BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033029
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FNP8|RS193_ARATH 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2
SV=1
Length = 143
Score = 229 bits (585), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/142 (77%), Positives = 120/142 (84%), Gaps = 14/142 (9%)
Query: 1 MATARTVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAAS 46
MAT +TVKDVSPHEFVKAY+AHLKRSGK KELAPYDPDWYY+RAAS
Sbjct: 1 MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60
Query: 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG 106
MARK+YLR GLGVG+FRRIYGGSKRNGSRPPHFCKSSG +ARHILQQLQ MNI+D++ KG
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120
Query: 107 GRRITSSGQRDLDQVAGRIVVA 128
GR+ITSSGQRDLDQVAGRI A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142
>sp|Q9SGA6|RS191_ARATH 40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2
SV=1
Length = 143
Score = 228 bits (581), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 109/143 (76%), Positives = 121/143 (84%), Gaps = 14/143 (9%)
Query: 1 MATARTVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAAS 46
MAT +TVKDVSPH+FVKAY++HLKRSGK KELAPYDPDWYY+RAAS
Sbjct: 1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60
Query: 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG 106
MARK+YLR GLGVG+FRRIYGGSKRNGSRPPHFCKSSG IARHILQQL+ MNI++++ KG
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120
Query: 107 GRRITSSGQRDLDQVAGRIVVAP 129
GRRITSSGQRDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143
>sp|Q9LF30|RS192_ARATH 40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2
SV=1
Length = 143
Score = 223 bits (567), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/139 (76%), Positives = 119/139 (85%), Gaps = 14/139 (10%)
Query: 1 MATARTVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAAS 46
MAT +TVKDVSPH+FVKAY++HLKRSGK KELAPYDPDWYY+RAAS
Sbjct: 1 MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60
Query: 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG 106
MARKIYLR GLGVG+FRRIYGGSKRNGSRPPHFCKSSG IARHILQQL+ M+I++++ KG
Sbjct: 61 MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120
Query: 107 GRRITSSGQRDLDQVAGRI 125
GRRITSSGQRDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139
>sp|P40978|RS19_ORYSJ 40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A
PE=3 SV=1
Length = 146
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/141 (73%), Positives = 117/141 (82%), Gaps = 14/141 (9%)
Query: 2 ATARTVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAASM 47
+TARTVKDV+PHEFVKAYSAHLKRSGK FKEL PYDPDWYY RAAS+
Sbjct: 4 STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63
Query: 48 ARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG 107
ARKIYLRQG+GVG F++IYGG +RNGSRPPHFCKSSGAI+R+ILQQLQ M IID++PKGG
Sbjct: 64 ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123
Query: 108 RRITSSGQRDLDQVAGRIVVA 128
R ITS G+RDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDVT 144
>sp|Q94613|RS19_MYAAR 40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1
Length = 149
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 99/134 (73%), Gaps = 14/134 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAASMARKI 51
+VKDVS HEF +A++A LK+SGK FKEL+PY+PDWY++RAAS+ R +
Sbjct: 4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
Y+R G+GSF +IYGG +R G+ P HFCK++G+I+R +LQ L+ + I++ +P GGRR+T
Sbjct: 64 YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123
Query: 112 SSGQRDLDQVAGRI 125
S G+RDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137
>sp|Q9Y0H3|RS19_MYXGL 40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1
Length = 145
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 97/136 (71%), Gaps = 14/136 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFVKA +A K+SGK K ELAP+D DWYY+R AS+AR +
Sbjct: 5 TVKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
Y+R G+GVG+ +IYGG +RNG+RP H+ + S +AR +LQ L+ + +++ +P GGRR+T
Sbjct: 65 YMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLT 124
Query: 112 SSGQRDLDQVAGRIVV 127
S GQRD+D++AG++VV
Sbjct: 125 SIGQRDMDRIAGQVVV 140
>sp|P17074|RS19_RAT 40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3
Length = 145
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 93/137 (67%), Gaps = 14/137 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFV+A +A LK+SGK K ELAPYD +W+Y RAAS AR +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR G GVGS +IYGG +RNG RP HF + S ++AR +LQ L+ + +++ + GGR++T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLT 124
Query: 112 SSGQRDLDQVAGRIVVA 128
GQRDLD++AG++ A
Sbjct: 125 PQGQRDLDRIAGQVAAA 141
>sp|Q9CZX8|RS19_MOUSE 40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3
Length = 145
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 93/137 (67%), Gaps = 14/137 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFV+A +A LK+SGK K ELAPYD +W+Y RAAS AR +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR G GVGS +IYGG +RNG RP HF + S ++AR +LQ L+ + +++ + GGR++T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLT 124
Query: 112 SSGQRDLDQVAGRIVVA 128
GQRDLD++AG++ A
Sbjct: 125 PQGQRDLDRIAGQVAAA 141
>sp|Q8T5Z4|RS19_BRABE 40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2
SV=1
Length = 147
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 95/137 (69%), Gaps = 14/137 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFVKA++A LK+SGK K ELAPYDPDW+Y+RAAS AR +
Sbjct: 6 TVKDVNQQEFVKAFAAFLKKSGKLKLPEWVDLVKTAPHKELAPYDPDWFYLRAASTARHL 65
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
Y+R G+GVG+ +IYGG KR G++P F S ++R +LQ L+ + +++ + GGRR+T
Sbjct: 66 YMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKDAAGGRRLT 125
Query: 112 SSGQRDLDQVAGRIVVA 128
S GQRDLD++AG++ A
Sbjct: 126 SQGQRDLDRIAGQVATA 142
>sp|Q5R8M9|RS19_PONAB 40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3
Length = 145
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 92/137 (67%), Gaps = 14/137 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFV+A +A LK+SGK K ELAPYD +W+Y RAAS AR +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR G GVGS +IYGG +RNG P HF + S ++AR +LQ L+ + +++ + GGR++T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLT 124
Query: 112 SSGQRDLDQVAGRIVVA 128
GQRDLD++AG++ A
Sbjct: 125 PQGQRDLDRIAGQVAAA 141
>sp|P39019|RS19_HUMAN 40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2
Length = 145
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 92/137 (67%), Gaps = 14/137 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFV+A +A LK+SGK K ELAPYD +W+Y RAAS AR +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR G GVGS +IYGG +RNG P HF + S ++AR +LQ L+ + +++ + GGR++T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLT 124
Query: 112 SSGQRDLDQVAGRIVVA 128
GQRDLD++AG++ A
Sbjct: 125 PQGQRDLDRIAGQVAAA 141
>sp|Q32PD5|RS19_BOVIN 40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3
Length = 145
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 92/137 (67%), Gaps = 14/137 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFV+A +A LK+SGK K ELAPYD +W+Y RAAS AR +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR G GVGS +IYGG +RNG P HF + S ++AR +LQ L+ + +++ + GGR++T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLT 124
Query: 112 SSGQRDLDQVAGRIVVA 128
GQRDLD++AG++ A
Sbjct: 125 PQGQRDLDRIAGQVAAA 141
>sp|Q8ITC3|RS19_ARGIR 40S ribosomal protein S19 OS=Argopecten irradians GN=RPS19 PE=2
SV=1
Length = 144
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 90/134 (67%), Gaps = 14/134 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAASMARKI 51
+VKDV H F KA +A LK+SGK F EL+PYD DW+Y RAAS+ R +
Sbjct: 4 SVKDVDSHTFTKALAAFLKKSGKMKIPEWATIIKLSKFNELSPYDEDWFYTRAASICRHL 63
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
Y+R GVG+ +IYG KRNG+ P H+C+SSG++AR +LQ L+ +++ + GGR++T
Sbjct: 64 YIRSPAGVGALTKIYGDRKRNGTVPSHYCRSSGSVARRVLQALETQKLVEKDANGGRKLT 123
Query: 112 SSGQRDLDQVAGRI 125
S GQ+DLD++A ++
Sbjct: 124 SQGQKDLDRIAAQV 137
>sp|Q29308|RS19_PIG 40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2
SV=3
Length = 136
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 89/132 (67%), Gaps = 14/132 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFV+A +A LK+SGK K ELAPYD +W+Y RAAS AR +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAXHKELAPYDENWFYTRAASTARHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR G GVGS +IYGG +RNG P HF + S ++AR +LQ L+ + +++ + GGR++T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLT 124
Query: 112 SSGQRDLDQVAG 123
GQRDLD++AG
Sbjct: 125 PQGQRDLDRIAG 136
>sp|Q90YQ4|RS19_ICTPU 40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1
Length = 147
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 90/137 (65%), Gaps = 14/137 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFV+A +A LK+SGK K ELAP D +W+Y+RAAS R +
Sbjct: 7 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDIVKLAKHKELAPCDDNWFYIRAASTVRHL 66
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR G+GVGS +IYGG KRNG P HF S +AR +LQ L+ + +++ +P GGRR+T
Sbjct: 67 YLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQALEALKMVEKDPNGGRRLT 126
Query: 112 SSGQRDLDQVAGRIVVA 128
G RDLD++AG++ A
Sbjct: 127 PQGTRDLDRIAGQVAAA 143
>sp|Q9DFR5|RS19_GILMI 40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2
SV=1
Length = 147
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 91/137 (66%), Gaps = 14/137 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFV+A +A LK+SGK K ELAP D +W+Y+RAAS R +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR G GVGS +IYGG +RNG P H+ + S +AR +LQ L+ + +I+ +P GGRR+T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKDPNGGRRLT 124
Query: 112 SSGQRDLDQVAGRIVVA 128
+ G RDLD++AG++ A
Sbjct: 125 AQGTRDLDRIAGQVSAA 141
>sp|P39018|RS19A_DROME 40S ribosomal protein S19a OS=Drosophila melanogaster GN=RpS19a
PE=2 SV=3
Length = 156
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 87/135 (64%), Gaps = 14/135 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAASMARKI 51
TVKD+ H KA + LK++GK FKELAPYDPDW+YVR AS+ R +
Sbjct: 5 TVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
Y R GVGS +IYGG KRNG P HFC+++ AR LQ L++ +++ P GGR+++
Sbjct: 65 YHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGGRKLS 124
Query: 112 SSGQRDLDQVAGRIV 126
S GQRDLD++A +IV
Sbjct: 125 SIGQRDLDRIANQIV 139
>sp|Q54X51|RS19_DICDI 40S ribosomal protein S19 OS=Dictyostelium discoideum GN=rps19 PE=3
SV=1
Length = 148
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 94/139 (67%), Gaps = 15/139 (10%)
Query: 2 ATARTVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAASM 47
TA T+KDV P EF+ Y+ LK++G+ ++EL P +PDW Y R A++
Sbjct: 3 TTAVTLKDVCPQEFIATYARFLKKTGRVQIPKWNDIAKTATYRELPPTNPDWIYYRIATL 62
Query: 48 ARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP-KG 106
ARK+Y+R G GV ++RR++GG++RNG RP HF +G R+ L+QLQN+ +I+ + KG
Sbjct: 63 ARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQLQNLKVIETDAVKG 122
Query: 107 GRRITSSGQRDLDQVAGRI 125
GR IT++G+RDLD++A +I
Sbjct: 123 GRTITATGRRDLDRIAKQI 141
>sp|P79016|RS19B_SCHPO 40S ribosomal protein S19-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps19b PE=3 SV=2
Length = 143
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 86/131 (65%), Gaps = 14/131 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKF--------------KELAPYDPDWYYVRAASMARKI 51
+VKDV +F+ AY+A LKRSGK KELAPYDPDWYYVRAA++AR I
Sbjct: 5 SVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHI 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR+ +GVG ++YGGS G RP H SG++ R ++Q L+ + +++ GGRRI+
Sbjct: 65 YLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRIS 124
Query: 112 SSGQRDLDQVA 122
GQRDLD++A
Sbjct: 125 QQGQRDLDRIA 135
>sp|P61155|RS19_PAGMA 40S ribosomal protein S19 OS=Pagrus major GN=rps19 PE=2 SV=1
Length = 146
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 89/137 (64%), Gaps = 14/137 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAASMARKI 51
TVKDV+ EFV+A +A LK+SGK K ELAP D +W+Y+R+AS R +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGKHKELAPSDENWFYIRSASTVRHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR G GVGS +IYG +RNG P H+ S +AR +LQ L+ + +I+ +P GGRR+T
Sbjct: 65 YLRGGAGVGSMTKIYGSRQRNGVCPAHYSVGSKNVARKVLQALELLKMIEKDPNGGRRLT 124
Query: 112 SSGQRDLDQVAGRIVVA 128
+ G RDLD++AG++ A
Sbjct: 125 AQGTRDLDRIAGQVAAA 141
>sp|P58234|RS19A_SCHPO 40S ribosomal protein S19-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps19a PE=2 SV=1
Length = 144
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 86/131 (65%), Gaps = 14/131 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKF--------------KELAPYDPDWYYVRAASMARKI 51
+VKDV +F+ AY+A LKRSGK KELAPYDPDWYYVRAA++AR I
Sbjct: 5 SVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHI 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR+ +GVG ++YGGS G RP H SG++ R ++Q L+ + +++ GGRRI+
Sbjct: 65 YLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRIS 124
Query: 112 SSGQRDLDQVA 122
GQRDLD++A
Sbjct: 125 QQGQRDLDRIA 135
>sp|P27073|RS19_EMENI 40S ribosomal protein S19 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rps19 PE=3
SV=1
Length = 148
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 88/136 (64%), Gaps = 15/136 (11%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKF--------------KELAPYDPDWYYVRAASMARKI 51
TV+DV +F+ AY+A LKR GK EL P D DWYYVRAA++AR I
Sbjct: 5 TVRDVDAQKFIVAYAAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWYYVRAAAVARHI 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIID-IEPKGGRRI 110
YLR+ +GVG R+++G +K GSRP H +SGA+ R +LQ L+ + +++ E KGGRRI
Sbjct: 65 YLRKTVGVGRLRKVHGSTKNRGSRPAHHVDASGAVDRKVLQSLEKIGVLEQDEEKGGRRI 124
Query: 111 TSSGQRDLDQVAGRIV 126
T SGQRDLD++A V
Sbjct: 125 TQSGQRDLDRIAKTTV 140
>sp|Q7KS38|RS19B_DROME 40S ribosomal protein S19b OS=Drosophila melanogaster GN=RpS19b
PE=1 SV=3
Length = 155
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 81/135 (60%), Gaps = 14/135 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAASMARKI 51
TVK++ H K +A LK+SGK FKE AP D DW+Y R AS+ R +
Sbjct: 5 TVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRHL 64
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YLR GVG+F ++Y G KRNG RP C+SS R LQ L+ N+++ P GGR++T
Sbjct: 65 YLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGGRKLT 124
Query: 112 SSGQRDLDQVAGRIV 126
GQR+LD++A +IV
Sbjct: 125 PQGQRNLDRIANKIV 139
>sp|P39698|RS19S_ASCSU 40S ribosomal protein S19S OS=Ascaris suum GN=RPS19S PE=2 SV=1
Length = 150
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 15/140 (10%)
Query: 1 MATARTVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAAS 46
M +VKDV HE V+ + LK+SGK K ELAP D DWYYVR AS
Sbjct: 1 MVKQPSVKDVDQHEIVRYIAGFLKKSGKVKVPEWSDLVKLGITKELAPVDSDWYYVRTAS 60
Query: 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG 106
+AR++Y+R GVG+ RR+YGG+KR G P HF ++SG++ R LQ L+ + ++ P G
Sbjct: 61 VARRLYIRSPTGVGALRRVYGGNKRRGVTPNHFARASGSVIRKALQTLEAIKWVEKHPDG 120
Query: 107 -GRRITSSGQRDLDQVAGRI 125
GR +T G++DLD++A ++
Sbjct: 121 NGRILTKQGRKDLDRIASQM 140
>sp|P07281|RS19B_YEAST 40S ribosomal protein S19-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS19B PE=1 SV=2
Length = 144
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 89/136 (65%), Gaps = 15/136 (11%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPD-WYYVRAASMARK 50
+V+DV+ +F+ AY++ L+R GK + E+ P D + W+Y RAAS+AR
Sbjct: 5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARH 64
Query: 51 IYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRI 110
IY+R+ +GVG ++YGG+K G RP +SG+I R +LQ L+ + I++I PKGGRRI
Sbjct: 65 IYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRI 124
Query: 111 TSSGQRDLDQVAGRIV 126
+ +GQRDLD++A + +
Sbjct: 125 SENGQRDLDRIAAQTL 140
>sp|P07280|RS19A_YEAST 40S ribosomal protein S19-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS19A PE=1 SV=2
Length = 144
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 89/136 (65%), Gaps = 15/136 (11%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPD-WYYVRAASMARK 50
+V+DV+ +F+ AY++ L+R GK + E+ P D + W+Y RAAS+AR
Sbjct: 5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARH 64
Query: 51 IYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRI 110
IY+R+ +GVG ++YGG+K G RP +SG+I R +LQ L+ + I++I PKGGRRI
Sbjct: 65 IYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRI 124
Query: 111 TSSGQRDLDQVAGRIV 126
+ +GQRDLD++A + +
Sbjct: 125 SENGQRDLDRIAAQTL 140
>sp|P24494|RS19G_ASCSU 40S ribosomal protein S19G OS=Ascaris suum GN=RPS19G PE=2 SV=1
Length = 148
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 15/140 (10%)
Query: 1 MATARTVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAAS 46
M A +VKDV HE V+ + LK+SGK K ELAP + DWYYVR AS
Sbjct: 1 MVKATSVKDVDQHEIVQHIAKFLKKSGKVKVPEWSDVTKMGISKELAPLNSDWYYVRTAS 60
Query: 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG 106
+AR++Y+R GV + R +YGGSKR G P HF K+SG++ R LQ L+ + + P G
Sbjct: 61 IARRLYVRSPTGVDALRLVYGGSKRRGVVPNHFAKASGSVIRKALQTLEAIKWVQKHPDG 120
Query: 107 -GRRITSSGQRDLDQVAGRI 125
GR +T G++DLD++A ++
Sbjct: 121 NGRVLTKQGRKDLDRIASQM 140
>sp|O15631|RS19_ENTHI 40S ribosomal protein S19 OS=Entamoeba histolytica GN=RPS19 PE=2
SV=1
Length = 148
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 82/135 (60%), Gaps = 15/135 (11%)
Query: 6 TVKDVSPHEFVKAYSAHLKRSGKF--------------KELAPYDPDWYYVRAASMARKI 51
+KDV +F+KAY+ HLK+SGK KELAP +PDW Y+RAA++ARK+
Sbjct: 6 NIKDVVAIDFIKAYAEHLKKSGKLEIPEWVDTVKTGMCKELAPLNPDWIYIRAAAIARKV 65
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111
YL G+GV + RR YG P H SG + R+ILQQL+ M I+ + + GR +T
Sbjct: 66 YLNNGIGVMALRRAYGDQYNKHYYPSHRTLGSGKVNRYILQQLEKMGIVG-KIQSGRSLT 124
Query: 112 SSGQRDLDQVAGRIV 126
G++D+D++A + +
Sbjct: 125 KEGRKDMDKIASKFI 139
>sp|O18650|RS19_CAEEL 40S ribosomal protein S19 OS=Caenorhabditis elegans GN=rps-19 PE=2
SV=1
Length = 146
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 84/137 (61%), Gaps = 16/137 (11%)
Query: 1 MATARTVKDVSPHEFVKAYSAHLKRSGKFK--------------ELAPYDPDWYYVRAAS 46
M A ++KDV HE K+ + LK+SGK K ELAP DPDW+Y RAAS
Sbjct: 1 MTRATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAAS 60
Query: 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG 106
+AR +Y R G+G+F+++YGG+KR G P HF S+G R +QQL+ + ++ P G
Sbjct: 61 LARHLYFRPA-GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDG 119
Query: 107 -GRRITSSGQRDLDQVA 122
GR ++ G++DLD++A
Sbjct: 120 KGRILSKQGRKDLDRIA 136
>sp|Q9YD22|RS19E_AERPE 30S ribosomal protein S19e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps19e
PE=3 SV=1
Length = 153
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 3 TARTVKDVSPHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLR-QGLGVGS 61
AR +K+ P A+ A+ ++G KE P D DW+YVRAAS+ RK+Y + +G+ +
Sbjct: 16 VARKLKEKYPQVKPPAW-AYFAKTGPHKERPPTDRDWWYVRAASILRKLYKSPEPIGIET 74
Query: 62 FRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 121
FR IYGG + GS P HF K+ G++ R ILQQL+ ++ P GR I+ +G+ LD
Sbjct: 75 FRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQLEEAGLVVKVPGRGRTISPAGRSLLDTT 134
Query: 122 AGRIV 126
A I+
Sbjct: 135 AREIM 139
>sp|O27653|RS19E_METTH 30S ribosomal protein S19e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rps19e PE=3 SV=1
Length = 145
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 25 RSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSG 84
++G KE P +PDW+YVRAA++ R++Y+ +GV S R YGG K GSRP F + SG
Sbjct: 36 KTGVHKERRPENPDWWYVRAAALLRRVYIDGPVGVNSLRTHYGGKKDRGSRPEKFRRGSG 95
Query: 85 AIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRI 125
AI R LQQL+ +I E + GR IT G+ LD+ A +
Sbjct: 96 AIIRRALQQLEESGLIKRE-ENGRVITPEGRSFLDKAAAEV 135
>sp|O28210|RS19E_ARCFU 30S ribosomal protein S19e OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps19e PE=3 SV=1
Length = 147
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 73/124 (58%), Gaps = 7/124 (5%)
Query: 3 TARTVKD-VSPHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGS 61
A +KD V+P E+ K ++G KE +P DW+Y+R AS+ R++Y+ +G+
Sbjct: 16 VAERLKDMVAPPEWAKYV-----KTGVHKERSPEQDDWWYLRLASIFRRVYIDGPVGIER 70
Query: 62 FRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 121
R YGG KR GS+PP F K SGAI R+ L QL+ + + + + GR +T G+ LD+V
Sbjct: 71 LRTFYGGRKRRGSKPPKFRKGSGAIVRNALHQLEQLGFVK-KTREGRVVTPMGRSFLDKV 129
Query: 122 AGRI 125
A +
Sbjct: 130 ATEL 133
>sp|P54057|RS19E_METJA 30S ribosomal protein S19e OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps19e PE=3 SV=1
Length = 148
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 14/133 (10%)
Query: 6 TVKDVSPHEFVKAYSAHLK-------------RSGKFKELAPYDPDWYYVRAASMARKIY 52
TV DV + ++ + LK ++G +E P DW+Y+R AS+ RKIY
Sbjct: 3 TVYDVPADKLIQKTAEKLKEMNIGVPEWVDFVKTGVSRERRPDQDDWWYIRCASILRKIY 62
Query: 53 LRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITS 112
+ +GV R YGG K G P HF K SG I R LQ+L+ + +++ P+ GR +T
Sbjct: 63 IYGPVGVSRLRTAYGGRKNRGHEPEHFYKGSGNIIRKALQELEKLGLVEKTPE-GRVVTP 121
Query: 113 SGQRDLDQVAGRI 125
G+ LD +A +
Sbjct: 122 KGRSFLDNIAKEV 134
>sp|Q9V0G8|RS19E_PYRAB 30S ribosomal protein S19e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rps19e PE=1 SV=1
Length = 150
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 5 RTVKDVSPHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRR 64
+ + ++ P E+ A ++G+ KE P DW+Y R AS+ R++YL +G+ R
Sbjct: 21 KEIPEIKPPEW-----APFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRT 75
Query: 65 IYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGR 124
YGG K G P F K+ G+I R LQQL+ ++ P GR IT G+ LD++A
Sbjct: 76 YYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATE 135
Query: 125 I 125
+
Sbjct: 136 L 136
>sp|O59041|RS19E_PYRHO 30S ribosomal protein S19e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps19e PE=3 SV=1
Length = 150
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 5 RTVKDVSPHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRR 64
+ + ++ P E+ A ++G+ KE P DW+Y R AS+ R++Y+ +G+ R
Sbjct: 21 KEIPEIKPPEW-----APFVKTGRHKERLPEQEDWWYYRVASILRRVYIDGPVGIERLRT 75
Query: 65 IYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGR 124
YGG K G P F K+ G+I R LQQL+ I+ P GR +T G+ LD++A
Sbjct: 76 YYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFIEKVPGKGRVVTPKGRSFLDKIATE 135
Query: 125 I 125
+
Sbjct: 136 L 136
>sp|P19952|RS19E_HALMA 30S ribosomal protein S19e OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps19e PE=1
SV=3
Length = 153
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 6 TVKDVSPHEFVKAYS--------------AHLKRSGKFKELAPYDPDWYYVRAASMARKI 51
T+ DV P E ++A + A ++G +EL P D++ RAAS+ RK+
Sbjct: 3 TLYDVPPEELIEALTETLADEDDIEAPDWAEFTKTGVDRELPPEQEDFWTRRAASLLRKV 62
Query: 52 YLRQGLGVGSFRRIYGGSKRNGSR----PPHFCKSSGAIARHILQQLQNMNIIDIEPKGG 107
+ +GV + R YG SK+ +R P K SG I R LQQL++ ++ G
Sbjct: 63 AVDGPVGVNALRSEYGTSKQGTTRYRVRPHQKTKGSGNIIRTALQQLEDAGYVETSENDG 122
Query: 108 RRITSSGQRDLDQVAGRIVV 127
RR+T G+ LD AG ++
Sbjct: 123 RRVTGDGRSLLDDTAGDLLT 142
>sp|Q9HM21|RS19E_THEAC 30S ribosomal protein S19e OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps19e PE=3 SV=1
Length = 150
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 25 RSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSG 84
++G +E +P + DW YVRAA+M RK+Y+ LG+ YGG GS+ H + S
Sbjct: 36 KTGISREKSPVNRDWIYVRAAAMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAAQGSR 95
Query: 85 AIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIV 126
+I R++ +L+ + PK GR ++ G LD + I+
Sbjct: 96 SIIRYLFHELEKAGYVQKTPK-GRSLSPQGMSLLDNASKDII 136
>sp|Q97CU4|RS19E_THEVO 30S ribosomal protein S19e OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rps19e PE=3 SV=1
Length = 150
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 25 RSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSG 84
++G KE P DW YVRAASM RK+Y+ LG+ YGG GS+ H S
Sbjct: 36 KTGVSKEKPPLQDDWIYVRAASMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAASGSR 95
Query: 85 AIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIV 126
+I R + +L++ ++ K GR ++ G LD + I+
Sbjct: 96 SITRFLFHELESAGLVQKTQK-GRSLSPQGMSLLDNASKEII 136
>sp|Q8SQS8|RS19_ENCCU 40S ribosomal protein S19 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPS19 PE=1 SV=1
Length = 137
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
Query: 7 VKDVSPHEFVKAYSAHLK--------------RSGKFKELAPYDPDWYYVRAASMARKIY 52
+ +V P +F +A ++LK ++G+ +E AP + DWY+ R AS+ R+I
Sbjct: 5 IYEVMPEKFNEALKSYLKSTNEVVPLQDHDIMKTGEGREQAPIEEDWYFTRMASIVRQIS 64
Query: 53 LRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITS 112
++ + + YG K G RP + + I +L+ L+NM I+ PK +T
Sbjct: 65 IKGAVTSEFLAKRYGSLKNRGCRPSKYVGAYPEIGESVLENLKNMGWINEHPKD--MLTE 122
Query: 113 SGQRDLDQVAGRI 125
G+ + ++ ++
Sbjct: 123 KGKTIVREIIEKV 135
>sp|P30664|MCM4B_XENLA DNA replication licensing factor mcm4-B OS=Xenopus laevis GN=mcm4-b
PE=1 SV=3
Length = 863
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 24 KRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGS 74
+R KELA PD Y AA++A IY + + G +++GG++++ S
Sbjct: 444 ERVAMLKELAA-KPDIYERLAAALAPSIYEHEDIKKGILLQLFGGTRKDFS 493
>sp|Q5XK83|MCM4A_XENLA DNA replication licensing factor mcm4-A OS=Xenopus laevis GN=mcm4-a
PE=1 SV=1
Length = 858
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 24 KRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGS 74
+R KELA PD Y AA++A IY + + G +++GG++++ S
Sbjct: 439 ERVAVLKELAA-KPDIYERLAAALAPSIYEHEDIKKGILLQLFGGTRKDFS 488
>sp|Q6GL41|MCM4_XENTR DNA replication licensing factor mcm4 OS=Xenopus tropicalis GN=mcm4
PE=2 SV=1
Length = 863
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 24 KRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGS 74
+R KELA PD Y A+++A IY + + G +++GG++++ S
Sbjct: 444 ERVAMLKELAA-KPDIYERLASALAPSIYEHEDIKKGILLQLFGGTRKDFS 493
>sp|A9L5P0|ACPS_SHEB9 Holo-[acyl-carrier-protein] synthase OS=Shewanella baltica (strain
OS195) GN=acpS PE=3 SV=1
Length = 127
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
Query: 21 AHLKRSGK--------FKELAPY----DPDWYYVRAASMARKIYLRQGLGVG---SFRRI 65
AH+ R+G ELA Y P Y + + G G+G SF+ I
Sbjct: 18 AHVARAGNKLAKRVLTEAELAIYTAHSQPSRYLAKRFAAKEAAAKALGTGIGRGVSFQHI 77
Query: 66 YGGSKRNGSRPPHFCKSSGAIARHILQQLQ 95
+ G+ +G+ HF + GA+AR LQQL+
Sbjct: 78 HIGNNEDGAPTIHFTE--GALAR--LQQLK 103
>sp|B8EBP8|ACPS_SHEB2 Holo-[acyl-carrier-protein] synthase OS=Shewanella baltica (strain
OS223) GN=acpS PE=3 SV=1
Length = 127
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 1 MATARTVKDVSPHEFVKAYSAHL-----KRSGKFKELAPY----DPDWYYVRAASMARKI 51
MA D+ E ++A+ A KR ELA Y P Y + +
Sbjct: 1 MAIVGLGTDIVEIERIQAHVARAGDKLAKRVLTEAELAIYTGHSQPSRYLAKRFAAKEAA 60
Query: 52 YLRQGLGVG---SFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQ 95
G G+G SF+ I+ G+ +G+ HF + GA+AR LQQL+
Sbjct: 61 AKALGTGIGRGVSFQHIHIGNNEDGAPTIHFTE--GALAR--LQQLK 103
>sp|Q74L90|EFG_LACJO Elongation factor G OS=Lactobacillus johnsonii (strain CNCM I-12250
/ La1 / NCC 533) GN=fusA PE=3 SV=1
Length = 698
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 16 VKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSR 75
VK Y AH ++G EL D + A++A KI +G +F R+Y GS ++GS
Sbjct: 287 VKPYVAHDPKTGDEVELMADDKKPF----AALAFKIATDPFVGRLTFIRVYTGSLQSGSY 342
Query: 76 PPHFCKSSGAIARHILQQLQN 96
+ K+S +LQ N
Sbjct: 343 VLNASKNSRERVGRLLQMHAN 363
>sp|A2AKK5|ACNT1_MOUSE Acyl-coenzyme A amino acid N-acyltransferase 1 OS=Mus musculus
GN=Acnat1 PE=1 SV=1
Length = 416
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 83 SGAIA-RHILQQLQNMNIIDIEPKGGRRITSSGQRD 117
SGA+ RH Q LQN NI+ +E G+ + G+ D
Sbjct: 290 SGAVCFRHTTQYLQNKNILPVEKAQGKILFIVGEND 325
>sp|A8YXK3|EFG_LACH4 Elongation factor G OS=Lactobacillus helveticus (strain DPC 4571)
GN=fusA PE=3 SV=1
Length = 697
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 16 VKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSR 75
VK Y AH ++G EL D + A++A KI +G +F R+Y GS +GS
Sbjct: 287 VKPYVAHDPKTGDEVELMADDKKPF----AALAFKIATDPFVGRLTFIRVYTGSLESGSY 342
Query: 76 PPHFCKSSGAIARHILQQLQN 96
+ K+S +LQ N
Sbjct: 343 VLNASKNSRERVGRLLQMHAN 363
>sp|Q5FM92|EFG_LACAC Elongation factor G OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=fusA PE=3 SV=1
Length = 697
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 16 VKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSR 75
VK Y AH ++G EL D + A++A KI +G +F R+Y GS +GS
Sbjct: 287 VKPYVAHDPKTGDEVELMADDKKPF----AALAFKIATDPFVGRLTFIRVYTGSLESGSY 342
Query: 76 PPHFCKSSGAIARHILQQLQN 96
+ K+S +LQ N
Sbjct: 343 VLNASKNSRERVGRLLQMHAN 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,703,290
Number of Sequences: 539616
Number of extensions: 1983283
Number of successful extensions: 3988
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3912
Number of HSP's gapped (non-prelim): 51
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)