Query 033029
Match_columns 129
No_of_seqs 106 out of 326
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:31:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_T 40S ribosomal protein S 100.0 1.4E-68 4.8E-73 405.3 10.6 127 1-128 1-142 (144)
2 2xzm_T RPS19E; ribosome, trans 100.0 4.5E-67 1.5E-71 401.0 12.9 125 3-127 6-149 (155)
3 3iz6_S 40S ribosomal protein S 100.0 1.1E-67 3.8E-72 401.2 7.1 125 4-128 6-144 (146)
4 2v7f_A RPS19, RPS19E SSU ribos 100.0 2.6E-46 8.9E-51 283.2 9.2 124 4-127 1-138 (150)
5 2pg4_A Uncharacterized protein 97.4 0.00052 1.8E-08 45.5 6.4 71 41-125 14-90 (95)
6 1r7j_A Conserved hypothetical 97.4 0.00052 1.8E-08 47.0 6.5 63 44-123 10-72 (95)
7 1on2_A Transcriptional regulat 97.1 0.0025 8.7E-08 44.4 8.0 63 47-123 13-75 (142)
8 2h09_A Transcriptional regulat 97.1 0.002 6.8E-08 45.7 7.5 63 47-123 45-107 (155)
9 3g3z_A NMB1585, transcriptiona 97.1 0.0025 8.6E-08 44.0 7.8 66 46-125 35-106 (145)
10 2gxg_A 146AA long hypothetical 97.0 0.0025 8.5E-08 43.7 7.2 64 46-124 41-110 (146)
11 3oop_A LIN2960 protein; protei 97.0 0.0027 9.3E-08 43.7 7.1 65 47-125 42-112 (143)
12 2x4h_A Hypothetical protein SS 97.0 0.0038 1.3E-07 43.2 7.7 55 54-123 29-83 (139)
13 3ech_A MEXR, multidrug resista 96.9 0.0034 1.2E-07 43.3 7.2 66 46-125 41-112 (142)
14 1jgs_A Multiple antibiotic res 96.9 0.0056 1.9E-07 41.6 8.1 66 46-125 38-109 (138)
15 2frh_A SARA, staphylococcal ac 96.9 0.0026 9.1E-08 44.0 6.4 65 47-125 42-114 (127)
16 1sfx_A Conserved hypothetical 96.9 0.0041 1.4E-07 40.4 6.9 85 15-125 5-94 (109)
17 2qww_A Transcriptional regulat 96.8 0.0038 1.3E-07 43.4 6.8 64 47-124 46-117 (154)
18 3eco_A MEPR; mutlidrug efflux 96.8 0.0051 1.7E-07 42.0 7.3 66 46-125 35-108 (139)
19 3bja_A Transcriptional regulat 96.8 0.0044 1.5E-07 42.0 6.9 65 47-125 38-108 (139)
20 2hr3_A Probable transcriptiona 96.8 0.0057 1.9E-07 42.0 7.5 66 45-124 38-110 (147)
21 2nyx_A Probable transcriptiona 96.8 0.0059 2E-07 43.6 7.6 65 47-125 50-120 (168)
22 3bro_A Transcriptional regulat 96.8 0.0075 2.6E-07 41.0 7.8 64 47-124 39-110 (141)
23 3bpv_A Transcriptional regulat 96.7 0.0058 2E-07 41.4 7.0 66 46-125 33-104 (138)
24 4hbl_A Transcriptional regulat 96.7 0.0042 1.4E-07 43.3 6.5 65 47-125 46-116 (149)
25 3e6m_A MARR family transcripti 96.7 0.006 2E-07 43.1 6.9 66 46-125 57-128 (161)
26 3s2w_A Transcriptional regulat 96.6 0.0074 2.5E-07 42.4 7.3 65 47-125 55-125 (159)
27 3k0l_A Repressor protein; heli 96.6 0.0076 2.6E-07 42.6 7.4 66 46-125 50-121 (162)
28 3tgn_A ADC operon repressor AD 96.6 0.013 4.6E-07 40.0 8.5 92 13-122 6-109 (146)
29 1tbx_A ORF F-93, hypothetical 96.6 0.0057 2E-07 40.4 6.3 70 46-125 12-84 (99)
30 2fsw_A PG_0823 protein; alpha- 96.6 0.0037 1.3E-07 42.4 5.5 63 46-122 29-97 (107)
31 3kp7_A Transcriptional regulat 96.6 0.009 3.1E-07 41.5 7.5 63 47-124 43-113 (151)
32 3hsr_A HTH-type transcriptiona 96.6 0.0042 1.4E-07 42.9 5.7 66 46-125 40-111 (140)
33 1ub9_A Hypothetical protein PH 96.6 0.0069 2.4E-07 39.3 6.4 66 46-125 20-91 (100)
34 2qvo_A Uncharacterized protein 96.6 0.0044 1.5E-07 41.1 5.5 68 43-125 13-88 (95)
35 3nrv_A Putative transcriptiona 96.6 0.01 3.5E-07 40.8 7.6 65 46-124 44-114 (148)
36 1lj9_A Transcriptional regulat 96.6 0.024 8.1E-07 38.7 9.3 65 47-125 34-104 (144)
37 2nnn_A Probable transcriptiona 96.6 0.0086 2.9E-07 40.5 6.9 65 46-124 42-112 (140)
38 2eth_A Transcriptional regulat 96.5 0.012 4.3E-07 41.0 7.9 65 46-124 48-118 (154)
39 2oqg_A Possible transcriptiona 96.5 0.0083 2.8E-07 40.1 6.8 63 46-124 25-91 (114)
40 2bv6_A MGRA, HTH-type transcri 96.5 0.0049 1.7E-07 42.2 5.7 64 47-124 42-111 (142)
41 2fa5_A Transcriptional regulat 96.5 0.012 4E-07 41.2 7.7 64 47-124 54-123 (162)
42 2rdp_A Putative transcriptiona 96.5 0.012 4.2E-07 40.4 7.7 65 47-125 47-117 (150)
43 3jw4_A Transcriptional regulat 96.5 0.0052 1.8E-07 42.6 5.7 66 46-125 45-118 (148)
44 3cuo_A Uncharacterized HTH-typ 96.5 0.0097 3.3E-07 38.6 6.7 65 46-125 28-96 (99)
45 2fbh_A Transcriptional regulat 96.5 0.015 5.1E-07 39.6 7.7 64 47-124 42-112 (146)
46 2fbi_A Probable transcriptiona 96.4 0.0093 3.2E-07 40.4 6.6 66 46-125 40-111 (142)
47 2hzt_A Putative HTH-type trans 96.4 0.0095 3.2E-07 40.5 6.6 63 46-122 18-86 (107)
48 3bj6_A Transcriptional regulat 96.4 0.011 3.8E-07 40.7 7.1 64 47-124 45-114 (152)
49 2a61_A Transcriptional regulat 96.4 0.01 3.5E-07 40.5 6.8 65 46-124 37-107 (145)
50 3cjn_A Transcriptional regulat 96.4 0.01 3.6E-07 41.5 6.8 64 47-124 57-126 (162)
51 1stz_A Heat-inducible transcri 96.4 0.012 4.2E-07 48.4 8.2 68 43-122 18-92 (338)
52 1z7u_A Hypothetical protein EF 96.3 0.0076 2.6E-07 41.3 5.6 63 46-122 26-94 (112)
53 3deu_A Transcriptional regulat 96.3 0.011 3.8E-07 42.4 6.5 65 47-125 58-129 (166)
54 1s3j_A YUSO protein; structura 96.3 0.011 3.8E-07 40.9 6.3 65 46-124 41-111 (155)
55 3cdh_A Transcriptional regulat 96.2 0.017 5.9E-07 40.1 7.2 65 46-124 47-117 (155)
56 3fm5_A Transcriptional regulat 96.2 0.019 6.4E-07 39.8 7.3 65 47-125 44-115 (150)
57 3hrs_A Metalloregulator SCAR; 96.2 0.013 4.5E-07 44.6 7.0 56 54-123 18-73 (214)
58 4a5n_A Uncharacterized HTH-typ 96.1 0.02 7E-07 41.3 7.0 65 45-123 29-99 (131)
59 2f2e_A PA1607; transcription f 96.1 0.019 6.4E-07 41.4 6.8 62 46-122 28-94 (146)
60 1xmk_A Double-stranded RNA-spe 96.0 0.0096 3.3E-07 40.2 4.8 59 45-118 14-76 (79)
61 3l7w_A Putative uncharacterize 96.0 0.0078 2.7E-07 41.3 4.3 67 47-124 14-87 (108)
62 2pex_A Transcriptional regulat 96.0 0.0088 3E-07 41.5 4.5 62 47-122 52-119 (153)
63 3u2r_A Regulatory protein MARR 96.0 0.016 5.3E-07 41.2 5.9 65 47-125 51-123 (168)
64 2p8t_A Hypothetical protein PH 95.9 0.019 6.4E-07 44.9 6.7 55 54-123 28-82 (200)
65 1okr_A MECI, methicillin resis 95.9 0.0085 2.9E-07 40.6 4.2 66 47-122 15-84 (123)
66 2o0m_A Transcriptional regulat 95.9 0.0013 4.4E-08 53.5 0.0 64 43-121 21-84 (345)
67 3nqo_A MARR-family transcripti 95.8 0.04 1.4E-06 40.3 7.7 66 46-125 45-118 (189)
68 3df8_A Possible HXLR family tr 95.7 0.02 6.9E-07 39.4 5.6 63 46-122 31-97 (111)
69 3bdd_A Regulatory protein MARR 95.7 0.014 4.7E-07 39.6 4.6 58 47-118 36-99 (142)
70 1y0u_A Arsenical resistance op 95.7 0.023 7.9E-07 37.5 5.4 55 45-116 34-88 (96)
71 3f3x_A Transcriptional regulat 95.6 0.036 1.2E-06 38.0 6.5 64 47-125 42-111 (144)
72 2b0l_A GTP-sensing transcripti 95.6 0.013 4.3E-07 40.5 4.0 51 58-122 45-97 (102)
73 3boq_A Transcriptional regulat 95.6 0.025 8.6E-07 39.3 5.6 65 47-125 52-123 (160)
74 1z91_A Organic hydroperoxide r 95.6 0.01 3.5E-07 40.7 3.5 63 46-122 44-112 (147)
75 3tqn_A Transcriptional regulat 95.5 0.092 3.1E-06 36.1 8.4 68 40-121 10-84 (113)
76 1bja_A Transcription regulator 95.5 0.033 1.1E-06 38.9 6.0 64 45-123 19-83 (95)
77 3f8b_A Transcriptional regulat 95.4 0.023 7.7E-07 39.7 5.0 44 81-124 44-95 (116)
78 3b73_A PHIH1 repressor-like pr 95.4 0.037 1.3E-06 39.1 6.1 63 45-119 16-78 (111)
79 2obp_A Putative DNA-binding pr 95.4 0.053 1.8E-06 37.7 6.6 62 46-121 20-91 (96)
80 2y75_A HTH-type transcriptiona 95.3 0.039 1.3E-06 38.3 6.0 60 43-116 10-74 (129)
81 1q1h_A TFE, transcription fact 95.2 0.022 7.6E-07 38.3 4.3 53 45-111 21-78 (110)
82 4b8x_A SCO5413, possible MARR- 95.2 0.045 1.5E-06 38.6 6.1 85 14-124 19-111 (147)
83 1yyv_A Putative transcriptiona 95.2 0.027 9.1E-07 40.1 4.7 63 46-122 39-107 (131)
84 3neu_A LIN1836 protein; struct 95.0 0.2 6.7E-06 35.1 8.8 61 40-114 14-81 (125)
85 2fxa_A Protease production reg 94.9 0.053 1.8E-06 40.7 5.9 65 46-124 52-122 (207)
86 1fx7_A Iron-dependent represso 94.8 0.041 1.4E-06 42.0 5.1 54 56-123 22-77 (230)
87 3by6_A Predicted transcription 94.7 0.16 5.6E-06 35.7 7.7 60 40-113 12-78 (126)
88 1yg2_A Gene activator APHA; vi 94.7 0.11 3.9E-06 38.2 7.1 72 46-124 6-85 (179)
89 3pqk_A Biofilm growth-associat 94.6 0.21 7.3E-06 32.9 7.9 60 46-120 27-89 (102)
90 3ihu_A Transcriptional regulat 94.6 0.045 1.5E-06 41.1 4.8 51 57-121 40-90 (222)
91 4esb_A Transcriptional regulat 94.5 0.069 2.4E-06 37.2 5.3 70 47-125 14-91 (115)
92 1hsj_A Fusion protein consisti 94.4 0.076 2.6E-06 43.5 6.1 66 47-126 409-482 (487)
93 3ic7_A Putative transcriptiona 94.4 0.035 1.2E-06 39.2 3.5 68 41-122 13-87 (126)
94 2qq9_A Diphtheria toxin repres 94.3 0.057 2E-06 41.2 5.0 63 47-123 11-77 (226)
95 4aik_A Transcriptional regulat 94.3 0.21 7.2E-06 35.4 7.7 65 47-125 36-107 (151)
96 2fbk_A Transcriptional regulat 94.2 0.07 2.4E-06 38.4 4.9 64 47-124 74-146 (181)
97 1xma_A Predicted transcription 94.1 0.062 2.1E-06 39.0 4.6 71 47-124 46-124 (145)
98 3sxy_A Transcriptional regulat 94.1 0.041 1.4E-06 41.1 3.7 52 57-122 36-87 (218)
99 3jth_A Transcription activator 94.0 0.21 7.3E-06 32.6 6.7 66 46-126 27-95 (98)
100 2co5_A Viral protein F93; vira 94.0 0.099 3.4E-06 36.0 5.2 43 83-125 43-88 (99)
101 2ek5_A Predicted transcription 93.9 0.22 7.6E-06 35.3 7.1 47 58-118 30-76 (129)
102 2hs5_A Putative transcriptiona 93.8 0.063 2.1E-06 41.1 4.3 67 41-121 30-102 (239)
103 3hhh_A Transcriptional regulat 93.8 0.087 3E-06 36.9 4.6 69 47-124 18-94 (116)
104 2wte_A CSA3; antiviral protein 93.7 0.18 6E-06 39.6 6.9 64 43-120 153-217 (244)
105 4fx0_A Probable transcriptiona 93.7 0.11 3.7E-06 36.8 5.2 64 46-123 37-110 (148)
106 3f6v_A Possible transcriptiona 93.7 0.12 4.3E-06 37.5 5.5 64 45-124 61-128 (151)
107 3c7j_A Transcriptional regulat 93.6 0.075 2.6E-06 40.8 4.5 52 56-121 49-100 (237)
108 4esf_A PADR-like transcription 93.6 0.1 3.5E-06 36.5 4.8 44 81-124 41-92 (117)
109 2esh_A Conserved hypothetical 93.4 0.06 2.1E-06 37.2 3.3 71 47-124 18-96 (118)
110 1ku9_A Hypothetical protein MJ 93.3 0.42 1.4E-05 32.1 7.4 84 13-122 9-97 (152)
111 1v4r_A Transcriptional repress 93.2 0.1 3.5E-06 34.9 4.0 43 58-114 37-79 (102)
112 2dql_A PEX protein; circadian 93.0 0.14 4.9E-06 35.6 4.8 45 81-125 53-106 (115)
113 3f6o_A Probable transcriptiona 92.9 0.26 8.8E-06 33.7 5.8 64 46-124 22-88 (118)
114 1mkm_A ICLR transcriptional re 92.8 0.54 1.8E-05 36.0 8.2 60 42-115 8-68 (249)
115 1u2w_A CADC repressor, cadmium 92.7 0.53 1.8E-05 32.4 7.4 60 46-120 46-109 (122)
116 2jt1_A PEFI protein; solution 92.7 0.31 1.1E-05 32.3 5.9 53 43-110 5-63 (77)
117 4ham_A LMO2241 protein; struct 92.7 0.088 3E-06 37.1 3.3 61 40-114 15-82 (134)
118 1sd4_A Penicillinase repressor 92.7 0.26 8.8E-06 33.2 5.6 50 47-106 15-64 (126)
119 2kko_A Possible transcriptiona 92.5 0.16 5.6E-06 34.3 4.4 81 11-120 7-91 (108)
120 1r1u_A CZRA, repressor protein 92.4 0.65 2.2E-05 30.9 7.3 77 13-118 10-90 (106)
121 2e1n_A PEX, period extender; c 92.3 0.14 4.8E-06 37.1 4.0 46 80-125 64-118 (138)
122 2htj_A P fimbrial regulatory p 92.3 0.19 6.5E-06 32.2 4.3 45 46-104 4-48 (81)
123 2g9w_A Conserved hypothetical 92.2 0.26 9E-06 34.4 5.3 59 46-115 13-78 (138)
124 2d1h_A ST1889, 109AA long hypo 91.9 0.89 3E-05 29.0 7.3 44 47-104 26-70 (109)
125 2di3_A Bacterial regulatory pr 91.9 0.097 3.3E-06 39.6 2.9 44 59-116 31-78 (239)
126 1ylf_A RRF2 family protein; st 91.9 0.32 1.1E-05 34.8 5.6 58 44-115 16-76 (149)
127 1p4x_A Staphylococcal accessor 91.8 0.42 1.4E-05 37.4 6.5 41 85-125 189-235 (250)
128 3ri2_A Transcriptional regulat 91.5 0.28 9.7E-06 34.8 4.8 45 81-125 49-100 (123)
129 2zfw_A PEX; five alpha-helices 91.4 0.19 6.3E-06 37.0 3.9 45 81-125 75-128 (148)
130 3u1d_A Uncharacterized protein 91.2 0.24 8.1E-06 37.1 4.3 62 46-120 33-107 (151)
131 3cta_A Riboflavin kinase; stru 91.2 0.22 7.6E-06 37.6 4.3 73 38-124 9-84 (230)
132 3aaf_A Werner syndrome ATP-dep 91.2 1 3.5E-05 32.3 7.6 77 46-122 20-110 (134)
133 3l9f_A Putative uncharacterize 91.2 0.16 5.4E-06 39.1 3.4 65 54-124 47-119 (204)
134 2xrn_A HTH-type transcriptiona 91.1 0.24 8.1E-06 38.0 4.4 59 42-114 6-66 (241)
135 2jsc_A Transcriptional regulat 91.0 0.56 1.9E-05 32.1 5.8 55 46-116 25-83 (118)
136 3elk_A Putative transcriptiona 91.0 0.14 4.8E-06 35.8 2.7 67 47-122 19-93 (117)
137 3l09_A Putative transcriptiona 90.9 0.26 8.8E-06 39.8 4.6 74 42-126 22-104 (266)
138 3t8r_A Staphylococcus aureus C 90.9 0.32 1.1E-05 34.9 4.7 56 46-115 15-75 (143)
139 1hw1_A FADR, fatty acid metabo 90.7 0.15 5.1E-06 38.2 2.8 42 58-113 33-74 (239)
140 3mq0_A Transcriptional repress 90.5 0.39 1.3E-05 37.7 5.2 58 42-113 30-88 (275)
141 3k69_A Putative transcription 89.8 0.48 1.7E-05 34.8 4.9 54 47-114 17-74 (162)
142 3eet_A Putative GNTR-family tr 89.7 1 3.5E-05 35.3 7.1 60 40-113 30-96 (272)
143 1r1t_A Transcriptional repress 89.7 0.88 3E-05 31.5 6.0 75 11-114 28-106 (122)
144 1p6r_A Penicillinase repressor 89.6 0.27 9.3E-06 31.3 3.0 51 47-108 14-64 (82)
145 2o0y_A Transcriptional regulat 89.0 1.1 3.7E-05 34.6 6.6 60 42-115 23-83 (260)
146 3edp_A LIN2111 protein; APC883 88.7 1.2 4.2E-05 34.0 6.7 59 41-113 11-76 (236)
147 2lkp_A Transcriptional regulat 88.7 1.1 3.9E-05 29.9 5.8 81 12-120 15-96 (119)
148 3lwf_A LIN1550 protein, putati 88.2 0.84 2.9E-05 33.6 5.2 46 55-114 43-90 (159)
149 3r4k_A Transcriptional regulat 88.1 0.47 1.6E-05 36.7 4.0 58 42-113 6-65 (260)
150 2k4b_A Transcriptional regulat 88.0 0.35 1.2E-05 33.1 2.9 51 47-108 40-90 (99)
151 1i1g_A Transcriptional regulat 87.8 1.6 5.4E-05 29.9 6.2 67 46-127 8-86 (141)
152 1xn7_A Hypothetical protein YH 86.9 1.2 4.1E-05 29.4 4.9 44 46-103 6-49 (78)
153 1uly_A Hypothetical protein PH 86.6 1.6 5.4E-05 32.8 6.1 65 46-125 24-104 (192)
154 2wv0_A YVOA, HTH-type transcri 86.5 0.61 2.1E-05 35.8 3.8 60 40-113 11-77 (243)
155 1p4x_A Staphylococcal accessor 86.3 0.69 2.4E-05 36.1 4.0 65 47-125 39-111 (250)
156 1xd7_A YWNA; structural genomi 86.3 0.69 2.4E-05 32.9 3.7 54 46-114 13-68 (145)
157 2rkh_A Putative APHA-like tran 86.1 0.25 8.6E-06 37.5 1.4 36 90-125 54-96 (180)
158 2g7u_A Transcriptional regulat 86.1 0.88 3E-05 35.0 4.5 58 42-114 14-72 (257)
159 1in4_A RUVB, holliday junction 85.8 1 3.5E-05 35.6 4.8 53 51-118 271-324 (334)
160 2pn6_A ST1022, 150AA long hypo 85.4 2 6.9E-05 29.8 5.8 68 46-127 7-87 (150)
161 2heo_A Z-DNA binding protein 1 85.2 2 6.8E-05 26.9 5.2 46 46-105 14-60 (67)
162 3r0a_A Putative transcriptiona 85.2 2.8 9.4E-05 28.8 6.3 45 46-104 30-76 (123)
163 2k02_A Ferrous iron transport 85.0 1.2 4E-05 30.3 4.2 44 46-103 6-49 (87)
164 1oyi_A Double-stranded RNA-bin 84.9 1.4 4.9E-05 29.8 4.6 61 1-104 4-64 (82)
165 3bwg_A Uncharacterized HTH-typ 84.9 0.68 2.3E-05 35.4 3.3 42 58-113 31-72 (239)
166 3f8m_A GNTR-family protein tra 84.6 0.62 2.1E-05 36.0 3.0 41 58-113 38-78 (248)
167 2w48_A Sorbitol operon regulat 83.4 2.3 7.9E-05 33.6 5.9 50 41-104 6-56 (315)
168 2ia0_A Putative HTH-type trans 83.3 8.4 0.00029 27.9 8.6 68 46-127 21-106 (171)
169 2cg4_A Regulatory protein ASNC 83.2 5.2 0.00018 27.9 7.2 68 46-127 12-91 (152)
170 2qm3_A Predicted methyltransfe 82.1 1.8 6.2E-05 34.8 4.9 57 46-120 47-103 (373)
171 3kfw_X Uncharacterized protein 81.9 1.7 5.9E-05 34.4 4.6 72 43-126 4-78 (247)
172 2ia2_A Putative transcriptiona 80.5 1.1 3.7E-05 34.7 2.9 57 42-113 21-78 (265)
173 3u5c_Z RP45, S31, YS23, 40S ri 80.1 0.8 2.7E-05 32.8 1.9 23 83-105 72-94 (108)
174 2p5v_A Transcriptional regulat 79.2 9.6 0.00033 26.8 7.5 67 46-127 14-94 (162)
175 2p4w_A Transcriptional regulat 78.8 2.9 0.0001 31.6 4.8 44 46-104 19-62 (202)
176 3iz6_V 40S ribosomal protein S 78.5 0.78 2.7E-05 32.8 1.4 23 83-105 73-95 (108)
177 1olt_A Oxygen-independent copr 78.3 1.5 5.2E-05 36.5 3.4 35 90-125 406-440 (457)
178 2fu4_A Ferric uptake regulatio 77.3 3.5 0.00012 25.9 4.2 52 45-105 20-73 (83)
179 2qlz_A Transcription factor PF 77.2 2 7E-05 33.5 3.6 42 46-102 16-57 (232)
180 2ra5_A Putative transcriptiona 77.0 0.63 2.2E-05 35.8 0.6 43 58-114 42-84 (247)
181 2dk5_A DNA-directed RNA polyme 76.4 6.2 0.00021 26.5 5.4 41 47-101 25-67 (91)
182 2xzm_8 RPS25E,; ribosome, tran 73.7 1.7 5.7E-05 32.6 2.2 23 82-104 75-97 (143)
183 1bm9_A RTP, TER, replication t 73.1 3.1 0.00011 30.0 3.4 31 86-116 56-96 (122)
184 2zkz_A Transcriptional repress 71.7 7.7 0.00026 25.4 4.9 78 14-120 12-93 (99)
185 3k2z_A LEXA repressor; winged 69.3 9.6 0.00033 27.9 5.5 40 56-109 24-63 (196)
186 2ijl_A AGR_C_4647P, molybdenum 69.2 5 0.00017 28.8 3.8 38 85-122 53-97 (135)
187 3pfi_A Holliday junction ATP-d 67.7 3.2 0.00011 31.9 2.7 33 86-119 295-328 (338)
188 2w25_A Probable transcriptiona 66.4 13 0.00043 25.8 5.4 43 46-102 11-53 (150)
189 1qbj_A Protein (double-strande 64.9 10 0.00035 24.9 4.4 43 47-103 15-60 (81)
190 3zsu_A TLL2057 protein, cyanoq 63.9 2.9 9.9E-05 30.7 1.6 59 36-105 46-104 (130)
191 2cfx_A HTH-type transcriptiona 62.4 17 0.00058 25.0 5.4 43 46-102 9-51 (144)
192 1bia_A BIRA bifunctional prote 59.8 17 0.00059 28.9 5.7 57 43-113 6-63 (321)
193 1ixc_A CBNR, LYSR-type regulat 59.2 6.7 0.00023 28.5 2.9 37 85-122 30-69 (294)
194 1qzz_A RDMB, aclacinomycin-10- 58.5 28 0.00094 27.1 6.6 49 53-115 46-96 (374)
195 2v1x_A ATP-dependent DNA helic 58.0 22 0.00074 30.7 6.4 76 44-119 446-534 (591)
196 3hhg_A Transcriptional regulat 57.9 10 0.00035 27.6 3.7 37 85-122 32-71 (306)
197 2dbb_A Putative HTH-type trans 56.3 18 0.00062 24.9 4.7 43 46-102 13-55 (151)
198 2cyy_A Putative HTH-type trans 56.0 16 0.00054 25.3 4.4 67 46-127 11-89 (151)
199 1tw3_A COMT, carminomycin 4-O- 55.6 25 0.00087 27.2 5.9 49 54-116 50-98 (360)
200 1j5y_A Transcriptional regulat 55.3 23 0.00079 25.7 5.3 58 42-114 21-80 (187)
201 2esn_A Probable transcriptiona 54.9 11 0.00036 27.8 3.4 36 86-122 40-78 (310)
202 2vxz_A Pyrsv_GP04; viral prote 54.7 24 0.00083 26.8 5.4 55 36-105 5-59 (165)
203 3szp_A Transcriptional regulat 53.6 12 0.00041 26.8 3.4 36 86-122 31-69 (291)
204 3isp_A HTH-type transcriptiona 53.4 19 0.00063 26.4 4.6 37 85-123 35-74 (303)
205 3fzv_A Probable transcriptiona 52.1 6.9 0.00024 28.6 2.0 37 86-122 34-73 (306)
206 3ijw_A Aminoglycoside N3-acety 51.9 6 0.00021 31.8 1.7 82 11-92 50-148 (268)
207 2qc0_A Uncharacterized protein 51.7 8.4 0.00029 31.5 2.6 50 45-109 300-349 (373)
208 1b9m_A Protein (mode); DNA-bin 51.7 15 0.00051 27.5 3.8 64 42-121 22-92 (265)
209 3ls0_A SLL1638 protein, PSBQ; 51.3 10 0.00035 27.9 2.7 77 15-105 24-107 (133)
210 1qgp_A Protein (double strande 50.7 16 0.00053 23.5 3.3 43 47-103 19-64 (77)
211 3fxq_A LYSR type regulator of 49.8 18 0.00061 26.6 4.0 37 85-122 31-70 (305)
212 3i53_A O-methyltransferase; CO 48.4 53 0.0018 25.1 6.7 51 54-118 36-86 (332)
213 3h87_C Putative uncharacterize 48.3 11 0.00037 25.0 2.3 26 1-28 1-26 (73)
214 3eqx_A FIC domain containing t 48.1 11 0.00038 31.0 2.8 49 46-109 301-349 (373)
215 2e1c_A Putative HTH-type trans 46.0 34 0.0012 24.6 4.9 67 46-127 31-109 (171)
216 2ip2_A Probable phenazine-spec 45.8 42 0.0014 25.6 5.7 51 54-118 39-89 (334)
217 2qlz_A Transcription factor PF 44.6 27 0.00091 27.0 4.4 51 46-111 168-218 (232)
218 1hqc_A RUVB; extended AAA-ATPa 43.6 14 0.0005 27.8 2.7 32 87-119 282-313 (324)
219 1u3o_A Huntingtin-associated p 42.0 4 0.00014 27.6 -0.6 13 32-44 47-59 (82)
220 3rkx_A Biotin-[acetyl-COA-carb 41.3 16 0.00056 29.3 2.8 54 46-113 7-63 (323)
221 3e3v_A Regulatory protein RECX 41.2 18 0.0006 26.7 2.8 53 36-96 111-165 (177)
222 3i4p_A Transcriptional regulat 40.9 40 0.0014 23.7 4.5 69 46-128 7-89 (162)
223 1t6s_A Conserved hypothetical 40.8 24 0.00082 26.2 3.4 51 41-108 92-146 (162)
224 3tvt_B PINS, partner of inscut 40.4 5.9 0.0002 24.4 0.0 24 82-105 15-38 (50)
225 2hoe_A N-acetylglucosamine kin 40.2 26 0.00088 28.0 3.8 43 46-103 24-66 (380)
226 1z6r_A MLC protein; transcript 39.4 45 0.0016 26.6 5.1 45 45-103 19-63 (406)
227 2h9b_A HTH-type transcriptiona 39.3 6.3 0.00021 29.4 0.0 35 86-121 31-68 (312)
228 1sfu_A 34L protein; protein/Z- 39.2 19 0.00065 23.9 2.4 58 5-104 6-63 (75)
229 1z05_A Transcriptional regulat 38.3 44 0.0015 27.1 4.9 46 44-103 41-86 (429)
230 3nrw_A Phage integrase/site-sp 36.4 28 0.00095 22.6 2.9 91 8-104 5-100 (117)
231 1i96_V Translation initiation 36.0 20 0.00069 24.3 2.2 32 80-111 47-79 (89)
232 2vn2_A DNAD, chromosome replic 35.6 26 0.00087 24.1 2.7 22 83-104 64-85 (128)
233 2gqq_A Leucine-responsive regu 35.2 11 0.00039 26.6 0.8 43 46-102 17-59 (163)
234 3mz1_A Putative transcriptiona 34.0 8.6 0.00029 27.6 0.0 35 87-122 29-66 (300)
235 2d48_A Interleukin-4; four hel 33.3 20 0.0007 26.3 1.9 18 39-56 43-60 (129)
236 2yu3_A DNA-directed RNA polyme 33.2 23 0.00077 24.2 2.1 44 47-104 42-87 (95)
237 1uth_A LYSR-type regulatory pr 33.0 9.1 0.00031 28.6 0.0 34 87-121 45-81 (315)
238 3d5l_A Regulatory protein RECX 32.9 11 0.00039 28.6 0.6 54 36-97 154-209 (221)
239 2h98_A HTH-type transcriptiona 32.8 9.2 0.00032 28.8 0.0 34 87-121 32-68 (313)
240 4asn_A TUBR; transcription, tu 32.5 61 0.0021 22.5 4.1 39 82-121 46-88 (101)
241 3gwz_A MMCR; methyltransferase 32.3 53 0.0018 25.8 4.4 50 54-117 69-119 (369)
242 3dv8_A Transcriptional regulat 30.3 63 0.0022 22.4 4.1 37 83-122 182-218 (220)
243 2ivy_A Hypothetical protein SS 29.8 31 0.0011 23.4 2.3 22 6-27 7-28 (101)
244 3t7a_A Inositol pyrophosphate 29.6 25 0.00084 29.4 2.1 17 38-54 296-312 (330)
245 3rq9_A TSI2, type VI secretion 29.5 16 0.00055 24.8 0.8 27 8-37 44-70 (85)
246 3mcz_A O-methyltransferase; ad 29.2 39 0.0013 26.0 3.1 51 54-119 54-104 (352)
247 2r3s_A Uncharacterized protein 28.7 65 0.0022 24.3 4.2 48 55-117 38-85 (335)
248 2crq_A Mitochondrial translati 26.6 13 0.00044 26.3 -0.2 27 79-105 59-85 (112)
249 2z99_A Putative uncharacterize 26.6 76 0.0026 24.7 4.3 40 47-103 105-144 (219)
250 2ife_A Protein (translation in 26.4 39 0.0013 23.3 2.3 32 79-110 57-90 (100)
251 3stq_A TSI2, putative uncharac 26.3 19 0.00065 25.1 0.7 27 8-37 69-95 (102)
252 3lst_A CALO1 methyltransferase 25.5 48 0.0016 25.8 3.0 50 54-118 53-102 (348)
253 4ev0_A Transcription regulator 25.1 62 0.0021 22.4 3.3 38 83-123 176-213 (216)
254 2f96_A Ribonuclease T; RNAse, 25.0 38 0.0013 24.9 2.2 55 40-98 159-217 (224)
255 2crq_A Mitochondrial translati 24.9 40 0.0014 23.7 2.2 40 87-126 33-75 (112)
256 1jg5_A GTP cyclohydrolase I fe 24.8 34 0.0012 23.3 1.7 39 61-100 26-65 (83)
257 3dp7_A SAM-dependent methyltra 24.7 1.1E+02 0.0038 23.9 5.1 57 47-118 40-97 (363)
258 2gau_A Transcriptional regulat 24.7 96 0.0033 21.8 4.3 23 81-103 191-213 (232)
259 3v32_B Ribonuclease ZC3H12A; r 24.5 70 0.0024 24.2 3.7 18 88-105 85-102 (185)
260 4fyk_A Deoxyribonucleoside 5'- 24.4 18 0.00063 26.6 0.3 32 50-101 4-35 (152)
261 3oon_A Outer membrane protein 24.3 51 0.0017 22.1 2.6 22 106-127 24-45 (123)
262 3a5y_A GENX, putative lysyl-tR 23.5 82 0.0028 25.6 4.1 57 9-71 272-333 (345)
263 2fmy_A COOA, carbon monoxide o 23.0 62 0.0021 22.7 3.0 21 83-103 180-200 (220)
264 1tig_A IF3-C, translation init 22.5 23 0.00079 24.2 0.5 32 79-110 51-83 (94)
265 3lcz_A YCZA, inhibitor of trap 22.5 20 0.00068 22.0 0.2 40 76-124 11-50 (53)
266 3ryp_A Catabolite gene activat 22.4 62 0.0021 22.3 2.8 21 83-103 180-200 (210)
267 1tvn_A Cellulase, endoglucanas 22.3 1E+02 0.0035 23.2 4.2 37 13-51 112-159 (293)
268 3exc_X Uncharacterized protein 22.3 57 0.0019 21.7 2.5 22 6-27 8-29 (91)
269 2xvc_A ESCRT-III, SSO0910; cel 21.7 64 0.0022 20.6 2.5 33 56-102 25-57 (59)
270 4g6q_A Putative uncharacterize 21.2 67 0.0023 23.3 2.9 48 42-104 24-71 (182)
271 3i4u_A ATP-dependent RNA helic 21.1 43 0.0015 26.2 1.9 32 83-118 16-47 (270)
272 2oz6_A Virulence factor regula 21.0 68 0.0023 22.0 2.8 21 83-103 177-197 (207)
273 3td3_A Outer membrane protein 21.0 62 0.0021 21.7 2.5 22 106-127 21-42 (123)
274 2yx5_A UPF0062 protein MJ1593; 20.9 1.1E+02 0.0036 19.8 3.6 44 82-129 17-70 (83)
275 3iwz_A CAP-like, catabolite ac 20.8 68 0.0023 22.4 2.8 21 83-103 200-220 (230)
276 2xub_A DNA-directed RNA polyme 20.6 1.1E+02 0.0036 26.2 4.4 59 44-104 103-161 (534)
277 1al3_A Cys regulon transcripti 20.5 21 0.00073 26.7 0.0 36 86-122 32-71 (324)
No 1
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=100.00 E-value=1.4e-68 Score=405.34 Aligned_cols=127 Identities=46% Similarity=0.900 Sum_probs=123.2
Q ss_pred CCCCCcccccChhHHHHHHHHHHHhcCC--------------CCCCCCCCCc-hHHHhHHHHHHHHHHhCCCchhhhHHH
Q 033029 1 MATARTVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPD-WYYVRAASMARKIYLRQGLGVGSFRRI 65 (129)
Q Consensus 1 m~~~~tv~DV~~~~fI~~~A~~LK~~gk--------------~kE~aP~d~D-W~Y~R~ASilR~lYl~g~vGV~~lr~~ 65 (129)
||+ +||||||||+||++||+|||++|| +||+||+||| |||+|||||||||||+||+||++|+++
T Consensus 1 m~~-~tvkDV~a~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~kEl~P~d~D~W~Y~RaASi~R~lYl~g~vGV~~lrk~ 79 (144)
T 3u5c_T 1 MPG-VSVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARHIYMRKQVGVGKLNKL 79 (144)
T ss_dssp -CC-CCSTTSCHHHHHHHHHHHHHHHCCCCCTTTTTSCCSCTTCSSCCSSCSSSHHHHHHHHHHHHHTSSBCCHHHHHHH
T ss_pred CCC-CceeecCHHHHHHHHHHHHHHcCCCCCCchHhHhhccccccCCCCCCcchHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 787 899999999999999999999987 9999999999 999999999999999999999999999
Q ss_pred hcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHHHhhhC
Q 033029 66 YGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 128 (129)
Q Consensus 66 YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~~i~~~ 128 (129)
|||+||||++|+||++|||+|||+||||||++||||+++++||+|||+||++||+||.||+.+
T Consensus 80 YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~LD~iA~~v~~~ 142 (144)
T 3u5c_T 80 YGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRIAAQTLEE 142 (144)
T ss_dssp HCCEEEETTEEEEECCCCHHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCccccccCcHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999899999999999999999999764
No 2
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=100.00 E-value=4.5e-67 Score=400.97 Aligned_cols=125 Identities=36% Similarity=0.698 Sum_probs=121.8
Q ss_pred CCCcccccChhHHHHHHHHHHHhcCC--------------CCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhcc
Q 033029 3 TARTVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGG 68 (129)
Q Consensus 3 ~~~tv~DV~~~~fI~~~A~~LK~~gk--------------~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg 68 (129)
.|+||||||||+||++||+|||++|+ +||+||+||||||||||||||||||+||+||++|+++|||
T Consensus 6 ~m~tvkDV~a~~fI~~~A~~LKk~gki~~P~W~d~vKTg~~KElaP~d~DW~YiRaASi~R~lYlrg~vGV~~lrk~YGg 85 (155)
T 2xzm_T 6 SFFTVKDVAAADFIREYASHLKKANKLSIPEFTQWTTTSVARELAPQDSDWVYIRTAALARKVYLKPHTGISTLKHIFGS 85 (155)
T ss_dssp CCCCGGGSCHHHHHHHHHHHTTSSCCSCCCHHHHSCCCSSSCSSCCSSTTHHHHHHHHHHHHHHHSTTCCHHHHHHHTCC
T ss_pred CCceeeecCHHHHHHHHHHHHHhcCCCCCCchHhhhhccccccCCCCCCchHHHHHHHHHHHHhccCCCCHHHHHHHHCC
Confidence 48999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCC-----CceeCcchHhhHHHHHHHhhh
Q 033029 69 SKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG-----GRRITSSGQRDLDQVAGRIVV 127 (129)
Q Consensus 69 ~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~-----GR~lT~~G~~~lD~iA~~i~~ 127 (129)
+||||++|+||++|||+|||+||||||++||||+++++ ||+|||+||++||+||.||+.
T Consensus 86 ~krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~~LDriA~~i~~ 149 (155)
T 2xzm_T 86 NKDRGNLRNKHQACHGKILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMTELNRIATQIAI 149 (155)
T ss_dssp EECCSSSCCEECCCCHHHHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCCcHHHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877 999999999999999999975
No 3
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-67 Score=401.17 Aligned_cols=125 Identities=82% Similarity=1.362 Sum_probs=121.7
Q ss_pred CCcccccChhHHHHHHHHHHHhcCC--------------CCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhccc
Q 033029 4 ARTVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGS 69 (129)
Q Consensus 4 ~~tv~DV~~~~fI~~~A~~LK~~gk--------------~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~ 69 (129)
.+||||||||+||++||+|||++|| +||+||+||||||+|||||||||||+||+||++|+++|||+
T Consensus 6 ~~tvkDV~a~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~KEl~P~d~DW~Y~RaASi~R~lYlrg~vGV~~lrk~YGg~ 85 (146)
T 3iz6_S 6 ARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGR 85 (146)
T ss_dssp HHHHHHSCHHHHHHHHHTTGGGSSCCCCTTTGGGCCSSSSCSSSTHHHHTHHHHHHHHHHHHHHHCSBCHHHHHSSSCCC
T ss_pred CCeeeecCHHHHHHHHHHHHHHcCCCCCCchHHHhhccccccCCCCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHCCC
Confidence 3699999999999999999999987 99999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHHHhhhC
Q 033029 70 KRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 128 (129)
Q Consensus 70 k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~~i~~~ 128 (129)
||||++|+||++|||+|||+||||||++||||+++++||+|||+||++||+||.||+++
T Consensus 86 krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~LD~iA~~v~~~ 144 (146)
T 3iz6_S 86 QRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQVAGRVDVT 144 (146)
T ss_dssp CCCCSSCCCCCCCCHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcccCCCcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999899999999999999999999753
No 4
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=100.00 E-value=2.6e-46 Score=283.18 Aligned_cols=124 Identities=36% Similarity=0.605 Sum_probs=112.4
Q ss_pred CCcccccChhHHHHHHHHHHHhcCC--------------CCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhccc
Q 033029 4 ARTVKDVSPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGS 69 (129)
Q Consensus 4 ~~tv~DV~~~~fI~~~A~~LK~~gk--------------~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~ 69 (129)
|+||||||||+||++||+|||++|+ ++|++|+|+||||.|||++||++|++|+.|+..|++.|||+
T Consensus 1 m~tv~dv~~~~~i~~~a~~lk~~~ki~~P~w~~~vKt~~~ke~~p~~~~~~y~ria~~lr~~i~~g~~G~~~La~~~gg~ 80 (150)
T 2v7f_A 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGR 80 (150)
T ss_dssp -CCGGGSCHHHHHHHHHHHHTTCTTCCCCSCGGGCCC------CHHHHTHHHHHHHHHHHHHHHHCSBCHHHHHHHHCC-
T ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCCcchhhhhcccccccCCCCCcchHHHHHHHHHHHHHHhCCCCHHHHHHHHCCC
Confidence 6899999999999999999999986 99999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHHHhhh
Q 033029 70 KRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVV 127 (129)
Q Consensus 70 k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~~i~~ 127 (129)
||||++|+||+++|+++||.+||+||++|||++.+++|+.||+.|+++||+||.+|+.
T Consensus 81 k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~~~~l~~ia~~i~~ 138 (150)
T 2v7f_A 81 KNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELKK 138 (150)
T ss_dssp ---CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHHH
T ss_pred ccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCCCceEECCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888999999999999999999875
No 5
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=97.37 E-value=0.00052 Score=45.55 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=56.3
Q ss_pred HHhHHHHHHHHHHhC-CCchhhhHHHhcccCCCCCCCCcccCCchhH-HHHHHHHHHhCCceeecCCCCc----eeCcch
Q 033029 41 YVRAASMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAI-ARHILQQLQNMNIIDIEPKGGR----RITSSG 114 (129)
Q Consensus 41 Y~R~ASilR~lYl~g-~vGV~~lr~~YGg~k~rG~~P~h~~~asg~i-iR~~lqqLE~~g~vek~~~~GR----~lT~~G 114 (129)
.+|+..+|..++-.+ ++.+..|++..|- +.+- +-.+++.||+.|||+.++.++| .||++|
T Consensus 14 ~~~~l~~L~~l~~~~~~~t~~eLa~~l~i--------------s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G 79 (95)
T 2pg4_A 14 LIRILPTLLEFEKKGYEPSLAEIVKASGV--------------SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKG 79 (95)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHCC--------------CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHCC--------------CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhH
Confidence 457777888888888 8999999998773 2345 6778999999999996654444 699999
Q ss_pred HhhHHHHHHHh
Q 033029 115 QRDLDQVAGRI 125 (129)
Q Consensus 115 ~~~lD~iA~~i 125 (129)
+..++.+....
T Consensus 80 ~~~~~~~~~~~ 90 (95)
T 2pg4_A 80 RRLAECLEKCR 90 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 6
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=97.36 E-value=0.00052 Score=47.04 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHH
Q 033029 44 AASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 123 (129)
Q Consensus 44 ~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~ 123 (129)
...||+.++ .+ +|...|...-|= |-+.+|..+..||+.|||++.. +|-.||++|+..|+.+..
T Consensus 10 i~~IL~~i~-~~-~~~t~La~~~~l--------------s~~~~~~~l~~L~~~GLI~~~~-~~~~LT~kG~~~l~~l~~ 72 (95)
T 1r7j_A 10 IQAILEACK-SG-SPKTRIMYGANL--------------SYALTGRYIKMLMDLEIIRQEG-KQYMLTKKGEELLEDIRK 72 (95)
T ss_dssp HHHHHHHHT-TC-BCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cC-CCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCeEEEC-CeeEEChhHHHHHHHHHH
Confidence 356888887 45 888888887543 3469999999999999999984 689999999987776543
No 7
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=97.10 E-value=0.0025 Score=44.39 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 123 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~ 123 (129)
|++-+.-.+++.+..|+...|- |.+-++.+|+.||+.|||+..+.++-.||++|+..+..+..
T Consensus 13 i~~l~~~~~~~~~~ela~~l~v--------------s~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~~~~~~~ 75 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAV--------------HPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRLVY 75 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHHHHHHHH
Confidence 4444445689999999998864 34678999999999999998876778999999999887654
No 8
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=97.10 E-value=0.002 Score=45.70 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 123 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~ 123 (129)
|+..|+-.+++.+..|...+|- |.+-++.+|+.||+.|||+..++.|-.||+.|+..+..+..
T Consensus 45 i~~~l~~~~~~~~~~la~~l~v--------------s~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~~~ 107 (155)
T 2h09_A 45 ISDLIREVGEARQVDMAARLGV--------------SQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRE 107 (155)
T ss_dssp HHHHHHHHSCCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHHHH
Confidence 3334455688999999998865 34689999999999999998877788999999998887654
No 9
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.09 E-value=0.0025 Score=43.96 Aligned_cols=66 Identities=8% Similarity=0.101 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|....|-. .+-+-.+++.||+.|||+..+ ..+| .||++|+..++
T Consensus 35 ~iL~~l~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 100 (145)
T 3g3z_A 35 AVLYTLATEGSRTQKHIGEKWSLP--------------KQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA 100 (145)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence 488888999999999999987642 346778999999999999754 3455 49999999998
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 101 ~~~~~~ 106 (145)
T 3g3z_A 101 PLTESA 106 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876553
No 10
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=97.03 E-value=0.0025 Score=43.67 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+ .+++.+..|+...|- +.+-+..+++.||+.|||+... .++| .||++|+..++
T Consensus 41 ~iL~~l~-~~~~~~~ela~~l~~--------------s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 105 (146)
T 2gxg_A 41 LVLRATS-DGPKTMAYLANRYFV--------------TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFN 105 (146)
T ss_dssp HHHHHHT-TSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred HHHHHHh-cCCcCHHHHHHHhCC--------------CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHH
Confidence 3777788 999999999998753 3457888999999999998654 2343 68999999998
Q ss_pred HHHHH
Q 033029 120 QVAGR 124 (129)
Q Consensus 120 ~iA~~ 124 (129)
.+...
T Consensus 106 ~~~~~ 110 (146)
T 2gxg_A 106 KGIEI 110 (146)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 11
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=96.98 E-value=0.0027 Score=43.71 Aligned_cols=65 Identities=12% Similarity=0.155 Sum_probs=51.4
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD~ 120 (129)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.+ ..+| .||++|+..++.
T Consensus 42 iL~~l~~~~~~t~~eLa~~l~~--------------~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 107 (143)
T 3oop_A 42 VLEGIEANEPISQKEIALWTKK--------------DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTE 107 (143)
T ss_dssp HHHHHHHHSSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCC--------------CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHH
Confidence 7778888899999999998753 2356778999999999999754 3444 499999999998
Q ss_pred HHHHh
Q 033029 121 VAGRI 125 (129)
Q Consensus 121 iA~~i 125 (129)
+...+
T Consensus 108 ~~~~~ 112 (143)
T 3oop_A 108 LRDIV 112 (143)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 12
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=96.95 E-value=0.0038 Score=43.24 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=46.7
Q ss_pred hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHH
Q 033029 54 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 123 (129)
Q Consensus 54 ~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~ 123 (129)
.+++.+..|+...|- +.+-++.+|+.||+.|||+..+ ++-.||++|+...+.+..
T Consensus 29 ~~~~s~~ela~~l~i--------------s~~tv~~~l~~Le~~Gli~r~~-~~~~Lt~~g~~~~~~~~~ 83 (139)
T 2x4h_A 29 GEGAKINRIAKDLKI--------------APSSVFEEVSHLEEKGLVKKKE-DGVWITNNGTRSINYLIK 83 (139)
T ss_dssp TSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCC--------------ChHHHHHHHHHHHHCCCEEecC-CeEEEChhHHHHHHHHHH
Confidence 578999999998763 3468899999999999999887 688999999998876654
No 13
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.92 E-value=0.0034 Score=43.26 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.++.|....|-. | +-+-.+++.||+.|||++.++ .+| .||++|+..++
T Consensus 41 ~vL~~l~~~~~~t~~eLa~~l~~~------~--------~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 106 (142)
T 3ech_A 41 HVLKLIDEQRGLNLQDLGRQMCRD------K--------ALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL 106 (142)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHC-----------------CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHhCCC------H--------HHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence 378888889999999999988643 2 367789999999999997542 344 59999999999
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 107 ~~~~~~ 112 (142)
T 3ech_A 107 HAELIM 112 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 14
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.90 E-value=0.0056 Score=41.62 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||+... +++| .||++|+..++
T Consensus 38 ~iL~~l~~~~~~~~~~la~~l~~--------------~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~ 103 (138)
T 1jgs_A 38 KVLCSIRCAACITPVELKKVLSV--------------DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE 103 (138)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHCC--------------ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence 36777788899999999987653 2346778999999999998743 3444 59999999998
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 104 ~~~~~~ 109 (138)
T 1jgs_A 104 QCHQLV 109 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 15
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=96.89 E-value=0.0026 Score=44.04 Aligned_cols=65 Identities=8% Similarity=0.101 Sum_probs=51.2
Q ss_pred HHHHHHHh--CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhH
Q 033029 47 MARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~--g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~l 118 (129)
||..|+-+ +++.+..|+...|- +.+-+-.+++.||+.|||++.+ ..+| .||++|+..+
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNY--------------KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSS--------------HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHhccCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 77778888 88999999998663 2345667899999999998743 3455 6999999999
Q ss_pred HHHHHHh
Q 033029 119 DQVAGRI 125 (129)
Q Consensus 119 D~iA~~i 125 (129)
+++...+
T Consensus 108 ~~~~~~~ 114 (127)
T 2frh_A 108 ESLLSRV 114 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876654
No 16
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.86 E-value=0.0041 Score=40.39 Aligned_cols=85 Identities=16% Similarity=0.184 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHH
Q 033029 15 FVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQL 94 (129)
Q Consensus 15 fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqL 94 (129)
.+..+.+.|+.-| + ++ .-..|+..|.-.+++.+..|....|- +.+-+..+|+.|
T Consensus 5 ~~~~~~~~l~~~~----l---~~-----~~~~il~~l~~~~~~s~~ela~~l~i--------------s~~tv~~~l~~L 58 (109)
T 1sfx_A 5 PLGELVKALEKLS----F---KP-----SDVRIYSLLLERGGMRVSEIARELDL--------------SARFVRDRLKVL 58 (109)
T ss_dssp HHHHHHHHHHHTC----C---CH-----HHHHHHHHHHHHCCBCHHHHHHHHTC--------------CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcC----C---CH-----HHHHHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHH
Confidence 4566777777543 1 11 11347777777899999999998853 446899999999
Q ss_pred HhCCceeecCC-CCc----eeCcchHhhHHHHHHHh
Q 033029 95 QNMNIIDIEPK-GGR----RITSSGQRDLDQVAGRI 125 (129)
Q Consensus 95 E~~g~vek~~~-~GR----~lT~~G~~~lD~iA~~i 125 (129)
|+.|+|+.... ++| .+|+.|+..++.+...+
T Consensus 59 ~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~~~~ 94 (109)
T 1sfx_A 59 LKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSSI 94 (109)
T ss_dssp HHTTSEEEEEEESSSEEEEEEECCHHHHHHHHHHHH
T ss_pred HHCCCEEEEeecCCceEEEEecCcHHHHHHHHHHHH
Confidence 99999987542 455 69999999988776543
No 17
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=96.81 E-value=0.0038 Score=43.37 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=50.7
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceee--cC--CCCc----eeCcchHhhH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI--EP--KGGR----RITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek--~~--~~GR----~lT~~G~~~l 118 (129)
||..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||+. .+ ..+| .||++|+..+
T Consensus 46 iL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 46 MINVIYSTPGISVADLTKRLII--------------TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 7777888899999999998863 23467789999999999998 33 3344 5999999999
Q ss_pred HHHHHH
Q 033029 119 DQVAGR 124 (129)
Q Consensus 119 D~iA~~ 124 (129)
+++...
T Consensus 112 ~~~~~~ 117 (154)
T 2qww_A 112 KRSTAN 117 (154)
T ss_dssp HHHHSC
T ss_pred HHHHhh
Confidence 887544
No 18
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=96.81 E-value=0.0051 Score=41.99 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=51.0
Q ss_pred HHHHHHHHhC--CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhh
Q 033029 46 SMARKIYLRQ--GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRD 117 (129)
Q Consensus 46 SilR~lYl~g--~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~ 117 (129)
.||..|+-.+ ++.+..|+...|- +.+-+-.+++.||+.|||++.+ .++| .||++|+..
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~ 100 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQR--------------TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKL 100 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCC--------------CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHH
Confidence 3788888887 9999999998764 2346778999999999998653 3455 499999999
Q ss_pred HHHHHHHh
Q 033029 118 LDQVAGRI 125 (129)
Q Consensus 118 lD~iA~~i 125 (129)
++.+...+
T Consensus 101 ~~~~~~~~ 108 (139)
T 3eco_A 101 VEAFTSIF 108 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
No 19
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=96.81 E-value=0.0044 Score=41.96 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=50.3
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD~ 120 (129)
|+..|+-.+++.+..|....|-. .+-+-.+++.||+.|||+... ..+| .||++|+..++.
T Consensus 38 iL~~l~~~~~~~~~ela~~l~~~--------------~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~ 103 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIENMGCV--------------PSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQ 103 (139)
T ss_dssp HHHHHHHSCSEEHHHHHHHCSSC--------------CTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHH
Confidence 77777888999999999987532 235677899999999998743 3344 599999999988
Q ss_pred HHHHh
Q 033029 121 VAGRI 125 (129)
Q Consensus 121 iA~~i 125 (129)
+...+
T Consensus 104 ~~~~~ 108 (139)
T 3bja_A 104 VDVQY 108 (139)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 20
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.80 E-value=0.0057 Score=42.01 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=51.5
Q ss_pred HHHHHHHHH-hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhh
Q 033029 45 ASMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRD 117 (129)
Q Consensus 45 ASilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~ 117 (129)
..||..|+- .+++.+..|....|- +.+-+..+++.||+.|||++.++ .+| .||++|+..
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i--------------~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~ 103 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERM--------------RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRN 103 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCC--------------ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHH
Confidence 458888888 899999999998753 33578889999999999997642 344 599999999
Q ss_pred HHHHHHH
Q 033029 118 LDQVAGR 124 (129)
Q Consensus 118 lD~iA~~ 124 (129)
++.+...
T Consensus 104 ~~~~~~~ 110 (147)
T 2hr3_A 104 LYGNRAK 110 (147)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 21
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=96.76 E-value=0.0059 Score=43.65 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD~ 120 (129)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.. .++| .||++|+..+++
T Consensus 50 iL~~L~~~~~~t~~eLa~~l~i--------------s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~ 115 (168)
T 2nyx_A 50 TLVILSNHGPINLATLATLLGV--------------QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQ 115 (168)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence 6777888899999999998753 3346777999999999998743 3344 599999999988
Q ss_pred HHHHh
Q 033029 121 VAGRI 125 (129)
Q Consensus 121 iA~~i 125 (129)
+...+
T Consensus 116 ~~~~~ 120 (168)
T 2nyx_A 116 VTEHR 120 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 22
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=96.75 E-value=0.0075 Score=41.00 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=50.5
Q ss_pred HHHHHHHhC--CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhH
Q 033029 47 MARKIYLRQ--GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~g--~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~l 118 (129)
||..|+-.+ ++.+..|+...|- +.+-+..+++.||+.|||+..+ +++| .||++|+..+
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~--------------~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSI--------------KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC--------------CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 777788887 8999999998864 2357888999999999998654 2333 3899999998
Q ss_pred HHHHHH
Q 033029 119 DQVAGR 124 (129)
Q Consensus 119 D~iA~~ 124 (129)
+.+...
T Consensus 105 ~~~~~~ 110 (141)
T 3bro_A 105 TIILSY 110 (141)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877554
No 23
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.72 E-value=0.0058 Score=41.41 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|+...|- +.+-+..+++.||+.|||+..+ .++| .||++|+..++
T Consensus 33 ~iL~~l~~~~~~~~~ela~~l~~--------------s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~ 98 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHV--------------DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP 98 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence 37777888899999999998753 3457888999999999999754 2233 59999999998
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 99 ~~~~~~ 104 (138)
T 3bpv_A 99 LILKVE 104 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 24
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=96.72 E-value=0.0042 Score=43.34 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD~ 120 (129)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.+ ..+| .||++|+..++.
T Consensus 46 iL~~l~~~~~~~~~eLa~~l~~--------------~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 111 (149)
T 4hbl_A 46 VMLTLWEENPQTLNSIGRHLDL--------------SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEA 111 (149)
T ss_dssp HHHHHHHSSSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHH
Confidence 7777888899999999998764 2356778999999999999754 3455 499999999998
Q ss_pred HHHHh
Q 033029 121 VAGRI 125 (129)
Q Consensus 121 iA~~i 125 (129)
+...+
T Consensus 112 ~~~~~ 116 (149)
T 4hbl_A 112 VFEAI 116 (149)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 25
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=96.65 E-value=0.006 Score=43.11 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-++++.+..|....|- +.+-+-.+++.||+.|||++.. ..+| .||++|+..++
T Consensus 57 ~vL~~l~~~~~~t~~eLa~~l~~--------------~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~ 122 (161)
T 3e6m_A 57 RLLSSLSAYGELTVGQLATLGVM--------------EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA 122 (161)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence 37788888899999999997653 2356778999999999999765 2344 59999999999
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 123 ~~~~~~ 128 (161)
T 3e6m_A 123 EISPLI 128 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876643
No 26
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.64 E-value=0.0074 Score=42.40 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=50.8
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD~ 120 (129)
||..|+-.+++.+..|....|-. .+-+-.+++.||+.|||++.+ ..+| .||++|+..++.
T Consensus 55 vL~~l~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~ 120 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDYLKID--------------KGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPD 120 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHH
Confidence 77778888999999999987642 357778999999999998654 3444 499999999998
Q ss_pred HHHHh
Q 033029 121 VAGRI 125 (129)
Q Consensus 121 iA~~i 125 (129)
+...+
T Consensus 121 ~~~~~ 125 (159)
T 3s2w_A 121 MKKIA 125 (159)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 27
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.63 E-value=0.0076 Score=42.59 Aligned_cols=66 Identities=23% Similarity=0.227 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-+|++.+..|....|-. .+-+-.+++.||+.|||++.. ..+| .||++|+..++
T Consensus 50 ~iL~~l~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~ 115 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSFIK--------------PQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN 115 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSC--------------GGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence 378888889999999999988642 235678999999999998654 3444 59999999999
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
++...+
T Consensus 116 ~~~~~~ 121 (162)
T 3k0l_A 116 QCNQVV 121 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876643
No 28
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.63 E-value=0.013 Score=40.03 Aligned_cols=92 Identities=9% Similarity=0.042 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHhcCC------CCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhH
Q 033029 13 HEFVKAYSAHLKRSGK------FKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAI 86 (129)
Q Consensus 13 ~~fI~~~A~~LK~~gk------~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~i 86 (129)
+++-+.+...|..... .+.+.+.+=+. .-..||..|+-.+ +.+..|+...|- +.+-
T Consensus 6 ~el~~~l~~ll~~~~~~~~~~~~~~~~~~~lt~---~~~~iL~~l~~~~-~t~~eLa~~l~~--------------s~~t 67 (146)
T 3tgn_A 6 KDINAFLNEVILQAENQHEILIGHCTSEVALTN---TQEHILMLLSEES-LTNSELARRLNV--------------SQAA 67 (146)
T ss_dssp HHHHHHHHHHHHHTTTCSSCCSSCCCCSSCCCH---HHHHHHHHHTTCC-CCHHHHHHHHTC--------------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCH---HHHHHHHHHHhCC-CCHHHHHHHHCC--------------CHHH
Confidence 4444555555555433 44444443221 1123778888777 999999999864 3467
Q ss_pred HHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHHHHH
Q 033029 87 ARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLDQVA 122 (129)
Q Consensus 87 iR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD~iA 122 (129)
+..+++.||+.|||++.+ ..+| .||++|+..+..+.
T Consensus 68 vs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 68 VTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 899999999999998755 2344 49999999999886
No 29
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.62 E-value=0.0057 Score=40.36 Aligned_cols=70 Identities=11% Similarity=0.044 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCC---CceeCcchHhhHHHHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG---GRRITSSGQRDLDQVA 122 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~---GR~lT~~G~~~lD~iA 122 (129)
.||..|+-.+++.+..|.+.... . ..-+.+-+-.+|+.||+.|||++..+. .-.||++|+..++.+.
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~--~--------l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~ 81 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNA--E--------FPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK 81 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHT--T--------SCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHHH--H--------cCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence 36777777888999888322211 1 112345778899999999999875432 3359999999998876
Q ss_pred HHh
Q 033029 123 GRI 125 (129)
Q Consensus 123 ~~i 125 (129)
..+
T Consensus 82 ~~~ 84 (99)
T 1tbx_A 82 TAI 84 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 30
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.62 E-value=0.0037 Score=42.45 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD 119 (129)
.||..|+ .|+..++.|....+| -+.+.+-..|+.||+.|||+.... .+| .||++|+..++
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~g-------------is~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 94 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIPG-------------ISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP 94 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHSTT-------------CCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred HHHHHHH-hCCcCHHHHHHHccc-------------CCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence 3778887 899999999987641 245688999999999999986542 233 79999999877
Q ss_pred HHH
Q 033029 120 QVA 122 (129)
Q Consensus 120 ~iA 122 (129)
.+.
T Consensus 95 ~l~ 97 (107)
T 2fsw_A 95 IID 97 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 31
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.61 E-value=0.009 Score=41.49 Aligned_cols=63 Identities=14% Similarity=0.284 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceee----cCCCCc----eeCcchHhhH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI----EPKGGR----RITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek----~~~~GR----~lT~~G~~~l 118 (129)
||..| -.+++.+..|+...|-. .+-+-.+++.||+.|||+. ++..+| .||++|+..+
T Consensus 43 iL~~l-~~~~~t~~eLa~~l~~~--------------~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 43 VLNML-SIEALTVGQITEKQGVN--------------KAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHH-HHSCBCHHHHHHHHCSC--------------SSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHH-HcCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 66777 78999999999987643 2367789999999999996 444555 5999999999
Q ss_pred HHHHHH
Q 033029 119 DQVAGR 124 (129)
Q Consensus 119 D~iA~~ 124 (129)
+.+...
T Consensus 108 ~~~~~~ 113 (151)
T 3kp7_A 108 KERKAI 113 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 32
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=96.59 E-value=0.0042 Score=42.94 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-++++.+..|+...|- +.+-+-.+++.||+.|||++.+ ..+| .||++|+..++
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l~~--------------~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 105 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFL--------------DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS 105 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCC--------------ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence 47788888899999999998763 3457778999999999999765 3344 58999999999
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+....
T Consensus 106 ~~~~~~ 111 (140)
T 3hsr_A 106 PLAEIS 111 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 33
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.59 E-value=0.0069 Score=39.27 Aligned_cols=66 Identities=8% Similarity=0.103 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCC----ceeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGG----RRITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~G----R~lT~~G~~~lD 119 (129)
.|+..|+-+++..+..|....|- |.+-+-..|+.||+.|+|+... ..| -.||++|...+.
T Consensus 20 ~iL~~L~~~~~~~~~ela~~l~i--------------s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~ 85 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKVLDL--------------TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAK 85 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHhcCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHH
Confidence 47888887899999999998752 3457888999999999998543 123 358999998888
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 86 ~~~~~~ 91 (100)
T 1ub9_A 86 RFLSSL 91 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 34
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.58 E-value=0.0044 Score=41.14 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=50.2
Q ss_pred hHHHHHHHHHH-hCC---CchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCc----eeCcch
Q 033029 43 RAASMARKIYL-RQG---LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSG 114 (129)
Q Consensus 43 R~ASilR~lYl-~g~---vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR----~lT~~G 114 (129)
++..+|-.|+- .++ +.+..|+...|- +.+-+-.+|+.||+.|||. ++..+| .||++|
T Consensus 13 ~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i--------------~~~tvs~~l~~Le~~Glv~-~~~d~R~~~v~LT~~G 77 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDVYIQYIASKVNS--------------PHSYVWLIIKKFEEAKMVE-CELEGRTKIIRLTDKG 77 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCEEHHHHHHHSSS--------------CHHHHHHHHHHHHHTTSEE-EEEETTEEEEEECHHH
T ss_pred hHHHHHHHHHHccCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCcCcc-CCCCCCeEEEEEChhH
Confidence 44456666654 345 889999998654 2346777899999999994 444466 799999
Q ss_pred HhhHHHHHHHh
Q 033029 115 QRDLDQVAGRI 125 (129)
Q Consensus 115 ~~~lD~iA~~i 125 (129)
+..++++...+
T Consensus 78 ~~~~~~~~~~~ 88 (95)
T 2qvo_A 78 QKIAQQIKSII 88 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 35
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.57 E-value=0.01 Score=40.83 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CC----CceeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KG----GRRITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~----GR~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.+ .. .-.||++|+..++
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~ 109 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILGL--------------DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE 109 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence 37888888999999999998763 2357788999999999999764 22 3469999999999
Q ss_pred HHHHH
Q 033029 120 QVAGR 124 (129)
Q Consensus 120 ~iA~~ 124 (129)
.+...
T Consensus 110 ~~~~~ 114 (148)
T 3nrv_A 110 VASDF 114 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 36
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.56 E-value=0.024 Score=38.69 Aligned_cols=65 Identities=9% Similarity=0.101 Sum_probs=51.5
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD~ 120 (129)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||+... .++| .||++|+..++.
T Consensus 34 iL~~l~~~~~~t~~~la~~l~~--------------s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 99 (144)
T 1lj9_A 34 YLVRVCENPGIIQEKIAELIKV--------------DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPI 99 (144)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHCcCcCHHHHHHHHCC--------------CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHH
Confidence 6777888899999999998763 3457788999999999998754 2344 599999999988
Q ss_pred HHHHh
Q 033029 121 VAGRI 125 (129)
Q Consensus 121 iA~~i 125 (129)
+...+
T Consensus 100 ~~~~~ 104 (144)
T 1lj9_A 100 IVREN 104 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 37
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.55 E-value=0.0086 Score=40.52 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||+..+ .++| .||++|+..++
T Consensus 42 ~iL~~l~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (140)
T 2nnn_A 42 AALVRLGETGPCPQNQLGRLTAM--------------DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELE 107 (140)
T ss_dssp HHHHHHHHHSSBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHH
Confidence 37888888899999999998753 3356788999999999999753 2233 59999999998
Q ss_pred HHHHH
Q 033029 120 QVAGR 124 (129)
Q Consensus 120 ~iA~~ 124 (129)
.+...
T Consensus 108 ~~~~~ 112 (140)
T 2nnn_A 108 AGLAA 112 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87554
No 38
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.55 E-value=0.012 Score=41.02 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-++++.+..|....|- +.+-+-.+++.||+.|||+... ..+| .||++|+..++
T Consensus 48 ~iL~~l~~~~~~t~~ela~~l~i--------------s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 113 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFLST--------------TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG 113 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTTS--------------CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence 47788888899999999998753 3346778999999999998743 3344 58999999998
Q ss_pred HHHHH
Q 033029 120 QVAGR 124 (129)
Q Consensus 120 ~iA~~ 124 (129)
.+...
T Consensus 114 ~~~~~ 118 (154)
T 2eth_A 114 EILSN 118 (154)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 39
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.54 E-value=0.0083 Score=40.10 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCc----eeCcchHhhHHHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQRDLDQV 121 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR----~lT~~G~~~lD~i 121 (129)
.|+..| .+|++.+..|....| -|.+-+...|+.||+.|+|+...+ || .||++|...+...
T Consensus 25 ~IL~~L-~~~~~~~~ela~~l~--------------is~~tv~~~l~~L~~~gli~~~~~-gr~~~y~l~~~~~~~~~~~ 88 (114)
T 2oqg_A 25 EILTEL-GRADQSASSLATRLP--------------VSRQAIAKHLNALQACGLVESVKV-GREIRYRALGAELNKTART 88 (114)
T ss_dssp HHHHHH-HHSCBCHHHHHHHSS--------------SCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECSHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeeEEec-CCEEEEEechHHHHHHHHH
Confidence 488877 789999999999875 244689999999999999987654 55 7999998777655
Q ss_pred HHH
Q 033029 122 AGR 124 (129)
Q Consensus 122 A~~ 124 (129)
...
T Consensus 89 ~~~ 91 (114)
T 2oqg_A 89 LER 91 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 40
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=96.54 E-value=0.0049 Score=42.23 Aligned_cols=64 Identities=9% Similarity=0.160 Sum_probs=50.1
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD~ 120 (129)
|+..|+-.+++.+..|+...|-. .+-+..+++.||+.|||+..++ ++| .||++|+..++.
T Consensus 42 iL~~l~~~~~~~~~ela~~l~~~--------------~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (142)
T 2bv6_A 42 VLTILWDESPVNVKKVVTELALD--------------TGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPE 107 (142)
T ss_dssp HHHHHHHSSEEEHHHHHHHTTCC--------------TTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC--------------hhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHH
Confidence 77778888999999999988642 2357789999999999987542 344 579999999988
Q ss_pred HHHH
Q 033029 121 VAGR 124 (129)
Q Consensus 121 iA~~ 124 (129)
+...
T Consensus 108 ~~~~ 111 (142)
T 2bv6_A 108 LSNA 111 (142)
T ss_dssp HTTH
T ss_pred HHHH
Confidence 7543
No 41
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=96.53 E-value=0.012 Score=41.17 Aligned_cols=64 Identities=13% Similarity=0.119 Sum_probs=48.6
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCC----ceeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGG----RRITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~G----R~lT~~G~~~lD~ 120 (129)
||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.. ..+ -.||++|+..++.
T Consensus 54 iL~~l~~~~~~t~~ela~~l~i--------------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 119 (162)
T 2fa5_A 54 VITILALYPGSSASEVSDRTAM--------------DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYET 119 (162)
T ss_dssp HHHHHHHSTTCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHH
Confidence 7777777899999999998763 3357888999999999998754 223 3599999999987
Q ss_pred HHHH
Q 033029 121 VAGR 124 (129)
Q Consensus 121 iA~~ 124 (129)
+...
T Consensus 120 ~~~~ 123 (162)
T 2fa5_A 120 VAPL 123 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 42
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=96.52 E-value=0.012 Score=40.44 Aligned_cols=65 Identities=12% Similarity=0.209 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD~ 120 (129)
||..|+-.+++.+..|....|- +.+-+-.+|+.||+.|||+... ..+| .||++|+..++.
T Consensus 47 iL~~l~~~~~~t~~ela~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 112 (150)
T 2rdp_A 47 ALQWLLEEGDLTVGELSNKMYL--------------ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEE 112 (150)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCC--------------CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHH
Confidence 7777888899999999998753 3356778999999999998753 2344 599999999988
Q ss_pred HHHHh
Q 033029 121 VAGRI 125 (129)
Q Consensus 121 iA~~i 125 (129)
+...+
T Consensus 113 ~~~~~ 117 (150)
T 2rdp_A 113 VIEKR 117 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 43
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=96.51 E-value=0.0052 Score=42.61 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=45.8
Q ss_pred HHHHHHHHh--CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCce----eCcchHhh
Q 033029 46 SMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRR----ITSSGQRD 117 (129)
Q Consensus 46 SilR~lYl~--g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR~----lT~~G~~~ 117 (129)
.||..|+-. +++.+..|+...|-. | +-+-.+++.||+.|||++.. ..+|. ||++|+..
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~~------~--------~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~ 110 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGRR------G--------ASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAAL 110 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC--------------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCCC------h--------hHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHH
Confidence 377788887 899999999976532 2 24668999999999998754 34553 99999999
Q ss_pred HHHHHHHh
Q 033029 118 LDQVAGRI 125 (129)
Q Consensus 118 lD~iA~~i 125 (129)
++.+...+
T Consensus 111 ~~~~~~~~ 118 (148)
T 3jw4_A 111 VEEFNNIF 118 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876553
No 44
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.50 E-value=0.0097 Score=38.59 Aligned_cols=65 Identities=15% Similarity=0.231 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCc----eeCcchHhhHHHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQRDLDQV 121 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR----~lT~~G~~~lD~i 121 (129)
.|+..|.-.+++.+..|....|- |.+-+.+.|+.||+.|+|+...+ || .||++|...+-..
T Consensus 28 ~il~~l~~~~~~s~~ela~~l~i--------------s~~tvs~~l~~L~~~glv~~~~~-~r~~~y~l~~~~~~~l~~~ 92 (99)
T 3cuo_A 28 LILCMLSGSPGTSAGELTRITGL--------------SASATSQHLARMRDEGLIDSQRD-AQRILYSIKNEAVNAIIAT 92 (99)
T ss_dssp HHHHHHTTCCSEEHHHHHHHHCC--------------CHHHHHHHHHHHHHTTSEEEEEC-SSCEEEEECCHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEec-CCEEEEEEChHHHHHHHHH
Confidence 47777766679999999998863 34689999999999999998764 44 6899997776666
Q ss_pred HHHh
Q 033029 122 AGRI 125 (129)
Q Consensus 122 A~~i 125 (129)
..++
T Consensus 93 l~~~ 96 (99)
T 3cuo_A 93 LKNV 96 (99)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 45
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.46 E-value=0.015 Score=39.59 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=49.7
Q ss_pred HHHHH-HHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHH
Q 033029 47 MARKI-YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLD 119 (129)
Q Consensus 47 ilR~l-Yl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD 119 (129)
||..| +-.+++.+..|....|- +.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 42 iL~~l~~~~~~~t~~~la~~l~~--------------s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 107 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQSVGV--------------EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA 107 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHhCC--------------ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHH
Confidence 66777 45789999999998753 33578889999999999997542 333 68999999998
Q ss_pred HHHHH
Q 033029 120 QVAGR 124 (129)
Q Consensus 120 ~iA~~ 124 (129)
.+...
T Consensus 108 ~~~~~ 112 (146)
T 2fbh_A 108 DIEAI 112 (146)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87544
No 46
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.44 E-value=0.0093 Score=40.43 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|+...|- +.+-+..+++.||+.|||+..+ ..+| .||++|+..++
T Consensus 40 ~iL~~l~~~~~~t~~ela~~l~~--------------s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQLANQACI--------------LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 105 (142)
T ss_dssp HHHHHHHHHCSEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence 37788888899999999998653 3357888999999999998753 3344 49999999998
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 106 ~~~~~~ 111 (142)
T 2fbi_A 106 SMSGDM 111 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 47
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.44 E-value=0.0095 Score=40.48 Aligned_cols=63 Identities=8% Similarity=0.081 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CC----ceeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GG----RRITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~G----R~lT~~G~~~lD 119 (129)
.||+.|+ +|+..+..|..... .-|.+.+-..|+.||+.|||++... .+ -.||++|++.++
T Consensus 18 ~IL~~L~-~~~~~~~eLa~~l~-------------~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~ 83 (107)
T 2hzt_A 18 VILXHLT-HGKKRTSELKRLMP-------------NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 83 (107)
T ss_dssp HHHHHHT-TCCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-------------CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHHH
Confidence 3777787 89999999998751 2355788999999999999986542 23 479999999877
Q ss_pred HHH
Q 033029 120 QVA 122 (129)
Q Consensus 120 ~iA 122 (129)
.+.
T Consensus 84 ~~~ 86 (107)
T 2hzt_A 84 ILD 86 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 48
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=96.44 E-value=0.011 Score=40.71 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=51.2
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD~ 120 (129)
||..|+-.+++.+..|+...|- +.+-+..+|+.||+.|||+...+ ++| .||++|+..++.
T Consensus 45 iL~~l~~~~~~t~~ela~~l~~--------------~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 110 (152)
T 3bj6_A 45 ILEGLSLTPGATAPQLGAALQM--------------KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITA 110 (152)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHH
Confidence 7777888899999999998864 23578889999999999997542 233 589999999887
Q ss_pred HHHH
Q 033029 121 VAGR 124 (129)
Q Consensus 121 iA~~ 124 (129)
+...
T Consensus 111 ~~~~ 114 (152)
T 3bj6_A 111 IRAD 114 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 49
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.43 E-value=0.01 Score=40.45 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||+..+ .++| .||++|+..++
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l~~--------------s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~ 102 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLLGV--------------AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE 102 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence 37777888899999999998753 3357888999999999998754 2333 69999999998
Q ss_pred HHHHH
Q 033029 120 QVAGR 124 (129)
Q Consensus 120 ~iA~~ 124 (129)
.+...
T Consensus 103 ~~~~~ 107 (145)
T 2a61_A 103 KVIER 107 (145)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 50
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=96.41 E-value=0.01 Score=41.54 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=50.6
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD~ 120 (129)
||..|+-.+++.+..|....|- +.+-+..+|+.||+.|||+... .++| .||++|+..++.
T Consensus 57 iL~~l~~~~~~t~~ela~~l~i--------------s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~ 122 (162)
T 3cjn_A 57 ALAILSAKDGLPIGTLGIFAVV--------------EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDR 122 (162)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCC--------------ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence 7777888899999999998753 2357888999999999998753 2333 599999999988
Q ss_pred HHHH
Q 033029 121 VAGR 124 (129)
Q Consensus 121 iA~~ 124 (129)
+...
T Consensus 123 ~~~~ 126 (162)
T 3cjn_A 123 LWPH 126 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7554
No 51
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=96.40 E-value=0.012 Score=48.40 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=52.3
Q ss_pred hHHHHHH-----HHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCC-CceeCcch-H
Q 033029 43 RAASMAR-----KIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG-GRRITSSG-Q 115 (129)
Q Consensus 43 R~ASilR-----~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~-GR~lT~~G-~ 115 (129)
|-..||+ .|--.+|||+..|.+.|+= .-|-.-||+-|..||++|++++...+ ||.-|.+| +
T Consensus 18 R~~~IL~~i~~~yl~~~~pV~s~~La~~~~l------------~VS~aTIRrDL~~LE~~GlL~r~HgsAgript~~g~r 85 (338)
T 1stz_A 18 RQRKVLYCIVREYIENKKPVSSQRVLEVSNI------------EFSSATIRNDMKKLEYLGYIYQPHTSAGRIPTDKGLR 85 (338)
T ss_dssp HHHHHHHHHHHHHHHHCSCBCHHHHHHHSCC------------CSCHHHHHHHHHHHHHTTSEECCSSCSCBEECHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHhCC------------CCCHHHHHHHHHHHHHCCCEEEccCcceecCCcccch
Confidence 6677887 4444689999999998852 23557999999999999999986643 68889888 4
Q ss_pred hhHHHHH
Q 033029 116 RDLDQVA 122 (129)
Q Consensus 116 ~~lD~iA 122 (129)
...|++.
T Consensus 86 ~yvd~l~ 92 (338)
T 1stz_A 86 FYYEEML 92 (338)
T ss_dssp HHHHHHH
T ss_pred hhhhhhh
Confidence 4566554
No 52
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.32 E-value=0.0076 Score=41.29 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CC----ceeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GG----RRITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~G----R~lT~~G~~~lD 119 (129)
.||..|+ +|++.++.|..... .-+.+.+-..|+.||+.|||+.... .+ -.||++|+..++
T Consensus 26 ~IL~~L~-~~~~~~~eLa~~l~-------------~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~ 91 (112)
T 1z7u_A 26 SLMDELF-QGTKRNGELMRALD-------------GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD 91 (112)
T ss_dssp HHHHHHH-HSCBCHHHHHHHST-------------TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhc-------------cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHH
Confidence 4788887 69999999999862 2345688899999999999986542 23 378999998777
Q ss_pred HHH
Q 033029 120 QVA 122 (129)
Q Consensus 120 ~iA 122 (129)
.+.
T Consensus 92 ~~~ 94 (112)
T 1z7u_A 92 ALS 94 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 53
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=96.28 E-value=0.011 Score=42.41 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=48.9
Q ss_pred HHHHHHH-hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 47 MARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 47 ilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
||..|+- .+++.+..|+...|- +.+-+-.+++.||+.|||++.. ..+| .||++|+..++
T Consensus 58 vL~~L~~~~~~~t~~eLa~~l~i--------------~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 123 (166)
T 3deu_A 58 TLHNIHQLPPDQSQIQLAKAIGI--------------EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA 123 (166)
T ss_dssp HHHHHHHSCSSEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCC--------------CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence 7777887 678999999998764 2356778999999999999765 2344 49999999999
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 124 ~~~~~~ 129 (166)
T 3deu_A 124 EMEEVI 129 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 54
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.27 E-value=0.011 Score=40.85 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|+...|- +.+-+..+++.||+.|||+...+ ++| .||++|+..++
T Consensus 41 ~iL~~l~~~~~~t~~ela~~l~~--------------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAERMEV--------------KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence 37777888899999999998753 34578889999999999987542 333 58999999998
Q ss_pred HHHHH
Q 033029 120 QVAGR 124 (129)
Q Consensus 120 ~iA~~ 124 (129)
.+...
T Consensus 107 ~~~~~ 111 (155)
T 1s3j_A 107 EVLAG 111 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86654
No 55
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.25 E-value=0.017 Score=40.12 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||++.. .++| .||++|+..++
T Consensus 47 ~iL~~l~~~~~~t~~ela~~l~i--------------~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~ 112 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAKLSLM--------------EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAE 112 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHH
Confidence 37777888899999999998653 2356778999999999999754 2333 59999999998
Q ss_pred HHHHH
Q 033029 120 QVAGR 124 (129)
Q Consensus 120 ~iA~~ 124 (129)
.+...
T Consensus 113 ~~~~~ 117 (155)
T 3cdh_A 113 SLVAS 117 (155)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87554
No 56
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=96.23 E-value=0.019 Score=39.80 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHhC-CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 47 MARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 47 ilR~lYl~g-~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
||..|+-.+ ++.+..|....|- +.+-+-.+++.||+.|||++.+ ..+| .||++|+..++
T Consensus 44 vL~~l~~~~~~~t~~eLa~~l~i--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~ 109 (150)
T 3fm5_A 44 VLVLACEQAEGVNQRGVAATMGL--------------DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD 109 (150)
T ss_dssp HHHHHHHSTTCCCSHHHHHHHTC--------------CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHCC--------------CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence 677777654 7899999998763 2346778899999999998754 2344 59999999999
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 110 ~~~~~~ 115 (150)
T 3fm5_A 110 DAKARV 115 (150)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876553
No 57
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.23 E-value=0.013 Score=44.62 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=47.6
Q ss_pred hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHH
Q 033029 54 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 123 (129)
Q Consensus 54 ~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~ 123 (129)
.+++.+..|+...|-. .+-+..+|+.||+.|||+..+.++=.||++|+....++..
T Consensus 18 ~~~~~~~~lA~~l~vs--------------~~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVS--------------PPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLYR 73 (214)
T ss_dssp CSCCCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHHH
Confidence 4688899999887653 3478899999999999999887788999999999888765
No 58
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.07 E-value=0.02 Score=41.35 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhH
Q 033029 45 ASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDL 118 (129)
Q Consensus 45 ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~l 118 (129)
..||+.|. .|+...+.|++.-. .-|.+.+-..|..||+.|||++.. ...| .||++|++++
T Consensus 29 l~IL~~L~-~g~~rf~eL~~~l~-------------gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 29 GILFYHMI-DGKKRFNEFRRICP-------------SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHHh-cCCcCHHHHHHHhc-------------ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 34888887 89999999998752 235579999999999999999754 2233 6999999988
Q ss_pred HHHHH
Q 033029 119 DQVAG 123 (129)
Q Consensus 119 D~iA~ 123 (129)
..+..
T Consensus 95 ~~l~~ 99 (131)
T 4a5n_A 95 PIVLQ 99 (131)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 59
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.05 E-value=0.019 Score=41.37 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCC-----CceeCcchHhhHHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG-----GRRITSSGQRDLDQ 120 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~-----GR~lT~~G~~~lD~ 120 (129)
.||+.|+ +|+..++.|.+..|- |.+.+-..|+.||+.|||++.... .-.||++|+..+..
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~lgi--------------s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~ 92 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSLGL--------------AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPL 92 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHHCC--------------CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHH
Confidence 3788886 899999999987643 456899999999999999976532 34799999987765
Q ss_pred HH
Q 033029 121 VA 122 (129)
Q Consensus 121 iA 122 (129)
+.
T Consensus 93 l~ 94 (146)
T 2f2e_A 93 LV 94 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 60
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.03 E-value=0.0096 Score=40.19 Aligned_cols=59 Identities=7% Similarity=0.062 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchh-HHHHHHHHHHhCCceeecCCCCc---eeCcchHhhH
Q 033029 45 ASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGA-IARHILQQLQNMNIIDIEPKGGR---RITSSGQRDL 118 (129)
Q Consensus 45 ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~-iiR~~lqqLE~~g~vek~~~~GR---~lT~~G~~~l 118 (129)
..|+..|.-+||..+..|++..|-. .. -+|..|+.||+.|+|++.. .|| .||++|+..|
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit--------------~~~aVr~hL~~Le~eGlV~~~~-~gRP~w~LT~~g~~~~ 76 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLT--------------KARDINAVLIDMERQGDVYRQG-TTPPIWHLTDKKRERM 76 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGG--------------GHHHHHHHHHHHHHTTSEEEEC-SSSCEEEECHHHHTTT
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCC--------------cHHHHHHHHHHHHHCCCEEecC-CCCCCeEeCHhHHhHh
Confidence 4577778888999999999988753 34 7999999999999999763 467 7899998765
No 61
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=95.98 E-value=0.0078 Score=41.33 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=45.6
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc-----eeCcchHhhHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR-----RITSSGQRDLD 119 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR-----~lT~~G~~~lD 119 (129)
||.-|. .+|.--..+.+.... +..-+.+.+-.+|+.||+.|||+... .+|| .||++|+..++
T Consensus 14 IL~~L~-~~~~~gyel~~~l~~----------~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~ 82 (108)
T 3l7w_A 14 ILAIVS-KHDSYGYDISQTIKL----------IASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLV 82 (108)
T ss_dssp HHHHHH-HSCEEHHHHHHHHTT----------TCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHH
T ss_pred HHHHHH-cCCCcHHHHHHHHHH----------HhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHH
Confidence 555555 356444444444432 12456678999999999999998653 2454 49999999998
Q ss_pred HHHHH
Q 033029 120 QVAGR 124 (129)
Q Consensus 120 ~iA~~ 124 (129)
++...
T Consensus 83 ~~~~~ 87 (108)
T 3l7w_A 83 YLTKE 87 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87655
No 62
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.96 E-value=0.0088 Score=41.54 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD~ 120 (129)
||..|+-.+++.+..|....|- +.+-+..+|+.||+.|||+...+ .+| .||++|+..++.
T Consensus 52 iL~~l~~~~~~t~~ela~~l~~--------------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 117 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERLYL--------------DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK 117 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred HHHHHHhCCCcCHHHHHHHhCC--------------CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence 7777888899999999998762 34577889999999999997542 333 589999988776
Q ss_pred HH
Q 033029 121 VA 122 (129)
Q Consensus 121 iA 122 (129)
+.
T Consensus 118 ~~ 119 (153)
T 2pex_A 118 AG 119 (153)
T ss_dssp ST
T ss_pred HH
Confidence 43
No 63
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=95.95 E-value=0.016 Score=41.19 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=49.3
Q ss_pred HHHHHHHh--CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhH
Q 033029 47 MARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~--g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~l 118 (129)
||..|+-. +++.+..|....|-. + +-+-.+++.||+.|||++.. ..+| .||++|+..+
T Consensus 51 vL~~l~~~~~~~~t~~eLa~~l~~~------~--------~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 51 TLRLLRSVHPEGMATLQIADRLISR------A--------PDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHC---------C--------THHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCC------h--------hhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 77888885 489999999987532 2 36778999999999999754 3344 5999999999
Q ss_pred HHHHHHh
Q 033029 119 DQVAGRI 125 (129)
Q Consensus 119 D~iA~~i 125 (129)
+.+...+
T Consensus 117 ~~~~~~~ 123 (168)
T 3u2r_A 117 KDLEEPV 123 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 64
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=95.93 E-value=0.019 Score=44.91 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=46.1
Q ss_pred hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHH
Q 033029 54 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 123 (129)
Q Consensus 54 ~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~ 123 (129)
.+|+|...|+..-|= |-..+|..++-|++.|||+..+ +|=.||++|++...++-.
T Consensus 28 ~~~V~~~~LA~~Lgv--------------S~~SV~~~lkkL~e~GLV~~~~-~Gv~LTe~G~~~A~~i~~ 82 (200)
T 2p8t_A 28 KEPLGRKQISERLEL--------------GEGSVRTLLRKLSHLDIIRSKQ-RGHFLTLKGKEIRDKLLS 82 (200)
T ss_dssp TSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEC---CEEECHHHHHHHHHHHT
T ss_pred cCCccHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEEeC-CCeEECHHHHHHHHHHHH
Confidence 589999999999872 3358999999999999999887 899999999998777654
No 65
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=95.92 E-value=0.0085 Score=40.58 Aligned_cols=66 Identities=9% Similarity=0.098 Sum_probs=50.4
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCc----eeCcchHhhHHHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQRDLDQVA 122 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR----~lT~~G~~~lD~iA 122 (129)
||..|+-.+|+.+..|....|-. .++ +.+-+-.+|+.||+.|||++.+++.| .||++|+..++.+.
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~--~~~--------s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~~ 84 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQ--KDW--------SPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSK 84 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHH--CCC--------CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHhcc--CCC--------cHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHHH
Confidence 66777778999999999998742 222 34578899999999999998765332 47999998876653
No 66
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=95.91 E-value=0.0013 Score=53.47 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHH
Q 033029 43 RAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 121 (129)
Q Consensus 43 R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~i 121 (129)
|-..||..||-.+++++..|+..+|-. ..-||+.|+.||+.|+|+... .|=.||++|+..+..+
T Consensus 21 r~~~iL~~l~~~~~~t~~eLa~~l~vs--------------~~Tv~r~l~~Le~~Glv~~~~-~gi~LT~~G~~~~~~~ 84 (345)
T 2o0m_A 21 ERFQILRNIYWMQPIGRRSLSETMGIT--------------ERVLRTETDVLKQLNLIEPSK-SGMTLTERGLEVYQGL 84 (345)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEEe-cceEEcHHHHHHHHHH
Confidence 445699999999999999999998753 347999999999999998544 4789999999766544
No 67
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=95.79 E-value=0.04 Score=40.31 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=51.2
Q ss_pred HHHHHHHH--hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhh
Q 033029 46 SMARKIYL--RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRD 117 (129)
Q Consensus 46 SilR~lYl--~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~ 117 (129)
.||..|+- .+++.++.|+...|- +.+-+-.+++.||+.|||++.. ..+| .||++|+..
T Consensus 45 ~vL~~L~~~~~~~~t~~eLa~~l~i--------------s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~ 110 (189)
T 3nqo_A 45 MTILSILHLPEEETTLNNIARKMGT--------------SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKV 110 (189)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHH
Confidence 37777887 679999999998763 2346778999999999998644 3455 589999999
Q ss_pred HHHHHHHh
Q 033029 118 LDQVAGRI 125 (129)
Q Consensus 118 lD~iA~~i 125 (129)
++.+....
T Consensus 111 ~~~~~~~~ 118 (189)
T 3nqo_A 111 MVTCSRTG 118 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
No 68
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.75 E-value=0.02 Score=39.40 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCCc--hhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCceeCcchHhhHHHH
Q 033029 46 SMARKIYLRQGLG--VGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGRRITSSGQRDLDQV 121 (129)
Q Consensus 46 SilR~lYl~g~vG--V~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR~lT~~G~~~lD~i 121 (129)
.|++.|. .|+.. ++.|.+... .-|.+.+-..|+.||+.|+|++... .--.||++|++.+..+
T Consensus 31 ~IL~~L~-~g~~~~~~~eL~~~l~-------------gis~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~l 96 (111)
T 3df8_A 31 LIISVLG-NGSTRQNFNDIRSSIP-------------GISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSL 96 (111)
T ss_dssp HHHHHHT-SSSSCBCHHHHHHTST-------------TCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCCCHHHHHHHcc-------------CCCHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHHH
Confidence 4788887 88988 999998751 2355789999999999999997642 3458999999987765
Q ss_pred H
Q 033029 122 A 122 (129)
Q Consensus 122 A 122 (129)
.
T Consensus 97 ~ 97 (111)
T 3df8_A 97 M 97 (111)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.72 E-value=0.014 Score=39.57 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~l 118 (129)
|+..|+-.+++.+..|....|- +.+-+..+++.||+.|||+...+ .+| .||++|+..+
T Consensus 36 iL~~l~~~~~~~~~ela~~l~i--------------s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 36 ILQTLLKDAPLHQLALQERLQI--------------DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 7778888899999999998753 33578889999999999987542 343 5899999998
No 70
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=95.65 E-value=0.023 Score=37.52 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=45.7
Q ss_pred HHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHh
Q 033029 45 ASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQR 116 (129)
Q Consensus 45 ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~ 116 (129)
..|+..| ++++.++.|....|- |.+-+++.|+.||+.|+|+... +.-.||+.|+.
T Consensus 34 ~~Il~~L--~~~~~~~eLa~~l~i--------------s~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~~ 88 (96)
T 1y0u_A 34 RKILRML--DKGRSEEEIMQTLSL--------------SKKQLDYHLKVLEAGFCIERVG-ERWVVTDAGKI 88 (96)
T ss_dssp HHHHHHH--HTTCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECTTTCC
T ss_pred HHHHHHH--cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEC-CEEEECCCchH
Confidence 3478877 899999999998843 3468999999999999999876 66789999864
No 71
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.61 E-value=0.036 Score=37.98 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHHH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLDQ 120 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD~ 120 (129)
||..|+-.++ .+..|+...|- +.+-+-.+++.||+.|||++.++ .+| .||++|+..++.
T Consensus 42 iL~~l~~~~~-~~~~la~~l~~--------------~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~ 106 (144)
T 3f3x_A 42 ILKATSEEPR-SMVYLANRYFV--------------TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLE 106 (144)
T ss_dssp HHHHHHHSCE-EHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHCC--------------ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHH
Confidence 7777888888 99999998763 23467789999999999987542 333 599999999988
Q ss_pred HHHHh
Q 033029 121 VAGRI 125 (129)
Q Consensus 121 iA~~i 125 (129)
+...+
T Consensus 107 ~~~~~ 111 (144)
T 3f3x_A 107 ANEVL 111 (144)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 72
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=95.59 E-value=0.013 Score=40.50 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=42.9
Q ss_pred chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCceeCcchHhhHHHHH
Q 033029 58 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 58 GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR~lT~~G~~~lD~iA 122 (129)
.+..|+..||- |..-+|.+|+.||+.|+|+..+ ..|-.+++....++..+.
T Consensus 45 s~~eLa~~lgV--------------Sr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 45 VASKIADRVGI--------------TRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 67888888875 3568999999999999999888 469999999888887764
No 73
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.58 E-value=0.025 Score=39.34 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=47.2
Q ss_pred HHHHHH-HhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 47 MARKIY-LRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 47 ilR~lY-l~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
||..|+ -.+++.+..|....|-. + +-+-.+++.||+.|||++.. .++| .||++|+..++
T Consensus 52 iL~~L~~~~~~~~~~ela~~l~i~------~--------~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~ 117 (160)
T 3boq_A 52 AMAQLARNPDGLSMGKLSGALKVT------N--------GNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK 117 (160)
T ss_dssp HHHHHHHCTTCEEHHHHHHHCSSC------C--------SCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCC------h--------hhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHH
Confidence 677775 46899999999987532 2 24667899999999999754 2343 59999999998
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 118 ~~~~~~ 123 (160)
T 3boq_A 118 QASEAH 123 (160)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 875543
No 74
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.56 E-value=0.01 Score=40.71 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|+...|- +.+-+..+++.||+.|||+..++ ++| .||++|+..++
T Consensus 44 ~iL~~l~~~~~~~~~~la~~l~~--------------~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 44 LALLLLWEHETLTVKKMGEQLYL--------------DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHSEEEHHHHHHTTTC--------------CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHCCCCCHHHHHHHHCC--------------CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 37777888899999999987642 33578889999999999997543 344 58999999887
Q ss_pred HHH
Q 033029 120 QVA 122 (129)
Q Consensus 120 ~iA 122 (129)
.+.
T Consensus 110 ~~~ 112 (147)
T 1z91_A 110 KAV 112 (147)
T ss_dssp GTT
T ss_pred HHH
Confidence 653
No 75
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=95.54 E-value=0.092 Score=36.12 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=50.6
Q ss_pred HHHhHHHHHHHHHHhCCC-------chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCc
Q 033029 40 YYVRAASMARKIYLRQGL-------GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITS 112 (129)
Q Consensus 40 ~Y~R~ASilR~lYl~g~v-------GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~ 112 (129)
.|-..+.-++..-+.|.. .+..|+..||- |..-+|.+|+.||+.|+|+..+..|-.+++
T Consensus 10 ~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~v--------------Sr~tvr~al~~L~~~Gli~~~~~~G~~V~~ 75 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQI--------------NPLTVSKAYQSLLDDNVIEKRRGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECT
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEecCCeEEEeC
Confidence 355555556555555432 56788888865 346899999999999999998888999998
Q ss_pred chHhhHHHH
Q 033029 113 SGQRDLDQV 121 (129)
Q Consensus 113 ~G~~~lD~i 121 (129)
....++..+
T Consensus 76 ~~~~~~~~~ 84 (113)
T 3tqn_A 76 GARQRLLTQ 84 (113)
T ss_dssp THHHHHHHH
T ss_pred CchHHHHHH
Confidence 877665543
No 76
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.53 E-value=0.033 Score=38.93 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCchhhhHH-HhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHH
Q 033029 45 ASMARKIYLRQGLGVGSFRR-IYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 123 (129)
Q Consensus 45 ASilR~lYl~g~vGV~~lr~-~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~ 123 (129)
.|||++|+-+++..++.|.. .-+- ..+.+=+-++-||+.|||+.+. .+=.||++|+..+...+.
T Consensus 19 fsiL~~L~~~~~~t~~~Lae~~l~~--------------drstvsrnl~~L~r~GlVe~~~-~Dl~LT~~G~~~l~~a~~ 83 (95)
T 1bja_A 19 ATILITIAKKDFITAAEVREVHPDL--------------GNAVVNSNIGVLIKKGLVEKSG-DGLIITGEAQDIISNAAT 83 (95)
T ss_dssp HHHHHHHHHSTTBCHHHHHHTCTTS--------------CHHHHHHHHHHHHTTTSEEEET-TEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHhcc--------------cHHHHHHHHHHHHHCCCeecCC-CCeeeCHhHHHHHHHHHH
Confidence 68999999999999999998 4332 2245556689999999999443 356799999999988653
No 77
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=95.44 E-value=0.023 Score=39.67 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=33.7
Q ss_pred CCchhHHHHHHHHHHhCCceeecC---CCCc-----eeCcchHhhHHHHHHH
Q 033029 81 KSSGAIARHILQQLQNMNIIDIEP---KGGR-----RITSSGQRDLDQVAGR 124 (129)
Q Consensus 81 ~asg~iiR~~lqqLE~~g~vek~~---~~GR-----~lT~~G~~~lD~iA~~ 124 (129)
.-+.+.+-.+|+.||+.|||+... .+|+ .||++|+..++.....
T Consensus 44 ~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 95 (116)
T 3f8b_A 44 ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFES 95 (116)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHH
Confidence 445678999999999999998652 2343 6999999999886654
No 78
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.44 E-value=0.037 Score=39.14 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHH
Q 033029 45 ASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLD 119 (129)
Q Consensus 45 ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD 119 (129)
-.||..|--+|+..+..|..... -|+ |..-+++-|+.||+.|+|+....+=-.||++|+..|.
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~----~gi--------S~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDE----IRI--------SKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTT----CCS--------CHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHh----cCC--------CHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHHH
Confidence 45787777779999999998651 122 4468999999999999999864333699999998875
No 79
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=95.35 E-value=0.053 Score=37.74 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=47.0
Q ss_pred HHHHHHHHh------CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC-CCc---eeCcchH
Q 033029 46 SMARKIYLR------QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK-GGR---RITSSGQ 115 (129)
Q Consensus 46 SilR~lYl~------g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~-~GR---~lT~~G~ 115 (129)
++++.|... +++-...|++.-+ =+.+-+++.|..||+.|||+.... .|| .||++|+
T Consensus 20 ~vL~~L~~~~~~~~g~~~s~~eLa~~l~--------------l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~ 85 (96)
T 2obp_A 20 EVLLVLREAGIENGATPWSLPKIAKRAQ--------------LPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGA 85 (96)
T ss_dssp HHHHHHHHHTSSTTCCCCBHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHH
T ss_pred HHHHHHHHHHhhCCCCCcCHHHHHHHhC--------------CchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHH
Confidence 567777665 6677777777533 356799999999999999986442 355 5999999
Q ss_pred hhHHHH
Q 033029 116 RDLDQV 121 (129)
Q Consensus 116 ~~lD~i 121 (129)
..+.+.
T Consensus 86 ~~l~~~ 91 (96)
T 2obp_A 86 ALAAQL 91 (96)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
No 80
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.34 E-value=0.039 Score=38.26 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHh---CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCceeCcchHh
Q 033029 43 RAASMARKIYLR---QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSGQR 116 (129)
Q Consensus 43 R~ASilR~lYl~---g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR~lT~~G~~ 116 (129)
+|..+|..|..+ +++.+..|+..+|- |-+.++++|++|+++|||+... .||..|+.....
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i--------------~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNL--------------SEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTS--------------CHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHH
Confidence 466677777764 57899999998754 3469999999999999999764 378899876543
No 81
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=95.25 E-value=0.022 Score=38.31 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=42.0
Q ss_pred HHHHHHHHHhC-CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec----CCCCceeC
Q 033029 45 ASMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE----PKGGRRIT 111 (129)
Q Consensus 45 ASilR~lYl~g-~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~----~~~GR~lT 111 (129)
..|+..++-.| ++.+..|+..+|-. .+-+|.+|+.|++.|+|+.. +.+|+.+.
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs--------------~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIK--------------VNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSC--------------HHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 45888888778 89999999988753 46899999999999999987 66675554
No 82
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=95.24 E-value=0.045 Score=38.61 Aligned_cols=85 Identities=14% Similarity=0.178 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHh--CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHH
Q 033029 14 EFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 91 (129)
Q Consensus 14 ~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~--g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~l 91 (129)
.+...+.+.|+..| +.+ +.|. +|..||.. |++.++.|....|-. .+-+=.++
T Consensus 19 ~l~~~~~~~l~~~g----Lt~--~q~~------vL~~L~~~~~~~~t~~eLa~~l~~~--------------~~tvs~~v 72 (147)
T 4b8x_A 19 ILLGEVDAVVKPYG----LTF--ARYE------ALVLLTFSKSGELPMSKIGERLMVH--------------PTSVTNTV 72 (147)
T ss_dssp HHHHHHHHHHGGGT----CCH--HHHH------HHHHHHTSGGGEEEHHHHHHHHTCC--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHcC----CCH--HHHH------HHHHHHHCCCCCcCHHHHHHHHCCC--------------HHHHHHHH
Confidence 34455566666543 222 2344 67777764 578999999987653 23566689
Q ss_pred HHHHhCCceeecC--CCCc----eeCcchHhhHHHHHHH
Q 033029 92 QQLQNMNIIDIEP--KGGR----RITSSGQRDLDQVAGR 124 (129)
Q Consensus 92 qqLE~~g~vek~~--~~GR----~lT~~G~~~lD~iA~~ 124 (129)
..||+.|||++.+ ..+| .||++|+..++.+...
T Consensus 73 ~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 111 (147)
T 4b8x_A 73 DRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAATRD 111 (147)
T ss_dssp HHHHHTTSEEEEECC----CEEEEECHHHHHHHHHHHHH
T ss_pred HHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHHHHH
Confidence 9999999998654 3455 3899999999987654
No 83
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.18 E-value=0.027 Score=40.09 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD 119 (129)
.||..|+ .|+..++.|....+| -|.+.+-..|+.||+.|||++... .+| .||++|+..+.
T Consensus 39 ~IL~~L~-~g~~~~~eLa~~l~g-------------is~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 104 (131)
T 1yyv_A 39 LILVALR-DGTHRFSDLRRXMGG-------------VSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSD 104 (131)
T ss_dssp HHHHHGG-GCCEEHHHHHHHSTT-------------CCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHhcc-------------CCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHH
Confidence 3677777 899999999987631 255789999999999999986542 233 69999998776
Q ss_pred HHH
Q 033029 120 QVA 122 (129)
Q Consensus 120 ~iA 122 (129)
.+.
T Consensus 105 ~l~ 107 (131)
T 1yyv_A 105 XVA 107 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 84
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=94.98 E-value=0.2 Score=35.08 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=46.1
Q ss_pred HHHhHHHHHHHHHHhCCC-------chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCc
Q 033029 40 YYVRAASMARKIYLRQGL-------GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITS 112 (129)
Q Consensus 40 ~Y~R~ASilR~lYl~g~v-------GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~ 112 (129)
.|...+..++.--+.|.. .+..|+..||- |..-+|.+|+.|++.|+|+..+..|-.+++
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAV--------------NPNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCeEEEecCCEEEEec
Confidence 455556666655555532 47788888875 346999999999999999998888999988
Q ss_pred ch
Q 033029 113 SG 114 (129)
Q Consensus 113 ~G 114 (129)
.-
T Consensus 80 ~~ 81 (125)
T 3neu_A 80 DK 81 (125)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 85
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.90 E-value=0.053 Score=40.68 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=50.6
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhhHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDLD 119 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~lD 119 (129)
.||..|+-.+++.+..|....|- +.+-+-.+++.||+.|||+...+ .+| .||++|+..++
T Consensus 52 ~iL~~L~~~~~~t~~eLa~~l~i--------------~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~ 117 (207)
T 2fxa_A 52 HILWIAYQLNGASISEIAKFGVM--------------HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW 117 (207)
T ss_dssp HHHHHHHHHTSEEHHHHHHHTTC--------------CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence 37788888899999999998764 23466779999999999987553 344 59999999999
Q ss_pred HHHHH
Q 033029 120 QVAGR 124 (129)
Q Consensus 120 ~iA~~ 124 (129)
.+...
T Consensus 118 ~~~~~ 122 (207)
T 2fxa_A 118 SLLEE 122 (207)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 86
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=94.79 E-value=0.041 Score=41.97 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=43.8
Q ss_pred CCch--hhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHH
Q 033029 56 GLGV--GSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 123 (129)
Q Consensus 56 ~vGV--~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~ 123 (129)
++.. ..|+...|- |.+-+..+|+.||+.|||+..++++=.||++|+..+..+..
T Consensus 22 ~~~~~~~~La~~l~v--------------s~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~~ 77 (230)
T 1fx7_A 22 GVTPLRARIAERLDQ--------------SGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAVMR 77 (230)
T ss_dssp TSCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHHHHHHHH
Confidence 4556 888887643 33578899999999999999887778899999999887653
No 87
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=94.69 E-value=0.16 Score=35.70 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=46.5
Q ss_pred HHHhHHHHHHHHHHhCC------C-chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCc
Q 033029 40 YYVRAASMARKIYLRQG------L-GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITS 112 (129)
Q Consensus 40 ~Y~R~ASilR~lYl~g~------v-GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~ 112 (129)
.|...+..+|.--+.|. + .+..|+..||- |..-+|.+|+.||..|+|+..+..|-.+++
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~Gli~~~~g~G~~V~~ 77 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKI--------------NPNTVAKAYKELEAQKVIRTIPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECS
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEecCCeEEEcc
Confidence 46666666666555553 2 67888888875 346899999999999999998888999988
Q ss_pred c
Q 033029 113 S 113 (129)
Q Consensus 113 ~ 113 (129)
.
T Consensus 78 ~ 78 (126)
T 3by6_A 78 N 78 (126)
T ss_dssp C
T ss_pred C
Confidence 3
No 88
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=94.66 E-value=0.11 Score=38.17 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC---CC-----ceeCcchHhh
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK---GG-----RRITSSGQRD 117 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~---~G-----R~lT~~G~~~ 117 (129)
.||.-|. .+|.--..|.+.+... -.++...|-+-|-..|+.||+.|||+.... +| -.||++|+..
T Consensus 6 ~iL~lL~-~~~~~gyel~~~l~~~------~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~ 78 (179)
T 1yg2_A 6 VILTVLS-TRDATGYDITKEFSAS------IGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSA 78 (179)
T ss_dssp HHHHHHH-HCCBCHHHHHHHHTTG------GGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHH
T ss_pred HHHHHHh-cCCCCHHHHHHHHHHH------hCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHH
Confidence 3566665 4888888888888643 234556777899999999999999986431 22 4699999999
Q ss_pred HHHHHHH
Q 033029 118 LDQVAGR 124 (129)
Q Consensus 118 lD~iA~~ 124 (129)
+.+...+
T Consensus 79 l~~~~~~ 85 (179)
T 1yg2_A 79 LGEWFDQ 85 (179)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9886544
No 89
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.65 E-value=0.21 Score=32.89 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCC---ceeCcchHhhHHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDLDQ 120 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~G---R~lT~~G~~~lD~ 120 (129)
.|++.| .+|+..++.|....|-. .+.+.+.|+.||+.|+|+...++. -.||+.+...+=+
T Consensus 27 ~Il~~L-~~~~~~~~ela~~l~is--------------~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~ 89 (102)
T 3pqk_A 27 MLVCTL-VEGEFSVGELEQQIGIG--------------QPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVN 89 (102)
T ss_dssp HHHHHH-HTCCBCHHHHHHHHTCC--------------TTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHH
T ss_pred HHHHHH-HhCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHH
Confidence 588888 57999999999988652 247899999999999998776432 4688876655433
No 90
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=94.59 E-value=0.045 Score=41.06 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=41.8
Q ss_pred CchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHH
Q 033029 57 LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 121 (129)
Q Consensus 57 vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~i 121 (129)
+....|+..||- |...+|.+|+.||..|||+..+..|-.+++-...++..+
T Consensus 40 L~E~~La~~lgV--------------SRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~~~~~e~ 90 (222)
T 3ihu_A 40 LVETDLVAHFGV--------------GRNSVREALQRLAAEGIVDLQRHRGAVIRRLSLQETLDV 90 (222)
T ss_dssp ECHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECSTTCEEECCCCHHHHHHH
T ss_pred cCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHHHHHH
Confidence 346778888875 457999999999999999998888999988777666554
No 91
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=94.50 E-value=0.069 Score=37.24 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC---CCCc-----eeCcchHhhH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP---KGGR-----RITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~---~~GR-----~lT~~G~~~l 118 (129)
||--|. .+|.---.|.+.... .| +..-|.+.|-.+|+.||+.|||+... .+|| .||++|+..|
T Consensus 14 IL~~L~-~~~~~Gyei~~~l~~---~~-----~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 14 ILYIIS-QEEVYGYELSTKLNK---HG-----FTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHH-HSCEEHHHHHHHHHH---TT-----CTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHH---cC-----CCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 555554 566544455555443 12 34556788999999999999998642 2342 4999999999
Q ss_pred HHHHHHh
Q 033029 119 DQVAGRI 125 (129)
Q Consensus 119 D~iA~~i 125 (129)
+......
T Consensus 85 ~~~~~~~ 91 (115)
T 4esb_A 85 EEFKQSW 91 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876553
No 92
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=94.36 E-value=0.076 Score=43.48 Aligned_cols=66 Identities=9% Similarity=0.200 Sum_probs=45.6
Q ss_pred HHHHHHHh--CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec--CCCCc----eeCcchHhhH
Q 033029 47 MARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE--PKGGR----RITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~--g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~--~~~GR----~lT~~G~~~l 118 (129)
||+.|+-+ +++.+..|+...+ -+.+-+=.+|+.||+.|||++. ++..| .||++|+..+
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~--------------~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~ 474 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSE--------------FKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI 474 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSC--------------CCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred HHHHHHhCCCCCcCHHHHHHHHC--------------CCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHH
Confidence 55566666 5666666665422 2334566789999999999864 34455 3799999999
Q ss_pred HHHHHHhh
Q 033029 119 DQVAGRIV 126 (129)
Q Consensus 119 D~iA~~i~ 126 (129)
+++...+.
T Consensus 475 ~~~~~~~~ 482 (487)
T 1hsj_A 475 QKLISELE 482 (487)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHH
Confidence 98877653
No 93
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=94.36 E-value=0.035 Score=39.16 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=48.0
Q ss_pred HHhHHHHHHHHHHhCCC-------chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcc
Q 033029 41 YVRAASMARKIYLRQGL-------GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 113 (129)
Q Consensus 41 Y~R~ASilR~lYl~g~v-------GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~ 113 (129)
|-..+.-++..-+.|.. .+..|+..||- |..-+|.+|+.||+.|+|+..+..|-.+++.
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~ 78 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVEV--------------NANTVMRSYEYLQSQEVIYNKRGIGFFVASG 78 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-C--------------CSGGGHHHHHHHHTTTSEEEETTTEEEECTT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEEcCCccEEccC
Confidence 44555566665555533 34455555543 4468999999999999999998889999998
Q ss_pred hHhhHHHHH
Q 033029 114 GQRDLDQVA 122 (129)
Q Consensus 114 G~~~lD~iA 122 (129)
....+..+.
T Consensus 79 ~~~~~~~~~ 87 (126)
T 3ic7_A 79 AKMLIHSLR 87 (126)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 876665543
No 94
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=94.35 E-value=0.057 Score=41.18 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=46.4
Q ss_pred HHHHHHHh--CCCch--hhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHH
Q 033029 47 MARKIYLR--QGLGV--GSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 47 ilR~lYl~--g~vGV--~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA 122 (129)
+|+.||.- .++.+ ..|+...|-. .+-+..+++.||+.|||+..++.+=.||++|+....++.
T Consensus 11 yL~~i~~l~~~~~~~~~~~la~~l~vs--------------~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~~~~~~ 76 (226)
T 2qq9_A 11 YLRTIYELEEEGVTPLRARIAERLEQS--------------GPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAVM 76 (226)
T ss_dssp HHHHHHHHHHHTCCCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHHHHHHH
Confidence 45555542 23444 7888876542 345677999999999999987777899999999988776
Q ss_pred H
Q 033029 123 G 123 (129)
Q Consensus 123 ~ 123 (129)
.
T Consensus 77 ~ 77 (226)
T 2qq9_A 77 R 77 (226)
T ss_dssp H
T ss_pred H
Confidence 4
No 95
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.32 E-value=0.21 Score=35.37 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=46.6
Q ss_pred HHHHHHHhCC-CchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHH
Q 033029 47 MARKIYLRQG-LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLD 119 (129)
Q Consensus 47 ilR~lYl~g~-vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD 119 (129)
+|..|+-.++ +....|+...|-. .+-+=.+++.||+.|||++.+ ..+| .||++|+..++
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~~--------------~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~ 101 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGIE--------------QPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE 101 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCcC--------------HHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence 6777776544 5557788876542 245667899999999998644 4455 47999999998
Q ss_pred HHHHHh
Q 033029 120 QVAGRI 125 (129)
Q Consensus 120 ~iA~~i 125 (129)
.+...+
T Consensus 102 ~~~~~~ 107 (151)
T 4aik_A 102 QVDGVI 107 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 96
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=94.15 E-value=0.07 Score=38.37 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=43.4
Q ss_pred HHHHHHHhCC---CchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC--CCc----eeCcchHhh
Q 033029 47 MARKIYLRQG---LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRD 117 (129)
Q Consensus 47 ilR~lYl~g~---vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~--~GR----~lT~~G~~~ 117 (129)
||..|+-.++ +.+..|....|-. + +-+-.+|+.||+.|||+...+ .+| .||++|+..
T Consensus 74 iL~~L~~~~~~~~~t~~eLa~~l~is------~--------~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~ 139 (181)
T 2fbk_A 74 LLLTLYRSAPPEGLRPTELSALAAIS------G--------PSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRAL 139 (181)
T ss_dssp HHHHHHHHCCSSCBCHHHHHHHCSCC------S--------GGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHCCC------H--------HHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHH
Confidence 5666666654 7777777765421 1 244558899999999997542 233 699999999
Q ss_pred HHHHHHH
Q 033029 118 LDQVAGR 124 (129)
Q Consensus 118 lD~iA~~ 124 (129)
++.+...
T Consensus 140 ~~~~~~~ 146 (181)
T 2fbk_A 140 VTHLLPA 146 (181)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887554
No 97
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=94.13 E-value=0.062 Score=39.05 Aligned_cols=71 Identities=11% Similarity=0.025 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC---CCc-----eeCcchHhhH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK---GGR-----RITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~---~GR-----~lT~~G~~~l 118 (129)
||.-|. .+|.--..|.+..+..-. .+..-+-+.+-.+|+.||+.|||+.... +|+ .||++|+..+
T Consensus 46 IL~~L~-~~~~~gyeI~~~l~~~~~------~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l 118 (145)
T 1xma_A 46 ILSLLI-EGDSYGYEISKNIRIKTD------ELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYY 118 (145)
T ss_dssp HHHHHH-HCCEEHHHHHHHHHHHHT------TSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHH
T ss_pred HHHHHH-hCCCCHHHHHHHHHHhhC------CccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHH
Confidence 777775 467655555554432211 1123456789999999999999986531 232 7999999999
Q ss_pred HHHHHH
Q 033029 119 DQVAGR 124 (129)
Q Consensus 119 D~iA~~ 124 (129)
......
T Consensus 119 ~~~~~~ 124 (145)
T 1xma_A 119 KQKCEE 124 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886554
No 98
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=94.11 E-value=0.041 Score=41.14 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=42.6
Q ss_pred CchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHH
Q 033029 57 LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 57 vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA 122 (129)
+....|+..||- |..-+|.+|+.||..|||+..+..|-.+++-...++..+-
T Consensus 36 L~e~~La~~lgV--------------SRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~el~ 87 (218)
T 3sxy_A 36 LNVRELSEKLGI--------------SFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEKFIRETI 87 (218)
T ss_dssp ECHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHHHHHHHH
T ss_pred eCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCHHHHHHHH
Confidence 456788888875 4579999999999999999988889999987777666543
No 99
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=94.01 E-value=0.21 Score=32.57 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCC---ceeCcchHhhHHHHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDLDQVA 122 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~G---R~lT~~G~~~lD~iA 122 (129)
.|++.|.- |++.++.|....|- |.+-+.+-|+.||+.|+|+...+|. -.||+.+-..+-...
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~i--------------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l 91 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQL--------------SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLL 91 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHH
Confidence 47777654 99999999998754 3468899999999999999876432 358888776665555
Q ss_pred HHhh
Q 033029 123 GRIV 126 (129)
Q Consensus 123 ~~i~ 126 (129)
.+++
T Consensus 92 ~~~~ 95 (98)
T 3jth_A 92 HSLY 95 (98)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 4443
No 100
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=93.96 E-value=0.099 Score=36.03 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHHhCCceeecCCCC---ceeCcchHhhHHHHHHHh
Q 033029 83 SGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDLDQVAGRI 125 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~~~~G---R~lT~~G~~~lD~iA~~i 125 (129)
+-+.|=-+|+.||+.|||+...+.. -.||++|+..|.+...+.
T Consensus 43 s~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 43 SDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFF 88 (99)
T ss_dssp CHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhH
Confidence 4467778999999999999765223 379999999999877654
No 101
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=93.93 E-value=0.22 Score=35.25 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=38.5
Q ss_pred chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhH
Q 033029 58 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 118 (129)
Q Consensus 58 GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~l 118 (129)
....|+..||- |..-+|.+|+.||..|+|+..+..|-.+++.....+
T Consensus 30 se~~La~~~gv--------------Sr~tVr~Al~~L~~~Gli~~~~g~G~~V~~~~~~~~ 76 (129)
T 2ek5_A 30 STNELAAFHRI--------------NPATARNGLTLLVEAGILYKKRGIGMFVSAQAPALI 76 (129)
T ss_dssp CHHHHHHHTTC--------------CHHHHHHHHHHHHTTTSEEEETTTEEEECTTHHHHH
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEecCCEEEEecCchHhh
Confidence 56678887765 346899999999999999998888999998765554
No 102
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=93.81 E-value=0.063 Score=41.13 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=49.4
Q ss_pred HHhHHHHHHHHHHhC------CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcch
Q 033029 41 YVRAASMARKIYLRQ------GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSG 114 (129)
Q Consensus 41 Y~R~ASilR~lYl~g------~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G 114 (129)
+-.++..+|.-=+.| .+....|+..||- |..-+|.+|+.||..|||+..+..|-.+++-.
T Consensus 30 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgV--------------SRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~ 95 (239)
T 2hs5_A 30 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDV--------------SRNTVREAFQILIEDRLVAHELNRGVFVRVPT 95 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCeeEEeCCC
Confidence 344444555444444 2456778888875 45689999999999999999988899999887
Q ss_pred HhhHHHH
Q 033029 115 QRDLDQV 121 (129)
Q Consensus 115 ~~~lD~i 121 (129)
..++..+
T Consensus 96 ~~~~~el 102 (239)
T 2hs5_A 96 AEDITEL 102 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 103
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=93.76 E-value=0.087 Score=36.90 Aligned_cols=69 Identities=25% Similarity=0.279 Sum_probs=45.6
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC---CCC-----ceeCcchHhhH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP---KGG-----RRITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~---~~G-----R~lT~~G~~~l 118 (129)
||--|. .+|.---.|.+.... .| +..-+-+.+-.+|+.||+.|||+... .+| -.||++|+..|
T Consensus 18 IL~lL~-~~p~~Gyei~~~l~~---~g-----~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l 88 (116)
T 3hhh_A 18 VLAIIQ-RKETYGYEITKILND---QG-----FTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAEL 88 (116)
T ss_dssp HHHHHH-HSCBCHHHHHHHHHT---TS-----CSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHH
T ss_pred HHHHHh-cCCCCHHHHHHHHHH---cC-----CCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence 555554 456533455555543 22 33556678999999999999998642 234 25999999999
Q ss_pred HHHHHH
Q 033029 119 DQVAGR 124 (129)
Q Consensus 119 D~iA~~ 124 (129)
.....+
T Consensus 89 ~~~~~~ 94 (116)
T 3hhh_A 89 ADFWQR 94 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886654
No 104
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=93.75 E-value=0.18 Score=39.64 Aligned_cols=64 Identities=13% Similarity=0.245 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC-CCceeCcchHhhHHH
Q 033029 43 RAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK-GGRRITSSGQRDLDQ 120 (129)
Q Consensus 43 R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~-~GR~lT~~G~~~lD~ 120 (129)
....||..|.-++++.+..|+...|- +.+-+.+.|+.||+.|||++... ..-.||++|+.....
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lgl--------------sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~ 217 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDK--------------SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKL 217 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHH
Confidence 35568888888999999999999874 34578889999999999998642 346899999997654
No 105
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=93.74 E-value=0.11 Score=36.77 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=40.7
Q ss_pred HHHHHHHHhC-----CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec-CCCCc----eeCcchH
Q 033029 46 SMARKIYLRQ-----GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-PKGGR----RITSSGQ 115 (129)
Q Consensus 46 SilR~lYl~g-----~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~-~~~GR----~lT~~G~ 115 (129)
++|..|+..+ ++.++.|....|-. .+-+=.+++.||+.|||+.. +..+| .||++|+
T Consensus 37 ~vL~~l~~~~~~~~~~~t~~eLa~~l~~~--------------~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~ 102 (148)
T 4fx0_A 37 STLAVISLSEGSAGIDLTMSELAARIGVE--------------RTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGR 102 (148)
T ss_dssp HHHHHHHC---------CHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSBC-----------CCBCHHHH
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHCCC--------------hhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHH
Confidence 3677777653 46778888876542 23566789999999999643 23344 5899999
Q ss_pred hhHHHHHH
Q 033029 116 RDLDQVAG 123 (129)
Q Consensus 116 ~~lD~iA~ 123 (129)
..++++..
T Consensus 103 ~~~~~~~~ 110 (148)
T 4fx0_A 103 AALQKAVP 110 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 106
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=93.68 E-value=0.12 Score=37.53 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCc----eeCcchHhhHHH
Q 033029 45 ASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 45 ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR----~lT~~G~~~lD~ 120 (129)
..||+.|. +++..++.|....|- |.+-+.+-|+.||++|||+...+ || .||++|...+-.
T Consensus 61 ~~IL~~L~-~~~~t~~eLa~~lgl--------------s~stvs~hL~~L~~aGlV~~~~~-Gr~~~y~lt~~~~~~l~~ 124 (151)
T 3f6v_A 61 RRLVQLLT-SGEQTVNNLAAHFPA--------------SRSAISQHLRVLTEAGLVTPRKD-GRFRYYRLDPQGLAQLRA 124 (151)
T ss_dssp HHHHHHGG-GCCEEHHHHHTTSSS--------------CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEec-CCEEEEEEChHHHHHHHH
Confidence 35888887 899999999997654 34688999999999999997653 53 699999877766
Q ss_pred HHHH
Q 033029 121 VAGR 124 (129)
Q Consensus 121 iA~~ 124 (129)
+..+
T Consensus 125 ~l~~ 128 (151)
T 3f6v_A 125 LFDS 128 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 107
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=93.63 E-value=0.075 Score=40.80 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=42.7
Q ss_pred CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHH
Q 033029 56 GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 121 (129)
Q Consensus 56 ~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~i 121 (129)
.+....|+..||- |..-+|.+|+.||..|+|+..+.+|-.+++-...++..+
T Consensus 49 ~L~e~~La~~lgV--------------Sr~~VReAL~~L~~~Glv~~~~~~G~~V~~~~~~~~~~~ 100 (237)
T 3c7j_A 49 ALRQQELATLFGV--------------SRMPVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDA 100 (237)
T ss_dssp BCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCCHHHHHHHH
T ss_pred eeCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCceEEecCCHHHHHHH
Confidence 4677888888875 456899999999999999999888999998877665543
No 108
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=93.60 E-value=0.1 Score=36.53 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=33.5
Q ss_pred CCchhHHHHHHHHHHhCCceeecC---CCC-----ceeCcchHhhHHHHHHH
Q 033029 81 KSSGAIARHILQQLQNMNIIDIEP---KGG-----RRITSSGQRDLDQVAGR 124 (129)
Q Consensus 81 ~asg~iiR~~lqqLE~~g~vek~~---~~G-----R~lT~~G~~~lD~iA~~ 124 (129)
.-|-+.+-.+|+.||+.|||+... .+| -.||++|+..|......
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~ 92 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKK 92 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHH
Confidence 456678999999999999998643 234 25999999999886554
No 109
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=93.39 E-value=0.06 Score=37.25 Aligned_cols=71 Identities=13% Similarity=0.034 Sum_probs=46.8
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCch-hHHHHHHHHHHhCCceeecCC--CC-----ceeCcchHhhH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSG-AIARHILQQLQNMNIIDIEPK--GG-----RRITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg-~iiR~~lqqLE~~g~vek~~~--~G-----R~lT~~G~~~l 118 (129)
||.-|. .+|.-...|.+.... .|.-. + .-+- +.+-.+|+.||+.|||+.... .| -.||++|+..+
T Consensus 18 IL~~L~-~~~~~gyel~~~l~~---~g~~~--~-~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l 90 (118)
T 2esh_A 18 ILLLVA-EKPSHGYELAERLAE---FGIEI--P-GIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYL 90 (118)
T ss_dssp HHHHHH-HSCBCHHHHHHHHHT---TCCSS--T-TCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHH---hCCcc--c-CCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHH
Confidence 666664 367666666666643 22110 1 1344 568889999999999986531 23 27999999999
Q ss_pred HHHHHH
Q 033029 119 DQVAGR 124 (129)
Q Consensus 119 D~iA~~ 124 (129)
......
T Consensus 91 ~~~~~~ 96 (118)
T 2esh_A 91 REILRS 96 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886554
No 110
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=93.30 E-value=0.42 Score=32.09 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHH-hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHH
Q 033029 13 HEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 91 (129)
Q Consensus 13 ~~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~l 91 (129)
..|...+.+.++..| +.|. -..++.-|++ .+|+.+..|+...|- +.+-+..+|
T Consensus 9 ~~~~~~~~~~~~~~g----l~~~--------~~~il~~L~~~~~~~t~~ela~~l~~--------------~~stvs~~l 62 (152)
T 1ku9_A 9 KLIIELFSELAKIHG----LNKS--------VGAVYAILYLSDKPLTISDIMEELKI--------------SKGNVSMSL 62 (152)
T ss_dssp HHHHHHHHHHHHHTT----CCHH--------HHHHHHHHHHCSSCEEHHHHHHHHTC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----CChh--------HHHHHHHHHHcCCCCCHHHHHHHHCc--------------CHHHHHHHH
Confidence 456677777777654 3332 2346666675 689999999999874 335788899
Q ss_pred HHHHhCCceeecC--CC--CceeCcchHhhHHHHH
Q 033029 92 QQLQNMNIIDIEP--KG--GRRITSSGQRDLDQVA 122 (129)
Q Consensus 92 qqLE~~g~vek~~--~~--GR~lT~~G~~~lD~iA 122 (129)
+.||+.|||+..+ .. ...++..|...+..+.
T Consensus 63 ~~L~~~G~v~r~~~~~d~r~~~~~~~~~~~~~~~~ 97 (152)
T 1ku9_A 63 KKLEELGFVRKVWIKGERKNYYEAVDGFSSIKDIA 97 (152)
T ss_dssp HHHHHTTSEEEECCTTCSSCEEEECCHHHHHHHHH
T ss_pred HHHHHCCCEEEEecCCCceEEEeecchHHHHHHHH
Confidence 9999999999763 22 3467777765555444
No 111
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=93.15 E-value=0.1 Score=34.86 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=35.5
Q ss_pred chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcch
Q 033029 58 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSG 114 (129)
Q Consensus 58 GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G 114 (129)
.+..|+..||-. .+.+|.+|+.||+.|+|+..+..|..+++..
T Consensus 37 s~~eLa~~~~vS--------------r~tvr~al~~L~~~Gli~~~~g~G~~v~~~~ 79 (102)
T 1v4r_A 37 SVADIRAQFGVA--------------AKTVSRALAVLKSEGLVSSRGALGTVVEKNP 79 (102)
T ss_dssp CHHHHHHHSSSC--------------TTHHHHHTTTTTTSSCCEEETTTEEESCSCC
T ss_pred CHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEeCCCeEEEccCC
Confidence 678888888753 3589999999999999998887788887654
No 112
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=93.05 E-value=0.14 Score=35.59 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=35.1
Q ss_pred CCchhHHHHHHHHHHhCCceeecC----CCC-----ceeCcchHhhHHHHHHHh
Q 033029 81 KSSGAIARHILQQLQNMNIIDIEP----KGG-----RRITSSGQRDLDQVAGRI 125 (129)
Q Consensus 81 ~asg~iiR~~lqqLE~~g~vek~~----~~G-----R~lT~~G~~~lD~iA~~i 125 (129)
..|-+.|-.+|+.||+.|||+... .+| -.||++|+..+.....+.
T Consensus 53 ~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~ 106 (115)
T 2dql_A 53 RLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARLW 106 (115)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 456678899999999999998642 124 379999999998876553
No 113
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=92.88 E-value=0.26 Score=33.67 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=49.0
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCC---CceeCcchHhhHHHHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG---GRRITSSGQRDLDQVA 122 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~---GR~lT~~G~~~lD~iA 122 (129)
.|++.|. +||+.++.|....|- |.+-+.+-|+.||+.|+|+....| --.||+.|...+....
T Consensus 22 ~Il~~L~-~~~~~~~eLa~~l~i--------------s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~ 86 (118)
T 3f6o_A 22 AVLGRLS-RGPATVSELAKPFDM--------------ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWL 86 (118)
T ss_dssp HHHHHHH-TCCEEHHHHHTTCCS--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHH
Confidence 3788887 899999999987643 345788999999999999876542 2368999988776554
Q ss_pred HH
Q 033029 123 GR 124 (129)
Q Consensus 123 ~~ 124 (129)
..
T Consensus 87 ~~ 88 (118)
T 3f6o_A 87 AE 88 (118)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 114
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=92.82 E-value=0.54 Score=35.98 Aligned_cols=60 Identities=10% Similarity=-0.047 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHHhC-CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchH
Q 033029 42 VRAASMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQ 115 (129)
Q Consensus 42 ~R~ASilR~lYl~g-~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~ 115 (129)
-|+..||..|.-.+ ++++..|....|- +.+-+.++|+.||+.|||+++.++.-.|+++..
T Consensus 8 ~r~l~iL~~l~~~~~~~~~~ela~~~gl--------------~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~ 68 (249)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKFNM--------------SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECTHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEECCCCcEEECHHHH
Confidence 47888999887765 7999999998754 336788999999999999988545678888654
No 115
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=92.74 E-value=0.53 Score=32.39 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCc----eeCcchHhhHHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR----~lT~~G~~~lD~ 120 (129)
.|+..|.-+++..+..|....|- |.+-+.+.|+.||+.|+|+...+ || .||+.+...+-.
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~i--------------s~stvs~~L~~L~~~Glv~~~~~-gr~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGV--------------TIANASHHLRTLYKQGVVNFRKE-GKLALYSLGDEHIRQIMM 109 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEC-----CCEEEESCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEE-CCEEEEEECHHHHHHHHH
Confidence 47777766799999999998764 33578899999999999998754 54 688887554433
No 116
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=92.74 E-value=0.31 Score=32.31 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHh------CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCcee
Q 033029 43 RAASMARKIYLR------QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRI 110 (129)
Q Consensus 43 R~ASilR~lYl~------g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~l 110 (129)
|...|+--|--. +|+.|..++..+|= |-+-||+-|..||+.|+|+.+. +||.+
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv--------------S~~TVrr~L~~Le~kG~I~R~~-ggr~~ 63 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGL--------------SIYQVRLYLEQLHDVGVLEKVN-AGKGV 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEES-CSSSS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEecC-CCCCc
Confidence 455566666666 89999999998874 2346999999999999999987 56654
No 117
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=92.71 E-value=0.088 Score=37.10 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=45.1
Q ss_pred HHHhHHHHHHHHHHhCC------C-chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCc
Q 033029 40 YYVRAASMARKIYLRQG------L-GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITS 112 (129)
Q Consensus 40 ~Y~R~ASilR~lYl~g~------v-GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~ 112 (129)
.|...+.-+|.-=+.|- + .+..|+..||- |..-+|.+|++||..|+|+..+..|-.+++
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gV--------------Sr~tVReAl~~L~~eGlv~~~~g~G~~V~~ 80 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGV--------------NPNTVSKAYQELERQEVIITVKGKGTFIAN 80 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEEcCcEEEEeC
Confidence 46666666666655552 2 45678888875 346899999999999999998877887776
Q ss_pred ch
Q 033029 113 SG 114 (129)
Q Consensus 113 ~G 114 (129)
..
T Consensus 81 ~~ 82 (134)
T 4ham_A 81 QT 82 (134)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 118
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=92.69 E-value=0.26 Score=33.19 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCC
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG 106 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~ 106 (129)
||..|+-++|+.+..|....+-. +|. +.+-+-.+|+.||+.|||+..+++
T Consensus 15 vL~~L~~~~~~t~~el~~~l~~~--~~~--------~~~Tvt~~l~rLe~kGlv~R~~~~ 64 (126)
T 1sd4_A 15 VMNIIWDKKSVSANEIVVEIQKY--KEV--------SDKTIRTLITRLYKKEIIKRYKSE 64 (126)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHTT--SCC--------CHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHhcCCCCHHHHHHHHhhc--CCC--------ChhhHHHHHHHHHHCCceEEEeCC
Confidence 77888889999999999998742 232 235788999999999999987653
No 119
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=92.49 E-value=0.16 Score=34.32 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHH
Q 033029 11 SPHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHI 90 (129)
Q Consensus 11 ~~~~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~ 90 (129)
+.++..+.++..+|--+ || +| ..|+..|. .|++.+..|....|- |.+-+.+.
T Consensus 7 ~~~~~~~~~~~~~~al~--------~~----~r-~~IL~~L~-~~~~s~~eLa~~lgi--------------s~stvs~~ 58 (108)
T 2kko_A 7 RKAALLDQVARVGKALA--------NG----RR-LQILDLLA-QGERAVEAIATATGM--------------NLTTASAN 58 (108)
T ss_dssp THHHHHHHHHHHHHHHT--------TS----TT-HHHHHHHT-TCCEEHHHHHHHHTC--------------CHHHHHHH
T ss_pred cChhhHHHHHHHHHHhC--------CH----HH-HHHHHHHH-cCCcCHHHHHHHHCc--------------CHHHHHHH
Confidence 34566777888888653 44 22 24777665 699999999998764 23588999
Q ss_pred HHHHHhCCceeecCCCCc----eeCcchHhhHHH
Q 033029 91 LQQLQNMNIIDIEPKGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 91 lqqLE~~g~vek~~~~GR----~lT~~G~~~lD~ 120 (129)
|+.||+.|+|+...+ || .||+++...+=+
T Consensus 59 L~~L~~~GlV~~~~~-gr~~~y~l~~~~~~~l~~ 91 (108)
T 2kko_A 59 LQALKSGGLVEARRE-GTRQYYRIAGEDVARLFA 91 (108)
T ss_dssp HHHHHHHTSEEEEEE-TTEEEEEESCHHHHHHHH
T ss_pred HHHHHHCCCeEEEEe-CCEEEEEEChHHHHHHHH
Confidence 999999999987654 44 689888655433
No 120
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=92.43 E-value=0.65 Score=30.92 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHH
Q 033029 13 HEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQ 92 (129)
Q Consensus 13 ~~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lq 92 (129)
++-.+.++..++--+ || +| ..|+..|. +++..++.|....|- |.+-+.+.|+
T Consensus 10 ~~~~~~~~~~~~~l~--------~~----~r-~~IL~~L~-~~~~~~~ela~~l~i--------------s~stvs~~L~ 61 (106)
T 1r1u_A 10 TDTLERVTEIFKALG--------DY----NR-IRIMELLS-VSEASVGHISHQLNL--------------SQSNVSHQLK 61 (106)
T ss_dssp HHHHHHHHHHHHHTC--------SH----HH-HHHHHHHH-HCCBCHHHHHHHHTC--------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--------CH----HH-HHHHHHHH-hCCCCHHHHHHHHCc--------------CHHHHHHHHH
Confidence 444566777777542 43 22 35787777 899999999998764 2357899999
Q ss_pred HHHhCCceeecCCCCc----eeCcchHhhH
Q 033029 93 QLQNMNIIDIEPKGGR----RITSSGQRDL 118 (129)
Q Consensus 93 qLE~~g~vek~~~~GR----~lT~~G~~~l 118 (129)
.||+.|+|+...+ || .||+.+-..+
T Consensus 62 ~L~~~Glv~~~~~-gr~~~y~l~~~~~~~~ 90 (106)
T 1r1u_A 62 LLKSVHLVKAKRQ-GQSMIYSLDDIHVATM 90 (106)
T ss_dssp HHHHTTSEEEEEE-TTEEEEEESSHHHHHH
T ss_pred HHHHCCCeEEEEe-CCEEEEEEChHHHHHH
Confidence 9999999987654 44 5787775433
No 121
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=92.28 E-value=0.14 Score=37.11 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=35.6
Q ss_pred cCCchhHHHHHHHHHHhCCceeecC----CCC-----ceeCcchHhhHHHHHHHh
Q 033029 80 CKSSGAIARHILQQLQNMNIIDIEP----KGG-----RRITSSGQRDLDQVAGRI 125 (129)
Q Consensus 80 ~~asg~iiR~~lqqLE~~g~vek~~----~~G-----R~lT~~G~~~lD~iA~~i 125 (129)
..-+-+.|-.+|+.||+.|||+... .+| -.||++|+..+.....+.
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~~ 118 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLW 118 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 3556678999999999999998642 134 379999999998876553
No 122
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=92.26 E-value=0.19 Score=32.21 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~ 104 (129)
.|+..|.-.+++.+..|+..+|- |.+-+|+.|+.||+.|+|+...
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgv--------------s~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAV--------------TDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEec
Confidence 46777776789999999999865 3357999999999999998543
No 123
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=92.20 E-value=0.26 Score=34.42 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=43.4
Q ss_pred HHHHHHHH-hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCc------eeCcchH
Q 033029 46 SMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR------RITSSGQ 115 (129)
Q Consensus 46 SilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR------~lT~~G~ 115 (129)
.||..|+- .+|+.+..|....+.. ++. +.+-+-.+|+.||+.|||+..++ || .||++|.
T Consensus 13 ~vL~~L~~~~~~~t~~el~~~l~~~--~~~--------~~~Tvt~~l~rLe~kGlv~r~~~-~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 13 AVMDHLWSRTEPQTVRQVHEALSAR--RDL--------AYTTVMAVLQRLAKKNLVLQIRD-DRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHTCSSCEEHHHHHHHHTTT--CCC--------CHHHHHHHHHHHHHTTSEEEEC----CCEEEESSCHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHhcc--CCC--------CHHHHHHHHHHHHHCCCEEEEec-CCeEEEEeCCCHHHH
Confidence 37777887 5999999999998753 232 23578889999999999998765 44 2677774
No 124
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.93 E-value=0.89 Score=29.03 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=35.4
Q ss_pred HHHHHHH-hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC
Q 033029 47 MARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 47 ilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~ 104 (129)
++..++- .+++.+..|...+|- |.+-++.+|+.||+.|+|+...
T Consensus 26 ~l~~l~~~~~~~t~~ela~~l~i--------------s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 26 VLLKMVEIEKPITSEELADIFKL--------------SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEeec
Confidence 5555555 789999999998863 3467999999999999998754
No 125
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=91.90 E-value=0.097 Score=39.63 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=35.9
Q ss_pred hhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceee--cCC--CCceeCcchHh
Q 033029 59 VGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI--EPK--GGRRITSSGQR 116 (129)
Q Consensus 59 V~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek--~~~--~GR~lT~~G~~ 116 (129)
-..|+..||- |..-+|.+|+.||..|+|+. .+. +|-.+++-...
T Consensus 31 E~~La~~lgV--------------SRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~~~ 78 (239)
T 2di3_A 31 ERALSETLGV--------------SRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQ 78 (239)
T ss_dssp HHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCCCCS
T ss_pred HHHHHHHHCC--------------CHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCCcch
Confidence 4478888865 45689999999999999999 887 78888876554
No 126
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=91.90 E-value=0.32 Score=34.78 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=42.2
Q ss_pred HHHHHHHHHHh--CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC-CCCceeCcchH
Q 033029 44 AASMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP-KGGRRITSSGQ 115 (129)
Q Consensus 44 ~ASilR~lYl~--g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~-~~GR~lT~~G~ 115 (129)
|-.+|-.|..+ +++.+..++..+|-. -+.++++|++|.++|||+... .||-.|+....
T Consensus 16 Al~~L~~La~~~~~~~~~~~iA~~~~i~--------------~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p~ 76 (149)
T 1ylf_A 16 AVHILSILKNNPSSLCTSDYMAESVNTN--------------PVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLH 76 (149)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEC---CCEEESSCGG
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCcEEEccCCCceEeCCChh
Confidence 44455555553 468888999887653 358999999999999998654 57888887643
No 127
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=91.80 E-value=0.42 Score=37.41 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhCCceeecC--CCCc----eeCcchHhhHHHHHHHh
Q 033029 85 AIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDLDQVAGRI 125 (129)
Q Consensus 85 ~iiR~~lqqLE~~g~vek~~--~~GR----~lT~~G~~~lD~iA~~i 125 (129)
+-+=.+++.||+.|||++.+ +.+| .||++|+..++++...+
T Consensus 189 ~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~ 235 (250)
T 1p4x_A 189 PQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLAQV 235 (250)
T ss_dssp HHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHHHHHH
Confidence 45566899999999998654 4455 38999999999886654
No 128
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=91.45 E-value=0.28 Score=34.76 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=33.8
Q ss_pred CCchhHHHHHHHHHHhCCceeecC--CCC-----ceeCcchHhhHHHHHHHh
Q 033029 81 KSSGAIARHILQQLQNMNIIDIEP--KGG-----RRITSSGQRDLDQVAGRI 125 (129)
Q Consensus 81 ~asg~iiR~~lqqLE~~g~vek~~--~~G-----R~lT~~G~~~lD~iA~~i 125 (129)
.-+-+.|=.+|+.||+.|||+... .+| -.||++|+..|.......
T Consensus 49 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~~ 100 (123)
T 3ri2_A 49 PIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQW 100 (123)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 445567888999999999998642 122 249999999998876553
No 129
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=91.40 E-value=0.19 Score=37.04 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=34.6
Q ss_pred CCchhHHHHHHHHHHhCCceeecC----CCC-----ceeCcchHhhHHHHHHHh
Q 033029 81 KSSGAIARHILQQLQNMNIIDIEP----KGG-----RRITSSGQRDLDQVAGRI 125 (129)
Q Consensus 81 ~asg~iiR~~lqqLE~~g~vek~~----~~G-----R~lT~~G~~~lD~iA~~i 125 (129)
.-+-+.|-.+|+.||+.|||+... .+| -.||++|+..|.....+.
T Consensus 75 ~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~~ 128 (148)
T 2zfw_A 75 RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLW 128 (148)
T ss_dssp ECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 445578899999999999998643 124 379999999988776543
No 130
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=91.21 E-value=0.24 Score=37.05 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=43.6
Q ss_pred HHHHHHHHh--CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC------CCCc-----eeCc
Q 033029 46 SMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP------KGGR-----RITS 112 (129)
Q Consensus 46 SilR~lYl~--g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~------~~GR-----~lT~ 112 (129)
+|+..|--+ +...+..|.... ..-|-+-|+.-|+.|+++|+|++.. ..|| .||+
T Consensus 33 ~IL~~Ll~~p~~~~ta~eL~~~l-------------~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~ 99 (151)
T 3u1d_A 33 DVLHQILAQPDGVLSVEELLYRN-------------PDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTG 99 (151)
T ss_dssp HHHHHHHHSTTSCBCHHHHHHHC-------------TTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECH
T ss_pred HHHHHHHcCCCCCCCHHHHHHhc-------------CCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECH
Confidence 456655554 235666665432 1246689999999999999999642 1255 8999
Q ss_pred chHhhHHH
Q 033029 113 SGQRDLDQ 120 (129)
Q Consensus 113 ~G~~~lD~ 120 (129)
+|+..|+.
T Consensus 100 ~Gr~~l~~ 107 (151)
T 3u1d_A 100 EGIALLRA 107 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 131
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=91.21 E-value=0.22 Score=37.63 Aligned_cols=73 Identities=18% Similarity=0.069 Sum_probs=50.1
Q ss_pred chHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC---CCCceeCcch
Q 033029 38 DWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP---KGGRRITSSG 114 (129)
Q Consensus 38 DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~---~~GR~lT~~G 114 (129)
.|-+.++-+....++-.+++.+..++...|-. .+-+=+.+++||+.|||+... ..+=.||++|
T Consensus 9 ~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~is--------------q~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G 74 (230)
T 3cta_A 9 YYRAIKKIKEAAEASNRAYLTSSKLADMLGIS--------------QQSASRIIIDLEKNGYITRTVTKRGQILNITEKG 74 (230)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHH
Confidence 34444444444444444557788888876543 346677889999999999873 2355799999
Q ss_pred HhhHHHHHHH
Q 033029 115 QRDLDQVAGR 124 (129)
Q Consensus 115 ~~~lD~iA~~ 124 (129)
+..++.+...
T Consensus 75 ~~l~~~~~~~ 84 (230)
T 3cta_A 75 LDVLYTEFAD 84 (230)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 132
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=91.19 E-value=1 Score=32.32 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=55.7
Q ss_pred HHHHHHHH-hCCCchhhhHHHhcccCCCCCCCCccc--------CCchhHHHHHHHHHHhCCceeecCCC----C-ceeC
Q 033029 46 SMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFC--------KSSGAIARHILQQLQNMNIIDIEPKG----G-RRIT 111 (129)
Q Consensus 46 SilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~--------~asg~iiR~~lqqLE~~g~vek~~~~----G-R~lT 111 (129)
.+|..||- .+..|++.+..+.=|+++.-+.-.|.. .=+-.-++.++.||...|+++.+... + =.||
T Consensus 20 kiLs~V~r~~~rfG~~~iidvLrGs~~~ki~~~~~~l~tfGigk~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L~Lt 99 (134)
T 3aaf_A 20 KLLSAVDILGEKFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKICALT 99 (134)
T ss_dssp HHHHHHHHTTTCSCTHHHHHHHTTCCCTTSCGGGGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEEEEC
T ss_pred HHHHHHHHHcCcccccchhhhhcCCcHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHcCCceeecCcCccCceEEEC
Confidence 35555553 678999999999988887665442111 12335699999999999999876533 2 6899
Q ss_pred cchHhhHHHHH
Q 033029 112 SSGQRDLDQVA 122 (129)
Q Consensus 112 ~~G~~~lD~iA 122 (129)
++|+..|..--
T Consensus 100 ~~g~~vL~~~~ 110 (134)
T 3aaf_A 100 KKGRNWLHKAN 110 (134)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHhCCc
Confidence 99999987643
No 133
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=91.17 E-value=0.16 Score=39.07 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=45.5
Q ss_pred hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC---CCC-----ceeCcchHhhHHHHHHH
Q 033029 54 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP---KGG-----RRITSSGQRDLDQVAGR 124 (129)
Q Consensus 54 ~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~---~~G-----R~lT~~G~~~lD~iA~~ 124 (129)
.+|.---.|.+.+...- .++...|-+-|-.+|+.||+.|||+... .+| -.||++|+..|.+...+
T Consensus 47 ~~p~~GYeL~~~l~~~~------~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~ 119 (204)
T 3l9f_A 47 KKERSGYEINDILQNQL------SYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQS 119 (204)
T ss_dssp SCCEEHHHHHHHHHHTS------TTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHh------CCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhc
Confidence 46655556666665431 2345566678999999999999998542 233 26999999999876554
No 134
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=91.15 E-value=0.24 Score=37.98 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=47.4
Q ss_pred HhHHHHHHHHHHhC-CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC-CCceeCcch
Q 033029 42 VRAASMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK-GGRRITSSG 114 (129)
Q Consensus 42 ~R~ASilR~lYl~g-~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~-~GR~lT~~G 114 (129)
-|+..||+.|.-.+ ++++..|....|- +.+-+.++|+.||+.|||+++++ +.-.|+++.
T Consensus 6 ~r~l~iL~~l~~~~~~~s~~ela~~~gl--------------~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~ 66 (241)
T 2xrn_A 6 ARAASIMRALGSHPHGLSLAAIAQLVGL--------------PRSTVQRIINALEEEFLVEALGPAGGFRLGPAL 66 (241)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHTTS--------------CHHHHHHHHHHHHTTTSEEECGGGCEEEECSHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHH
Confidence 47889999887664 7999999998754 34689999999999999999864 456777764
No 135
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=91.02 E-value=0.56 Score=32.08 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCc----eeCcchHh
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQR 116 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR----~lT~~G~~ 116 (129)
.|++.|. .++..+..|....|- |.+-+.+.|+.||+.|+|+...+ || .||+.+-.
T Consensus 25 ~IL~~L~-~~~~~~~eLa~~lgi--------------s~stvs~~L~~L~~~GlV~~~~~-gr~~~y~l~~~~~~ 83 (118)
T 2jsc_A 25 RILVALL-DGVCYPGQLAAHLGL--------------TRSNVSNHLSCLRGCGLVVATYE-GRQVRYALADSHLA 83 (118)
T ss_dssp HHHHHHH-TTCCSTTTHHHHHSS--------------CHHHHHHHHHHHTTTTSEEEEEC-SSSEEEEESSHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCceEEEEE-CCEEEEEEChHHHH
Confidence 5788776 789999999998753 34689999999999999987654 44 57887643
No 136
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=90.97 E-value=0.14 Score=35.79 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=42.0
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC---CCC-----ceeCcchHhhH
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP---KGG-----RRITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~---~~G-----R~lT~~G~~~l 118 (129)
||--|. .+|.---.|.+.....-... -+-+.+-.+|+.||+.|||+... .+| -.||++|+..|
T Consensus 19 IL~lL~-~~p~~gyel~~~l~~~~~~~--------i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l 89 (117)
T 3elk_A 19 ILKELV-KRPMHGYELQKSMFETTGQA--------LPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFL 89 (117)
T ss_dssp HHHHHH-HSCEEHHHHHHHHHHHHSCC--------CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHHHhCCC--------CCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence 555444 46654445555544321111 12268899999999999998543 223 24999999999
Q ss_pred HHHH
Q 033029 119 DQVA 122 (129)
Q Consensus 119 D~iA 122 (129)
....
T Consensus 90 ~~~~ 93 (117)
T 3elk_A 90 CDHS 93 (117)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8753
No 137
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=90.94 E-value=0.26 Score=39.76 Aligned_cols=74 Identities=19% Similarity=0.165 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHH---h---CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCC---CceeCc
Q 033029 42 VRAASMARKIYL---R---QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG---GRRITS 112 (129)
Q Consensus 42 ~R~ASilR~lYl---~---g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~---GR~lT~ 112 (129)
+|+-|++-.||- . +.+-++.|-...+.- |+ +...+|.+|.-|++.|||+....| +-.||+
T Consensus 22 ~~a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~~---Gi--------~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~ 90 (266)
T 3l09_A 22 LKLWSVLVTCLGDVSRDGVIEVSGVALSSFVERM---GL--------QPQAMRVALHRLKRDGWVESRRLGRVGFHRLSD 90 (266)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCEEHHHHHHHHHHT---TC--------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred CChhHHHHHHHHHHhccCCCcccHHHHHHHHHHc---CC--------CchHHHHHHHHHHHCCCeeeeecCCcceEEECH
Confidence 788999999993 2 468888877776542 32 346899999999999999977544 578999
Q ss_pred chHhhHHHHHHHhh
Q 033029 113 SGQRDLDQVAGRIV 126 (129)
Q Consensus 113 ~G~~~lD~iA~~i~ 126 (129)
.|+..+++....|.
T Consensus 91 ~g~~~l~~~~~ri~ 104 (266)
T 3l09_A 91 SALTQTRAVAGRIY 104 (266)
T ss_dssp HHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988777665
No 138
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=90.90 E-value=0.32 Score=34.86 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=41.2
Q ss_pred HHHHHHHHh---CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCceeCcchH
Q 033029 46 SMARKIYLR---QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSGQ 115 (129)
Q Consensus 46 SilR~lYl~---g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR~lT~~G~ 115 (129)
.+|-.|..+ +++.+..++..+|- |-..+|++|++|.++|+|+... +||-.|+..-.
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i--------------~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 75 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNL--------------SDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAE 75 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGG
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcc
Confidence 344455543 36888889888765 3358999999999999998654 46888886554
No 139
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=90.67 E-value=0.15 Score=38.19 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=34.8
Q ss_pred chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcc
Q 033029 58 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 113 (129)
Q Consensus 58 GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~ 113 (129)
.-..|+..||- |..-+|.+|+.||..|+|+..+..|-.+++.
T Consensus 33 sE~eLa~~~gV--------------SR~tVReAL~~L~~eGlv~~~~g~G~~V~~~ 74 (239)
T 1hw1_A 33 AERELSELIGV--------------TRTTLREVLQRLARDGWLTIQHGKPTKVNNF 74 (239)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTEEEEECCH
T ss_pred CHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEecCCCcEeeCc
Confidence 46778888875 4568999999999999999988778888763
No 140
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=90.54 E-value=0.39 Score=37.69 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHHhC-CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcc
Q 033029 42 VRAASMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 113 (129)
Q Consensus 42 ~R~ASilR~lYl~g-~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~ 113 (129)
-|+..||..|--.+ ++++..|.+.-|-.+ +-+..+|+.|++.|||++++++...|++.
T Consensus 30 ~Ral~IL~~l~~~~~~ltl~eia~~lgl~k--------------sTv~RlL~tL~~~G~v~~~~~~~Y~LG~~ 88 (275)
T 3mq0_A 30 RRAVRILDLVAGSPRDLTAAELTRFLDLPK--------------SSAHGLLAVMTELDLLARSADGTLRIGPH 88 (275)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCC----------------CHHHHHHHHHHTTSEEECTTSEEEECTH
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEECCCCcEEehHH
Confidence 47888999888754 799999999877532 46889999999999999988655777775
No 141
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=89.83 E-value=0.48 Score=34.78 Aligned_cols=54 Identities=11% Similarity=0.085 Sum_probs=39.9
Q ss_pred HHHHHHHh--CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCceeCcch
Q 033029 47 MARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSG 114 (129)
Q Consensus 47 ilR~lYl~--g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR~lT~~G 114 (129)
+|-.|..+ +++.+..++..+|-. ...+|++|++|.++|||+... .||-.|+..-
T Consensus 17 ~l~~La~~~~~~~s~~~IA~~~~is--------------~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (162)
T 3k69_A 17 SILYLDAHRDSKVASRELAQSLHLN--------------PVMIRNILSVLHKHGYLTGTVGKNGGYQLDLAL 74 (162)
T ss_dssp HHHHHHTTTTSCBCHHHHHHHHTSC--------------GGGTHHHHHHHHHTTSSEEECSTTCEEECCSCG
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEeecCCCCCeEecCCh
Confidence 34444433 468899999988763 248999999999999998654 4678887654
No 142
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=89.73 E-value=1 Score=35.33 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=44.5
Q ss_pred HHHhHHHHHHHHHHhCC------C-chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCc
Q 033029 40 YYVRAASMARKIYLRQG------L-GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITS 112 (129)
Q Consensus 40 ~Y~R~ASilR~lYl~g~------v-GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~ 112 (129)
.|...+..++.--..|- + ....|+..||- |..-+|++|++|++.|+|+..+..|-.+++
T Consensus 30 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 95 (272)
T 3eet_A 30 AYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGV--------------SDTVALEARKVLMAEGLVEGRSGSGTYVRE 95 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECCC--EEECC
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCceEEEec
Confidence 56667777766655553 3 56788998875 456999999999999999998877877775
Q ss_pred c
Q 033029 113 S 113 (129)
Q Consensus 113 ~ 113 (129)
.
T Consensus 96 ~ 96 (272)
T 3eet_A 96 R 96 (272)
T ss_dssp C
T ss_pred C
Confidence 4
No 143
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=89.65 E-value=0.88 Score=31.53 Aligned_cols=75 Identities=21% Similarity=0.369 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHH
Q 033029 11 SPHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHI 90 (129)
Q Consensus 11 ~~~~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~ 90 (129)
+.++.++.++..||--+ || +| ..|++.|. +++..++.|....|- |.+-+.+.
T Consensus 28 ~~~~~~~~~~~~~kaL~--------~~----~r-l~IL~~L~-~~~~s~~ela~~lgi--------------s~stvs~~ 79 (122)
T 1r1t_A 28 IAPEVAQSLAEFFAVLA--------DP----NR-LRLLSLLA-RSELCVGDLAQAIGV--------------SESAVSHQ 79 (122)
T ss_dssp CCHHHHHHHHHHHHHHC--------CH----HH-HHHHHHHT-TCCBCHHHHHHHHTC--------------CHHHHHHH
T ss_pred CCHhHHHHHHHHHHHhC--------CH----HH-HHHHHHHH-cCCCCHHHHHHHHCc--------------CHHHHHHH
Confidence 44567777777777642 33 22 24777775 689999999998764 33588899
Q ss_pred HHHHHhCCceeecCCCCc----eeCcch
Q 033029 91 LQQLQNMNIIDIEPKGGR----RITSSG 114 (129)
Q Consensus 91 lqqLE~~g~vek~~~~GR----~lT~~G 114 (129)
|+.||+.|+|....+ || .||+++
T Consensus 80 L~~Le~~Glv~~~~~-gr~~~y~l~~~~ 106 (122)
T 1r1t_A 80 LRSLRNLRLVSYRKQ-GRHVYYQLQDHH 106 (122)
T ss_dssp HHHHHHTTSEEEEEE-TTEEEEEESSHH
T ss_pred HHHHHHCCCeEEEEe-CCEEEEEEChHH
Confidence 999999999987653 43 355554
No 144
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=89.55 E-value=0.27 Score=31.27 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCc
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR 108 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR 108 (129)
||.-|+-.+++.+..|....+-. .+. +.+-+..+|+.||+.|+|+...+ ||
T Consensus 14 vL~~L~~~~~~t~~ei~~~l~~~--~~~--------s~~Tv~~~l~rL~~kGlv~r~~~-gr 64 (82)
T 1p6r_A 14 VMKVIWKHSSINTNEVIKELSKT--STW--------SPKTIQTMLLRLIKKGALNHHKE-GR 64 (82)
T ss_dssp HHHHHHTSSSEEHHHHHHHHHHH--SCC--------CHHHHHHHHHHHHHTTSEEEEEE-TT
T ss_pred HHHHHHcCCCCCHHHHHHHHhhc--CCc--------cHHHHHHHHHHHHHCCCeEEEec-CC
Confidence 66667778999999999998752 222 34678999999999999998764 44
No 145
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=89.01 E-value=1.1 Score=34.65 Aligned_cols=60 Identities=3% Similarity=-0.011 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHH-hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchH
Q 033029 42 VRAASMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQ 115 (129)
Q Consensus 42 ~R~ASilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~ 115 (129)
-|+..||+.|.- .+++++..|....|-. .+-+.++|+.||+.|||++++++...|+++.-
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~--------------kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKLP--------------KTTVVRLVATMCARSVLTSRADGSYSLGPEML 83 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCCC--------------HHHHHHHHHHHHHTTSEEECTTSCEEECHHHH
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEECCCCeEEecHHHH
Confidence 477788887753 5689999999987652 36788999999999999998755567877643
No 146
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=88.73 E-value=1.2 Score=34.03 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=43.1
Q ss_pred HHhHHHHHHHHHHhCC------C-chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcc
Q 033029 41 YVRAASMARKIYLRQG------L-GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 113 (129)
Q Consensus 41 Y~R~ASilR~lYl~g~------v-GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~ 113 (129)
|...+..++.-=..|- + ....|+..||- |..-+|++|+.|++.|+|+..+..|-.+++.
T Consensus 11 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 76 (236)
T 3edp_A 11 FEVIASKIKDSINRDEYKTGMLMPNETALQEIYSS--------------SRTTIRRAVDLLVEEGLVVRKNGVGLYVQPK 76 (236)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEECCceEEEccC
Confidence 4555555555545442 3 56778888765 4568999999999999999988778888764
No 147
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=88.69 E-value=1.1 Score=29.91 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHH
Q 033029 12 PHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHIL 91 (129)
Q Consensus 12 ~~~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~l 91 (129)
.+..++.++..+|--. |+.+ ..|+..|+- ++..+..+....|- +.+-+.+.|
T Consensus 15 ~~~~~~~~~~~~~~l~--------~~~~-----~~il~~L~~-~~~s~~ela~~l~i--------------s~stvsr~l 66 (119)
T 2lkp_A 15 DSQAAAQVASTLQALA--------TPSR-----LMILTQLRN-GPLPVTDLAEAIGM--------------EQSAVSHQL 66 (119)
T ss_dssp HHHHHHHHHHHHHHHC--------CHHH-----HHHHHHHHH-CCCCHHHHHHHHSS--------------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--------CHHH-----HHHHHHHHH-CCCCHHHHHHHHCc--------------CHHHHHHHH
Confidence 3566777888888652 3322 236666664 78999999998754 335888999
Q ss_pred HHHHhCCceeecCC-CCceeCcchHhhHHH
Q 033029 92 QQLQNMNIIDIEPK-GGRRITSSGQRDLDQ 120 (129)
Q Consensus 92 qqLE~~g~vek~~~-~GR~lT~~G~~~lD~ 120 (129)
+.||+.|+|....+ .+..+|..|...+..
T Consensus 67 ~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~ 96 (119)
T 2lkp_A 67 RVLRNLGLVVGDRAGRSIVYSLYDTHVAQL 96 (119)
T ss_dssp HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHCCCEEEEecCCEEEEEEchHHHHHH
Confidence 99999999987643 234677777655443
No 148
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=88.16 E-value=0.84 Score=33.63 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=36.6
Q ss_pred CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC--CCCceeCcch
Q 033029 55 QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSG 114 (129)
Q Consensus 55 g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~--~~GR~lT~~G 114 (129)
+++.+..++..+|- |-..+|++|++|.++|+|+... .||-.|+..-
T Consensus 43 ~~~s~~eIA~~~~i--------------~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 43 GPISLRSIAQDKNL--------------SEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp CCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred CCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 47888889888765 3369999999999999998654 4688887654
No 149
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=88.13 E-value=0.47 Score=36.75 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=46.9
Q ss_pred HhHHHHHHHHHH-hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC-CCceeCcc
Q 033029 42 VRAASMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK-GGRRITSS 113 (129)
Q Consensus 42 ~R~ASilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~-~GR~lT~~ 113 (129)
-|+..||+.|-- .+++++..|...-|-. .+-+.++|+.|++.|||+++++ +...|+++
T Consensus 6 ~Ral~IL~~l~~~~~~lsl~eia~~lgl~--------------ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~ 65 (260)
T 3r4k_A 6 SKALTLLTYFNHGRLEIGLSDLTRLSGMN--------------KATVYRLMSELQEAGFVEQVEGARSYRLGPQ 65 (260)
T ss_dssp HHHHHHHTTCBTTBSEEEHHHHHHHHCSC--------------HHHHHHHHHHHHHTTSEEECSSSSEEEECTT
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEcCCCCcEEcCHH
Confidence 378889988875 5789999999987653 3688999999999999999875 55577665
No 150
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=87.97 E-value=0.35 Score=33.13 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCc
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR 108 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR 108 (129)
||+-|+-.+++.+..|....+.. .+ -+.+-+..+|+.||+.|||+..+. ||
T Consensus 40 VL~~L~~~~~~t~~eL~~~l~~~--~~--------~s~sTVt~~L~rLe~KGlV~R~~~-gR 90 (99)
T 2k4b_A 40 VMRVIWSLGEARVDEIYAQIPQE--LE--------WSLATVKTLLGRLVKKEMLSTEKE-GR 90 (99)
T ss_dssp HHHHHHHHSCEEHHHHHHTCCGG--GC--------CCHHHHHHHHHHHHHTTSCEEEEE-TT
T ss_pred HHHHHHhCCCCCHHHHHHHHhcc--cC--------CCHhhHHHHHHHHHHCCCEEEEeC-CC
Confidence 77778889999999999987642 12 234678899999999999998753 55
No 151
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=87.79 E-value=1.6 Score=29.91 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC------CCCceeCc------c
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP------KGGRRITS------S 113 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~------~~GR~lT~------~ 113 (129)
.|++.|.-++++....|...+|- |.+-++..|+.||+.|+|+... +-|..+|. .
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~ 73 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGI--------------SETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTK 73 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEEC
Confidence 47777777889999999998864 3468999999999999997431 13665654 4
Q ss_pred hHhhHHHHHHHhhh
Q 033029 114 GQRDLDQVAGRIVV 127 (129)
Q Consensus 114 G~~~lD~iA~~i~~ 127 (129)
+ ..++.++..+..
T Consensus 74 ~-~~~~~~~~~l~~ 86 (141)
T 1i1g_A 74 P-EKLFEVAEKLKE 86 (141)
T ss_dssp G-GGHHHHHHHHHH
T ss_pred c-hhHHHHHHHHhc
Confidence 4 467788777653
No 152
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=86.90 E-value=1.2 Score=29.40 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~ 103 (129)
.|+..|--+|.+.|..|...|+- |-.-||.-|..||+.|+|+..
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~V--------------S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNT--------------PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTC--------------CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEe
Confidence 46777778999999999998764 457999999999999999987
No 153
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=86.57 E-value=1.6 Score=32.76 Aligned_cols=65 Identities=12% Similarity=0.261 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec--CCCCc-------------ee
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE--PKGGR-------------RI 110 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~--~~~GR-------------~l 110 (129)
.|++.|. +|++.+..|....|- |.+-+++-|+.||+.|+|+.. ...|+ .|
T Consensus 24 ~IL~~L~-~~~~s~~eLA~~lgl--------------S~stv~~~l~~Le~~GlI~~~~~~~~~~~~~~~~g~~~~~~~v 88 (192)
T 1uly_A 24 KILKLLR-NKEMTISQLSEILGK--------------TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVFYI 88 (192)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSEEEE
T ss_pred HHHHHHH-cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEeccccccchhhhcCcceEEEEE
Confidence 4888888 899999999998764 345789999999999999876 22343 36
Q ss_pred CcchH-hhHHHHHHHh
Q 033029 111 TSSGQ-RDLDQVAGRI 125 (129)
Q Consensus 111 T~~G~-~~lD~iA~~i 125 (129)
|.+|. ..++.++..+
T Consensus 89 ~~~~~~~~~~~~~~~~ 104 (192)
T 1uly_A 89 NLYLGDEELRYIARSR 104 (192)
T ss_dssp CSCSSCHHHHHHHHHH
T ss_pred ecCCchhHHHHHHHHH
Confidence 77773 4566666554
No 154
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=86.49 E-value=0.61 Score=35.82 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=43.5
Q ss_pred HHHhHHHHHHHHHHhCC------C-chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCc
Q 033029 40 YYVRAASMARKIYLRQG------L-GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITS 112 (129)
Q Consensus 40 ~Y~R~ASilR~lYl~g~------v-GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~ 112 (129)
.|...+..++.--..|. + ....|+..||- |..-+|++|++|++.|+|+..+..|-.+++
T Consensus 11 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 76 (243)
T 2wv0_A 11 IYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGI--------------SRMTVRQALSNLVNEGLLYRLKGRGTFVSK 76 (243)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEeCCCeEEEeC
Confidence 35555655555444432 3 56788888875 346899999999999999998877887775
Q ss_pred c
Q 033029 113 S 113 (129)
Q Consensus 113 ~ 113 (129)
.
T Consensus 77 ~ 77 (243)
T 2wv0_A 77 P 77 (243)
T ss_dssp C
T ss_pred C
Confidence 4
No 155
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=86.28 E-value=0.69 Score=36.15 Aligned_cols=65 Identities=8% Similarity=0.072 Sum_probs=47.9
Q ss_pred HHHHHHHh--CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec--CCCCce----eCcchHhhH
Q 033029 47 MARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE--PKGGRR----ITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl~--g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~--~~~GR~----lT~~G~~~l 118 (129)
+|..||-+ +++.+..|....+-. ++.+. .+|+.||+.|||++. ++..|. ||++|+..+
T Consensus 39 vL~~L~~~~~~~~~~~el~~~l~~~-------------~~t~t-~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 39 LLTYLFHQQENTLPFKKIVSDLCYK-------------QSDLV-QHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHSCSCSEEEHHHHHHHSSSC-------------GGGTH-HHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCCC-------------HhhHH-HHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 78888875 478899999865432 33344 589999999999864 344443 899999988
Q ss_pred HHHHHHh
Q 033029 119 DQVAGRI 125 (129)
Q Consensus 119 D~iA~~i 125 (129)
+.+...+
T Consensus 105 ~~~~~~~ 111 (250)
T 1p4x_A 105 AERVTLF 111 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 156
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=86.25 E-value=0.69 Score=32.87 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=37.1
Q ss_pred HHHHHHHHhC-CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC-CCCceeCcch
Q 033029 46 SMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP-KGGRRITSSG 114 (129)
Q Consensus 46 SilR~lYl~g-~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~-~~GR~lT~~G 114 (129)
.+|..|..++ + .+..++..++- |-..++++|++|.++|||+... .||-.|+..-
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i--------------~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p 68 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNT--------------NPVVVRRMISLLKKADILTSRAGVPGASLKKDP 68 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEECCSSSSSCEESSCG
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCceEeecCCCCceecCCH
Confidence 3444444432 3 56666666554 4469999999999999998654 5788887654
No 157
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=86.14 E-value=0.25 Score=37.48 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=26.4
Q ss_pred HHHHHHhCCceeecC-CCCc------eeCcchHhhHHHHHHHh
Q 033029 90 ILQQLQNMNIIDIEP-KGGR------RITSSGQRDLDQVAGRI 125 (129)
Q Consensus 90 ~lqqLE~~g~vek~~-~~GR------~lT~~G~~~lD~iA~~i 125 (129)
+|.+||+.|+|+... .+|| .||++|+..+.+.-.+.
T Consensus 54 ~l~~Le~~GlI~~~~~~~~rpektvY~ITe~Gr~~l~~~l~~~ 96 (180)
T 2rkh_A 54 SIELLRYEGLVEAVDDGQGMEDDAMLAISAAGRRELHSLLTAR 96 (180)
T ss_dssp CTHHHHHTTSEECCC--------CEEEECHHHHHHHHHHHSCC
T ss_pred HHHHHHHCCCeeeeecCCCCCccceeeeCHHHHHHHHHHHHHH
Confidence 789999999997655 3443 69999999998765543
No 158
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=86.07 E-value=0.88 Score=35.01 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHH-hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcch
Q 033029 42 VRAASMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSG 114 (129)
Q Consensus 42 ~R~ASilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G 114 (129)
-|+..||+.|.- .+++++..|.+..|-. .+-+.++|+.|++.|||+++. +.-.|+++.
T Consensus 14 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~--------------~stv~r~l~~L~~~G~v~~~~-~~Y~Lg~~~ 72 (257)
T 2g7u_A 14 ERGFAVLLAFDAQRPNPTLAELATEAGLS--------------RPAVRRILLTLQKLGYVAGSG-GRWSLTPRV 72 (257)
T ss_dssp HHHHHHHHTCSSSCSSCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEET-TEEEECGGG
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEeCC-CEEEEcHHH
Confidence 367778877764 3689999999987652 357889999999999999874 567888875
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=85.84 E-value=1 Score=35.60 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=40.9
Q ss_pred HHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHH-HHHhCCceeecCCCCceeCcchHhhH
Q 033029 51 IYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQ-QLQNMNIIDIEPKGGRRITSSGQRDL 118 (129)
Q Consensus 51 lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lq-qLE~~g~vek~~~~GR~lT~~G~~~l 118 (129)
.|-.+|+|+..++...|-.. .-++.+.. .|..+|+|+..+ .||++|++|-+.|
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~--------------~t~~~~~~~~l~~~g~i~~~~-~gr~~~~~~~~~~ 324 (334)
T 1in4_A 271 IYRGGPVGLNALAASLGVEA--------------DTLSEVYEPYLLQAGFLARTP-RGRIVTEKAYKHL 324 (334)
T ss_dssp HSTTCCBCHHHHHHHHTSCH--------------HHHHHHTHHHHHHTTSEEEET-TEEEECHHHHHHT
T ss_pred HhCCCcchHHHHHHHhCCCc--------------chHHHHHHHHHHHcCCeeccc-ccHHhhHHHHHHh
Confidence 34457899999999877531 13555555 899999999998 4999999998776
No 160
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=85.45 E-value=2 Score=29.81 Aligned_cols=68 Identities=7% Similarity=0.051 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec-----C-CCCce------eCcc
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-----P-KGGRR------ITSS 113 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~-----~-~~GR~------lT~~ 113 (129)
.|++.|--++++.+..|....|- |.+-++..|+.||+.|+|+.. + +-|+. ++..
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~ 72 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRI--------------PKATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAK 72 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCceEEEEEEEec
Confidence 47777777889999999998764 346889999999999999862 1 22544 3544
Q ss_pred h-HhhHHHHHHHhhh
Q 033029 114 G-QRDLDQVAGRIVV 127 (129)
Q Consensus 114 G-~~~lD~iA~~i~~ 127 (129)
+ ...++.++..+..
T Consensus 73 ~~~~~~~~~~~~l~~ 87 (150)
T 2pn6_A 73 YGKNYHVELGNKLAQ 87 (150)
T ss_dssp CCTTHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHhc
Confidence 4 5678888877754
No 161
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=85.23 E-value=2 Score=26.91 Aligned_cols=46 Identities=4% Similarity=0.018 Sum_probs=36.8
Q ss_pred HHHHHHHHh-CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC
Q 033029 46 SMARKIYLR-QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 105 (129)
Q Consensus 46 SilR~lYl~-g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~ 105 (129)
.||..|--+ +|+.+..|+...|-. .+.+.++|+.||+.|+|+..+.
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lgls--------------r~tv~~~l~~L~~~G~I~~~~~ 60 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVP--------------KKTLNQVLYRLKKEDRVSSPSP 60 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSC--------------HHHHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCcEecCCC
Confidence 366666555 589999999998763 4689999999999999987543
No 162
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=85.21 E-value=2.8 Score=28.85 Aligned_cols=45 Identities=4% Similarity=0.135 Sum_probs=37.0
Q ss_pred HHHHHHHHhCC--CchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC
Q 033029 46 SMARKIYLRQG--LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 46 SilR~lYl~g~--vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~ 104 (129)
.|+..|.-.++ +.+..|....|- |.+-+.+.|+.||+.|+|++..
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~--------------s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKL--------------DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEeeC
Confidence 47777777665 899999998762 5678999999999999998743
No 163
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=84.99 E-value=1.2 Score=30.34 Aligned_cols=44 Identities=7% Similarity=0.106 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~ 103 (129)
.|+..|--+|.+.|..|...||- |-.-||.-|..||+.|+|...
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~V--------------S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQT--------------PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTC--------------CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEE
Confidence 36777778899999999998864 457999999999999999876
No 164
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=84.94 E-value=1.4 Score=29.77 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=36.0
Q ss_pred CCCCCcccccChhHHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCccc
Q 033029 1 MATARTVKDVSPHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFC 80 (129)
Q Consensus 1 m~~~~tv~DV~~~~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~ 80 (129)
|..++++.|+........+-++|+++ | +.+..|.+..|=
T Consensus 4 ~~~~~~~~d~~~~~~~~~IL~lL~~~----------------------------g-~sa~eLAk~Lgi------------ 42 (82)
T 1oyi_A 4 MASKIYIDERSNAEIVCEAIKTIGIE----------------------------G-ATAAQLTRQLNM------------ 42 (82)
T ss_dssp ---------CCSHHHHHHHHHHHSSS----------------------------T-EEHHHHHHHSSS------------
T ss_pred cccccCccccchHHHHHHHHHHHHHc----------------------------C-CCHHHHHHHHCc------------
Confidence 34445666776666666666666643 1 445555555442
Q ss_pred CCchhHHHHHHHHHHhCCceeecC
Q 033029 81 KSSGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 81 ~asg~iiR~~lqqLE~~g~vek~~ 104 (129)
|.+-+|+.|+.||+.|+|.+..
T Consensus 43 --Sk~aVr~~L~~Le~eG~I~~~~ 64 (82)
T 1oyi_A 43 --EKREVNKALYDLQRSAMVYSSD 64 (82)
T ss_dssp --CHHHHHHHHHHHHHHTSSEECS
T ss_pred --CHHHHHHHHHHHHHCCCEEeCC
Confidence 3468999999999999998863
No 165
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=84.87 E-value=0.68 Score=35.41 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=33.8
Q ss_pred chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcc
Q 033029 58 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 113 (129)
Q Consensus 58 GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~ 113 (129)
....|+..||- |..-+|.+|+.|++.|+|+..+..|-.+++.
T Consensus 31 se~~La~~~~v--------------Sr~tvr~Al~~L~~~g~i~~~~g~G~~V~~~ 72 (239)
T 3bwg_A 31 VLETLMAQFEV--------------SKSTITKSLELLEQKGAIFQVRGSGIFVRKH 72 (239)
T ss_dssp CHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEeCCceEEEecC
Confidence 56778888775 4568999999999999999888777766543
No 166
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=84.59 E-value=0.62 Score=35.98 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=33.5
Q ss_pred chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcc
Q 033029 58 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 113 (129)
Q Consensus 58 GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~ 113 (129)
....|+..||- |..-+|++|+.|++.|+|+. +..|-.+++.
T Consensus 38 se~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~-~g~Gt~V~~~ 78 (248)
T 3f8m_A 38 AEREIAEQFEV--------------ARETVRQALRELLIDGRVER-RGRTTVVARP 78 (248)
T ss_dssp CHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEE-ETTEEEECCC
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEe-CCCEEEEccC
Confidence 56778887764 45799999999999999999 8778777654
No 167
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=83.43 E-value=2.3 Score=33.60 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=42.8
Q ss_pred HHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCcee-ecC
Q 033029 41 YVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIID-IEP 104 (129)
Q Consensus 41 Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~ve-k~~ 104 (129)
-.|-+..+-.+|-.+++++..|++.+|- |..-||+-|+.||+.|+|+ +..
T Consensus 6 ~~~~~~~ia~l~~~~~~~~~ela~~l~v--------------S~~tIrRdL~~l~~~G~v~iri~ 56 (315)
T 2w48_A 6 DIRLIVKIAQLYYEQDMTQAQIARELGI--------------YRTTISRLLKRGREQGIVTIAIN 56 (315)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEEec
Confidence 4566777788899999999999999875 5679999999999999998 553
No 168
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=83.34 E-value=8.4 Score=27.90 Aligned_cols=68 Identities=9% Similarity=0.140 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec-----C-CCCc-------eeCc
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-----P-KGGR-------RITS 112 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~-----~-~~GR-------~lT~ 112 (129)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|+.. + +-|+ .+++
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lgl--------------S~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~ 86 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKK--------------PESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGK 86 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECC
Confidence 47888888899999999998874 346889999999999999742 2 2254 3455
Q ss_pred c-----hHhhHHHHHHHhhh
Q 033029 113 S-----GQRDLDQVAGRIVV 127 (129)
Q Consensus 113 ~-----G~~~lD~iA~~i~~ 127 (129)
. ....+|.++..+..
T Consensus 87 ~~~~~f~~~~~~~~~~~l~~ 106 (171)
T 2ia0_A 87 PVIEDFLERYISYISSTLSA 106 (171)
T ss_dssp C--CHHHHHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHHHHHC
Confidence 5 55578888888754
No 169
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=83.22 E-value=5.2 Score=27.86 Aligned_cols=68 Identities=12% Similarity=0.183 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceee-----cC-CCCce------eCcc
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI-----EP-KGGRR------ITSS 113 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek-----~~-~~GR~------lT~~ 113 (129)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|.. ++ +-|+. ++-.
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~ 77 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGV--------------SPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILK 77 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEES
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEEC
Confidence 57888878899999999998764 34689999999999999985 22 23654 3444
Q ss_pred hHhhHHHHHHHhhh
Q 033029 114 GQRDLDQVAGRIVV 127 (129)
Q Consensus 114 G~~~lD~iA~~i~~ 127 (129)
....++.++..+..
T Consensus 78 ~~~~~~~~~~~l~~ 91 (152)
T 2cg4_A 78 SAKDYPSALAKLES 91 (152)
T ss_dssp SGGGHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 44568888887754
No 170
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=82.12 E-value=1.8 Score=34.78 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHH
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQ 120 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~ 120 (129)
.++|.| ++|..+..|...+|-. -..++..|++|.++|+++... |-.+|+.+...|.+
T Consensus 47 ~ll~~L--~~~~t~~eLa~~~g~~--------------~~~v~~~L~~l~~~gll~~~~--~~~lt~~~~~~l~~ 103 (373)
T 2qm3_A 47 NVLSAV--LASDDIWRIVDLSEEP--------------LPLVVAILESLNELGYVTFED--GVKLTEKGEELVAE 103 (373)
T ss_dssp HHHHHH--HHCSCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEECSS--SSEECHHHHHHHHH
T ss_pred HHHHHh--cCCCCHHHHHHHhCCC--------------hHHHHHHHHHHhhCCcEEECC--CEEECHHHHHHHHh
Confidence 367877 7899999999987652 348999999999999998754 59999998877765
No 171
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=81.94 E-value=1.7 Score=34.36 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=53.4
Q ss_pred hHHHHHHHHHH---hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHH
Q 033029 43 RAASMARKIYL---RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLD 119 (129)
Q Consensus 43 R~ASilR~lYl---~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD 119 (129)
++=|++=.|++ -+.+-++.|-...+. -|+. ...+|.+|--|-+.|+++... .|..||+.|++.++
T Consensus 4 ~arSlIlsll~g~~g~~i~~~~Li~l~~~---~Gi~--------e~avRtAlsRL~~~G~L~~~~-~GY~LT~~~~~~~~ 71 (247)
T 3kfw_X 4 TARSVVLSVLLGAHPAWATASELIQLTAD---FGIK--------ETTLRVALTRMVGAGDLVRSA-DGYRLSDRLLARQR 71 (247)
T ss_dssp CHHHHHHHHHTTTTTSCBCHHHHHHHHTT---TTCC--------HHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHH
T ss_pred CCceeeEeeecCCCCCcccHHHHHHHHHH---cCCC--------hHHHHHHHHHHHHcCCeeccC-CceeeCHHHHHHHH
Confidence 44566666554 246777887777653 2443 368999999999999999865 58999999999888
Q ss_pred HHHHHhh
Q 033029 120 QVAGRIV 126 (129)
Q Consensus 120 ~iA~~i~ 126 (129)
+....|.
T Consensus 72 ~~~~rI~ 78 (247)
T 3kfw_X 72 RQDEAMR 78 (247)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 7766653
No 172
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=80.54 E-value=1.1 Score=34.74 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHH-hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcc
Q 033029 42 VRAASMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 113 (129)
Q Consensus 42 ~R~ASilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~ 113 (129)
-|+..||..|.- .+++++..|....|-. .+-+.++|+.|++.|||+++. +...|+++
T Consensus 21 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~--------------~stv~r~l~tL~~~G~v~~~~-~~Y~Lg~~ 78 (265)
T 2ia2_A 21 ARGLAVIRCFDHRNQRRTLSDVARATDLT--------------RATARRFLLTLVELGYVATDG-SAFWLTPR 78 (265)
T ss_dssp HHHHHHHHTCCSSCSSEEHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEESS-SEEEECGG
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEecC-CEEEEcHH
Confidence 467778877654 4689999999987652 367889999999999999873 55677765
No 173
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=80.12 E-value=0.8 Score=32.78 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHhCCceeecCC
Q 033029 83 SGAIARHILQQLQNMNIIDIEPK 105 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~~~ 105 (129)
.||+.|.+|+.||+-|+|.....
T Consensus 72 ~gSLAR~aLreL~~kGlIk~V~k 94 (108)
T 3u5c_Z 72 GGSLARIALRHLEKEGIIKPISK 94 (108)
T ss_dssp CTTHHHHHHHHHSSSSSCEEEEC
T ss_pred hHHHHHHHHHHHHHCCCEEEEec
Confidence 57899999999999999986543
No 174
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=79.23 E-value=9.6 Score=26.81 Aligned_cols=67 Identities=12% Similarity=0.027 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC------CCCce--------eC
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP------KGGRR--------IT 111 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~------~~GR~--------lT 111 (129)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|+... +-|.. ++
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~ 79 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVAL--------------SPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIR 79 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEc
Confidence 58888888899999999998864 3467899999999999998521 12443 24
Q ss_pred cchHhhHHHHHHHhhh
Q 033029 112 SSGQRDLDQVAGRIVV 127 (129)
Q Consensus 112 ~~G~~~lD~iA~~i~~ 127 (129)
+.. ..++.++..+..
T Consensus 80 ~~~-~~~~~~~~~l~~ 94 (162)
T 2p5v_A 80 KAK-DAREDFAASVRK 94 (162)
T ss_dssp SST-THHHHHHHHHTT
T ss_pred CCc-hHHHHHHHHHhc
Confidence 544 668888887754
No 175
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=78.83 E-value=2.9 Score=31.64 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~ 104 (129)
.||..| .++|..+..|....| -|.+-+-..|+.||+.|||+...
T Consensus 19 ~IL~~L-~~~~~s~~eLa~~l~--------------is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 19 RILFLL-TKRPYFVSELSRELG--------------VGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHH-HHSCEEHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-HhCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCceEEEe
Confidence 477777 479999999999885 45578899999999999998644
No 176
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=78.53 E-value=0.78 Score=32.84 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHhCCceeecCC
Q 033029 83 SGAIARHILQQLQNMNIIDIEPK 105 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~~~ 105 (129)
.||+.|.+|+.||+-|+|.....
T Consensus 73 ~gSLAR~aLreL~~kGlIk~V~k 95 (108)
T 3iz6_V 73 NGSLARQAIKDLESRGAIRVVSV 95 (108)
T ss_dssp CCHHHHHHHHHHHHHHTSCEECC
T ss_pred cHHHHHHHHHHHHHCCCEEEEec
Confidence 47899999999999999986643
No 177
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=78.30 E-value=1.5 Score=36.50 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=30.0
Q ss_pred HHHHHHhCCceeecCCCCceeCcchHhhHHHHHHHh
Q 033029 90 ILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRI 125 (129)
Q Consensus 90 ~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~~i 125 (129)
.|++|++.|||+.+. +.=+||++|+-.+|.|+...
T Consensus 406 ~l~~~~~~gll~~~~-~~~~lT~~G~~~~~~i~~~f 440 (457)
T 1olt_A 406 LLAPLAKDGLVDVDE-KGIQVTAKGRLLIRNICMCF 440 (457)
T ss_dssp HHHHHHHTTSEEECS-SEEEECTTTGGGHHHHHHTT
T ss_pred HHHHHHHCCCEEEEC-CEEEECHhhHHHHHHHHHHH
Confidence 478899999998764 46689999999999999875
No 178
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=77.31 E-value=3.5 Score=25.87 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=39.9
Q ss_pred HHHHHHHHHh--CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC
Q 033029 45 ASMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 105 (129)
Q Consensus 45 ASilR~lYl~--g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~ 105 (129)
..|+.-|.-. +++.+..|....... + | .-|-+-+++.|+.||+.|+|.+...
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~---~--~----~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDM---G--E----EIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHT---T--C----CCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHh---C--C----CCCHhhHHHHHHHHHHCCCeEEEee
Confidence 4588877655 689999999987542 1 1 3356789999999999999998654
No 179
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=77.22 E-value=2 Score=33.46 Aligned_cols=42 Identities=5% Similarity=0.020 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceee
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI 102 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek 102 (129)
.|++.|. +||..+..|....| -|.+-+.+.|+.||++|+|+.
T Consensus 16 ~IL~~L~-~g~~s~~ELa~~lg--------------lS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLT-CMECYFSLLSSKVS--------------VSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHT-TTTTCSSSSCTTCC--------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCEEE
Confidence 4777776 68888888887654 345689999999999999987
No 180
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=76.99 E-value=0.63 Score=35.84 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=6.5
Q ss_pred chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcch
Q 033029 58 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSG 114 (129)
Q Consensus 58 GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G 114 (129)
....|+..||- |..-+|.+|+.|++.|+|+..+..|-.+++..
T Consensus 42 se~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~ 84 (247)
T 2ra5_A 42 NEIELAARLGL--------------SRPTVRQAIQSLVDKGLLVRRRGVGTQVVHSK 84 (247)
T ss_dssp ----------------------------------------CEEEEEC----------
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEcCceeEEeccc
Confidence 45666776664 34579999999999999998887777776543
No 181
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=76.37 E-value=6.2 Score=26.46 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=33.2
Q ss_pred HHHHHHHhC--CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCcee
Q 033029 47 MARKIYLRQ--GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIID 101 (129)
Q Consensus 47 ilR~lYl~g--~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~ve 101 (129)
|++.|+-.| ++-...|++.-+= +-..+-+||+.||+.|||.
T Consensus 25 Vl~~I~~~g~~gi~qkeLa~~~~l--------------~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 25 VYQIIEDAGNKGIWSRDVRYKSNL--------------PLTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEE
Confidence 888888855 7777899987543 3357999999999999998
No 182
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=73.73 E-value=1.7 Score=32.57 Aligned_cols=23 Identities=13% Similarity=0.502 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHHhCCceeecC
Q 033029 82 SSGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 82 asg~iiR~~lqqLE~~g~vek~~ 104 (129)
=.||+.|.+|+.||+-|+|....
T Consensus 75 I~gSLARkaLreL~~kGlIk~V~ 97 (143)
T 2xzm_8 75 VNGSLARQLMRTMADRKLVEKVA 97 (143)
T ss_dssp BCHHHHHHHHHHHHHTTSEEEEE
T ss_pred chHHHHHHHHHHHHHCCCEEEEe
Confidence 35899999999999999997543
No 183
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=73.12 E-value=3.1 Score=30.05 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCceeecCC---CC-------ceeCcchHh
Q 033029 86 IARHILQQLQNMNIIDIEPK---GG-------RRITSSGQR 116 (129)
Q Consensus 86 iiR~~lqqLE~~g~vek~~~---~G-------R~lT~~G~~ 116 (129)
-+=-+|..||+.|+|+.... +. -.||++|+.
T Consensus 56 tlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~ 96 (122)
T 1bm9_A 56 EVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAA 96 (122)
T ss_dssp HHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHH
T ss_pred cHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhh
Confidence 56678999999999975432 22 269999999
No 184
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=71.70 E-value=7.7 Score=25.39 Aligned_cols=78 Identities=14% Similarity=0.230 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHH
Q 033029 14 EFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQ 93 (129)
Q Consensus 14 ~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqq 93 (129)
...+.++..+|--+ || +|. .|++.+.-+|+..+..|....|- |.+-+.+-|+.
T Consensus 12 ~~~~~~~~~~~aL~--------~~----~Rl-~IL~~l~~~~~~~~~ela~~l~i--------------s~stvs~hL~~ 64 (99)
T 2zkz_A 12 MSLEDDAELLKTMA--------HP----MRL-KIVNELYKHKALNVTQIIQILKL--------------PQSTVSQHLCK 64 (99)
T ss_dssp CCHHHHHHHHHHHC--------SH----HHH-HHHHHHHHHSCEEHHHHHHHHTC--------------CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhC--------CH----HHH-HHHHHHHHCCCcCHHHHHHHHCc--------------CHHHHHHHHHH
Confidence 44555666666532 44 332 47777777899999999998765 23578889999
Q ss_pred HHhCCceeecCCCCc----eeCcchHhhHHH
Q 033029 94 LQNMNIIDIEPKGGR----RITSSGQRDLDQ 120 (129)
Q Consensus 94 LE~~g~vek~~~~GR----~lT~~G~~~lD~ 120 (129)
||++ +|+...+ || .||+.+...+-+
T Consensus 65 L~~~-lv~~~~~-gr~~~y~l~~~~~~~~~~ 93 (99)
T 2zkz_A 65 MRGK-VLKRNRQ-GLEIYYSINNPKVEGIIK 93 (99)
T ss_dssp HBTT-TBEEEEE-TTEEEEECCCHHHHHHHH
T ss_pred HHHH-hhhheEe-CcEEEEEEChHHHHHHHH
Confidence 9999 9986654 44 468777655543
No 185
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=69.34 E-value=9.6 Score=27.85 Aligned_cols=40 Identities=18% Similarity=0.048 Sum_probs=29.0
Q ss_pred CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCce
Q 033029 56 GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRR 109 (129)
Q Consensus 56 ~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~ 109 (129)
|..+..|+..+|-. +. -++..|++||+.|+|+.++.+.|.
T Consensus 24 ~~s~~eia~~lgl~-------------~~-tv~~~l~~Le~~G~i~~~~~~~r~ 63 (196)
T 3k2z_A 24 PPSVREIARRFRIT-------------PR-GALLHLIALEKKGYIERKNGKPRA 63 (196)
T ss_dssp CCCHHHHHHHHTSC-------------HH-HHHHHHHHHHHTTSEECC---TTC
T ss_pred CCCHHHHHHHcCCC-------------cH-HHHHHHHHHHHCCCEEecCCCcce
Confidence 67889999988764 11 378889999999999987644343
No 186
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=69.23 E-value=5 Score=28.83 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhC---CceeecCC----CCceeCcchHhhHHHHH
Q 033029 85 AIARHILQQLQNM---NIIDIEPK----GGRRITSSGQRDLDQVA 122 (129)
Q Consensus 85 ~iiR~~lqqLE~~---g~vek~~~----~GR~lT~~G~~~lD~iA 122 (129)
+-+=..+++||+. .|++.... +|=.||+.|+.+++..-
T Consensus 53 savS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~a~ 97 (135)
T 2ijl_A 53 RRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERYR 97 (135)
T ss_dssp HHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHHHH
Confidence 4566778999987 78888752 47789999999987653
No 187
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=67.66 E-value=3.2 Score=31.94 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.2
Q ss_pred HHHHHHH-HHHhCCceeecCCCCceeCcchHhhHH
Q 033029 86 IARHILQ-QLQNMNIIDIEPKGGRRITSSGQRDLD 119 (129)
Q Consensus 86 iiR~~lq-qLE~~g~vek~~~~GR~lT~~G~~~lD 119 (129)
-+...++ -|.+.|+|...+ .||++|++|...|.
T Consensus 295 tl~~~l~~~l~~~gli~~~~-~g~~~t~~~~~~~~ 328 (338)
T 3pfi_A 295 TIEDVIEPYLLANGYIERTA-KGRIASAKSYSALK 328 (338)
T ss_dssp HHHHTTHHHHHHTTSEEEET-TEEEECHHHHHHHH
T ss_pred HHHHHHhHHHHHcCceecCC-CcccccHHHHHHhc
Confidence 3444444 788999999876 69999999999885
No 188
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=66.44 E-value=13 Score=25.76 Aligned_cols=43 Identities=9% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceee
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI 102 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek 102 (129)
.||+.|.-++++.+..|....|- |.+-++..|+.||+.|+|+.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGL--------------SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEE
Confidence 47777777899999999998764 34578999999999999974
No 189
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=64.93 E-value=10 Score=24.91 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=33.4
Q ss_pred HHHHHHHhC---CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec
Q 033029 47 MARKIYLRQ---GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 47 ilR~lYl~g---~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~ 103 (129)
|+.-|--++ ++-+..|++..|- |.+-|++.|..||+.|+|+..
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgv--------------sr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGT--------------PKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEec
Confidence 555555566 6888888888873 235799999999999999875
No 190
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=63.90 E-value=2.9 Score=30.67 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=43.4
Q ss_pred CCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC
Q 033029 36 DPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 105 (129)
Q Consensus 36 d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~ 105 (129)
+.||-++|- |||||+|--+..-.|=.. .-+..-.+...++.|..+..||++..-.+..+
T Consensus 46 ~~~W~~~Rn-------~IhGPlg~lr~~m~~l~~----~Llp~dqk~A~~lak~l~~~L~~LD~AA~~~n 104 (130)
T 3zsu_A 46 KGDWQEARN-------IMRGPLGEMLMDMRALNR----NLLAKDQPTPTALTRALTDDFLKIDQGADLDS 104 (130)
T ss_dssp TTCHHHHHH-------HHHTHHHHHHHHHHHHHH----TSCGGGSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcchHHHHH-------HHhchHHHHHHHHHHHHH----hcCHhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 569999998 999998765555444221 12445567778999999999999988776554
No 191
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=62.37 E-value=17 Score=25.02 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceee
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI 102 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek 102 (129)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKL--------------SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEE
Confidence 47787877899999999998764 34678999999999999985
No 192
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=59.78 E-value=17 Score=28.86 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCcee-ecCCCCceeCcc
Q 033029 43 RAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIID-IEPKGGRRITSS 113 (129)
Q Consensus 43 R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~ve-k~~~~GR~lT~~ 113 (129)
|-..|++.|--++.+.+..|...+|- |..-||+-|+.||+.|++. ..+..|..|.+.
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~v--------------S~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~~ 63 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGM--------------SRAAINKHIQTLRDWGVDVFTVPGKGYSLPEP 63 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTCCCEEETTTEEECSSC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHhCCCcEEEecCCCcEEeec
Confidence 55668887765678999999999863 4468999999999999985 444457777654
No 193
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=59.16 E-value=6.7 Score=28.46 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHHH
Q 033029 85 AIARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 85 ~iiR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~iA 122 (129)
+-+=+.+++||+. .|++.+. +|=.||+.|+.+++.+-
T Consensus 30 ~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~ 69 (294)
T 1ixc_A 30 PPITRQMQALEADLGVVLLERSH-RGIELTAAGHAFLEDAR 69 (294)
T ss_dssp HHHHHHHHHHHHHHTSCCBC------CCBCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCEEEEeCC-CCeeECHhHHHHHHHHH
Confidence 3456678899986 7777764 58899999999887643
No 194
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=58.50 E-value=28 Score=27.06 Aligned_cols=49 Identities=12% Similarity=0.090 Sum_probs=38.3
Q ss_pred HhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCC--CceeCcchH
Q 033029 53 LRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG--GRRITSSGQ 115 (129)
Q Consensus 53 l~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~--GR~lT~~G~ 115 (129)
-.||+.+..|....|-. -..++..|..|..+|+++...++ .-.+|+.+.
T Consensus 46 ~~~~~t~~eLA~~~g~~--------------~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~ 96 (374)
T 1qzz_A 46 LAGADTLAGLADRTDTH--------------PQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGM 96 (374)
T ss_dssp HTTCCSHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGG
T ss_pred hCCCCCHHHHHHHhCcC--------------HHHHHHHHHHHhhCCCEEEeCCCCeEEEEChHHH
Confidence 35899999999987652 25799999999999999885555 567777654
No 195
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=57.95 E-value=22 Score=30.67 Aligned_cols=76 Identities=8% Similarity=-0.023 Sum_probs=53.8
Q ss_pred HHHHHHHHH----HhCCCchhhhHHHhcccCCCCCCCCc--ccCCchhHHHHHHHHHHhCCceeecCC---CC----cee
Q 033029 44 AASMARKIY----LRQGLGVGSFRRIYGGSKRNGSRPPH--FCKSSGAIARHILQQLQNMNIIDIEPK---GG----RRI 110 (129)
Q Consensus 44 ~ASilR~lY----l~g~vGV~~lr~~YGg~k~rG~~P~h--~~~asg~iiR~~lqqLE~~g~vek~~~---~G----R~l 110 (129)
|-.++.-|| .....|+..+..++-|+++.-++-.. ...-+..-++.++.||-..|+++.+.. -| =.|
T Consensus 446 ~~~~l~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 525 (591)
T 2v1x_A 446 CRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKI 525 (591)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHTTCSCGGGCCTTCCCCSCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHhCCCchHHHhcCCCcCcCCHHHHHHHHHHHHHcCCcEEecccCCCceeEEeeE
Confidence 444556665 56789999999998887654333222 345577789999999999999987532 12 258
Q ss_pred CcchHhhHH
Q 033029 111 TSSGQRDLD 119 (129)
Q Consensus 111 T~~G~~~lD 119 (129)
|++|+..|.
T Consensus 526 ~~~~~~~~~ 534 (591)
T 2v1x_A 526 GPKANLLNN 534 (591)
T ss_dssp CGGGGGGGS
T ss_pred CHHHHHHhc
Confidence 999987764
No 196
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=57.87 E-value=10 Score=27.64 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHHH
Q 033029 85 AIARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 85 ~iiR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~iA 122 (129)
+-+=+.+++||+. .|++.+. +|=.||+.|+.+++.+-
T Consensus 32 ~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~ 71 (306)
T 3hhg_A 32 SAVSRIVKRLEEKLGVNLLNRTT-RQLSLTEEGAQYFRRAQ 71 (306)
T ss_dssp HHHHHHHHHHHHHHTSCCEETTS-SSCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEeecC-CCeeECHhHHHHHHHHH
Confidence 3556678888874 6777764 68899999998887654
No 197
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=56.33 E-value=18 Score=24.89 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceee
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI 102 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek 102 (129)
.|++.|.-++++.+..|....|- |.+-++..++.||+.|+|..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNT--------------TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTS--------------CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEE
Confidence 47888888899999999998764 34578999999999999984
No 198
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=56.02 E-value=16 Score=25.33 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=47.8
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC------CCCcee------Ccc
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP------KGGRRI------TSS 113 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~------~~GR~l------T~~ 113 (129)
.|++.|.-++++.+..|....|- |.+-++..|+.||+.|+|.... +-|..+ +-.
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~ 76 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGL--------------AESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVK 76 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCS--------------CHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEEC
Confidence 47888888899999999998864 3467899999999999997521 225432 211
Q ss_pred hHhhHHHHHHHhhh
Q 033029 114 GQRDLDQVAGRIVV 127 (129)
Q Consensus 114 G~~~lD~iA~~i~~ 127 (129)
...++.++..+..
T Consensus 77 -~~~~~~~~~~l~~ 89 (151)
T 2cyy_A 77 -AGKYSEVASNLAK 89 (151)
T ss_dssp -TTCHHHHHHHHHT
T ss_pred -cccHHHHHHHHhc
Confidence 3456777777654
No 199
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=55.57 E-value=25 Score=27.18 Aligned_cols=49 Identities=10% Similarity=0.113 Sum_probs=39.2
Q ss_pred hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHh
Q 033029 54 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQR 116 (129)
Q Consensus 54 ~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~ 116 (129)
.||..+..|....|- +-..++..|..|..+|+|+...++.-.+|+.+..
T Consensus 50 ~~~~t~~ela~~~~~--------------~~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~~ 98 (360)
T 1tw3_A 50 AGARTVKALAARTDT--------------RPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGEL 98 (360)
T ss_dssp TTCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGG
T ss_pred CCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHHCCCEEecCCCeEEeCHHHHH
Confidence 689999999998765 2368999999999999998755555778876543
No 200
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=55.33 E-value=23 Score=25.68 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=44.2
Q ss_pred HhHHHHHHHHHHh-CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCc-eeecCCCCceeCcch
Q 033029 42 VRAASMARKIYLR-QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNI-IDIEPKGGRRITSSG 114 (129)
Q Consensus 42 ~R~ASilR~lYl~-g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~-vek~~~~GR~lT~~G 114 (129)
-|.-.|+..|--+ +++.+..|...+| -|..-||+=|+.||+.|+ |.... +|..|++..
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~--------------vS~~Ti~rdi~~L~~~G~~I~~~~-~Gy~l~~~~ 80 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELS--------------VSRQVIVQDIAYLRSLGYNIVATP-RGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHT--------------SCHHHHHHHHHHHHHHTCCCEEET-TEEECCTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCCeEEEEC-CEEEECCcc
Confidence 3566778777654 5699999999985 345688999999999999 87653 677777643
No 201
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=54.87 E-value=11 Score=27.75 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHHH
Q 033029 86 IARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 86 iiR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~iA 122 (129)
-+=+.+++||+. .|++.+. +|=.||+.|+.+++.+.
T Consensus 40 avS~~I~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~ 78 (310)
T 2esn_A 40 AFSHALGRLRQGLDDELFLRQG-NRMQPTQRAEHLAAAVA 78 (310)
T ss_dssp HHHHHHHHHHHHHTSCCEEEET-TEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCcceeecC-CCccccHHHHHHHHHHH
Confidence 455677888875 7777764 58889999999887653
No 202
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=54.74 E-value=24 Score=26.81 Aligned_cols=55 Identities=11% Similarity=0.006 Sum_probs=46.0
Q ss_pred CCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCC
Q 033029 36 DPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 105 (129)
Q Consensus 36 d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~ 105 (129)
..|=...|-..|++-|- +|++.+..+.+.-|- |=+-++++|-+||+.|+|+..+.
T Consensus 5 ~Td~v~erk~~ILE~Lk-~G~~~t~~Iak~LGl--------------Shg~aq~~Ly~LeREG~V~~Vk~ 59 (165)
T 2vxz_A 5 HSREVLVRLRDILALLA-DGCKTTSLIQQRLGL--------------SHGRAKALIYVLEKEGRVTRVAF 59 (165)
T ss_dssp CCHHHHHHHHHHHHHHT-TCCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSCEEEEE
T ss_pred hhHHHHHHHHHHHHHHH-hCCccHHHHHHHhCC--------------cHHHHHHHHHHHHhcCceEEEEE
Confidence 34556678888999888 999999999998775 33689999999999999998864
No 203
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=53.57 E-value=12 Score=26.78 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHHH
Q 033029 86 IARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 86 iiR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~iA 122 (129)
-+=+.+++||+. .|++.+. +|=.||+.|+.+++.+-
T Consensus 31 avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~ 69 (291)
T 3szp_A 31 TITRRIQALEDSLNLRLLNRHA-RKLTLTEAGERFYKDCS 69 (291)
T ss_dssp HHHHHHHHHHHHHTCCCEEEET-TEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCceEeecC-CCcccCHhHHHHHHHHH
Confidence 455667888874 6788774 68899999999887643
No 204
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=53.41 E-value=19 Score=26.40 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHHHH
Q 033029 85 AIARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVAG 123 (129)
Q Consensus 85 ~iiR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~iA~ 123 (129)
+-+=+.+++||+. .|++.+ + |-.||+.|+.+++....
T Consensus 35 ~avS~~i~~LE~~lg~~Lf~R~-~-~~~lT~~G~~l~~~a~~ 74 (303)
T 3isp_A 35 SAVSQRIKSLEQQVGQVLVVRE-K-PCRATTAGIPLLRLAAQ 74 (303)
T ss_dssp HHHHHHHHHHHHHHTSCCEECS-S-SCEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEEcC-C-CCeeCchHHHHHHHHHH
Confidence 3455678888875 677776 4 89999999999887543
No 205
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=52.10 E-value=6.9 Score=28.56 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHHH
Q 033029 86 IARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 86 iiR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~iA 122 (129)
-+=+.+++||+. .|++.+..+|=.||+.|+.+++.+-
T Consensus 34 avS~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~ 73 (306)
T 3fzv_A 34 SISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRKAQ 73 (306)
T ss_dssp CHHHHHHHHHHHC-CCCC---------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCeeEeecCCCCceECHhHHHHHHHHH
Confidence 345667888874 5666642357889999999988753
No 206
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=51.86 E-value=6 Score=31.80 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=51.8
Q ss_pred ChhHHHHHHHHHHHhcCC--------------CCCCCCCCCchHHH-hHHHHHHHHHHhCCCchhhhHHHhcccC--CCC
Q 033029 11 SPHEFVKAYSAHLKRSGK--------------FKELAPYDPDWYYV-RAASMARKIYLRQGLGVGSFRRIYGGSK--RNG 73 (129)
Q Consensus 11 ~~~~fI~~~A~~LK~~gk--------------~kE~aP~d~DW~Y~-R~ASilR~lYl~g~vGV~~lr~~YGg~k--~rG 73 (129)
-|+.+|++|-+.|..+|- .=+.||..++||-+ |...-.=..-..+.-|+|.|...|-... .|.
T Consensus 50 g~~~vi~AL~~~vg~~GTLvmPt~t~~~~dp~~w~~ppvp~~~~~~ir~~~p~fDp~~tps~~~G~l~E~fr~~pg~~RS 129 (268)
T 3ijw_A 50 GAVAVVEALMEVITEEGTIIMPTQSSDLSDPKHWSRPPVPEEWWQIIRDNVPAFEPHITPTRAMGKVVECFRTYPNVVRS 129 (268)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEECCCGGGSCGGGCCSSCCCHHHHHHHHHHSCCBCTTTCCCSSSCHHHHHHHTSTTCEEC
T ss_pred CHHHHHHHHHHHhCCCCeEEEeccccccCChhhhcCCCCcHHHHHHHHhhCCCCCcccCcccccChHHHHHHHCCCCeec
Confidence 378999999999998775 24778998898854 3322211112223447888887773221 133
Q ss_pred CCCCcccCCchhHHHHHHH
Q 033029 74 SRPPHFCKSSGAIARHILQ 92 (129)
Q Consensus 74 ~~P~h~~~asg~iiR~~lq 92 (129)
..|.+.--|-|.-...+++
T Consensus 130 ~HP~~Sfaa~G~~A~~i~~ 148 (268)
T 3ijw_A 130 NHPLGSFAAWGRHAEEITV 148 (268)
T ss_dssp SCTTTCEEEEETTHHHHHT
T ss_pred CCCCcceEEeCcCHHHHhc
Confidence 4677777777777777665
No 207
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=51.74 E-value=8.4 Score=31.46 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCce
Q 033029 45 ASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRR 109 (129)
Q Consensus 45 ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~ 109 (129)
..|+..++-++-+.+..+.... .-|-.-+|+.|++|++.|+|++.. .||.
T Consensus 300 ~~ll~~l~~~p~~t~~~~~~~~--------------gvS~~Ta~r~L~~L~e~GiL~~~~-~gR~ 349 (373)
T 2qc0_A 300 HELVQVIFEQPYCRIQNLVESG--------------LAKRQTASVYLKQLCDIGVLEEVQ-SGKE 349 (373)
T ss_dssp HHHHHHHHHCSEEEHHHHHHTS--------------SSCHHHHHHHHHHHHHTTSCEEC---CCS
T ss_pred HHHHHHHHhCCcccHHHHHHHh--------------CCCHHHHHHHHHHHHHCCcEEEec-CCCc
Confidence 3455555544444455555443 345668999999999999999874 4664
No 208
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=51.65 E-value=15 Score=27.51 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=36.7
Q ss_pred HhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhC---CceeecCC----CCceeCcch
Q 033029 42 VRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNM---NIIDIEPK----GGRRITSSG 114 (129)
Q Consensus 42 ~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~---g~vek~~~----~GR~lT~~G 114 (129)
.+-..++..|.-.|++. .-.+.- |+.++ -+=..+++||+. .|++..+. +|..+|+.|
T Consensus 22 ~~~l~~f~~v~~~gs~~--~aa~~l------~~s~~--------~~s~~i~~le~~lg~~L~~R~~~~lsg~~~~lt~~g 85 (265)
T 1b9m_A 22 PRRISLLKHIALSGSIS--QGAKDA------GISYK--------SAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYG 85 (265)
T ss_dssp HHHHHHHHHHHHHSSHH--HHHHHH------TCCHH--------HHHHHHHHHHHHHTSCCEEECCCC-----EEECHHH
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHh------CCCHH--------HHHHHHHHHHHHhCCCeEEecCCCCCCCceEECHHH
Confidence 45566777777777642 222221 22221 222335666654 78888764 589999999
Q ss_pred HhhHHHH
Q 033029 115 QRDLDQV 121 (129)
Q Consensus 115 ~~~lD~i 121 (129)
+.++...
T Consensus 86 ~~l~~~~ 92 (265)
T 1b9m_A 86 QRLIQLY 92 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988664
No 209
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=51.29 E-value=10 Score=27.87 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCC-------CCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHH
Q 033029 15 FVKAYSAHLKRSGKFKELAPY-------DPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIA 87 (129)
Q Consensus 15 fI~~~A~~LK~~gk~kE~aP~-------d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~ii 87 (129)
-|..+++-+.. .+++-|. +.||-++|- |||||+|--+..-.|=.. .-+..-.+...++.
T Consensus 24 ~Iq~y~~~i~~---ar~Rl~e~L~~lI~~~~W~~~Rn-------~IhGPlg~lr~~m~~l~~----~Llp~dqk~A~~la 89 (133)
T 3ls0_A 24 QLQVYVNPIAV---ARDGMEKRLQGLIADQNWVDTQT-------YIHGPLGQLRRDMLGLAS----SLLPKDQDKAKTLA 89 (133)
T ss_dssp HHHHHHHHHHH---HHHHHHHTHHHHHHTTCHHHHHH-------HHHTTTTTHHHHHHHHHH----HSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHhHHHHHHHhhhcchHHHHH-------HHhchHHHHHHHHHHHHH----hcChhhhHHHHHHH
Confidence 35555555554 3444455 679999998 999999866555444221 02333445667899
Q ss_pred HHHHHHHHhCCceeecCC
Q 033029 88 RHILQQLQNMNIIDIEPK 105 (129)
Q Consensus 88 R~~lqqLE~~g~vek~~~ 105 (129)
+..+..||++..-.+..+
T Consensus 90 k~l~~~L~~LD~AA~~~n 107 (133)
T 3ls0_A 90 KEVFGHLERLDAAAKDRN 107 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999988776554
No 210
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=50.70 E-value=16 Score=23.46 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=33.5
Q ss_pred HHHHHHHhC---CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec
Q 033029 47 MARKIYLRQ---GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 47 ilR~lYl~g---~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~ 103 (129)
|+.-|--++ ++-+..|++..|-. .+-|++.|..||+.|+|+..
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs--------------~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTP--------------KKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCC--------------HHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEec
Confidence 555555667 78888898887742 24789999999999999875
No 211
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=49.79 E-value=18 Score=26.62 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHHH
Q 033029 85 AIARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 85 ~iiR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~iA 122 (129)
+-+=+.+++||+. .|++.+. +|=.||+.|+.+++.+-
T Consensus 31 ~avS~~i~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a~ 70 (305)
T 3fxq_A 31 PALSAAIQQLEDELKAPLLVRTK-RGVSLTSFGQAFMKHAR 70 (305)
T ss_dssp HHHHHHHHHHHHHHTSCSEEECS-SSEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEEecC-CCccCCHhHHHHHHHHH
Confidence 3556778899874 6788764 58899999999887643
No 212
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=48.44 E-value=53 Score=25.12 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=41.0
Q ss_pred hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhH
Q 033029 54 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 118 (129)
Q Consensus 54 ~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~l 118 (129)
.||+.+..|....|-. -..++.+|..|..+|+++...++.-.+|+.++...
T Consensus 36 ~g~~t~~elA~~~~~~--------------~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~ 86 (332)
T 3i53_A 36 AGHRTAAEIASAAGAH--------------ADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLR 86 (332)
T ss_dssp TTCCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGS
T ss_pred cCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHh
Confidence 5799999999987632 23799999999999999987656678888777653
No 213
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=48.33 E-value=11 Score=25.04 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=20.7
Q ss_pred CCCCCcccccChhHHHHHHHHHHHhcCC
Q 033029 1 MATARTVKDVSPHEFVKAYSAHLKRSGK 28 (129)
Q Consensus 1 m~~~~tv~DV~~~~fI~~~A~~LK~~gk 28 (129)
|+. ++|+||| ++.+.+|-..=+..|.
T Consensus 1 M~~-i~IRnvp-dev~~~L~~rAa~~G~ 26 (73)
T 3h87_C 1 MSD-VLIRDIP-DDVLASLDAIAARLGL 26 (73)
T ss_dssp -CC-CCCCCCC-HHHHHHHHHHHHHHTC
T ss_pred CCc-eeecCCC-HHHHHHHHHHHHHcCC
Confidence 775 8999999 7778888888777776
No 214
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=48.09 E-value=11 Score=31.03 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCce
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRR 109 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~ 109 (129)
.++..++-++-+.++.+.+..| .|..-+++.|++|+++|+|++.. +||.
T Consensus 301 ~ll~~l~~~p~~t~~~~~~~~~--------------~S~~TA~r~L~~L~e~GiL~~~~-~gR~ 349 (373)
T 3eqx_A 301 ELVQVIFEQPYCRIQNLVESGL--------------AKRQTASVYLKQLCDIGVLEEVQ-SGKE 349 (373)
T ss_dssp HHHHHHHHCSEEEHHHHHHTSS--------------SCHHHHHHHHHHHHHTTSCEEC---CCS
T ss_pred HHHHHHHHCCCccHHHHHHHhC--------------cCHHHHHHHHHHHHHCCcEEEeC-CCCc
Confidence 3566666566666666666543 34457899999999999999874 4554
No 215
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=45.97 E-value=34 Score=24.60 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC------CCCcee------Ccc
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP------KGGRRI------TSS 113 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~------~~GR~l------T~~ 113 (129)
.||+.|.-++.+.+..|....|- |.+-++.-|+.||+.|+|+... +-|+.+ +-.
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lgl--------------S~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~ 96 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITGL--------------AESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVK 96 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEEC
Confidence 58888888899999999999864 3457899999999999997521 225532 111
Q ss_pred hHhhHHHHHHHhhh
Q 033029 114 GQRDLDQVAGRIVV 127 (129)
Q Consensus 114 G~~~lD~iA~~i~~ 127 (129)
...++.++..+..
T Consensus 97 -~~~~~~v~~~l~~ 109 (171)
T 2e1c_A 97 -AGKYSEVASNLAK 109 (171)
T ss_dssp -TTCHHHHHHHHHT
T ss_pred -cchHHHHHHHHhc
Confidence 3456777777654
No 216
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=45.84 E-value=42 Score=25.59 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=40.2
Q ss_pred hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhH
Q 033029 54 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 118 (129)
Q Consensus 54 ~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~l 118 (129)
.||..+..|....|- +-..++.+|..|..+|+++...++.-.+|+.+..++
T Consensus 39 ~~~~t~~ela~~~~~--------------~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l~ 89 (334)
T 2ip2_A 39 SGIDSDETLAAAVGS--------------DAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLR 89 (334)
T ss_dssp TTCCSHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHTTS
T ss_pred CCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHhCCceEecCCCeEecCHHHHHHh
Confidence 489999999998764 225899999999999999887555677887665443
No 217
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=44.59 E-value=27 Score=27.03 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeC
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 111 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT 111 (129)
+++=.++.+|+..+..|+...|= +.+.+++.|..|++.|+|++.. +|++.-
T Consensus 168 ~~l~~~l~~~~~t~~~la~~~~l--------------~~~~V~~~l~~L~~~~~v~~~~-~~~~~~ 218 (232)
T 2qlz_A 168 AILHYLLLNGRATVEELSDRLNL--------------KEREVREKISEMARFVPVKIIN-DNTVVL 218 (232)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHTC--------------CHHHHHHHHHHHTTTSCEEEET-TTEEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHhcCCeEEec-CCeEEe
Confidence 36667788999999999998764 4579999999999999998664 466543
No 218
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=43.57 E-value=14 Score=27.76 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=24.4
Q ss_pred HHHHHHHHHhCCceeecCCCCceeCcchHhhHH
Q 033029 87 ARHILQQLQNMNIIDIEPKGGRRITSSGQRDLD 119 (129)
Q Consensus 87 iR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD 119 (129)
-|++-+-|...|+|+..+ .||.+|+.|.+.+.
T Consensus 282 ~~~l~~~~i~~~li~~~~-~g~~~~~~~~~~~~ 313 (324)
T 1hqc_A 282 EEVHEPYLIRQGLLKRTP-RGRVPTELAYRHLG 313 (324)
T ss_dssp HHHTHHHHHHTTSEEEET-TEEEECHHHHHHTT
T ss_pred HHHHhHHHHHhcchhcCC-ccceecHHHHHHHh
Confidence 333334488899999875 69999999998874
No 219
>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Probab=42.02 E-value=4 Score=27.65 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=9.2
Q ss_pred CCCCCCchHHHhH
Q 033029 32 LAPYDPDWYYVRA 44 (129)
Q Consensus 32 ~aP~d~DW~Y~R~ 44 (129)
.+-.|||||++|.
T Consensus 47 ~~~~~peW~lvr~ 59 (82)
T 1u3o_A 47 RPSERPGWCLVRT 59 (82)
T ss_dssp CTTSSTTEEEEEE
T ss_pred cCCCCCCEEEEEE
Confidence 3334899999874
No 220
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=41.31 E-value=16 Score=29.34 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=41.7
Q ss_pred HHHHHHHHh-C-CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCc-eeecCCCCceeCcc
Q 033029 46 SMARKIYLR-Q-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNI-IDIEPKGGRRITSS 113 (129)
Q Consensus 46 SilR~lYl~-g-~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~-vek~~~~GR~lT~~ 113 (129)
.||+.|.-. | ++....|+..+|- |..-|++.+++|++.|+ |+..+..|-+|.+.
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgv--------------Sr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~ 63 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNI--------------SRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTCEEEEETTTEEEEEEC
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCC--------------CHHHHHHHHHHHHhcCCeEEEeCCCeEEEecC
Confidence 577777653 3 7888999998875 34689999999999999 55556678888763
No 221
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=41.24 E-value=18 Score=26.67 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=37.8
Q ss_pred CCchHHHhHHHHHHHHHHhCC-C-chhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHh
Q 033029 36 DPDWYYVRAASMARKIYLRQG-L-GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQN 96 (129)
Q Consensus 36 d~DW~Y~R~ASilR~lYl~g~-v-GV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~ 96 (129)
+++-|+-.|..++++.|-.-+ . --....+.++--.++|+.+ .+|+.+|++|+.
T Consensus 111 ~~~de~e~a~~l~~Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~--------~~I~~vl~~l~~ 165 (177)
T 3e3v_A 111 TDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQSLLTKGFSY--------DIIDTIIQELDL 165 (177)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCH--------HHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHCCCCH--------HHHHHHHHHCcC
Confidence 444456888899998875422 1 1244667888888999855 699999999873
No 222
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=40.89 E-value=40 Score=23.74 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=49.7
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC------CCCcee--------C
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP------KGGRRI--------T 111 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~------~~GR~l--------T 111 (129)
.|++.|--++++.+..|....|- |.+-+|.-++.||+.|+|.... +-|..+ .
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~--------------s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~ 72 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGL--------------STTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTA 72 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEc
Confidence 47777778899999999998764 4468999999999999998421 224432 2
Q ss_pred cchHhhHHHHHHHhhhC
Q 033029 112 SSGQRDLDQVAGRIVVA 128 (129)
Q Consensus 112 ~~G~~~lD~iA~~i~~~ 128 (129)
+.....++.++..+..-
T Consensus 73 ~~~~~~~~~~~~~l~~~ 89 (162)
T 3i4p_A 73 SHSIEWLKRFSEVVSEF 89 (162)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHhcC
Confidence 33345688888877543
No 223
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=40.75 E-value=24 Score=26.19 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=38.1
Q ss_pred HHhHHH-HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec---CCCCc
Q 033029 41 YVRAAS-MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE---PKGGR 108 (129)
Q Consensus 41 Y~R~AS-ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~---~~~GR 108 (129)
+.|||- +|.-|+.++|+.-..+..+.|-. ...++++|.+.|||+.. +..||
T Consensus 92 LS~aaLEtLaiIay~qPiTR~eI~~irGv~-----------------~~~~v~~L~e~glI~e~g~~~~~GR 146 (162)
T 1t6s_A 92 LSRSMLEVLAVVAWHQPVTKGEIQQIRGAS-----------------PDYSIDRLLARGLIEVRGRADSPGR 146 (162)
T ss_dssp HHHHHHHHHHHHHHHCSEEHHHHHHHHTCC-----------------CCSHHHHHHHTTSEEEEEECSSTTC
T ss_pred cCHHHHHHHHHHHHcCCcCHHHHHHHHCCC-----------------HHHHHHHHHHCCCEEEccccCCCCC
Confidence 455554 89999999999999999997653 22367789999999742 23566
No 224
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=40.35 E-value=5.9 Score=24.43 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=17.8
Q ss_pred CchhHHHHHHHHHHhCCceeecCC
Q 033029 82 SSGAIARHILQQLQNMNIIDIEPK 105 (129)
Q Consensus 82 asg~iiR~~lqqLE~~g~vek~~~ 105 (129)
.-|..+|---|++|.+.||...++
T Consensus 15 sqgrmvrvrrqsmeqldlikitpd 38 (50)
T 3tvt_B 15 SQGRMVRVRRQDMEQLDLIKITPD 38 (50)
T ss_pred ccceEEEeeecchhhcCeEEecCC
Confidence 346677777899999999965443
No 225
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=40.22 E-value=26 Score=27.98 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~ 103 (129)
.|++.|+ ++++.-..|.+..|= |..-+-+++++|++.|+|+..
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gl--------------s~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGL--------------TKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEee
Confidence 4899999 999999999998765 335788999999999999753
No 226
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=39.37 E-value=45 Score=26.57 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec
Q 033029 45 ASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 45 ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~ 103 (129)
..|++.|+-++++....|.+..|= |..-+-+++++|++.|+|+..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~l--------------s~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQL--------------APASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTC--------------CHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEee
Confidence 569999999999999999998654 345788999999999999763
No 227
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=39.31 E-value=6.3 Score=29.40 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHH
Q 033029 86 IARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQV 121 (129)
Q Consensus 86 iiR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~i 121 (129)
-+=+.+++||+. .|++.+. +|=.||+.|+.+++..
T Consensus 31 avS~~I~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a 68 (312)
T 2h9b_A 31 PLSRQIQNLEEELGIQLLERGS-RPVKTTPEGHFFYQYA 68 (312)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHhCCEeEeeCC-CCceECHHHHHHHHHH
Confidence 344567888876 6777664 5788999999888654
No 228
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=39.22 E-value=19 Score=23.94 Aligned_cols=58 Identities=21% Similarity=0.149 Sum_probs=38.9
Q ss_pred CcccccChhHHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCch
Q 033029 5 RTVKDVSPHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSG 84 (129)
Q Consensus 5 ~tv~DV~~~~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg 84 (129)
+++-|++..+.|...-.+|... +- +....+++..|-. .
T Consensus 6 ~~~~~~~~~~~v~~~i~~L~~~---------~~-------------------~Ta~~IAkkLg~s--------------K 43 (75)
T 1sfu_A 6 CTVNDAEIFSLVKKEVLSLNTN---------DY-------------------TTAISLSNRLKIN--------------K 43 (75)
T ss_dssp CCCCSHHHHHHHHHHHHTSCTT---------CE-------------------ECHHHHHHHTTCC--------------H
T ss_pred cccchHHHHHHHHHHHHhCCCC---------cc-------------------hHHHHHHHHHCCC--------------H
Confidence 6677887777776666665543 11 3334455555543 3
Q ss_pred hHHHHHHHHHHhCCceeecC
Q 033029 85 AIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 85 ~iiR~~lqqLE~~g~vek~~ 104 (129)
+.|-++|=.||+.|+|.+.+
T Consensus 44 ~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 44 KKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHCCCEecCC
Confidence 47899999999999998875
No 229
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=38.34 E-value=44 Score=27.07 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec
Q 033029 44 AASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 44 ~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~ 103 (129)
...|++.|+-++++....|.+..|= |..-+-++++.|++.|+|+..
T Consensus 41 ~~~il~~l~~~~~~sr~ela~~~gl--------------s~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 41 AGRVYKLIDQKGPISRIDLSKESEL--------------APASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEec
Confidence 3569999999999999999998765 335788999999999999764
No 230
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=36.35 E-value=28 Score=22.57 Aligned_cols=91 Identities=15% Similarity=0.130 Sum_probs=48.8
Q ss_pred cccChhHHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHhC-----CCchhhhHHHhcccCCCCCCCCcccCC
Q 033029 8 KDVSPHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQ-----GLGVGSFRRIYGGSKRNGSRPPHFCKS 82 (129)
Q Consensus 8 ~DV~~~~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~g-----~vGV~~lr~~YGg~k~rG~~P~h~~~a 82 (129)
.++..+++++.+-++|+ .| ++|.--.-|-......++-+--.| .+....++........+|..|+ +...
T Consensus 5 ~~~t~~~~~~~fl~~l~-~~----~s~~Ti~~Y~~~l~~f~~~l~~~~~~~l~~it~~~i~~y~~~l~~~~~s~~-Ti~~ 78 (117)
T 3nrw_A 5 PSLSPREARDRYLAHRQ-TD----AADASIKSFRYRLKHFVEWAEERDITAMRELTGWKLDEYETFRRGSDVSPA-TLNG 78 (117)
T ss_dssp CCCCHHHHHHHHHHHHT-TT----SCHHHHHHHHHHHHHHHHHHHHTTCCSGGGCCHHHHHHHHHHHHTSSCCHH-HHHH
T ss_pred CCCCHHHHHHHHHHHHH-cC----CCHHHHHHHHHHHHHHHHHHHHcCCCChHHCCHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 45666778888888887 32 333322222111112222111122 2333344444444444555554 2233
Q ss_pred chhHHHHHHHHHHhCCceeecC
Q 033029 83 SGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~~ 104 (129)
-=+.+|..++-|.+.|+|+.++
T Consensus 79 ~ls~lr~f~~~l~~~g~i~~nP 100 (117)
T 3nrw_A 79 EMQTLKNWLEYLARIDVVDEDL 100 (117)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTS
T ss_pred HHHHHHHHHHHHHHcCCcccCH
Confidence 3468899999999999999887
No 231
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=36.00 E-value=20 Score=24.29 Aligned_cols=32 Identities=16% Similarity=0.462 Sum_probs=25.1
Q ss_pred cCCchhHHHHHHHHHHhCCceeecCC-CCceeC
Q 033029 80 CKSSGAIARHILQQLQNMNIIDIEPK-GGRRIT 111 (129)
Q Consensus 80 ~~asg~iiR~~lqqLE~~g~vek~~~-~GR~lT 111 (129)
..-+-.++.++.+.|+..+.||+.++ .||.++
T Consensus 47 ~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~ 79 (89)
T 1i96_V 47 PELGERILNRVTEDLKDLAVVEMKPEMLGRDMN 79 (89)
T ss_pred HHHHHHHHHHHHHHhhhheEEecCccccCCEEE
Confidence 34456889999999999999998874 577643
No 232
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=35.63 E-value=26 Score=24.14 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHhCCceeecC
Q 033029 83 SGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~~ 104 (129)
+.+-+..+|+.||+.|+|+...
T Consensus 64 s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 64 SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp CHHHHHHHHHHHHHTTSSEECC
T ss_pred CHHHHHHHHHHHHHCCCEEEEe
Confidence 4467888999999999998754
No 233
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=35.24 E-value=11 Score=26.56 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceee
Q 033029 46 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI 102 (129)
Q Consensus 46 SilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek 102 (129)
.|+..+--.+.+....|...+|-. .+-+|.+|+.||+.|+|+.
T Consensus 17 ~Il~~l~~~~~ls~~eLa~~lgvS--------------r~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 17 NILNELQKDGRISNVELSKRVGLS--------------PTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHHCSSCCTTGGGTSSSCC--------------TTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCcEEE
Confidence 466644445678888888877643 2467899999999999983
No 234
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=34.01 E-value=8.6 Score=27.60 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHHH
Q 033029 87 ARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 87 iR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~iA 122 (129)
+=+.+++||+. .|++.+. +|=.||+.|+.+++.+-
T Consensus 29 vS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~ 66 (300)
T 3mz1_A 29 VTNLIQGLEAHLRTKLLNRTT-RRVLVTPDGALYYERAA 66 (300)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHhCCeeEecCC-CceeeCHhHHHHHHHHH
Confidence 34567788864 5666653 57789999998877643
No 235
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=33.29 E-value=20 Score=26.25 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=15.6
Q ss_pred hHHHhHHHHHHHHHHhCC
Q 033029 39 WYYVRAASMARKIYLRQG 56 (129)
Q Consensus 39 W~Y~R~ASilR~lYl~g~ 56 (129)
=.+-|||-+||++|.+..
T Consensus 43 E~~CrAatvLrq~Y~~H~ 60 (129)
T 2d48_A 43 ETFCRAATVLRQFYSHHE 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 467999999999999854
No 236
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.21 E-value=23 Score=24.25 Aligned_cols=44 Identities=14% Similarity=0.013 Sum_probs=32.8
Q ss_pred HHHHHHHhCC--CchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC
Q 033029 47 MARKIYLRQG--LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 47 ilR~lYl~g~--vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~ 104 (129)
|+..|.-.|. +=...|++.-+=. -.++-+||+.||..|||...+
T Consensus 42 Vy~~I~~aGn~GIw~kdL~~~tnL~--------------~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 42 VYQIIEDAGNKGIWSRDVRYKSNLP--------------LTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHhCCC--------------HHHHHHHHHHHHhCCCEEEec
Confidence 6667777666 4456888875532 258999999999999998654
No 237
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=33.03 E-value=9.1 Score=28.62 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHH
Q 033029 87 ARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQV 121 (129)
Q Consensus 87 iR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~i 121 (129)
+=+.+++||+. .|++.+. +|=.||+.|+.+++.+
T Consensus 45 vS~~I~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a 81 (315)
T 1uth_A 45 VSNSLKRLRTALNDDLFLRTS-KGMEPTPYALHLAEPV 81 (315)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHhCCcceeecC-CCccCCHHHHHHHHHH
Confidence 44567778875 5666553 4778888888887654
No 238
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=32.93 E-value=11 Score=28.63 Aligned_cols=54 Identities=15% Similarity=0.146 Sum_probs=36.6
Q ss_pred CCchHHHhHHHHHHHHHHhC--CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhC
Q 033029 36 DPDWYYVRAASMARKIYLRQ--GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNM 97 (129)
Q Consensus 36 d~DW~Y~R~ASilR~lYl~g--~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~ 97 (129)
+++.|+-.|..++++.|-.- .-.-..-++.++.-.++|+.+ .+|+.++++++..
T Consensus 154 ~~~~e~e~a~~l~~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~--------~~I~~vl~~~~~~ 209 (221)
T 3d5l_A 154 TPEVQAELAKKLALKLFRRYRNQPERRREQKVQQGLTTKGFSS--------SVYEMIKDEVVPQ 209 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHTTCCH--------HHHHHHTTC----
T ss_pred CHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhCCCCH--------HHHHHHHHhccch
Confidence 45556678888999987542 222445788888889999866 5899999887544
No 239
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=32.77 E-value=9.2 Score=28.80 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CceeecCCCCceeCcchHhhHHHH
Q 033029 87 ARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQV 121 (129)
Q Consensus 87 iR~~lqqLE~~---g~vek~~~~GR~lT~~G~~~lD~i 121 (129)
+=+.+++||+. .|++.+. +|=.||+.|+.+++..
T Consensus 32 vS~~I~~LE~~lG~~Lf~R~~-r~v~lT~~G~~l~~~a 68 (313)
T 2h98_A 32 LSRQIQKLEEELGIQLFERGF-RPAKVTEAGMFFYQHA 68 (313)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHhCCeeEEcCC-CCeEECHhHHHHHHHH
Confidence 44567888876 6777664 5889999999888754
No 240
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=32.54 E-value=61 Score=22.47 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=31.6
Q ss_pred CchhHHHHHHHHHHhCCceeecCCCCc----eeCcchHhhHHHH
Q 033029 82 SSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQRDLDQV 121 (129)
Q Consensus 82 asg~iiR~~lqqLE~~g~vek~~~~GR----~lT~~G~~~lD~i 121 (129)
+|-.-.|+.|..||++-+|.... ||| .||.-|+..+...
T Consensus 46 ~~TA~~RKsL~rLEAi~FI~~V~-G~r~HK~~LT~YG~~A~~qa 88 (101)
T 4asn_A 46 YSTANFRKTLNKLEAIHFIGTVT-GGKEHKLYLTEYGQQAVQQA 88 (101)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEC-SSSSCEEEECHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHhhhcc-cCccceeehHHhhHHHHHHH
Confidence 34478999999999999998764 565 6999999988654
No 241
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=32.27 E-value=53 Score=25.84 Aligned_cols=50 Identities=10% Similarity=0.039 Sum_probs=39.1
Q ss_pred hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCC-ceeCcchHhh
Q 033029 54 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG-RRITSSGQRD 117 (129)
Q Consensus 54 ~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~G-R~lT~~G~~~ 117 (129)
.||+.+..|...-|-. -..++.+|..|..+|+++.++++. -.+|+.++.+
T Consensus 69 ~g~~t~~eLA~~~g~~--------------~~~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~L 119 (369)
T 3gwz_A 69 EGPRTATALAEATGAH--------------EQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVL 119 (369)
T ss_dssp TSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSSEECSSTTEEECCHHHHTT
T ss_pred CCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHhCCCEEEeCCCceEecCHHHHHH
Confidence 5789999999987642 236999999999999999876544 5888877653
No 242
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=30.31 E-value=63 Score=22.43 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHH
Q 033029 83 SGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 122 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA 122 (129)
+..-+=++|++|++.|+|+.. ++.|+=.=...|-++|
T Consensus 182 sr~tvsR~l~~L~~~g~I~~~---~~~i~i~d~~~L~~~a 218 (220)
T 3dv8_A 182 HREVITRMLRYFQVEGLVKLS---RGKITILDSKRLETLQ 218 (220)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE---TTEEEESCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCEEeC---CCEEEEeCHHHHHHHh
Confidence 345677899999999999875 3344433344455554
No 243
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=29.76 E-value=31 Score=23.40 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.3
Q ss_pred cccccChhHHHHHHHHHHHhcC
Q 033029 6 TVKDVSPHEFVKAYSAHLKRSG 27 (129)
Q Consensus 6 tv~DV~~~~fI~~~A~~LK~~g 27 (129)
-+|||+-+.-...+|++|++.|
T Consensus 7 V~YDI~~~kr~~kv~k~L~~yG 28 (101)
T 2ivy_A 7 IFYDITDDNLRNRVAEFLKKKG 28 (101)
T ss_dssp EEEEECCHHHHHHHHHHHHHTT
T ss_pred EEEeCCChHHHHHHHHHHHHhC
Confidence 4699999999999999999998
No 244
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=29.61 E-value=25 Score=29.40 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=15.6
Q ss_pred chHHHhHHHHHHHHHHh
Q 033029 38 DWYYVRAASMARKIYLR 54 (129)
Q Consensus 38 DW~Y~R~ASilR~lYl~ 54 (129)
+=||-+||.|||.+.++
T Consensus 296 ~~yyd~~a~il~~~~~~ 312 (330)
T 3t7a_A 296 MKYYDDCAKILGNIVMR 312 (330)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 67999999999999886
No 245
>3rq9_A TSI2, type VI secretion immunity protein; antitoxin, TSE2-BI protein; 1.00A {Pseudomonas aeruginosa} PDB: 3vpv_A
Probab=29.47 E-value=16 Score=24.82 Aligned_cols=27 Identities=30% Similarity=0.639 Sum_probs=22.7
Q ss_pred cccChhHHHHHHHHHHHhcCCCCCCCCCCC
Q 033029 8 KDVSPHEFVKAYSAHLKRSGKFKELAPYDP 37 (129)
Q Consensus 8 ~DV~~~~fI~~~A~~LK~~gk~kE~aP~d~ 37 (129)
+|..+|+|-++|++-+.+ .-++|||+.
T Consensus 44 fdlAAdDLk~AY~~a~~~---Ys~LPpY~~ 70 (85)
T 3rq9_A 44 YDLAADDLKNAYEQALGQ---YSGLPPYDR 70 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH---CSSCCCHHH
T ss_pred hHHhhHHHHHHHHHHHHh---hcCCCCHHH
Confidence 677789999999998887 679999874
No 246
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=29.19 E-value=39 Score=25.98 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=41.0
Q ss_pred hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHH
Q 033029 54 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLD 119 (129)
Q Consensus 54 ~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD 119 (129)
.+|+.+..|...-|-. | ..++.+|..|..+|+++... ++..+|+.+...|+
T Consensus 54 ~~~~t~~elA~~~~~~------~--------~~l~rlLr~L~~~gll~~~~-~~y~~t~~s~~~l~ 104 (352)
T 3mcz_A 54 QTGRTPAEVAASFGMV------E--------GKAAILLHALAALGLLTKEG-DAFRNTALTERYLT 104 (352)
T ss_dssp TSCBCHHHHHHHHTCC------H--------HHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHS
T ss_pred CCCCCHHHHHHHhCcC------h--------HHHHHHHHHHHHCCCeEecC-CeeecCHHHHhhcc
Confidence 4688899998887642 2 35999999999999999875 67899999987663
No 247
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=28.71 E-value=65 Score=24.33 Aligned_cols=48 Identities=17% Similarity=0.044 Sum_probs=38.3
Q ss_pred CCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhh
Q 033029 55 QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRD 117 (129)
Q Consensus 55 g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~ 117 (129)
||..+..|...-|-. -..++..|..|..+|+++.+ .+.-.+|+.+...
T Consensus 38 ~~~t~~ela~~~~~~--------------~~~l~r~L~~L~~~g~l~~~-~~~y~~t~~~~~~ 85 (335)
T 2r3s_A 38 GIESSQSLAQKCQTS--------------ERGMRMLCDYLVIIGFMTKQ-AEGYRLTSDSAMF 85 (335)
T ss_dssp SEECHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEE-TTEEEECHHHHHH
T ss_pred CCCCHHHHHHHhCCC--------------chHHHHHHHHHHhcCCeEec-CCEEecCHHHHHH
Confidence 889999999987642 35899999999999999875 3567888877433
No 248
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.62 E-value=13 Score=26.29 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=15.8
Q ss_pred ccCCchhHHHHHHHHHHhCCceeecCC
Q 033029 79 FCKSSGAIARHILQQLQNMNIIDIEPK 105 (129)
Q Consensus 79 ~~~asg~iiR~~lqqLE~~g~vek~~~ 105 (129)
|..-.-.++.++.+.|+..+.||+.++
T Consensus 59 ~~e~g~~lL~r~~~~l~dv~~vE~~Pk 85 (112)
T 2crq_A 59 SEEETEEIFNQILQTMPDIATFSSRPK 85 (112)
T ss_dssp CHHHHHHHHHHHHTTSTTTCEEEEEEE
T ss_pred cHHHHHHHHHHHHHHhhhhhEEecccc
Confidence 444445566666666666666665554
No 249
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=26.58 E-value=76 Score=24.71 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=33.5
Q ss_pred HHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeec
Q 033029 47 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 47 ilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~ 103 (129)
+|.-|+.++|+.-..+..+.|-. + -.++++|.+.|||+..
T Consensus 105 tLaiIAy~QPITR~eI~~irGv~------~-----------~~~v~~Lle~gLI~e~ 144 (219)
T 2z99_A 105 TLAVVAYRQPVTRARVSAVRGVN------V-----------DAVMRTLLARGLITEV 144 (219)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTSC------C-----------HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC------H-----------HHHHHHHHHCCCEEEc
Confidence 89999999999999999986643 2 3678899999999754
No 250
>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1
Probab=26.44 E-value=39 Score=23.34 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=23.7
Q ss_pred ccCCchhHHHHHHHHHHhCCceeecC-C-CCcee
Q 033029 79 FCKSSGAIARHILQQLQNMNIIDIEP-K-GGRRI 110 (129)
Q Consensus 79 ~~~asg~iiR~~lqqLE~~g~vek~~-~-~GR~l 110 (129)
|..-+-.++..+.+.|+..+.||+.+ + .||.+
T Consensus 57 h~e~g~~lL~r~~~~l~d~~~ve~~p~k~eGr~m 90 (100)
T 2ife_A 57 HQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQM 90 (100)
T ss_dssp CSSHHHHHHHHHHHHHTTTEEESCCCCCCCSSCC
T ss_pred CHHHHHHHHHHHHHHhhhheEEecCcccccCceE
Confidence 34455678888889999999998876 3 47654
No 251
>3stq_A TSI2, putative uncharacterized protein; coiled-coil, toxin-antitoxin system, TSI2-TSE2, T6SS, toxin toxin; 2.28A {Pseudomonas aeruginosa}
Probab=26.26 E-value=19 Score=25.12 Aligned_cols=27 Identities=30% Similarity=0.639 Sum_probs=22.7
Q ss_pred cccChhHHHHHHHHHHHhcCCCCCCCCCCC
Q 033029 8 KDVSPHEFVKAYSAHLKRSGKFKELAPYDP 37 (129)
Q Consensus 8 ~DV~~~~fI~~~A~~LK~~gk~kE~aP~d~ 37 (129)
+|..+|+|-++|++-+.+ .-++|||+.
T Consensus 69 fdlAAdDLk~AY~~a~~~---Ys~LPpY~~ 95 (102)
T 3stq_A 69 YDLAADDLKNAYEQALGQ---YSGLPPYDR 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH---CBSCCCHHH
T ss_pred hHhhhHHHHHHHHHHHHh---hcCCCCHHH
Confidence 677789999999998887 679999874
No 252
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=25.53 E-value=48 Score=25.79 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=39.4
Q ss_pred hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhH
Q 033029 54 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 118 (129)
Q Consensus 54 ~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~l 118 (129)
.||+.+..|...-|-. -..+|.+|..|..+|+++. ..+.-.+|+.++.++
T Consensus 53 ~g~~t~~elA~~~g~~--------------~~~l~rlLr~l~~~g~l~~-~~~~y~~t~~s~~l~ 102 (348)
T 3lst_A 53 DGPRTPAELAAATGTD--------------ADALRRVLRLLAVRDVVRE-SDGRFALTDKGAALR 102 (348)
T ss_dssp TSCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEE-ETTEEEECTTTGGGS
T ss_pred CCCCCHHHHHHHhCcC--------------HHHHHHHHHHHHhCCCEEe-cCCEEecCHHHHHHh
Confidence 4789999999876642 2379999999999999998 445678898876553
No 253
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=25.14 E-value=62 Score=22.38 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHH
Q 033029 83 SGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 123 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~ 123 (129)
+..-+=++|++|++.|+|+... +.|+=.=...|-++|.
T Consensus 176 sr~tvsR~l~~l~~~g~I~~~~---~~i~i~d~~~L~~~a~ 213 (216)
T 4ev0_A 176 SRETVSRVLHALAEEGVVRLGP---GTVEVREAALLEEIAF 213 (216)
T ss_dssp CHHHHHHHHHHHHHTTSEEEET---TEEEESCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCEEecC---CEEEEeCHHHHHHHhh
Confidence 3456778999999999998753 2343333344444444
No 254
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=25.00 E-value=38 Score=24.91 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcc----cCCchhHHHHHHHHHHhCC
Q 033029 40 YYVRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHF----CKSSGAIARHILQQLQNMN 98 (129)
Q Consensus 40 ~Y~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~----~~asg~iiR~~lqqLE~~g 98 (129)
-++-...++|++| +..++..|.+.||-.... ...|. +.+...|.+.+++.++++|
T Consensus 159 ~~iDt~~l~~~~~--~~~~L~~l~~~~gi~~~~--~~~H~Al~Da~~ta~l~~~l~~~~~~~~ 217 (224)
T 2f96_A 159 SSFDTATLAGLAY--GQTVLAKACQAAGMEFDN--REAHSARYDTEKTAELFCGIVNRWKEMG 217 (224)
T ss_dssp EEEEHHHHHHHHH--SCCSHHHHHHHTTCCCCT--TSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeeHHHHHHHHc--CCCCHHHHHHHcCCCcCC--CCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455567788876 667899999999764210 12333 3344567777777777764
No 255
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.90 E-value=40 Score=23.70 Aligned_cols=40 Identities=10% Similarity=0.175 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCceeecCCCCceeC---cchHhhHHHHHHHhh
Q 033029 87 ARHILQQLQNMNIIDIEPKGGRRIT---SSGQRDLDQVAGRIV 126 (129)
Q Consensus 87 iR~~lqqLE~~g~vek~~~~GR~lT---~~G~~~lD~iA~~i~ 126 (129)
+|.+.+=||+=-=|.-.=..||-++ ..|...||+|+..+.
T Consensus 33 ~k~a~kFLe~GdKVKvti~RGRE~~~~~e~g~~lL~r~~~~l~ 75 (112)
T 2crq_A 33 SKQIQQWIEKKYHVQVTIKRRKDAEQSEEETEEIFNQILQTMP 75 (112)
T ss_dssp HHHHHHHHHTTCEEEEEEECCTTCSCCHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHCCCEEEEEEECCccccccHHHHHHHHHHHHHHhh
Confidence 5677777776655542222699998 689999999998863
No 256
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=24.84 E-value=34 Score=23.32 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=21.5
Q ss_pred hhHHHhcccCCCCCCCCcccC-CchhHHHHHHHHHHhCCce
Q 033029 61 SFRRIYGGSKRNGSRPPHFCK-SSGAIARHILQQLQNMNII 100 (129)
Q Consensus 61 ~lr~~YGg~k~rG~~P~h~~~-asg~iiR~~lqqLE~~g~v 100 (129)
.|-...|.++++- --+||.. -...-=|.+|..||++||=
T Consensus 26 ~LM~~LgA~~~~~-lgn~f~ey~v~dpPr~VLnKLE~~G~r 65 (83)
T 1jg5_A 26 ELMQQLGASKRRV-LGNNFYEYYVNDPPRIVLDKLECRGFR 65 (83)
T ss_dssp HHHHHTTCEEECC-TTCSSCEEEESSCHHHHHHHHHHTTCE
T ss_pred HHHHHhccceehh-hccccEEEEcCCChHHHHHHHhccCeE
Confidence 3445556665542 2223221 0111248899999999984
No 257
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=24.74 E-value=1.1e+02 Score=23.88 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=42.2
Q ss_pred HHHHHHH-hCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhH
Q 033029 47 MARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 118 (129)
Q Consensus 47 ilR~lYl-~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~l 118 (129)
|+..|-- .||+.+..|...-|-. | ..+|.+|..|..+|+++.+ .+.-.+|+.+.-++
T Consensus 40 ifd~L~~~~~~~t~~eLA~~~g~~------~--------~~l~rlLr~l~~~g~l~~~-~~~y~~t~~s~~L~ 97 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRTGLT------R--------YAAQVLLEASLTIGTILLE-EDRYVLAKAGWFLL 97 (363)
T ss_dssp HHHHHHTCTTCBCHHHHHHHHTCC------H--------HHHHHHHHHHHHHTSEEEE-TTEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHhCcC------H--------HHHHHHHHHHhhCCCeEec-CCEEecccchHHhh
Confidence 3344444 3789999999876532 2 3599999999999999886 45679999986444
No 258
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=24.66 E-value=96 Score=21.79 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=19.2
Q ss_pred CCchhHHHHHHHHHHhCCceeec
Q 033029 81 KSSGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 81 ~asg~iiR~~lqqLE~~g~vek~ 103 (129)
..+..-+=++|++|++.|+|+..
T Consensus 191 g~sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 191 NMTVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEeeC
Confidence 44566778899999999999876
No 259
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=24.53 E-value=70 Score=24.22 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCceeecCC
Q 033029 88 RHILQQLQNMNIIDIEPK 105 (129)
Q Consensus 88 R~~lqqLE~~g~vek~~~ 105 (129)
..+|++|+++|+|..++.
T Consensus 85 ~~~L~~L~~~g~l~~TPs 102 (185)
T 3v32_B 85 QHILRELEKKKILVFTPS 102 (185)
T ss_dssp THHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHCCCEEECCC
Confidence 588999999999998884
No 260
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=24.38 E-value=18 Score=26.61 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=23.8
Q ss_pred HHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCcee
Q 033029 50 KIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIID 101 (129)
Q Consensus 50 ~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~ve 101 (129)
+|||-||+ +|++.++ ..++++.+.|++.|-|-
T Consensus 4 kIYlAGP~--------f~~~e~~------------~~~~~i~~~L~~~G~Vl 35 (152)
T 4fyk_A 4 SVYFCGSI--------RGGREDQ------------ALYARIVSRLRRYGKVL 35 (152)
T ss_dssp EEEEECCS--------TTCCTTH------------HHHHHHHHHHTTTSEEC
T ss_pred eEEEECCC--------CCcHHHH------------HHHHHHHHHHHHcCccc
Confidence 78888883 5554432 58899999999999663
No 261
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=24.27 E-value=51 Score=22.05 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=18.7
Q ss_pred CCceeCcchHhhHHHHHHHhhh
Q 033029 106 GGRRITSSGQRDLDQVAGRIVV 127 (129)
Q Consensus 106 ~GR~lT~~G~~~lD~iA~~i~~ 127 (129)
+.-.||++++..||++|..+..
T Consensus 24 ~s~~L~~~~~~~L~~~a~~l~~ 45 (123)
T 3oon_A 24 NSFQILQKEYKKIDLIAKLLEK 45 (123)
T ss_dssp TSCCBCGGGHHHHHHHHHHHHH
T ss_pred CChhcCHHHHHHHHHHHHHHHH
Confidence 4558999999999999988754
No 262
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=23.45 E-value=82 Score=25.62 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=36.8
Q ss_pred ccChhHHHHHHHHHHHhcCCCCCCCCCCCchHHHhHHHHHHHHHHhC-----CCchhhhHHHhcccCC
Q 033029 9 DVSPHEFVKAYSAHLKRSGKFKELAPYDPDWYYVRAASMARKIYLRQ-----GLGVGSFRRIYGGSKR 71 (129)
Q Consensus 9 DV~~~~fI~~~A~~LK~~gk~kE~aP~d~DW~Y~R~ASilR~lYl~g-----~vGV~~lr~~YGg~k~ 71 (129)
-.++++..+.+.+.++... ...+.|.+-||||+.|-. |=-+ ++|+.+|.-..-|..+
T Consensus 272 l~d~~~q~~rf~~~~~~~~-~~g~~~~~~d~~yl~al~-----yG~PPhgG~glGiDRLvmll~g~~~ 333 (345)
T 3a5y_A 272 LTDAREQQQRFEQDNRKRA-ARGLPQHPIDQNLIEALK-----VGMPDCSGVALGVDRLVMLALGAET 333 (345)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HTTCCCCCCCHHHHHHHH-----HCCCSEEEEEEEHHHHHHHHHTCSS
T ss_pred eCCHHHHHHHHHHHHHHHH-hcCCChhhHHHHHHHHHh-----cCCCCCcEEEEcHHHHHHHHcCCCc
Confidence 3467777777777654431 123456677899998855 4222 3788898888777544
No 263
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=22.98 E-value=62 Score=22.66 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHhCCceeec
Q 033029 83 SGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~ 103 (129)
+..-+=++|++|++.|+|+..
T Consensus 180 sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 180 TRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp CHHHHHHHHHHHHHTTSEEES
T ss_pred cHHHHHHHHHHHHHCCCEEEc
Confidence 445677899999999999875
No 264
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=22.49 E-value=23 Score=24.18 Aligned_cols=32 Identities=13% Similarity=0.373 Sum_probs=24.9
Q ss_pred ccCCchhHHHHHHHHHHhCCceeecCC-CCcee
Q 033029 79 FCKSSGAIARHILQQLQNMNIIDIEPK-GGRRI 110 (129)
Q Consensus 79 ~~~asg~iiR~~lqqLE~~g~vek~~~-~GR~l 110 (129)
|..-+-.++.++.+.|+..+.||+.++ .||.+
T Consensus 51 h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m 83 (94)
T 1tig_A 51 HKEIGQRVLDRLSEACADIAVVETAPKMDGRNM 83 (94)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHhhhhhEEecCccccCCEE
Confidence 345566889999999999999998763 47754
No 265
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=22.47 E-value=20 Score=21.98 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=26.7
Q ss_pred CCcccCCchhHHHHHHHHHHhCCceeecCCCCceeCcchHhhHHHHHHH
Q 033029 76 PPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGR 124 (129)
Q Consensus 76 P~h~~~asg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~lD~iA~~ 124 (129)
|...+.|+|++|. .--..-...|++...+|+..+|.|-.-
T Consensus 11 ~C~~C~GsG~~i~---------~~C~~C~G~G~v~~~~G~~~~~~~~~~ 50 (53)
T 3lcz_A 11 TCPNCNGSGREEP---------EPCPKCLGKGVILTAQGSTLLHFIKKH 50 (53)
T ss_dssp ECTTTTTSCEETT---------EECTTTTTSSEEECHHHHHHHHHHHHH
T ss_pred cCcCCcccccCCC---------CcCCCCCCcEEEEEEeCchHHHHHHHH
Confidence 4566788888773 011112245899999999999988543
No 266
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=22.35 E-value=62 Score=22.29 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHhCCceeec
Q 033029 83 SGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~ 103 (129)
+..-+=++|++|++.|+|+..
T Consensus 180 sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 180 SRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHCCcEEeC
Confidence 455777899999999999975
No 267
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A*
Probab=22.30 E-value=1e+02 Score=23.17 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHhcCC-----CCCCCCCCCch------HHHhHHHHHHHH
Q 033029 13 HEFVKAYSAHLKRSGK-----FKELAPYDPDW------YYVRAASMARKI 51 (129)
Q Consensus 13 ~~fI~~~A~~LK~~gk-----~kE~aP~d~DW------~Y~R~ASilR~l 51 (129)
..|.+.+|+.+|.... ..| |...+| ||-+++..+|.+
T Consensus 112 ~~~~~~~a~r~~~~p~V~~el~NE--P~~~~~~~~~~~~~~~~~~~IR~~ 159 (293)
T 1tvn_A 112 VRFFEDVATKYGQYDNVIYEIYNE--PLQISWVNDIKPYAETVIDKIRAI 159 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEECCSC--CCSCCTTTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCeEEEEccCC--CCCCchHHHHHHHHHHHHHHHHhh
Confidence 4566777888876533 556 444455 899999999875
No 268
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=22.26 E-value=57 Score=21.74 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.7
Q ss_pred cccccChhHHHHHHHHHHHhcC
Q 033029 6 TVKDVSPHEFVKAYSAHLKRSG 27 (129)
Q Consensus 6 tv~DV~~~~fI~~~A~~LK~~g 27 (129)
-+|||+.+.=...+++.|++-|
T Consensus 8 V~YDI~~~krr~kv~k~l~~yG 29 (91)
T 3exc_X 8 VVYDVSDDSKRNKLANNLKKLG 29 (91)
T ss_dssp EEEECCSHHHHHHHHHHHHHTT
T ss_pred EEEeCCCchHHHHHHHHHHHhC
Confidence 4799998788899999999998
No 269
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=21.70 E-value=64 Score=20.65 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=25.4
Q ss_pred CCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceee
Q 033029 56 GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI 102 (129)
Q Consensus 56 ~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek 102 (129)
-+-|..+++.||=.+ .-+=.+|..||+-|+|.-
T Consensus 25 ildI~~~a~kygV~k--------------deV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 25 FLDIEHFSKVYGVEK--------------QEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp EEEHHHHHHHHCCCH--------------HHHHHHHHHHHHTTSEEE
T ss_pred EEeHHHHHHHhCCCH--------------HHHHHHHHHHHHCCCeec
Confidence 355778888888643 367789999999999863
No 270
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=21.24 E-value=67 Score=23.29 Aligned_cols=48 Identities=6% Similarity=0.112 Sum_probs=35.7
Q ss_pred HhHHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC
Q 033029 42 VRAASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 42 ~R~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~ 104 (129)
+|.. |++.|. ++|..|..|....|+ -+.+-+-+=|+.|+++|||+..+
T Consensus 24 ~Rl~-il~~L~-~~~~~~~~l~~~l~~-------------~~~~~~s~Hl~~L~~aglv~~~~ 71 (182)
T 4g6q_A 24 LRWR-ITQLLI-GRSLTTRELAELLPD-------------VATTTLYRQVGILVKAGVLMVTA 71 (182)
T ss_dssp HHHH-HHHHTT-TSCEEHHHHHHHCTT-------------BCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHH-HHHHHH-hCCCCHHHHHHHhcC-------------CCHHHHHHHHHHHHHCCCeEEEE
Confidence 4543 787774 799999999998763 13356666789999999998543
No 271
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=21.06 E-value=43 Score=26.24 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHhCCceeecCCCCceeCcchHhhH
Q 033029 83 SGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 118 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~~~~GR~lT~~G~~~l 118 (129)
+-.-+..+++.|..+|-++.+ | .||+-|+...
T Consensus 16 ~~~~l~~A~~~L~~LgAld~~---g-~lT~lG~~ma 47 (270)
T 3i4u_A 16 PMETLITAMEQLYTLGALDDE---G-LLTRLGRRMA 47 (270)
T ss_dssp HHHHHHHHHHHHHHHTSBCTT---S-CBCHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCcCCC---C-CccHHHHHHH
Confidence 345678999999999999643 3 6999998653
No 272
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=21.05 E-value=68 Score=22.00 Aligned_cols=21 Identities=14% Similarity=0.458 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHhCCceeec
Q 033029 83 SGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~ 103 (129)
+..-+=++|++|++.|+|+..
T Consensus 177 sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 177 SREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEec
Confidence 445667899999999999876
No 273
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=21.00 E-value=62 Score=21.66 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=18.5
Q ss_pred CCceeCcchHhhHHHHHHHhhh
Q 033029 106 GGRRITSSGQRDLDQVAGRIVV 127 (129)
Q Consensus 106 ~GR~lT~~G~~~lD~iA~~i~~ 127 (129)
+.-.||++++..||++|..+..
T Consensus 21 ~s~~l~~~~~~~L~~~a~~l~~ 42 (123)
T 3td3_A 21 NKSNIKDQYKPEIAKVAEKLSE 42 (123)
T ss_dssp TCCCCCGGGHHHHHHHHHHHHH
T ss_pred CChhcCHHHHHHHHHHHHHHHh
Confidence 3458999999999999988754
No 274
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=20.89 E-value=1.1e+02 Score=19.79 Aligned_cols=44 Identities=11% Similarity=0.323 Sum_probs=26.0
Q ss_pred CchhHHHHHHHHHHhCCc--eeecCCCCceeCc--ch------HhhHHHHHHHhhhCC
Q 033029 82 SSGAIARHILQQLQNMNI--IDIEPKGGRRITS--SG------QRDLDQVAGRIVVAP 129 (129)
Q Consensus 82 asg~iiR~~lqqLE~~g~--vek~~~~GR~lT~--~G------~~~lD~iA~~i~~~~ 129 (129)
.-|..++++|. .+|+ |+... -|+.++= .+ ...++.+|.+++.+|
T Consensus 17 pqG~av~~al~---~lG~~~v~~Vr-~gk~~~l~~~~~~~~~a~~~v~~~~~~LLaNp 70 (83)
T 2yx5_A 17 PEGRTIQRALN---FLGFNNVKEVQ-TYKMIDIIMEGENEEKVKEEVEEMCKKLLANP 70 (83)
T ss_dssp HHHHHHHHHHH---HTTCTTCCCCC-CCEEEEEEEC-CCHHHHHHHHHHHHHHTTCCT
T ss_pred cHHHHHHHHHH---HcCCCChhhEE-EEEEEEEEecCCCHHHHHHHHHHHHHHhccCC
Confidence 34555555444 6677 55443 4666544 33 477899998877554
No 275
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=20.85 E-value=68 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHhCCceeec
Q 033029 83 SGAIARHILQQLQNMNIIDIE 103 (129)
Q Consensus 83 sg~iiR~~lqqLE~~g~vek~ 103 (129)
+..-+=++|++|++.|+|+..
T Consensus 200 sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 200 SREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred cHHHHHHHHHHHHHCCCEEEC
Confidence 455677899999999999875
No 276
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=20.58 E-value=1.1e+02 Score=26.15 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCchhhhHHHhcccCCCCCCCCcccCCchhHHHHHHHHHHhCCceeecC
Q 033029 44 AASMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 104 (129)
Q Consensus 44 ~ASilR~lYl~g~vGV~~lr~~YGg~k~rG~~P~h~~~asg~iiR~~lqqLE~~g~vek~~ 104 (129)
||.|+-.|...|-+-++.+-..+-.+.. ..+.+....+-.-++.+|.+|-+.|||+..+
T Consensus 103 a~~I~~~ll~~G~~t~~~ll~~~~~~~~--~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~ 161 (534)
T 2xub_A 103 GELIVEELLLNGKLTMSAVVKKVADRLT--ETMEDGKTMDYAEVSNTFVRLADTHFVQRCP 161 (534)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHHHHHH--HTSSSSCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHhhcc--cccccccccCHHHHHHHHHHHHhCCCEEeCC
Confidence 5777778888898888888666654311 1122333456778999999999999999766
No 277
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=20.48 E-value=21 Score=26.66 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhC---CceeecCCCCc-eeCcchHhhHHHHH
Q 033029 86 IARHILQQLQNM---NIIDIEPKGGR-RITSSGQRDLDQVA 122 (129)
Q Consensus 86 iiR~~lqqLE~~---g~vek~~~~GR-~lT~~G~~~lD~iA 122 (129)
-+=+.+++||+. .|++.+. +|= .||+.|+.+++.+.
T Consensus 32 avS~~I~~LE~~lg~~Lf~R~~-r~~~~lT~~G~~l~~~a~ 71 (324)
T 1al3_A 32 GISKQVRMLEDELGIQIFARSG-KHLTQVTPAGQEIIRIAR 71 (324)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHhCCEEEEECC-CCcceeCHhHHHHHHHHH
Confidence 344567888875 5666553 354 58999999887643
Done!