 k~~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~D 94 (129)
+++-..-|..++--.|- ..-..+....+.++|..|+.+++..|...|...+ .|+.+||.++||+.
T Consensus 28 ~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 28 QGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp GGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 45557788999988775 6788899999999999999999999999987544 49999999999975
No 7
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=96.85 E-value=0.0024 Score=41.36 Aligned_cols=48 Identities=21% Similarity=0.408 Sum_probs=43.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 46 DPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 46 ~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
+..-.++.+..+.+++..|+.+++..|..+|...|+ |+.+|+.+++|+
T Consensus 21 ~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 21 AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 577899999999999999999999999999987655 999999999874
No 8
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0026 Score=44.03 Aligned_cols=52 Identities=12% Similarity=0.225 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhChhhH
Q 033028 47 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLPKL 98 (129)
Q Consensus 47 ~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D~~Kl 98 (129)
.+..++++..+-+++-+|+.++...+...|...|+ |+.||+..++|++|.=+
T Consensus 31 ~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~ 84 (90)
T 3v9r_A 31 IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQ 84 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHH
Confidence 46899999999999999999999999999987665 99999999999998643
No 9
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=96.82 E-value=0.0046 Score=44.53 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=50.9
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhChhhHhHHHHHH
Q 033028 47 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLPKLNRCTELL 105 (129)
Q Consensus 47 ~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D~~Kl~Rl~~lL 105 (129)
....++++..|-+++-.|+.++...+...|...|+ |+.||+..++|++|.=+.=|+++.
T Consensus 46 ~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~~~~ 106 (113)
T 4dra_A 46 MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKS 106 (113)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHHHHH
Confidence 45899999999999999999999999999986665 999999999999987665555544
No 10
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=96.81 E-value=0.0033 Score=42.33 Aligned_cols=65 Identities=8% Similarity=0.192 Sum_probs=54.7
Q ss_pred ccccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhC
Q 033028 29 RGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 94 (129)
Q Consensus 29 k~~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D 94 (129)
+++-..-|+.++-..|- ..-..+....+.+++..|+.++++.|...+...|+ ++.+|+.++|++.
T Consensus 9 ~~ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 9 QGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CSSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 44556668888877775 77888999999999999999999999999976554 9999999999964
No 11
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=96.75 E-value=0.0057 Score=45.54 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhChhhHhHHHHHHH
Q 033028 47 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLPKLNRCTELLS 106 (129)
Q Consensus 47 ~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D~~Kl~Rl~~lL~ 106 (129)
....++++..|-+++-.|+.++...+...|...|+ |+.||+..++|++|.=+.-|+++..
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~~ 99 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQKSD 99 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHHH
Confidence 45789999999999999999999999999987665 9999999999999987777777664
No 12
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=96.69 E-value=0.0069 Score=40.72 Aligned_cols=59 Identities=12% Similarity=0.232 Sum_probs=47.0
Q ss_pred HHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhC
Q 033028 36 LQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 94 (129)
Q Consensus 36 I~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D 94 (129)
|+.|+--..=.....++.-.++-+|.-+||-+++..|+++|..||. +.+.|+.|.|.+.
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 4444433333456677777799999999999999999999999986 8999999998763
No 13
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.63 E-value=0.0033 Score=46.44 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=49.8
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhh-hcCC--CCchhHHHHHHhhC
Q 033028 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIG-SKGG--KLSVEDFLYLIRKD 94 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A-~~Rg--kis~eDl~F~lR~D 94 (129)
..=|+.+|-.-.|+..-..++.-+|-..+--||..|+..|..+| ...+ .|+.+||..+++++
T Consensus 22 laRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 22 LSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp -------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred HHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 34477888888899999999999999999999999999999999 5433 49999999999986
No 14
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.61 E-value=0.0083 Score=40.77 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=59.6
Q ss_pred HHHHHHHHhhhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhhChhhHhHHHHHHHHHH
Q 033028 33 QKDLQHMMYGFG-DDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKDLPKLNRCTELLSMQE 109 (129)
Q Consensus 33 ~~EI~~mMy~fG-D~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~D~~Kl~Rl~~lL~~k~ 109 (129)
..-|+.+|-.-| |+..-..|+..++-+.+..||..|...|..+|...+ .|+.+|+..+++ .++-..++.-++.
T Consensus 11 ~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~----~l~F~~~i~~~~~ 86 (93)
T 1n1j_A 11 IANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS----TLGFDSYVEPLKL 86 (93)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH----HTTCGGGHHHHHH
T ss_pred hhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH----HcCcHhhHHHHHH
Confidence 344677777764 567889999999999999999999999999987544 499999999997 5555555555555
Q ss_pred HHHH
Q 033028 110 ELKQ 113 (129)
Q Consensus 110 ~ik~ 113 (129)
.+.+
T Consensus 87 ~l~~ 90 (93)
T 1n1j_A 87 YLQK 90 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 15
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.59 E-value=0.035 Score=42.63 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=55.1
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
+=..-|..+|-..|....-..|+..+|-+.+.+||..|...|..+|...|+ |+.+||+.+|..
T Consensus 16 LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 16 IPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp CCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 446678888988886678899999999999999999999999999876554 999999999995
No 16
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=96.36 E-value=0.014 Score=42.40 Aligned_cols=59 Identities=8% Similarity=0.140 Sum_probs=51.4
Q ss_pred HHHHHhhh-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhhC
Q 033028 36 LQHMMYGF-GDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKD 94 (129)
Q Consensus 36 I~~mMy~f-GD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~D 94 (129)
|..+|-.. -|...-..++..+|-+.+..||..|+..|..+|...+ .|+.+||+.+|...
T Consensus 15 I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 15 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 67788744 4778899999999999999999999999999987644 49999999999975
No 17
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=96.27 E-value=0.015 Score=37.17 Aligned_cols=49 Identities=12% Similarity=0.212 Sum_probs=43.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 45 DDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 45 D~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
+...-..++..++.+.+..||..+...|..+|...++ |+.+||..++|.
T Consensus 16 ~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 16 GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3467889999999999999999999999999976554 999999999874
No 18
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=96.24 E-value=0.018 Score=39.58 Aligned_cols=64 Identities=17% Similarity=0.070 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhChh
Q 033028 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D~~ 96 (129)
..=|+.+|-.-+|+..-..++.-++-..+-.|+.+|+..|...|...++ |+.+||..+++++..
T Consensus 22 ~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~ 87 (97)
T 1n1j_B 22 LARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQ 87 (97)
T ss_dssp HHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGG
T ss_pred HHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcH
Confidence 6678999999999999999999999999999999999999999875443 999999999999864
No 19
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.77 E-value=0.045 Score=35.86 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=46.8
Q ss_pred HHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 36 LQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 36 I~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
|..++--.|= .+=.+..+..+-|++..|..+++..|..+|...|+ |+.||+..+++.
T Consensus 7 i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 7 IMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 4455555565 56678888889999999999999999999987775 999999998864
No 20
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.028 Score=40.74 Aligned_cols=52 Identities=6% Similarity=0.114 Sum_probs=41.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhhCh
Q 033028 44 GDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKDL 95 (129)
Q Consensus 44 GD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~D~ 95 (129)
|.++.-..+...-+-+++.+|+.+++..|..++...| .++.+|+.|++++--
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 4556666777777888888899999999998886544 499999999998754
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=95.36 E-value=0.035 Score=36.47 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=49.0
Q ss_pred HHHHHHHHh-hhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhh
Q 033028 33 QKDLQHMMY-GFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRK 93 (129)
Q Consensus 33 ~~EI~~mMy-~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~ 93 (129)
..=|..+|= ..+| ..-..|+..+|-+.+.+||..|..+|.+.|...| -|+.+|+..+++.
T Consensus 7 ~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 7 RGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp HHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 344666666 5576 4567899999999999999999999999987544 4999999999875
No 22
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=94.92 E-value=0.07 Score=37.99 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=57.0
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhhCh
Q 033028 31 VFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKDL 95 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~D~ 95 (129)
+=..=|+.+|-.-.|+..-..++.-++-..+-.||.+|+..|...|...+ .|+.+||.-+++++.
T Consensus 42 lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e 108 (119)
T 4g92_C 42 LPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSD 108 (119)
T ss_dssp SCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred CCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCc
Confidence 33566899998878888999999999999999999999999999987544 399999999999985
No 23
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=94.72 E-value=0.057 Score=37.19 Aligned_cols=72 Identities=7% Similarity=0.042 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhhChhhHhHHHHHH
Q 033028 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKDLPKLNRCTELL 105 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~D~~Kl~Rl~~lL 105 (129)
..=|..+|-.-+|+..-..++.-++-..+--|+.+|+..|.+.|...+ .|+.+||.-++++|. .|..|.+++
T Consensus 14 vaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e-~l~FL~div 87 (98)
T 1jfi_A 14 PARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEG-DPAANKARK 87 (98)
T ss_dssp HHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-------------
T ss_pred hHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCc-hhhHHHhcC
Confidence 667999999999999999999999999999999999999999987544 499999999999864 334444433
No 24
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=94.52 E-value=0.059 Score=40.39 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=42.6
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhChhh
Q 033028 48 NPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLPK 97 (129)
Q Consensus 48 ~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D~~K 97 (129)
.-..+....+-+++.+|+..++..|...|...|+ |+.+|+.++++++--|
T Consensus 99 RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 99 RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 4456788899999999999999999999986554 9999999999987443
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=93.92 E-value=0.17 Score=33.26 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=44.7
Q ss_pred HHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCchhHHHHHHh
Q 033028 36 LQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIR 92 (129)
Q Consensus 36 I~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~--Rgkis~eDl~F~lR 92 (129)
|..+-=..|= .+-.+|....+=+-|-.++.++++.|.+++.. |.+++++||-.+||
T Consensus 12 v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 12 MKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4444444554 56778888899999999999999999999864 55699999998886
No 26
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=93.62 E-value=0.18 Score=37.75 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=48.7
Q ss_pred HHHHHHhhh-CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHH
Q 033028 35 DLQHMMYGF-GDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLI 91 (129)
Q Consensus 35 EI~~mMy~f-GD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~l 91 (129)
-|..+|--. |+ ..-..+....+-+.+.+|+..+...|...|...|+ |+.+|+++++
T Consensus 9 ~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 9 AIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp HHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 355555555 88 78999999999999999999999999999987665 9999999999
No 27
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.28 Score=39.13 Aligned_cols=51 Identities=8% Similarity=0.173 Sum_probs=44.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhhC
Q 033028 44 GDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRKD 94 (129)
Q Consensus 44 GD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~D 94 (129)
|.++.-..+...-+-+++..|+.+++..|..++...| .++.+|+.|++++-
T Consensus 174 gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 174 GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 4567888888899999999999999999999987544 49999999999864
No 28
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=89.89 E-value=0.67 Score=34.29 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=39.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHh
Q 033028 47 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 92 (129)
Q Consensus 47 ~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR 92 (129)
-.=..+.+..+.|..-.|+.+|...|..+|...++ |..+|+-.+.|
T Consensus 84 ~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 84 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 45567888999999999999999999999987665 88999987765
No 29
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=89.60 E-value=1.5 Score=31.95 Aligned_cols=66 Identities=8% Similarity=0.190 Sum_probs=53.6
Q ss_pred cccccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 28 KRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 28 kk~~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
++..|.-=|-.+|--.+=..--..++..+|..+|.+..-.|..+|..+|...++ |+..||-.++|-
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 101 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL 101 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 446777777777765554345789999999999999999999999999976544 999999999984
No 30
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=89.57 E-value=1.1 Score=29.85 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=49.5
Q ss_pred cccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHh
Q 033028 30 GVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 92 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR 92 (129)
-.|..=++.+.--|.....=..+.+..+.+..-.|+.++...|..+|...|+ |..+|+-.+.|
T Consensus 7 ~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 7 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp HHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 3455555555555544456677888899999999999999999999987776 88999988876
No 31
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=89.47 E-value=0.85 Score=30.97 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=39.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHH
Q 033028 44 GDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLY 89 (129)
Q Consensus 44 GD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F 89 (129)
+|...-..+++.++-+++.-|+.+-+.+|...|...| .+.++||.=
T Consensus 28 ~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 28 DDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp STTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 3667789999999999999999999999999887554 488998853
No 32
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=89.04 E-value=1.8 Score=31.35 Aligned_cols=66 Identities=8% Similarity=0.194 Sum_probs=53.6
Q ss_pred cccccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 28 KRGVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 28 kk~~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
++..|.-=|-.+|--.+=..--..++..+|..+|.+..-.+..+|..+|...++ |+..||-.++|-
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL 98 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRL 98 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence 456787777777765553345678999999999999999999999999975544 999999999984
No 33
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=88.77 E-value=2.9 Score=31.65 Aligned_cols=64 Identities=9% Similarity=0.196 Sum_probs=49.7
Q ss_pred cccHHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhh
Q 033028 30 GVFQKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRK 93 (129)
Q Consensus 30 ~~f~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~ 93 (129)
..|..=|..++---+=...-..+++.+|+.++.+.+.-++.+|.+++...+ .++..||..++|-
T Consensus 3 ~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 3 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp STTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 345555555554444335589999999999999999999999999996544 4999999999984
No 34
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=88.62 E-value=0.32 Score=32.02 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh---ChhhHhHHHHHHHHH
Q 033028 60 IVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK---DLPKLNRCTELLSMQ 108 (129)
Q Consensus 60 Iv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~---D~~Kl~Rl~~lL~~k 108 (129)
+.---|..+|.+|.-.|-+++. |+.+||.-++++ .+.|-++...|+.|+
T Consensus 35 ~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 35 STGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC---------------
T ss_pred CcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 3344588999999988876653 999999999985 345667788888775
No 35
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=88.34 E-value=1.4 Score=31.33 Aligned_cols=64 Identities=6% Similarity=0.026 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCchhHHHHHHhhChh
Q 033028 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDLP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~--Rgkis~eDl~F~lR~D~~ 96 (129)
..-|..+|---++...-...+.-++-.++-.+..+++..|.+.|.. +..|+.+||..++|+|..
T Consensus 25 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeE 90 (120)
T 2f8n_G 25 VGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEE 90 (120)
T ss_dssp HHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred hHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHH
Confidence 5667777777777666666666677777777777788888777754 344999999999999964
No 36
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=87.47 E-value=1.4 Score=33.15 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=38.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHh
Q 033028 47 PNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 92 (129)
Q Consensus 47 ~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR 92 (129)
-.=..+.+..+.|..-.|+++|...|..+|...++ |..+||-.+.|
T Consensus 100 lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 100 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 34567888999999999999999999999976554 88999987765
No 37
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=86.91 E-value=2.2 Score=31.26 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=43.7
Q ss_pred HHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHh
Q 033028 38 HMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 92 (129)
Q Consensus 38 ~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR 92 (129)
++.--|...-.=..+.+..+.|..-.|+.+|...|..+|...++ |..+|+-.+.|
T Consensus 74 EI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 74 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp HHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 33344433355677888899999999999999999999987776 88999988765
No 38
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=86.82 E-value=1.7 Score=29.12 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=41.5
Q ss_pred HHHHHh-hhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHH
Q 033028 36 LQHMMY-GFG-DDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLY 89 (129)
Q Consensus 36 I~~mMy-~fG-D~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F 89 (129)
|..+++ .|. |...-..+++.++-+++.-|+.+-+.+|...|...|. |.++||-=
T Consensus 14 I~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 14 VERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp HHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 444443 444 3455689999999999999999999999999876654 88888753
No 39
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=86.60 E-value=1.7 Score=30.24 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=47.4
Q ss_pred cccHHHHHHHHhhhC---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHh
Q 033028 30 GVFQKDLQHMMYGFG---DDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 92 (129)
Q Consensus 30 ~~f~~EI~~mMy~fG---D~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR 92 (129)
-.|..=++.+.-.|. ..-.=..+.+..+.+..-.|+.+|...|..+|...|+ |...|+-.+.|
T Consensus 31 ~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 31 MPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp HHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 345555555554443 2455567888899999999999999999999987776 88999988765
No 40
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=83.29 E-value=3.5 Score=27.69 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=46.8
Q ss_pred ccHHHHHHHHhhhC--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHh
Q 033028 31 VFQKDLQHMMYGFG--DDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIR 92 (129)
Q Consensus 31 ~f~~EI~~mMy~fG--D~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR 92 (129)
.|..=++++..-|. ..-.=..+.+..+.|..-.|+.++...|..+|...++ |..+|+-.+.|
T Consensus 8 PF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 8 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp HHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 45554555554443 2345667889999999999999999999999976665 88999988765
No 41
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=81.36 E-value=4.7 Score=28.71 Aligned_cols=64 Identities=6% Similarity=0.037 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCchhHHHHHHhhChh
Q 033028 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDLP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~--Rgkis~eDl~F~lR~D~~ 96 (129)
..=|..+|----+...-...+.-++-.++-.+..+++..|.+.|.. +..|+.+||..++|+|..
T Consensus 26 V~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeE 91 (123)
T 2nqb_C 26 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE 91 (123)
T ss_dssp HHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHH
Confidence 4456666643323344455555566666666666777777776654 344999999999999964
No 42
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=80.87 E-value=4.8 Score=28.92 Aligned_cols=64 Identities=8% Similarity=0.041 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhCCCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCchhHHHHHHhhChh
Q 033028 33 QKDLQHMMYGFGDDP-NPLPETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDLP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~-~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~--Rgkis~eDl~F~lR~D~~ 96 (129)
.--|..+|---++.. .-...+.-++-.++-.+..+++..|.+.|.. +..|+.+||.-++|+|..
T Consensus 30 V~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeE 96 (128)
T 1f66_C 30 VGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 96 (128)
T ss_dssp HHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHH
T ss_pred hHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHH
Confidence 556777776555543 3333444455555544555666666666654 344999999999999964
No 43
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=79.93 E-value=4.5 Score=29.93 Aligned_cols=64 Identities=6% Similarity=0.041 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCchhHHHHHHhhChh
Q 033028 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDLP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~--Rgkis~eDl~F~lR~D~~ 96 (129)
..-|..+|----+...-...+.-++-.++-.+..+++..|.+.|.. +.+|+.+||..++|+|..
T Consensus 47 VgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeE 112 (149)
T 2f8n_K 47 VGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEE 112 (149)
T ss_dssp HHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHH
T ss_pred HHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHH
Confidence 4556666644333344444555555555555566667777666653 345999999999999964
No 44
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=79.43 E-value=5.7 Score=28.53 Aligned_cols=64 Identities=6% Similarity=0.037 Sum_probs=42.2
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCchhHHHHHHhhChh
Q 033028 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDLP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~--Rgkis~eDl~F~lR~D~~ 96 (129)
..=|..+|----+...-...+.-++-.++-.+..+++..|.+.|.. +..|+.+||..++|+|..
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeE 93 (129)
T 1tzy_A 28 VGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEE 93 (129)
T ss_dssp HHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHH
Confidence 4455555543323344555566666666666666777777777654 344999999999999964
No 45
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=78.31 E-value=4.9 Score=28.96 Aligned_cols=64 Identities=6% Similarity=0.030 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCchhHHHHHHhhChh
Q 033028 33 QKDLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSK--GGKLSVEDFLYLIRKDLP 96 (129)
Q Consensus 33 ~~EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~--Rgkis~eDl~F~lR~D~~ 96 (129)
..=|..+|----+...-...+.-++-.++-.+..+++..|.+.|.. +..|+.+||..++|+|..
T Consensus 28 V~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeE 93 (131)
T 1id3_C 28 VGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDE 93 (131)
T ss_dssp HHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHH
T ss_pred HHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHH
Confidence 4445555543223334444455555555555556666666666643 345999999999999964
No 46
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=75.09 E-value=2.8 Score=26.39 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 51 PETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 51 ~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
.+-+..-+.+.---|..+|..|...|-+++. |+.+||.-++++
T Consensus 28 ~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 28 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3333344455566789999999998877765 999999998875
No 47
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=73.14 E-value=4.6 Score=25.54 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhC
Q 033028 54 VALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 94 (129)
Q Consensus 54 v~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D 94 (129)
+..-+.+.---|..+|..|...|-+++. |+.+||.-++++=
T Consensus 29 a~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 29 VARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3344455556788999999999877653 9999999988763
No 48
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=72.10 E-value=12 Score=28.28 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--cCCCCchhHHHHHHhhChh
Q 033028 56 LVEDIVVEYVTDLAHKAQDIGS--KGGKLSVEDFLYLIRKDLP 96 (129)
Q Consensus 56 l~EeIv~~~I~~l~~~A~~~A~--~Rgkis~eDl~F~lR~D~~ 96 (129)
++-.++-....+++..|.+.|. .+..|+.+||..++|+|..
T Consensus 132 yLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~e 174 (192)
T 2jss_A 132 YLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDE 174 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHH
Confidence 3333333333444555555553 3556999999999999964
No 49
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=69.01 E-value=4.6 Score=25.75 Aligned_cols=37 Identities=5% Similarity=0.064 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhC
Q 033028 58 EDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 94 (129)
Q Consensus 58 EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D 94 (129)
+.+.---|..+|..|...|-+++. |+.+||.-++++=
T Consensus 30 ~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 30 DSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 334445677889999888876654 9999999998864
No 50
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus}
Probab=68.64 E-value=5.5 Score=29.24 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=32.7
Q ss_pred HHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033028 37 QHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDI 75 (129)
Q Consensus 37 ~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~ 75 (129)
..|||+..+..-|..|.|-.--|.|+.-|.+|+..|...
T Consensus 2 ~~~~~~~~~~~~P~~e~Vvr~TE~ITk~IqeLl~AaQ~~ 40 (135)
T 2jx0_A 2 SHMLDGDPDPGLPSTEDVILKTEQVTKNIQELLRAAQEF 40 (135)
T ss_dssp ---CCSSCBSSCSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368999999999999999999999999999999888654
No 51
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=68.35 E-value=4.7 Score=26.34 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 50 LPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 50 ~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
+.+-+..-+.+.---|..+|.+|...|-+++. |+.+||.-++.+
T Consensus 35 l~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 35 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp CHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44555555666667789999999988876653 999999988865
No 52
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=59.47 E-value=9.1 Score=24.84 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=22.6
Q ss_pred cccccccccHHHHHHHHhhhCC-----CCCCcHHHHH
Q 033028 24 SFKRKRGVFQKDLQHMMYGFGD-----DPNPLPETVA 55 (129)
Q Consensus 24 ~~~~kk~~f~~EI~~mMy~fGD-----~~~P~~ETv~ 55 (129)
..+|++..|+.+-...|..|-. .++|..+...
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~ 52 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVE 52 (80)
T ss_dssp CSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHH
Confidence 3455667898776555558888 8899877664
No 53
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=50.04 E-value=32 Score=23.84 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=26.7
Q ss_pred cCCCCchhHHHHHHhhChhhHhHHHHHHH
Q 033028 78 KGGKLSVEDFLYLIRKDLPKLNRCTELLS 106 (129)
Q Consensus 78 ~Rgkis~eDl~F~lR~D~~Kl~Rl~~lL~ 106 (129)
++|.++..|..-+++=|+.|.+||.++|.
T Consensus 72 k~g~lkk~dA~~l~kID~~K~~rIydff~ 100 (108)
T 2cuj_A 72 KQGGLRLAQARALIKIDVNKTRKIYDFLI 100 (108)
T ss_dssp HSSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHhcccHHHHHHHHHHHH
Confidence 46789999999999999999999999986
No 54
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.30 E-value=12 Score=32.22 Aligned_cols=53 Identities=13% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhC---hhhHhHHHHHHHHH
Q 033028 56 LVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD---LPKLNRCTELLSMQ 108 (129)
Q Consensus 56 l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D---~~Kl~Rl~~lL~~k 108 (129)
.-+.+.--.|..+|.+|...|.++++ |+.+||.-++.+= .+|..-...|+.|+
T Consensus 410 ~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 410 LCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 33444455788999999888865553 8999999988642 34444455566553
No 55
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=40.78 E-value=69 Score=20.40 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=27.9
Q ss_pred hhhCCCCCCcHHHHHHHHHHHHHH---------HHHHHHHHHHhhhcCCCCc
Q 033028 41 YGFGDDPNPLPETVALVEDIVVEY---------VTDLAHKAQDIGSKGGKLS 83 (129)
Q Consensus 41 y~fGD~~~P~~ETv~l~EeIv~~~---------I~~l~~~A~~~A~~Rgkis 83 (129)
+||| .+.+-..+.|.+.+.+| =.+++..|++.|...|+.+
T Consensus 11 ~g~g---~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~~ 59 (83)
T 2i5u_A 11 NGFG---LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANARN 59 (83)
T ss_dssp TTSC---SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred hCCC---CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCCC
Confidence 3787 35555566777777766 6788889988886556654
No 56
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=39.02 E-value=84 Score=20.92 Aligned_cols=58 Identities=14% Similarity=0.212 Sum_probs=45.4
Q ss_pred HHHHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCchhHHHHHHhh
Q 033028 35 DLQHMMYGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKG---GKLSVEDFLYLIRK 93 (129)
Q Consensus 35 EI~~mMy~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~R---gkis~eDl~F~lR~ 93 (129)
-|+.+|=..-+ ..+.+..+.+|--+-..|+-+|+..|..+...+ |.|..+.|.=+.|+
T Consensus 21 ~vKrl~~~~~~-~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rr 81 (89)
T 1bh9_B 21 AIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRR 81 (89)
T ss_dssp HHHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 35555555555 467789999999999999999999999998754 45888888777664
No 57
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=37.73 E-value=71 Score=19.98 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=20.6
Q ss_pred cccccccccHHH-HHHHHhhhCCCCCCcHHHHH
Q 033028 24 SFKRKRGVFQKD-LQHMMYGFGDDPNPLPETVA 55 (129)
Q Consensus 24 ~~~~kk~~f~~E-I~~mMy~fGD~~~P~~ETv~ 55 (129)
..++++..|+.+ +..|--.|--.++|..+...
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~ 53 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQ 53 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344556778554 55565667777888777654
No 58
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=35.47 E-value=45 Score=22.69 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------CCCCchhHHH
Q 033028 44 GDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSK---------GGKLSVEDFL 88 (129)
Q Consensus 44 GD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~---------Rgkis~eDl~ 88 (129)
++...-..+++.++.+++--|+.+-+.+|.+-... .|-+.++||-
T Consensus 17 ~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLE 70 (88)
T 3v9r_B 17 GNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLE 70 (88)
T ss_dssp SSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHH
T ss_pred CCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHH
Confidence 66677889999999999999999999999765432 1237777763
No 59
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.55 E-value=36 Score=22.12 Aligned_cols=16 Identities=31% Similarity=0.841 Sum_probs=10.7
Q ss_pred cccHHHHHHHH-hhhCC
Q 033028 30 GVFQKDLQHMM-YGFGD 45 (129)
Q Consensus 30 ~~f~~EI~~mM-y~fGD 45 (129)
..|...|++|+ +||-|
T Consensus 27 ~~ye~qi~qL~eMGF~d 43 (74)
T 1vej_A 27 GRYQQELEELKALGFAN 43 (74)
T ss_dssp TTSHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 35677777776 57755
No 60
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=33.54 E-value=89 Score=21.04 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=15.9
Q ss_pred cCCCCchhHHHHHHhhChh
Q 033028 78 KGGKLSVEDFLYLIRKDLP 96 (129)
Q Consensus 78 ~Rgkis~eDl~F~lR~D~~ 96 (129)
..|+|+.++|+-+++++|.
T Consensus 156 ~dG~I~~~EF~~~~~~~~~ 174 (183)
T 1dgu_A 156 RDGTINLSEFQHVISRSPD 174 (183)
T ss_dssp SSSEEEHHHHHHHHCSSCH
T ss_pred CCCeEcHHHHHHHHHhChH
Confidence 3578999999999998764
No 61
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=33.02 E-value=36 Score=22.63 Aligned_cols=30 Identities=27% Similarity=0.321 Sum_probs=26.6
Q ss_pred cCCCCchhHHHHHHhhChhhHhHHHHHHHH
Q 033028 78 KGGKLSVEDFLYLIRKDLPKLNRCTELLSM 107 (129)
Q Consensus 78 ~Rgkis~eDl~F~lR~D~~Kl~Rl~~lL~~ 107 (129)
++|.++..|..-+++=|+.|.+||.++|.-
T Consensus 54 ~~g~l~k~da~~~~kiD~~K~~~iydf~~~ 83 (90)
T 2aqe_A 54 KQGGLRLAQARALIKIDVNKTRKIYDFLIR 83 (90)
T ss_dssp HHSCCCHHHHHTTSSSSSHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHcccHHHHHHHHHHHHH
Confidence 357799999999999999999999999863
No 62
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=32.89 E-value=12 Score=25.90 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=16.5
Q ss_pred CchhHHHHHHhhChhhHhHHHHHHHHHHHHHHHHhhcccc
Q 033028 82 LSVEDFLYLIRKDLPKLNRCTELLSMQEELKQARKAFEVD 121 (129)
Q Consensus 82 is~eDl~F~lR~D~~Kl~Rl~~lL~~k~~ik~Ark~fd~d 121 (129)
+++.||-.++++-.. -..||.=+--|..|+|+|+++
T Consensus 36 lsiqDIElLmKnTEI----Wd~Ll~gkISIeEAKK~Fedn 71 (104)
T 4ayb_Q 36 LSIQDIELLMKNTEI----WDNLLNGKISVDEAKRLFEDN 71 (104)
T ss_dssp CCHHHHHHHHHHHHH----HHHHHHCCSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHhchHH----HHHHHcCcccHHHHHHHHHHH
Confidence 556666655554321 122333333345555555443
No 63
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.82 E-value=36 Score=28.53 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 56 LVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 56 l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
..+.+.--.|..+|.+|...|-++++ |+.+||.-++++
T Consensus 349 ~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 349 KMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 33344455788999999888866664 999999998864
No 64
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=32.65 E-value=34 Score=20.70 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.4
Q ss_pred hhHHHHHHhhChhhHhHHHH
Q 033028 84 VEDFLYLIRKDLPKLNRCTE 103 (129)
Q Consensus 84 ~eDl~F~lR~D~~Kl~Rl~~ 103 (129)
.+-|+|+|++|+.-+..|.+
T Consensus 15 ~qal~hLiknD~~Fl~~iHe 34 (46)
T 2wx4_A 15 VQAFTYLIQNDKEFANKLHK 34 (46)
T ss_dssp HHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH
Confidence 46789999999999998876
No 65
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=32.62 E-value=78 Score=20.10 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=19.4
Q ss_pred ccccccccccHHHH-HHHHhhhCC----CCCCcHHHHH
Q 033028 23 TSFKRKRGVFQKDL-QHMMYGFGD----DPNPLPETVA 55 (129)
Q Consensus 23 ~~~~~kk~~f~~EI-~~mMy~fGD----~~~P~~ETv~ 55 (129)
...+|++..|+.+- ..|.-.|-- .++|..+...
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~ 52 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQ 52 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHH
Confidence 34456677887763 444334443 6778776654
No 66
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=30.53 E-value=1.2e+02 Score=21.48 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCCC-chhHHHHHHhh
Q 033028 50 LPETVALVEDIVVEYVTDLAHKAQDIGS----KGGKL-SVEDFLYLIRK 93 (129)
Q Consensus 50 ~~ETv~l~EeIv~~~I~~l~~~A~~~A~----~Rgki-s~eDl~F~lR~ 93 (129)
.-|+..-+.+-....|...+.++++-=. .-|+| +.|||.||.|+
T Consensus 11 ~s~~~~~~k~~Fr~eis~~Vv~~L~pYRk~~Ck~GRITs~EDFK~LaRK 59 (112)
T 2a7o_A 11 SSELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARK 59 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTCSSSBCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccCccccCccccHHHHHHHHHH
Confidence 3455555666666666666666665321 13665 59999999985
No 67
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=29.63 E-value=1.1e+02 Score=20.12 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=25.2
Q ss_pred CCC-CchhHHHHHHhhChhhHhHHHHHHH
Q 033028 79 GGK-LSVEDFLYLIRKDLPKLNRCTELLS 106 (129)
Q Consensus 79 Rgk-is~eDl~F~lR~D~~Kl~Rl~~lL~ 106 (129)
+|. ++.+|..-+++=|+.|.+||.++|.
T Consensus 55 ~g~~lkk~da~~~~kiD~~K~~~iydf~~ 83 (88)
T 2elj_A 55 TGGNLSKSACRELLNIDPIKANRIYDFFQ 83 (88)
T ss_dssp HSSCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHcccHHHHHHHHHHHH
Confidence 354 9999999999999999999999985
No 68
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.65 E-value=48 Score=27.86 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 58 EDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 58 EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
+.+.--.|..+|.+|...|.++++ |+.+||.-++++
T Consensus 384 ~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 384 DGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 334445788999999888866554 999999999874
No 69
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=28.65 E-value=46 Score=20.49 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=17.2
Q ss_pred hhHHHHHHhhChhhHhHHHH
Q 033028 84 VEDFLYLIRKDLPKLNRCTE 103 (129)
Q Consensus 84 ~eDl~F~lR~D~~Kl~Rl~~ 103 (129)
.+-|+++|++|+.-+..|.+
T Consensus 17 ~qaLihLIqnD~~Fl~~IHe 36 (51)
T 2wx3_A 17 QDTLIHLIKNDSSFLSTLHE 36 (51)
T ss_dssp HHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH
Confidence 35689999999999999876
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.00 E-value=50 Score=28.10 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 56 LVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 56 l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
.-+.+.--.|..+|.+|.-.|.++++ |+.+||.-++++
T Consensus 383 ~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 383 TKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 33445556788999999888866654 899999888753
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.70 E-value=46 Score=27.96 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhC
Q 033028 54 VALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD 94 (129)
Q Consensus 54 v~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D 94 (129)
+..-+.+.--.|..+|.+|...|.++|+ |+.+||.-++.+=
T Consensus 380 A~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 380 ARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 3334445556789999999888866554 9999999998753
No 72
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=25.50 E-value=61 Score=26.86 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=19.6
Q ss_pred cHHHHHHHHhhhCCCCCCcHHHHH-HHHHHHHHHHHHHH
Q 033028 32 FQKDLQHMMYGFGDDPNPLPETVA-LVEDIVVEYVTDLA 69 (129)
Q Consensus 32 f~~EI~~mMy~fGD~~~P~~ETv~-l~EeIv~~~I~~l~ 69 (129)
...+++.++||-|| .+|.+|.+. |..+|..+-+..++
T Consensus 46 ~l~~mK~iL~G~~e-~ep~~e~~~qL~~ei~~~dll~~L 83 (341)
T 1upk_A 46 NLVAMKEILYGTNE-KEPQTEAVAQLAQELYNSGLLSTL 83 (341)
T ss_dssp HHHHHHHHHC--------CHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHHHHHhcCCCC-CCCCHHHHHHHHHHHHHhCHHHHH
Confidence 45567788999988 458888654 77887665444333
No 73
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=25.46 E-value=2.3e+02 Score=21.79 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=15.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Q 033028 48 NPLPETVALVEDIVVEYVTDLAHKAQ 73 (129)
Q Consensus 48 ~P~~ETv~l~EeIv~~~I~~l~~~A~ 73 (129)
+-.++|...|++=|..-|.+...+|.
T Consensus 142 ~~Se~ta~~iD~Ev~~il~~ay~~a~ 167 (238)
T 2di4_A 142 DTSPDLLREIDEEVKRIITEQYEKAK 167 (238)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777766655555444443
No 74
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=25.21 E-value=1e+02 Score=23.95 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhhhCCCCCCcH-HH--------HHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHhhChhhHhHH
Q 033028 31 VFQKDLQHMMYGFGDDPNPLP-ET--------VALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNRC 101 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~-ET--------v~l~EeIv~~~I~~l~~~A~~~A~~Rgkis~eDl~F~lR~D~~Kl~Rl 101 (129)
.|+...++|+...|=. |+. .. -++.-++ -.+|+++|..... ...|-|+++|+.-.+.+.
T Consensus 59 ~fR~~F~~mc~siGVD--PLa~s~kg~~~lg~gdfy~eL-avqIvEvC~~tr~--~nGGli~l~el~~~~~r~------- 126 (233)
T 1u5t_A 59 EFRSKFMHMCSSIGID--PLSLFDRDKHLFTVNDFYYEV-CLKVIEICRQTKD--MNGGVISFQELEKVHFRK------- 126 (233)
T ss_dssp HHHHHHHHHHHHHTCC--HHHHTTSSGGGTTHHHHHHHH-HHHHHHHHHHHTT--TSSSCEEHHHHHHTTTTT-------
T ss_pred HHHHHHHHHHHHcCCC--CCccCCccccccCcchHHHHH-HHHHHHHHHHHHH--hcCCeeEHHHHHHHHHhh-------
Confidence 5899999999999964 666 11 1222222 2245555544432 234569999999998776
Q ss_pred HHHHHHHHHHHHHHh
Q 033028 102 TELLSMQEELKQARK 116 (129)
Q Consensus 102 ~~lL~~k~~ik~Ark 116 (129)
+.++..|.++..++
T Consensus 127 -~~IS~dDi~rAik~ 140 (233)
T 1u5t_A 127 -LNVGLDDLEKSIDM 140 (233)
T ss_dssp -TTCCHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHH
Confidence 56666666665554
No 75
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=25.15 E-value=2.4e+02 Score=21.90 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHhh------hcCCCCchhHHHHHHhhChhhHhHHHHHHHHHH
Q 033028 49 PLPETVALVEDIVVEYVTD-LAHKAQDIG------SKGGKLSVEDFLYLIRKDLPKLNRCTELLSMQE 109 (129)
Q Consensus 49 P~~ETv~l~EeIv~~~I~~-l~~~A~~~A------~~Rgkis~eDl~F~lR~D~~Kl~Rl~~lL~~k~ 109 (129)
|..++..++.+++.-|+.- .+..|.++. ...|.+++++|.=.+.=|+..+.|+-.+|..-.
T Consensus 4 ~e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~g 71 (353)
T 4a6d_A 4 SEDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLK 71 (353)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCC
Confidence 5567888899999888654 445555442 224569999999999999999999888776433
No 76
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=24.35 E-value=74 Score=23.18 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCC--CCchhHHHHHHhh
Q 033028 60 IVVEYVTDLAHKAQDIGSKGG--KLSVEDFLYLIRK 93 (129)
Q Consensus 60 Iv~~~I~~l~~~A~~~A~~Rg--kis~eDl~F~lR~ 93 (129)
+....|..+|..|...|..++ .|+.+||.-+++.
T Consensus 216 ~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 216 FSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 345578888999988887665 4999999877653
No 77
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=24.25 E-value=71 Score=21.80 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhChh
Q 033028 63 EYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLP 96 (129)
Q Consensus 63 ~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D~~ 96 (129)
..+..++..|...|...|. |++|+|+..|=.++.
T Consensus 84 ~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~ 119 (145)
T 3fes_A 84 PRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGE 119 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCC
Confidence 3455666778777876664 999999999876654
No 78
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=23.58 E-value=33 Score=29.58 Aligned_cols=33 Identities=24% Similarity=0.555 Sum_probs=24.4
Q ss_pred cccccHHHHHHHHhhhCCCC---CCcHHHHHHHHHH
Q 033028 28 KRGVFQKDLQHMMYGFGDDP---NPLPETVALVEDI 60 (129)
Q Consensus 28 kk~~f~~EI~~mMy~fGD~~---~P~~ETv~l~EeI 60 (129)
-++....-+..++||.||.. ||-.+++.-+..+
T Consensus 171 ~~gI~as~ldGL~yG~GDAVIGiNPa~Ds~~~~~~l 206 (455)
T 2qez_A 171 PDGILASLMEGLTYGIGDAVIGLNPVDDSTDSVVRL 206 (455)
T ss_dssp HHHHHHHHHHHHHTTCCSSEEEECCSCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCeEEecCCCCCCHHHHHHH
Confidence 46778888899999999984 7877755544433
No 79
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=23.23 E-value=1.1e+02 Score=21.80 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=16.1
Q ss_pred cCCCCchhHHHHHHhhChh
Q 033028 78 KGGKLSVEDFLYLIRKDLP 96 (129)
Q Consensus 78 ~Rgkis~eDl~F~lR~D~~ 96 (129)
..|+|+.++|+-+++++|.
T Consensus 187 ~dG~Is~~EF~~~~~~~p~ 205 (214)
T 2l4h_A 187 RDGTINLSEFQHVISRSPD 205 (214)
T ss_dssp CCSSBCSHHHHHHHHTCHH
T ss_pred CCCcCCHHHHHHHHHhChH
Confidence 3578999999999998874
No 80
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=23.20 E-value=97 Score=24.19 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=49.6
Q ss_pred ccHHHHHHHHhhhCCCCCCcHHH----------HHHHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHhhChhhHhH
Q 033028 31 VFQKDLQHMMYGFGDDPNPLPET----------VALVEDIVVEYVTDLAHKAQDIGSKGGKLSVEDFLYLIRKDLPKLNR 100 (129)
Q Consensus 31 ~f~~EI~~mMy~fGD~~~P~~ET----------v~l~EeIv~~~I~~l~~~A~~~A~~Rgkis~eDl~F~lR~D~~Kl~R 100 (129)
.|+...++|+...|=. |+.-. -++.-+ |-.+|+++|..... ..-|-|+++|+.-.+.+.+.+..
T Consensus 39 ~fR~~F~~mc~siGVD--Plas~kg~ws~~lG~gdfy~e-LavqIvEvC~~tr~--~nGGli~L~el~~~~~r~Rg~~~- 112 (234)
T 3cuq_A 39 EFRVQFQDMCATIGVD--PLASGKGFWSEMLGVGDFYYE-LGVQIIEVCLALKH--RNGGLITLEELHQQVLKGRGKFA- 112 (234)
T ss_dssp HHHHHHHHHHHHHTCC--TTSCTTSHHHHHHCHHHHHHH-HHHHHHHHHHHHHH--HHSSEEEHHHHHHHHHHTTTTCC-
T ss_pred HHHHHHHHHHHHcCCC--cccCCcchhhhhcCcchHHHH-HHHHHHHHHHHHHH--hcCCeeEHHHHHHHHHHhcCCcc-
Confidence 5888999999999965 55522 122222 22356666655442 23456999999999987665522
Q ss_pred HHHHHHHHHHHHHHHh
Q 033028 101 CTELLSMQEELKQARK 116 (129)
Q Consensus 101 l~~lL~~k~~ik~Ark 116 (129)
+.++-.|.++..++
T Consensus 113 --~~IS~dDi~rAik~ 126 (234)
T 3cuq_A 113 --QDVSQDDLIRAIKK 126 (234)
T ss_dssp --SSCCHHHHHHHHHH
T ss_pred --CccCHHHHHHHHHH
Confidence 46676676665554
No 81
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=23.17 E-value=74 Score=23.37 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhh
Q 033028 56 LVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRK 93 (129)
Q Consensus 56 l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~ 93 (129)
..+.+....|..+|..|...|..++. |+.+||.-+++.
T Consensus 218 ~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 218 MTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 33344555788899999888876653 999999888764
No 82
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=22.92 E-value=46 Score=17.53 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=11.1
Q ss_pred CCCCCCcCCCCCCCC
Q 033028 7 GQSSKSKAGSSQPYE 21 (129)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (129)
+|-++..+|+-|||.
T Consensus 1 gplgspntgakqpps 15 (26)
T 2jmf_B 1 GPLGSPNTGAKQPPS 15 (26)
T ss_pred CCCCCCCCCCCCCCC
Confidence 356777888888884
No 83
>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides}
Probab=22.60 E-value=93 Score=25.52 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=30.9
Q ss_pred hhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 033028 41 YGFGDDPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK 81 (129)
Q Consensus 41 y~fGD~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk 81 (129)
|...| +..+...+|..|+++.|.+|...|.-+...-|+
T Consensus 34 ySi~~---~n~~~~~~i~~V~~eEMlHl~l~aNll~AiGg~ 71 (317)
T 3hl1_A 34 YSIKD---PTTVPYRLIQAAVYQEMLHAQLVSNIANAYGYS 71 (317)
T ss_dssp HHBSC---TTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55555 567899999999999999999988877666665
No 84
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
Probab=22.48 E-value=33 Score=29.59 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=24.3
Q ss_pred cccccHHHHHHHHhhhCCCC---CCcHHHHHHHHHH
Q 033028 28 KRGVFQKDLQHMMYGFGDDP---NPLPETVALVEDI 60 (129)
Q Consensus 28 kk~~f~~EI~~mMy~fGD~~---~P~~ETv~l~EeI 60 (129)
-++....-+..++||.||.. ||-.+++.-+..+
T Consensus 170 ~~gI~as~ldGL~yG~GDAVIGiNPa~Ds~~~~~~l 205 (453)
T 3abq_A 170 VQSIAAQIYEGLSFGVGDAVIGVNPVTDDVENLSRV 205 (453)
T ss_dssp HHHHHHHHHHHHTTTCCSSEEEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCeEEecCCCCCCHHHHHHH
Confidence 45778888899999999984 7877755544433
No 85
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=22.15 E-value=1.4e+02 Score=19.25 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=21.6
Q ss_pred ccccccccccHHH-HHHHHhhhCCCCCCcHHHHH
Q 033028 23 TSFKRKRGVFQKD-LQHMMYGFGDDPNPLPETVA 55 (129)
Q Consensus 23 ~~~~~kk~~f~~E-I~~mMy~fGD~~~P~~ETv~ 55 (129)
...++++..|+.+ +..|--.|-..++|..+...
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~ 48 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERA 48 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHH
Confidence 3445666788654 56666677777888776654
No 86
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=21.68 E-value=45 Score=18.32 Aligned_cols=16 Identities=13% Similarity=0.540 Sum_probs=12.6
Q ss_pred CCCchhHHH-HHHhhCh
Q 033028 80 GKLSVEDFL-YLIRKDL 95 (129)
Q Consensus 80 gkis~eDl~-F~lR~D~ 95 (129)
|.|-..||+ |+|++-|
T Consensus 4 gnilpsdimdfvlkntp 20 (31)
T 2agh_C 4 GNILPSDIMDFVLKNTP 20 (31)
T ss_dssp CCSSCHHHHHHHHHHSC
T ss_pred cccChHHHHHHHHhCCh
Confidence 557778888 9988876
No 87
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.54 E-value=1.5e+02 Score=18.30 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=21.1
Q ss_pred ccccccccHHH-HHHHHhhhCCCCCCcHHHHHH
Q 033028 25 FKRKRGVFQKD-LQHMMYGFGDDPNPLPETVAL 56 (129)
Q Consensus 25 ~~~kk~~f~~E-I~~mMy~fGD~~~P~~ETv~l 56 (129)
.++++..|+.+ +..|--.|-..++|..+....
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~ 49 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEKQKYLSTPDRID 49 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 34455678554 566667777788888877553
No 88
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=21.14 E-value=1e+02 Score=20.55 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhChh
Q 033028 63 EYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDLP 96 (129)
Q Consensus 63 ~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D~~ 96 (129)
+...+.+..|...|..+|- |.+|.|+..|=+++.
T Consensus 4 ~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~ 39 (143)
T 1k6k_A 4 QELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS 39 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch
Confidence 4566778888888877664 999999999987764
No 89
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=20.95 E-value=1e+02 Score=19.57 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=15.9
Q ss_pred cCCCCchhHHHHHHhhChh
Q 033028 78 KGGKLSVEDFLYLIRKDLP 96 (129)
Q Consensus 78 ~Rgkis~eDl~F~lR~D~~ 96 (129)
..|+|+.++|+-+|+++|+
T Consensus 125 ~dg~i~~~eF~~~~~~~~k 143 (143)
T 3j04_B 125 KKGNFNYVEFTRILKHGAK 143 (143)
T ss_dssp SSSCCCSTHHHHHHHSSCC
T ss_pred CCCcCcHHHHHHHHhccCC
Confidence 4578999999999998763
No 90
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=20.91 E-value=1.8e+02 Score=18.98 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=12.3
Q ss_pred cCCCCchhHHHHHHhh
Q 033028 78 KGGKLSVEDFLYLIRK 93 (129)
Q Consensus 78 ~Rgkis~eDl~F~lR~ 93 (129)
..|.|+.++|+-++++
T Consensus 117 ~dg~i~~~eF~~~~~~ 132 (165)
T 1k94_A 117 KNGRIFFDDYVACCVK 132 (165)
T ss_dssp BTTBCBHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHH
Confidence 4678999998877754
No 91
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=20.72 E-value=1.1e+02 Score=20.82 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhcCCC--CchhHHHHHHhhCh
Q 033028 65 VTDLAHKAQDIGSKGGK--LSVEDFLYLIRKDL 95 (129)
Q Consensus 65 I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D~ 95 (129)
+..++..|...|...|. |++|.|+..|=.++
T Consensus 86 ~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 86 AKKVLELSLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 34555667777766554 99999999987654
No 92
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=20.13 E-value=3.2e+02 Score=21.44 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=63.1
Q ss_pred cccccHHHHHHHHhhhCC---CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CchhHHHHHHhhC--------
Q 033028 28 KRGVFQKDLQHMMYGFGD---DPNPLPETVALVEDIVVEYVTDLAHKAQDIGSKGGK--LSVEDFLYLIRKD-------- 94 (129)
Q Consensus 28 kk~~f~~EI~~mMy~fGD---~~~P~~ETv~l~EeIv~~~I~~l~~~A~~~A~~Rgk--is~eDl~F~lR~D-------- 94 (129)
+|-.|..=++.+.-.|.. .-.=..+.+..+.|..-.|+..|...+.-+|...++ |-+.|+-.+.|=-
T Consensus 13 ~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~~~p~e 92 (235)
T 2l5a_A 13 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFLVPRG 92 (235)
T ss_dssp SCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSCCCCSS
T ss_pred cCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhccCCchh
Confidence 355677766666655542 455677888899999999999999999999877666 7788998886632
Q ss_pred ---hhhHhHHHHHHHHHHHHHHHHhhcccch
Q 033028 95 ---LPKLNRCTELLSMQEELKQARKAFEVDE 122 (129)
Q Consensus 95 ---~~Kl~Rl~~lL~~k~~ik~Ark~fd~de 122 (129)
..|.+-.+=-=.|...+.+=-+ |++-.
T Consensus 93 vme~~~~~~~~~k~~~~~i~~ky~~-~~~~g 122 (235)
T 2l5a_A 93 SMERHKLADENMRKVWSNIISKYES-IEEQG 122 (235)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTT-CCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccCCC
Confidence 1233333333345566666555 65533
Done!