Query 033031
Match_columns 129
No_of_seqs 105 out of 328
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 14:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eqt_A ATP-dependent RNA helic 96.5 0.0017 5.9E-08 48.7 3.4 91 12-104 12-104 (145)
2 3ga3_A Interferon-induced heli 96.3 0.0048 1.7E-07 45.6 4.7 86 13-102 12-99 (133)
3 2qfd_A Probable ATP-dependent 95.2 0.017 5.8E-07 43.2 3.9 79 12-102 26-116 (145)
4 3lrr_A Probable ATP-dependent 94.9 0.018 6E-07 41.9 3.0 87 12-102 4-94 (121)
5 4a2v_A RIG-I, retinoic acid in 94.5 0.027 9.1E-07 41.5 3.2 87 12-102 6-97 (131)
6 3e0o_A Peptide methionine sulf 92.8 0.049 1.7E-06 40.8 2.2 66 12-85 41-106 (144)
7 3hcg_A Peptide methionine sulf 92.7 0.066 2.3E-06 40.1 2.8 67 12-85 42-108 (146)
8 2kao_A Methionine-R-sulfoxide 92.3 0.074 2.5E-06 38.9 2.5 64 12-83 19-82 (124)
9 2kv1_A Methionine-R-sulfoxide 92.1 0.079 2.7E-06 38.7 2.5 64 12-83 19-82 (124)
10 3cxk_A Methionine-R-sulfoxide 92.1 0.06 2E-06 41.1 1.9 66 12-84 72-137 (164)
11 3mao_A Methionine-R-sulfoxide 91.0 0.063 2.2E-06 38.2 0.9 64 12-83 12-75 (105)
12 2k8d_A Peptide methionine sulf 88.3 0.088 3E-06 39.7 -0.0 67 12-85 60-126 (151)
13 2l1u_A MSRB2, methionine-R-sul 87.6 0.22 7.5E-06 37.1 1.8 65 12-84 36-108 (143)
14 3hcj_A MSRB, peptide methionin 87.6 0.13 4.3E-06 38.9 0.4 66 12-84 49-114 (154)
15 3e0m_A Peptide methionine sulf 85.1 0.36 1.2E-05 40.0 1.9 66 12-84 208-273 (313)
16 4gl2_A Interferon-induced heli 75.9 0.8 2.7E-05 39.0 1.0 87 12-102 585-673 (699)
17 4a2w_A RIG-I, retinoic acid in 69.5 0.96 3.3E-05 41.2 0.0 87 12-102 811-902 (936)
18 2ykg_A Probable ATP-dependent 62.6 3.9 0.00013 34.7 2.5 87 12-102 577-667 (696)
19 2lvu_A Zinc finger and BTB dom 52.3 4.2 0.00014 19.0 0.0 19 12-30 1-19 (26)
20 2m0e_A Zinc finger and BTB dom 40.5 5.9 0.0002 18.4 0.0 19 12-30 1-19 (29)
21 1rik_A E6APC1 peptide; E6-bind 37.6 6.6 0.00023 18.4 -0.1 19 12-30 1-19 (29)
22 1x6m_A GFA, glutathione-depend 36.7 43 0.0015 24.9 4.3 20 66-85 95-114 (196)
23 2lvr_A Zinc finger and BTB dom 42.5 7.5 0.00026 18.3 0.0 19 12-30 2-20 (30)
24 2lvt_A Zinc finger and BTB dom 41.6 7.9 0.00027 18.2 0.0 19 12-30 1-19 (29)
25 1fv5_A First zinc finger of U- 33.8 4.4 0.00015 22.5 -1.3 23 9-31 3-26 (36)
26 2kvh_A Zinc finger and BTB dom 33.8 5.7 0.00019 18.6 -0.7 18 12-29 2-19 (27)
27 2iyb_E Testin, TESS, TES; LIM 31.7 13 0.00043 22.4 0.5 23 14-42 33-55 (65)
28 1nyp_A Pinch protein; LIM doma 31.7 14 0.00049 21.9 0.8 12 14-25 32-43 (66)
29 1ogy_B Diheme cytochrome C NAP 31.1 17 0.00059 26.5 1.2 31 8-38 90-120 (130)
30 2kvf_A Zinc finger and BTB dom 30.7 6.5 0.00022 18.4 -0.8 18 12-29 2-19 (28)
31 1klr_A Zinc finger Y-chromosom 30.3 7.7 0.00026 18.1 -0.6 18 13-30 2-19 (30)
32 1srk_A Zinc finger protein ZFP 29.0 9.1 0.00031 19.0 -0.5 19 12-30 6-24 (35)
33 3fac_A Putative uncharacterize 28.8 36 0.0012 22.9 2.5 31 53-83 51-81 (118)
34 1paa_A Yeast transcription fac 28.5 7.2 0.00025 18.4 -0.9 18 13-30 2-19 (30)
35 2elm_A Zinc finger protein 406 28.5 8.9 0.00031 19.6 -0.5 19 11-29 7-25 (37)
36 2m0d_A Zinc finger and BTB dom 28.5 7.9 0.00027 18.0 -0.7 18 12-29 2-19 (30)
37 2m0f_A Zinc finger and BTB dom 28.4 8.1 0.00028 17.9 -0.7 18 12-29 1-18 (29)
38 1x61_A Thyroid receptor intera 28.4 20 0.00068 21.6 1.0 11 14-24 34-44 (72)
39 2eif_A IF-5A, protein (eukaryo 26.6 47 0.0016 23.6 2.9 30 35-64 39-68 (136)
40 2egq_A FHL1 protein; LIM domai 26.3 18 0.00061 22.1 0.5 11 14-24 47-57 (77)
41 2elx_A Zinc finger protein 406 26.0 10 0.00034 18.6 -0.6 19 12-30 6-24 (35)
42 2elq_A Zinc finger protein 406 25.3 11 0.00038 18.8 -0.5 19 12-30 8-26 (36)
43 2d8z_A Four and A half LIM dom 25.2 22 0.00074 21.3 0.7 11 14-24 32-42 (70)
44 1x4l_A Skeletal muscle LIM-pro 24.6 25 0.00085 21.2 1.0 11 14-24 36-46 (72)
45 2kvg_A Zinc finger and BTB dom 24.6 7 0.00024 18.5 -1.4 18 12-29 2-19 (27)
46 1x68_A FHL5 protein; four-and- 23.9 24 0.0008 21.7 0.8 11 14-24 36-46 (76)
47 1ard_A Yeast transcription fac 23.4 8.2 0.00028 18.0 -1.3 17 13-29 2-18 (29)
48 1a7i_A QCRP2 (LIM1); LIM domai 23.1 35 0.0012 21.0 1.5 13 14-26 35-47 (81)
49 2cur_A Skeletal muscle LIM-pro 23.0 23 0.0008 21.2 0.6 11 14-24 32-42 (69)
50 1p7a_A BF3, BKLF, kruppel-like 22.6 10 0.00034 19.1 -1.1 18 12-29 10-27 (37)
51 2elp_A Zinc finger protein 406 22.6 17 0.00057 18.2 -0.1 19 11-29 7-26 (37)
52 2yu5_A Zinc finger protein 473 22.5 17 0.0006 19.0 -0.1 20 11-30 10-29 (44)
53 2elv_A Zinc finger protein 406 22.0 12 0.00042 18.6 -0.8 18 12-29 8-25 (36)
54 1iz6_A Initiation factor 5A; S 21.6 66 0.0023 22.9 2.9 30 35-64 35-64 (138)
55 2ehe_A Four and A half LIM dom 21.4 25 0.00087 21.7 0.5 17 15-31 17-33 (82)
56 1wyh_A SLIM 2, skeletal muscle 21.1 33 0.0011 20.5 1.0 12 14-25 34-45 (72)
57 2elo_A Zinc finger protein 406 20.4 11 0.00037 18.9 -1.2 20 11-30 7-26 (37)
58 2els_A Zinc finger protein 406 20.3 14 0.00048 18.4 -0.8 18 12-29 8-25 (36)
No 1
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=96.51 E-value=0.0017 Score=48.67 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=57.8
Q ss_pred ceEEeccCCCCCCCCCCcccc--cccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEeeccc
Q 033031 12 KIYSCKHCRTHLALCEDVVSK--SFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEK 89 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk--~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~A~e~ 89 (129)
-.+.|++|.+.++..+||-.- .-+=.-+++ |...+.+..++..-.....+...-..|.|.+|+..+|-....---+
T Consensus 12 vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~~m~yk~~~ 89 (145)
T 3eqt_A 12 VQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKSVK 89 (145)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEEEEEETTEE
T ss_pred eEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcccccccCCcEEEchhhChhhHhhEEecccc
Confidence 569999999999999998322 111000011 1133333222222111234456778899999999999887766566
Q ss_pred CcceecCeEEEEeee
Q 033031 90 SQKYKEGKSVLERFK 104 (129)
Q Consensus 90 sqkYKEGKfILE~~~ 104 (129)
=+-.|.-.|+||...
T Consensus 90 LP~LkIksFVve~~~ 104 (145)
T 3eqt_A 90 LPVLKVRSMLLETPQ 104 (145)
T ss_dssp EEEECGGGEEEEETT
T ss_pred CceEeEEEEEEEcCC
Confidence 788899999998744
No 2
>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A
Probab=96.30 E-value=0.0048 Score=45.63 Aligned_cols=86 Identities=20% Similarity=0.245 Sum_probs=56.8
Q ss_pred eEEeccCCCCCCCCCCccc--ccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEeecccC
Q 033031 13 IYSCKHCRTHLALCEDVVS--KSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKS 90 (129)
Q Consensus 13 ~y~C~~C~thLa~~~~lIS--k~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~A~e~s 90 (129)
.+.|++|.+.+++.+||-. ..-.=.-+++ |...+.+. +++.......+...-..|.|. |+..+|-....---+=
T Consensus 12 kllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~-~~~~~~k~f~d~~~~g~I~C~-Cgq~WG~~m~yk~~~L 87 (133)
T 3ga3_A 12 TFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKALQKKCADYQINGEIICK-CGQAWGTMMVHKGLDL 87 (133)
T ss_dssp EEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEE-CCTTTCEECSSCEEEEEEEET-TSCEEEEEEEETTEEE
T ss_pred EEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEec-CCCCccchhccccCCceEEEe-cCChhhhhEEeccccC
Confidence 4899999999999999832 2211011111 12444443 333222224667788899999 9999998776655557
Q ss_pred cceecCeEEEEe
Q 033031 91 QKYKEGKSVLER 102 (129)
Q Consensus 91 qkYKEGKfILE~ 102 (129)
+-.|.-.|+||.
T Consensus 88 P~LkIksFVve~ 99 (133)
T 3ga3_A 88 PCLKIRNFVVVF 99 (133)
T ss_dssp EEECGGGEEEEE
T ss_pred ceEEEEEEEEEc
Confidence 888999999885
No 3
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Probab=95.22 E-value=0.017 Score=43.25 Aligned_cols=79 Identities=19% Similarity=0.321 Sum_probs=56.1
Q ss_pred ceEEeccCCCCCCCCCCc----------ccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeee--cCCCce
Q 033031 12 KIYSCKHCRTHLALCEDV----------VSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCV--GCGSIV 79 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l----------ISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~L 79 (129)
-.+.|++|.+.+++.+|| +.+.|. ..+.+. +..-....-+..+-..|+|. +|+..+
T Consensus 26 v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~--~~~~~k~f~d~~~~g~I~C~~~~Cg~~W 93 (145)
T 2qfd_A 26 KKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSR--PHPKPKQFSSFEKRAKIFCARQNCSHDW 93 (145)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEE--ECSSCCCCSSEEEEEEEEECSTTTCCEE
T ss_pred eEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEc--CCcccchhhceeCCceEEeCCcccCcch
Confidence 459999999999999999 445554 233333 11111124455677899999 999999
Q ss_pred eeeEEeecccCcceecCeEEEEe
Q 033031 80 GWKYETAHEKSQKYKEGKSVLER 102 (129)
Q Consensus 80 GWkY~~A~e~sqkYKEGKfILE~ 102 (129)
|-....---+-+-.|.-.|+||.
T Consensus 94 G~~m~yk~~~lP~LkIksFVv~~ 116 (145)
T 2qfd_A 94 GIHVKYKTFEIPVIKIESFVVED 116 (145)
T ss_dssp EEEEEETTEEEEEECGGGEEEEC
T ss_pred hceEEEccccCceEEEEEEEEEe
Confidence 98776555557788888999975
No 4
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=94.85 E-value=0.018 Score=41.87 Aligned_cols=87 Identities=22% Similarity=0.324 Sum_probs=56.2
Q ss_pred ceEEeccCCCCCCCCCCc--ccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeee--cCCCceeeeEEeec
Q 033031 12 KIYSCKHCRTHLALCEDV--VSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCV--GCGSIVGWKYETAH 87 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l--ISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~LGWkY~~A~ 87 (129)
..+.|++|.+.+++.+|| |...-+=.-+++ |...+.+..-+. .+. .-...+-..|.|. +|+..+|-....--
T Consensus 4 ~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~ 79 (121)
T 3lrr_A 4 KKLLCRKCKALACYTADVRVIEESHYTVLGDA--FKECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT 79 (121)
T ss_dssp EEEEETTTCCEEEEGGGEEEETTTEEEECSHH--HHTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEETT
T ss_pred EEEECCCCCeEEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEecc
Confidence 458999999999999998 322211001111 112233322222 222 3456788899999 99999998776655
Q ss_pred ccCcceecCeEEEEe
Q 033031 88 EKSQKYKEGKSVLER 102 (129)
Q Consensus 88 e~sqkYKEGKfILE~ 102 (129)
-+=+-.|.-.|+||.
T Consensus 80 ~~LP~LkI~sfvve~ 94 (121)
T 3lrr_A 80 FEIPVIKIESFVVED 94 (121)
T ss_dssp EEEEEECGGGEEEEE
T ss_pred ccCceEEEEEEEEEe
Confidence 557888999999886
No 5
>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A
Probab=94.47 E-value=0.027 Score=41.49 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=53.1
Q ss_pred ceEEeccCCCCCCCCCCc--ccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeee--cCCCceeeeEEeec
Q 033031 12 KIYSCKHCRTHLALCEDV--VSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCV--GCGSIVGWKYETAH 87 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l--ISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~LGWkY~~A~ 87 (129)
-.+.|++|.+.+++.+|| |.+.-+=.-+++ |...+.+..-+. .+. .-...+-..|.|. +|+..+|-....--
T Consensus 6 ~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~ 81 (131)
T 4a2v_A 6 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEA--FKERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT 81 (131)
T ss_dssp CEEEETTTCCEEEEGGGEEEETTTEEEECSSG--GGGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEETT
T ss_pred eEEEccCCCeeEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeecC
Confidence 458999999999999998 322211000111 112222211111 122 2355678889999 99999997665443
Q ss_pred cc-CcceecCeEEEEe
Q 033031 88 EK-SQKYKEGKSVLER 102 (129)
Q Consensus 88 e~-sqkYKEGKfILE~ 102 (129)
-+ =+-.|.-.|+||.
T Consensus 82 ~~~LP~LkIksFVve~ 97 (131)
T 4a2v_A 82 FDNLPVIKIKSFVMES 97 (131)
T ss_dssp EEEEEEECGGGEEECC
T ss_pred cccCceEeEEEEEEEe
Confidence 33 5678888898875
No 6
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=92.84 E-value=0.049 Score=40.75 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=40.5
Q ss_pred ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEe
Q 033031 12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET 85 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~ 85 (129)
-+|.|+.|.++|=++++ .|....|=--.+..+-+ .+...+++. -|+. =..|.|..|+.+||--...
T Consensus 41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D 106 (144)
T 3e0o_A 41 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMI-RTEVRSRTADSHLGHVFND 106 (144)
T ss_dssp EEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSC-EEEEEETTTCCEEEEEESC
T ss_pred EEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCce-EEEEEcCCCCCccCCccCC
Confidence 67999999999877653 45544554333433333 222333332 2332 2479999999999965543
No 7
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=92.71 E-value=0.066 Score=40.11 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=40.1
Q ss_pred ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEe
Q 033031 12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET 85 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~ 85 (129)
-+|.|+.|.++|=+++ ..|....|=--.+..+-.-.+...+++. -|+. =..|.|..|+.+||--...
T Consensus 42 G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D 108 (146)
T 3hcg_A 42 GIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMR-RTEVRSHAADSHLGHVFPD 108 (146)
T ss_dssp EEEEETTTCCEEEEGG----GEECCSSSSCEESSCSSGGGEEEEEEEE--TTEE-EEEEEETTTCCEEEEEESC
T ss_pred EEEEecCCCcccccCc----ccccCCCCChhhccccCCCceEEeecCC--CCcE-EEEEEeCCCCCccCceeCC
Confidence 6799999999987664 3455455543333333211122223332 1332 3589999999999966543
No 8
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=92.25 E-value=0.074 Score=38.91 Aligned_cols=64 Identities=17% Similarity=0.328 Sum_probs=37.5
Q ss_pred ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeE
Q 033031 12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKY 83 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY 83 (129)
-+|.|+.|.++|=++++ .|....|=--.++.+-.-.+...++.. + +.-..|.|..|+.+||=-.
T Consensus 19 GiY~C~~Cg~pLF~S~~----KFdSG~GWPSF~~pi~~~~v~~~~D~~---~-~~RtEV~C~~Cg~HLGHVF 82 (124)
T 2kao_A 19 GVYVCAKCSYELFSSHS----KYAHSSPWPAFTETIHPDSVTKCPEKN---R-PEALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp CEEEESSSCCCCCCTTT----SCCCCCSSCCBSCCCCCSSCEEEECSS---C-TTCEEEECTTTTCCCEEEC
T ss_pred EEEEeCCCCCccccCcc----cccCCCCChhhCccCCccceEEEecCC---C-CCEEEEEeCCCCCcCCccC
Confidence 67999999999987764 354444433333333211111111211 1 1236999999999999655
No 9
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=92.13 E-value=0.079 Score=38.75 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=36.8
Q ss_pred ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeE
Q 033031 12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKY 83 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY 83 (129)
-+|.|+.|.++|=++++= |....|=--.++.+-.-.+-...++ .++. ...|.|+.|+.+||=-.
T Consensus 19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF 82 (124)
T 2kv1_A 19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF 82 (124)
T ss_dssp EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence 589999999999877653 5444443222332211111111121 1111 35899999999999543
No 10
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=92.11 E-value=0.06 Score=41.09 Aligned_cols=66 Identities=29% Similarity=0.528 Sum_probs=39.8
Q ss_pred ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEE
Q 033031 12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYE 84 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~ 84 (129)
-+|.|+.|.++|=++++ .|....|=.-.+..+-+-.+...++.. -|+ .-..|.|..|+.+||--..
T Consensus 72 GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm-~RtEV~C~~Cg~HLGHVF~ 137 (164)
T 3cxk_A 72 GIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGM-TRVEVRCNQCGAHLGHVFE 137 (164)
T ss_dssp EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGC-CEEEEEETTTCCEEEEEES
T ss_pred eEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCc-EEEEEEeCCCCCccCcccC
Confidence 57999999999877653 455445544334433221122223322 133 3457999999999996553
No 11
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=90.98 E-value=0.063 Score=38.23 Aligned_cols=64 Identities=17% Similarity=0.374 Sum_probs=37.5
Q ss_pred ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeE
Q 033031 12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKY 83 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY 83 (129)
-+|.|+.|.++|=+++ ..|....|=--.++.+-.-.+...++. .+ +.-..|.|..|+.+||--.
T Consensus 12 G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~---~~-~~RtEV~C~~C~~HLGHVF 75 (105)
T 3mao_A 12 GVYVCAKCGYELFSSR----SKYAHSSPWPAFTETIHADSVAKRPEH---NR-SEALKVSCGKCGNGLGHEF 75 (105)
T ss_dssp EEEEETTTCCEEEEGG----GEECCSSSSCEESCCSSTTSEEEEECT---TS-TTEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCCCccccCC----cccCCCCCChhhccccCCCceEEEecC---CC-CCEEEEEeCCCCCccCccc
Confidence 6799999999986655 345544554333333321111111121 11 1246999999999999655
No 12
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.34 E-value=0.088 Score=39.66 Aligned_cols=67 Identities=25% Similarity=0.562 Sum_probs=40.1
Q ss_pred ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEe
Q 033031 12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYET 85 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~ 85 (129)
-+|.|+.|.++|=++++ .|....|=--.+..+-.-.+...+++.+ |+. =..|.|..|+.+||--...
T Consensus 60 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D 126 (151)
T 2k8d_A 60 GIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRSL--GMV-RCEVLCARCDAHLGHVFDD 126 (151)
T ss_dssp SEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBTT--SSC-EEEEEETTEEEEEEEEEEC
T ss_pred EEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCCC--Cce-EEEEEeCCCCCcCCcccCC
Confidence 67999999999877653 4655555443344432212222223221 222 2579999999999965543
No 13
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=87.65 E-value=0.22 Score=37.14 Aligned_cols=65 Identities=18% Similarity=0.415 Sum_probs=36.9
Q ss_pred ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecc--------cCcccceeeeeccEEEEeeeeecCCCceeeeE
Q 033031 12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVS--------VGEKEERLMMTGMHTVADIFCVGCGSIVGWKY 83 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~--------~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY 83 (129)
-+|.|+.|.++|=++++ .|....|=.- |.+.+++. +...+++. -|+. =..|.|..|+.+||=-.
T Consensus 36 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF 107 (143)
T 2l1u_A 36 GMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGHVF 107 (143)
T ss_dssp EEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEEEE
T ss_pred eEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCccc
Confidence 57999999999876643 3543344322 22333211 11111211 1222 35799999999999655
Q ss_pred E
Q 033031 84 E 84 (129)
Q Consensus 84 ~ 84 (129)
.
T Consensus 108 ~ 108 (143)
T 2l1u_A 108 P 108 (143)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=87.59 E-value=0.13 Score=38.93 Aligned_cols=66 Identities=24% Similarity=0.475 Sum_probs=37.3
Q ss_pred ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEE
Q 033031 12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYE 84 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~ 84 (129)
-+|.|+.|.++|=++++ .|....|=--.+..+-.-.+...++.. -|+. =..|.|..|+.+||--..
T Consensus 49 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~ 114 (154)
T 3hcj_A 49 GVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFP 114 (154)
T ss_dssp EEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEES
T ss_pred EEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccC
Confidence 67999999999977653 344444432223322111111111211 1222 258999999999996553
No 15
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=85.07 E-value=0.36 Score=40.02 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=39.1
Q ss_pred ceEEeccCCCCCCCCCCcccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEE
Q 033031 12 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYE 84 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~ 84 (129)
-+|.|+.|.++|=+++ ..|....|=--.+..+-.-.+...+++. -|+. =..|.|..|+.+||--..
T Consensus 208 G~Y~c~~cg~pLF~S~----~KfdSg~GWPSF~~~i~~~~v~~~~D~s--~gm~-RtEv~c~~c~~HLGHVF~ 273 (313)
T 3e0m_A 208 GIYVDITTGEPLFFAK----DKFASGCGWPSFSRPLSKELIHYYKDLS--HGME-RIEVRSRSGSAHLGHVFT 273 (313)
T ss_dssp EEEEETTTCCEEEEGG----GBCCCCSSSCEESSCSSGGGEEEEEECC--TTCC-EEEEEESSSCCEEEEEES
T ss_pred eEEEecCCCccccCCC----ccccCCCCCcccCcccCCCceEEeecCC--CCcE-EEEEECCCCCCccCcccC
Confidence 5799999999987664 3455445543333333111111222322 1332 358999999999996554
No 16
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=75.94 E-value=0.8 Score=38.99 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=45.7
Q ss_pred ceEEeccCCCCCCCCCCccc--ccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeeecCCCceeeeEEeeccc
Q 033031 12 KIYSCKHCRTHLALCEDVVS--KSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEK 89 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lIS--k~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY~~A~e~ 89 (129)
....|.+|.+.++..++|-. ..-+=.-.++ |.....+. .+.......-+......|+|. |+..+|-.+..---+
T Consensus 585 ~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~c~-~~~~~g~~~~~~~~~ 660 (699)
T 4gl2_A 585 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVR-ENKTLQKKCADYQINGEIICK-CGQAWGTMMVHKGLD 660 (699)
T ss_dssp EEEEESSSCCEEEEGGGCEEETTTEEECCCHH--HHHHCEEC----------------CEEECS-SSCEEEEECCCC---
T ss_pred eEEECCCCCcEEEehhheeeeccCceEeeCcc--hhhheeec-CCCccchhhhccccCCcEEee-cCchhhHHeeEcccc
Confidence 34789999999999998832 2111000011 12333332 222111234556677889999 999999776655555
Q ss_pred CcceecCeEEEEe
Q 033031 90 SQKYKEGKSVLER 102 (129)
Q Consensus 90 sqkYKEGKfILE~ 102 (129)
=+-.|.=.|++|.
T Consensus 661 ~p~~~~~~~~~~~ 673 (699)
T 4gl2_A 661 LPCLKIRNFVVVF 673 (699)
T ss_dssp CEEECGGGEEEEE
T ss_pred cceeEEEEEEEEc
Confidence 7777888888876
No 17
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=69.51 E-value=0.96 Score=41.16 Aligned_cols=87 Identities=18% Similarity=0.330 Sum_probs=0.0
Q ss_pred ceEEeccCCCCCCCCCCc--ccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeee--cCCCceeeeEEeec
Q 033031 12 KIYSCKHCRTHLALCEDV--VSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCV--GCGSIVGWKYETAH 87 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l--ISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~LGWkY~~A~ 87 (129)
-.+.|.+|...++..+|| |.++-+=.-+++| ...+++..-+. .+. .-.......|+|. +|+..+|-....--
T Consensus 811 ~~~~c~~c~~~~~~~~d~~~~~~~~~~~~~~~f--~~~~~~~~~~~-~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~ 886 (936)
T 4a2w_A 811 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT 886 (936)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEcCCCCceeechhhheeecCCCeEecChhh--hhheeccCCCC-cch-hhcccCCceEEeCccccChHhhhheEecc
Confidence 358999999999999998 2222111112222 22223322111 222 3445567889999 99999997664322
Q ss_pred -ccCcceecCeEEEEe
Q 033031 88 -EKSQKYKEGKSVLER 102 (129)
Q Consensus 88 -e~sqkYKEGKfILE~ 102 (129)
++=+-.|.-.|++|.
T Consensus 887 ~~~~p~~~~~~~~~~~ 902 (936)
T 4a2w_A 887 FDNLPVIKIKSFVMES 902 (936)
T ss_dssp ----------------
T ss_pred cccCceeeeeeEEEEe
Confidence 224566777788765
No 18
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=62.61 E-value=3.9 Score=34.67 Aligned_cols=87 Identities=20% Similarity=0.306 Sum_probs=54.1
Q ss_pred ceEEeccCCCCCCCCCCc--ccccccCCCCeeeeeeeeeecccCcccceeeeeccEEEEeeeee--cCCCceeeeEEeec
Q 033031 12 KIYSCKHCRTHLALCEDV--VSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCV--GCGSIVGWKYETAH 87 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l--ISk~F~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~h~V~DI~C~--~C~~~LGWkY~~A~ 87 (129)
....|.+|...++..++| +....+=.-.++ |.+.+.+..- +..+. .........|+|. .|+..+|-.+..--
T Consensus 577 ~~~~c~~c~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~-~~~~~-~~~~~~~~~~~c~~~~c~~~~g~~~~~~~ 652 (696)
T 2ykg_A 577 KKLLCRKCKALACYTADVRVIEDCHYTVLGDA--FKECFVSRPH-PKPKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT 652 (696)
T ss_dssp EEEEESSSCCEEEEGGGEEEETTTEEEECSTT--GGGTEEEEEE-EEEEE-CSSCEEEEEEEESSTTTCCEEEEEEEETT
T ss_pred hhhhccCCCceeeecchhhhhcCCCeeecCHH--hHhHeeeccC-Ccccc-ccccccCCceEeCCCCCCccccceEEEcc
Confidence 347899999999999886 332222112222 1122222211 11111 3345567889999 99999998885555
Q ss_pred ccCcceecCeEEEEe
Q 033031 88 EKSQKYKEGKSVLER 102 (129)
Q Consensus 88 e~sqkYKEGKfILE~ 102 (129)
-+=+.+|...|++|.
T Consensus 653 ~~lp~~~~~~~~~~~ 667 (696)
T 2ykg_A 653 FEIPVIKIESFVVED 667 (696)
T ss_dssp EEEEEECGGGEEEEE
T ss_pred eecceeeeeeEEEEe
Confidence 567778899999983
No 19
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=52.28 E-value=4.2 Score=18.95 Aligned_cols=19 Identities=21% Similarity=0.623 Sum_probs=14.5
Q ss_pred ceEEeccCCCCCCCCCCcc
Q 033031 12 KIYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (129)
++|.|..|..-+...+.|.
T Consensus 1 kp~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 1 KPYVCERCGKRFVQSSQLA 19 (26)
Confidence 3689999998877776664
No 20
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=40.50 E-value=5.9 Score=18.35 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=14.4
Q ss_pred ceEEeccCCCCCCCCCCcc
Q 033031 12 KIYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (129)
++|.|..|...+.....|.
T Consensus 1 k~~~C~~C~~~f~~~~~l~ 19 (29)
T 2m0e_A 1 KEHKCPHCDKKFNQVGNLK 19 (29)
T ss_dssp CCCCCSSCCCCCCTTTHHH
T ss_pred CCCcCCCCCcccCCHHHHH
Confidence 3588999998887776664
No 21
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=37.63 E-value=6.6 Score=18.39 Aligned_cols=19 Identities=11% Similarity=0.504 Sum_probs=14.0
Q ss_pred ceEEeccCCCCCCCCCCcc
Q 033031 12 KIYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (129)
++|.|..|...+...+.|.
T Consensus 1 k~~~C~~C~k~f~~~~~l~ 19 (29)
T 1rik_A 1 YKFACPECPKRFMRSDHLT 19 (29)
T ss_dssp CCEECSSSSCEESCSHHHH
T ss_pred CCccCCCCCchhCCHHHHH
Confidence 3689999988777666553
No 22
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=36.73 E-value=43 Score=24.86 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=15.8
Q ss_pred EEEeeeeecCCCceeeeEEe
Q 033031 66 TVADIFCVGCGSIVGWKYET 85 (129)
Q Consensus 66 ~V~DI~C~~C~~~LGWkY~~ 85 (129)
.+.--||..|++.|-|..+.
T Consensus 95 ~~~r~FC~~CGs~l~~~~~~ 114 (196)
T 1x6m_A 95 PIQRHRCRDCGVHMYGRIEN 114 (196)
T ss_dssp SEEEEEETTTCCEEEEEECC
T ss_pred CeeeEECCCCCCcCCccccc
Confidence 46677999999999776543
No 23
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=42.46 E-value=7.5 Score=18.27 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=14.2
Q ss_pred ceEEeccCCCCCCCCCCcc
Q 033031 12 KIYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (129)
++|.|..|...+.....|.
T Consensus 2 k~~~C~~C~k~f~~~~~l~ 20 (30)
T 2lvr_A 2 KPYVCIHCQRQFADPGALQ 20 (30)
Confidence 4689999988777666654
No 24
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=41.55 E-value=7.9 Score=18.24 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=14.1
Q ss_pred ceEEeccCCCCCCCCCCcc
Q 033031 12 KIYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (129)
++|.|..|..-+...+.|.
T Consensus 1 k~~~C~~C~k~f~~~~~l~ 19 (29)
T 2lvt_A 1 KPCQCVMCGKAFTQASSLI 19 (29)
Confidence 3688999988777766664
No 25
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=33.80 E-value=4.4 Score=22.45 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=17.7
Q ss_pred cCC-ceEEeccCCCCCCCCCCccc
Q 033031 9 LEG-KIYSCKHCRTHLALCEDVVS 31 (129)
Q Consensus 9 l~g-~~y~C~~C~thLa~~~~lIS 31 (129)
+.| ++|.|..|..-++..+.|..
T Consensus 3 ~~gekp~~C~~CgK~F~~~s~L~~ 26 (36)
T 1fv5_A 3 LLKPARFMCLPCGIAFSSPSTLEA 26 (36)
T ss_dssp SSSCCCCEETTTTEECSCHHHHHH
T ss_pred CCCccCeECCCCCCccCCHhHccC
Confidence 344 88999999988887776653
No 26
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=33.79 E-value=5.7 Score=18.62 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=13.2
Q ss_pred ceEEeccCCCCCCCCCCc
Q 033031 12 KIYSCKHCRTHLALCEDV 29 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (129)
++|.|..|..-+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (27)
T 2kvh_A 2 KPFSCSLCPQRSRDFSAM 19 (27)
T ss_dssp CCEECSSSSCEESSHHHH
T ss_pred cCccCCCcChhhCCHHHH
Confidence 569999998877665544
No 27
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=31.70 E-value=13 Score=22.39 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=14.3
Q ss_pred EEeccCCCCCCCCCCcccccccCCCCeee
Q 033031 14 YSCKHCRTHLALCEDVVSKSFHCRHGKAY 42 (129)
Q Consensus 14 y~C~~C~thLa~~~~lISk~F~G~~G~Ay 42 (129)
|.|..|+.+|.. ..|.-+.|+.|
T Consensus 33 F~C~~C~~~L~~------~~f~~~~g~~y 55 (65)
T 2iyb_E 33 FLCSCCSKCLIG------QKFMPVEGMVF 55 (65)
T ss_dssp SBCTTTCCBCTT------SCCEEETTEEE
T ss_pred EECCCCCCcCCC------CceEEECCEEe
Confidence 678888888852 23444445544
No 28
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.69 E-value=14 Score=21.95 Aligned_cols=12 Identities=17% Similarity=0.642 Sum_probs=9.6
Q ss_pred EEeccCCCCCCC
Q 033031 14 YSCKHCRTHLAL 25 (129)
Q Consensus 14 y~C~~C~thLa~ 25 (129)
|.|..|+.+|..
T Consensus 32 F~C~~C~~~L~~ 43 (66)
T 1nyp_A 32 FVCAKCEKPFLG 43 (66)
T ss_dssp CBCTTTCCBCSS
T ss_pred CEECCCCCCCCC
Confidence 788888888863
No 29
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=31.08 E-value=17 Score=26.48 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=26.3
Q ss_pred ccCCceEEeccCCCCCCCCCCcccccccCCC
Q 033031 8 NLEGKIYSCKHCRTHLALCEDVVSKSFHCRH 38 (129)
Q Consensus 8 ~l~g~~y~C~~C~thLa~~~~lISk~F~G~~ 38 (129)
.+..+.|-|..|+++=+...-||.-.|....
T Consensus 90 ~vsp~RYfCtQCHVpQada~PlV~N~F~~~~ 120 (130)
T 1ogy_B 90 DVSPRRYFCTACHVPQTNAQPLVTNEFRDML 120 (130)
T ss_dssp SCCSTTCCGGGTCCBCBCCCCSSCBCCBCSS
T ss_pred ccCccceecccccCccccCccccccccccch
Confidence 3456889999999999999999999998554
No 30
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.67 E-value=6.5 Score=18.42 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=13.3
Q ss_pred ceEEeccCCCCCCCCCCc
Q 033031 12 KIYSCKHCRTHLALCEDV 29 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (129)
++|.|..|...+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (28)
T 2kvf_A 2 RPYSCSVCGKRFSLKHQM 19 (28)
T ss_dssp CSEECSSSCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 468999998877665544
No 31
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=30.33 E-value=7.7 Score=18.07 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=13.9
Q ss_pred eEEeccCCCCCCCCCCcc
Q 033031 13 IYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 13 ~y~C~~C~thLa~~~~lI 30 (129)
.|.|..|...+...+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNLK 19 (30)
T ss_dssp CCCCSSSSCCCSCSHHHH
T ss_pred CccCCCCCCccCCHHHHH
Confidence 578999998887776654
No 32
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=28.98 E-value=9.1 Score=18.98 Aligned_cols=19 Identities=11% Similarity=0.475 Sum_probs=14.9
Q ss_pred ceEEeccCCCCCCCCCCcc
Q 033031 12 KIYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (129)
+.|.|..|..-+...+.|.
T Consensus 6 k~~~C~~C~k~f~~~~~l~ 24 (35)
T 1srk_A 6 RPFVCRICLSAFTTKANCA 24 (35)
T ss_dssp SCEECSSSCCEESSHHHHH
T ss_pred cCeeCCCCCcccCCHHHHH
Confidence 7899999998877766553
No 33
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=28.81 E-value=36 Score=22.90 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=19.4
Q ss_pred CcccceeeeeccEEEEeeeeecCCCceeeeE
Q 033031 53 GEKEERLMMTGMHTVADIFCVGCGSIVGWKY 83 (129)
Q Consensus 53 g~~~~r~m~TG~h~V~DI~C~~C~~~LGWkY 83 (129)
|+..-+....+...+.--||..|++.|-|..
T Consensus 51 g~~~l~~y~~s~~~~~r~FC~~CGs~l~~~~ 81 (118)
T 3fac_A 51 GAENLTLYQFGTRTAKHWFCRTCGIYTHHQR 81 (118)
T ss_dssp CGGGEEEECCTTSCSEEEEETTTCCEEEEEC
T ss_pred ChhHceEEecCCCCEeeEECCCCCccccCcc
Confidence 5433333332333456789999999998764
No 34
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.51 E-value=7.2 Score=18.42 Aligned_cols=18 Identities=17% Similarity=0.541 Sum_probs=13.1
Q ss_pred eEEeccCCCCCCCCCCcc
Q 033031 13 IYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 13 ~y~C~~C~thLa~~~~lI 30 (129)
+|.|..|...+...+.|.
T Consensus 2 ~~~C~~C~k~f~~~~~l~ 19 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLLI 19 (30)
T ss_dssp CSBCTTTCCBCSSSHHHH
T ss_pred CcCCcccCcccCChHHHH
Confidence 578999988777666553
No 35
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.51 E-value=8.9 Score=19.64 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=14.3
Q ss_pred CceEEeccCCCCCCCCCCc
Q 033031 11 GKIYSCKHCRTHLALCEDV 29 (129)
Q Consensus 11 g~~y~C~~C~thLa~~~~l 29 (129)
.++|.|..|..-++..+.|
T Consensus 7 ~k~~~C~~C~k~f~~~~~L 25 (37)
T 2elm_A 7 GHLYYCSQCHYSSITKNCL 25 (37)
T ss_dssp SCEEECSSSSCEEECHHHH
T ss_pred CcCeECCCCCcccCCHHHH
Confidence 3889999998876665544
No 36
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.46 E-value=7.9 Score=18.02 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=13.2
Q ss_pred ceEEeccCCCCCCCCCCc
Q 033031 12 KIYSCKHCRTHLALCEDV 29 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (129)
++|.|..|..-+.....|
T Consensus 2 k~~~C~~C~~~f~~~~~l 19 (30)
T 2m0d_A 2 KPYQCDYCGRSFSDPTSK 19 (30)
T ss_dssp CCEECTTTCCEESCHHHH
T ss_pred cCccCCCCCcccCCHHHH
Confidence 468999998877665544
No 37
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.44 E-value=8.1 Score=17.91 Aligned_cols=18 Identities=11% Similarity=0.508 Sum_probs=12.7
Q ss_pred ceEEeccCCCCCCCCCCc
Q 033031 12 KIYSCKHCRTHLALCEDV 29 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (129)
++|.|..|..-+.....|
T Consensus 1 ~~~~C~~C~k~f~~~~~l 18 (29)
T 2m0f_A 1 GPLKCRECGKQFTTSGNL 18 (29)
T ss_dssp CCEECTTTSCEESCHHHH
T ss_pred CCccCCCCCCccCChhHH
Confidence 368899998776655544
No 38
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.38 E-value=20 Score=21.61 Aligned_cols=11 Identities=36% Similarity=1.114 Sum_probs=8.8
Q ss_pred EEeccCCCCCC
Q 033031 14 YSCKHCRTHLA 24 (129)
Q Consensus 14 y~C~~C~thLa 24 (129)
|.|..|+.+|.
T Consensus 34 F~C~~C~~~L~ 44 (72)
T 1x61_A 34 FVCSTCRAQLR 44 (72)
T ss_dssp CBCSSSCCBCT
T ss_pred CcccccCCcCC
Confidence 78888888884
No 39
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=26.63 E-value=47 Score=23.63 Aligned_cols=30 Identities=20% Similarity=0.057 Sum_probs=24.9
Q ss_pred cCCCCeeeeeeeeeecccCcccceeeeecc
Q 033031 35 HCRHGKAYLFSKVVNVSVGEKEERLMMTGM 64 (129)
Q Consensus 35 ~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~ 64 (129)
.|++|.|+.=-++.|+..|...++.+.+|-
T Consensus 39 pGKhG~A~vr~k~knl~tG~~~e~tf~s~~ 68 (136)
T 2eif_A 39 PGKHGGAKARVVGIGIFEKVKKEFVAPTSS 68 (136)
T ss_dssp CCSSSCCEEEEEEEESSSCCEEEEEEETTS
T ss_pred CCCCCceEEEEEEEEcCCCCeEEEEecCCC
Confidence 488999998779999999998877776664
No 40
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.31 E-value=18 Score=22.11 Aligned_cols=11 Identities=45% Similarity=1.183 Sum_probs=7.6
Q ss_pred EEeccCCCCCC
Q 033031 14 YSCKHCRTHLA 24 (129)
Q Consensus 14 y~C~~C~thLa 24 (129)
|.|..|+.+|.
T Consensus 47 F~C~~C~~~L~ 57 (77)
T 2egq_A 47 FHCKKCSVNLA 57 (77)
T ss_dssp CBCSSSCCBCT
T ss_pred CEehhcCCCCC
Confidence 66777777665
No 41
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.05 E-value=10 Score=18.64 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=14.6
Q ss_pred ceEEeccCCCCCCCCCCcc
Q 033031 12 KIYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (129)
+.|.|..|..-+...+.|.
T Consensus 6 k~~~C~~C~k~f~~~~~L~ 24 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIRLR 24 (35)
T ss_dssp CSEECSSSCCEESSHHHHH
T ss_pred CCeECCCCcchhCCHHHHH
Confidence 7799999988777665553
No 42
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.26 E-value=11 Score=18.82 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=14.8
Q ss_pred ceEEeccCCCCCCCCCCcc
Q 033031 12 KIYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~lI 30 (129)
++|.|..|..-+.....|.
T Consensus 8 k~~~C~~C~k~f~~~~~l~ 26 (36)
T 2elq_A 8 KPFKCSLCEYATRSKSNLK 26 (36)
T ss_dssp CSEECSSSSCEESCHHHHH
T ss_pred CCccCCCCCchhCCHHHHH
Confidence 7899999998877665553
No 43
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.24 E-value=22 Score=21.31 Aligned_cols=11 Identities=36% Similarity=1.135 Sum_probs=8.7
Q ss_pred EEeccCCCCCC
Q 033031 14 YSCKHCRTHLA 24 (129)
Q Consensus 14 y~C~~C~thLa 24 (129)
|.|..|+.+|.
T Consensus 32 F~C~~C~~~L~ 42 (70)
T 2d8z_A 32 FVCTACRKQLS 42 (70)
T ss_dssp SBCSSSCCBCT
T ss_pred CccCCCCCcCC
Confidence 77888888875
No 44
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.65 E-value=25 Score=21.21 Aligned_cols=11 Identities=36% Similarity=1.065 Sum_probs=9.2
Q ss_pred EEeccCCCCCC
Q 033031 14 YSCKHCRTHLA 24 (129)
Q Consensus 14 y~C~~C~thLa 24 (129)
|.|..|+.+|.
T Consensus 36 F~C~~C~~~L~ 46 (72)
T 1x4l_A 36 FNCKKCSLSLV 46 (72)
T ss_dssp CBCSSSCCBCT
T ss_pred CEeccCCCcCC
Confidence 78888888886
No 45
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=24.64 E-value=7 Score=18.48 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=12.4
Q ss_pred ceEEeccCCCCCCCCCCc
Q 033031 12 KIYSCKHCRTHLALCEDV 29 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (129)
++|.|..|..-+...+.|
T Consensus 2 k~~~C~~C~k~f~~~~~l 19 (27)
T 2kvg_A 2 APYRCPLCRAGCPSLASM 19 (27)
T ss_dssp CTEEETTTTEEESCHHHH
T ss_pred cCcCCCCCCcccCCHHHH
Confidence 468999998766654443
No 46
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.94 E-value=24 Score=21.68 Aligned_cols=11 Identities=27% Similarity=0.975 Sum_probs=8.1
Q ss_pred EEeccCCCCCC
Q 033031 14 YSCKHCRTHLA 24 (129)
Q Consensus 14 y~C~~C~thLa 24 (129)
|.|..|+.+|.
T Consensus 36 F~C~~C~~~L~ 46 (76)
T 1x68_A 36 FNCGKCSVSLV 46 (76)
T ss_dssp CBCTTTCCBCS
T ss_pred CChhhCCCcCC
Confidence 67777777775
No 47
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.38 E-value=8.2 Score=17.96 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=12.2
Q ss_pred eEEeccCCCCCCCCCCc
Q 033031 13 IYSCKHCRTHLALCEDV 29 (129)
Q Consensus 13 ~y~C~~C~thLa~~~~l 29 (129)
+|.|..|..-+...+.|
T Consensus 2 ~~~C~~C~~~f~~~~~l 18 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHL 18 (29)
T ss_dssp CCBCTTTCCBCSSHHHH
T ss_pred CeECCCCCcccCCHHHH
Confidence 57888898777665544
No 48
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.07 E-value=35 Score=21.04 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=9.8
Q ss_pred EEeccCCCCCCCC
Q 033031 14 YSCKHCRTHLALC 26 (129)
Q Consensus 14 y~C~~C~thLa~~ 26 (129)
|.|..|+.+|...
T Consensus 35 F~C~~C~~~L~~~ 47 (81)
T 1a7i_A 35 FLCMVCRKNLDST 47 (81)
T ss_dssp EECSSSCCEECSS
T ss_pred CccCCCCCCCCCC
Confidence 7888888887654
No 49
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.97 E-value=23 Score=21.15 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=7.8
Q ss_pred EEeccCCCCCC
Q 033031 14 YSCKHCRTHLA 24 (129)
Q Consensus 14 y~C~~C~thLa 24 (129)
|.|..|+.+|.
T Consensus 32 F~C~~C~~~L~ 42 (69)
T 2cur_A 32 FVCVTCSKKLA 42 (69)
T ss_dssp TBCTTTCCBCT
T ss_pred CEECCCCCCCC
Confidence 66777777765
No 50
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.64 E-value=10 Score=19.08 Aligned_cols=18 Identities=17% Similarity=0.628 Sum_probs=14.1
Q ss_pred ceEEeccCCCCCCCCCCc
Q 033031 12 KIYSCKHCRTHLALCEDV 29 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (129)
++|.|..|..-+...+.|
T Consensus 10 k~~~C~~C~k~f~~~~~l 27 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDHL 27 (37)
T ss_dssp SSBCCTTTCCCBSSHHHH
T ss_pred CCccCCCCCcccCcHHHH
Confidence 789999998877765554
No 51
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.58 E-value=17 Score=18.21 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=14.7
Q ss_pred CceEEeccCCCCCCCC-CCc
Q 033031 11 GKIYSCKHCRTHLALC-EDV 29 (129)
Q Consensus 11 g~~y~C~~C~thLa~~-~~l 29 (129)
.++|.|..|..-+... +.|
T Consensus 7 ~k~~~C~~C~k~f~~~~~~L 26 (37)
T 2elp_A 7 GRAMKCPYCDFYFMKNGSDL 26 (37)
T ss_dssp CCCEECSSSSCEECSSCHHH
T ss_pred CCCeECCCCChhhccCHHHH
Confidence 3789999999877766 554
No 52
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.50 E-value=17 Score=18.99 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=16.0
Q ss_pred CceEEeccCCCCCCCCCCcc
Q 033031 11 GKIYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 11 g~~y~C~~C~thLa~~~~lI 30 (129)
.+.|.|..|..-+...+.|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~ 29 (44)
T 2yu5_A 10 ENPFKCSKCDRVFTQRNYLV 29 (44)
T ss_dssp CCSEECSSSSCEESSSHHHH
T ss_pred CCCeECCCCCchhCCHHHHH
Confidence 37899999998887776664
No 53
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.03 E-value=12 Score=18.62 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=13.9
Q ss_pred ceEEeccCCCCCCCCCCc
Q 033031 12 KIYSCKHCRTHLALCEDV 29 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (129)
++|.|..|..-+...+.|
T Consensus 8 k~~~C~~C~k~f~~~~~l 25 (36)
T 2elv_A 8 LLYDCHICERKFKNELDR 25 (36)
T ss_dssp CCEECSSSCCEESSHHHH
T ss_pred CCeECCCCCCccCCHHHH
Confidence 789999998776665544
No 54
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=21.57 E-value=66 Score=22.89 Aligned_cols=30 Identities=20% Similarity=0.151 Sum_probs=25.9
Q ss_pred cCCCCeeeeeeeeeecccCcccceeeeecc
Q 033031 35 HCRHGKAYLFSKVVNVSVGEKEERLMMTGM 64 (129)
Q Consensus 35 ~G~~G~AyLf~~v~Nv~~g~~~~r~m~TG~ 64 (129)
.|++|.|+.--++.|+..|...++.+.+|-
T Consensus 35 pGKhG~A~vr~k~knl~tG~~~e~tf~s~~ 64 (138)
T 1iz6_A 35 PGKHGSAKARIEAVGIFDGKVRSIVKPTSA 64 (138)
T ss_dssp CCTTSCCEEEEEEEETTTCCEEEEEEETTS
T ss_pred CCCCCceEEEEEEEECCCCCEEEEEecCCC
Confidence 489999998889999999999887777764
No 55
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.37 E-value=25 Score=21.72 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=9.8
Q ss_pred EeccCCCCCCCCCCccc
Q 033031 15 SCKHCRTHLALCEDVVS 31 (129)
Q Consensus 15 ~C~~C~thLa~~~~lIS 31 (129)
.|..|+.++...+.+|+
T Consensus 17 ~C~~C~~~I~~~~~~~~ 33 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELF 33 (82)
T ss_dssp BCTTTCCBCCSSCCBCC
T ss_pred cCccCCCccccCcEEEE
Confidence 46667766664444443
No 56
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.07 E-value=33 Score=20.51 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=8.2
Q ss_pred EEeccCCCCCCC
Q 033031 14 YSCKHCRTHLAL 25 (129)
Q Consensus 14 y~C~~C~thLa~ 25 (129)
|.|..|+.+|..
T Consensus 34 F~C~~C~~~L~~ 45 (72)
T 1wyh_A 34 FLCSGCEQPLGS 45 (72)
T ss_dssp CBCTTTCCBTTT
T ss_pred CeECCCCCcCCC
Confidence 677777777654
No 57
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.44 E-value=11 Score=18.91 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=14.9
Q ss_pred CceEEeccCCCCCCCCCCcc
Q 033031 11 GKIYSCKHCRTHLALCEDVV 30 (129)
Q Consensus 11 g~~y~C~~C~thLa~~~~lI 30 (129)
.+.|.|..|..-+...+.|.
T Consensus 7 ~k~~~C~~C~k~f~~~~~l~ 26 (37)
T 2elo_A 7 GRSYSCPVCEKSFSEDRLIK 26 (37)
T ss_dssp CCCCEETTTTEECSSHHHHH
T ss_pred CCCcCCCCCCCccCCHHHHH
Confidence 37899999988777665553
No 58
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.33 E-value=14 Score=18.41 Aligned_cols=18 Identities=22% Similarity=0.698 Sum_probs=14.1
Q ss_pred ceEEeccCCCCCCCCCCc
Q 033031 12 KIYSCKHCRTHLALCEDV 29 (129)
Q Consensus 12 ~~y~C~~C~thLa~~~~l 29 (129)
++|.|..|..-+.....|
T Consensus 8 k~~~C~~C~k~f~~~~~l 25 (36)
T 2els_A 8 KIFTCEYCNKVFKFKHSL 25 (36)
T ss_dssp CCEECTTTCCEESSHHHH
T ss_pred CCEECCCCCceeCCHHHH
Confidence 789999999877665554
Done!