BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033031
         (129 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BPB|A Chain A, Crystal Structure Of The Dimethylarginine
           Dimethylaminohydrolase H162g Adduct With S-Methyl-L-
           Thiocitrulline
 pdb|3BPB|B Chain B, Crystal Structure Of The Dimethylarginine
           Dimethylaminohydrolase H162g Adduct With S-Methyl-L-
           Thiocitrulline
          Length = 254

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 26  CEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET 85
           C  +       R G+  +  + V      K ER+   G     DI  VG    +G   E+
Sbjct: 74  CAIITRPGAESRRGETEIIEETVQRFYPGKVERIEAPGTVEAGDIMMVGDHFYIG---ES 130

Query: 86  AHEKSQKYKEGKSVLERFKVSG 107
           A   ++  ++  ++LE+  +SG
Sbjct: 131 ARTNAEGARQMIAILEKHGLSG 152


>pdb|3RHY|A Chain A, Crystal Structure Of The Dimethylarginine
           Dimethylaminohydrolase Adduct With
           4-Chloro-2-Hydroxymethylpyridine
 pdb|3RHY|B Chain B, Crystal Structure Of The Dimethylarginine
           Dimethylaminohydrolase Adduct With
           4-Chloro-2-Hydroxymethylpyridine
          Length = 254

 Score = 25.8 bits (55), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 26  CEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET 85
           C  +       R G+  +  + V      K ER+   G     DI  VG    +G   E+
Sbjct: 74  CAIITRPGAESRRGETEIIEETVQRFYPGKVERIEAPGTVEAGDIMMVGDHFYIG---ES 130

Query: 86  AHEKSQKYKEGKSVLERFKVSG 107
           A   ++  ++  ++LE+  +SG
Sbjct: 131 ARTNAEGARQMIAILEKHGLSG 152


>pdb|1H70|A Chain A, Ddah From Pseudomonas Aeruginosa. C249s Mutant Complexed
           With Citrulline
          Length = 255

 Score = 25.8 bits (55), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 26  CEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET 85
           C  +       R G+  +  + V      K ER+   G     DI  VG    +G   E+
Sbjct: 75  CAIITRPGAESRRGETEIIEETVQRFYPGKVERIEAPGTVEAGDIMMVGDHFYIG---ES 131

Query: 86  AHEKSQKYKEGKSVLERFKVSG 107
           A   ++  ++  ++LE+  +SG
Sbjct: 132 ARTNAEGARQMIAILEKHGLSG 153


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,081,336
Number of Sequences: 62578
Number of extensions: 149965
Number of successful extensions: 323
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 4
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)