BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033033
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HEB|A Chain A, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
pdb|4HEB|B Chain B, The Crystal Structure Of Maf Protein Of Bacillus Subtilis
Length = 210
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSA 99
+IL S S RKE+L + ++++ +E++EK R PE+ V LA+ KA+A+
Sbjct: 26 LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKAV------- 78
Query: 100 GQLNPTTLLITADT-VCFNSSPL 121
L+P ++I ADT VC + L
Sbjct: 79 ADLHPHAIVIGADTMVCLDGECL 101
>pdb|1EX2|A Chain A, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EX2|B Chain B, Crystal Structure Of Bacillus Subtilis Maf Protein
pdb|1EXC|A Chain A, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
pdb|1EXC|B Chain B, Crystal Structure Of B. Subtilis Maf Protein Complexed
With D-(Utp)
Length = 189
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSA 99
+IL S S RKE+L + ++++ +E++EK R PE+ V LA+ KA+A+
Sbjct: 5 LILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKAV------- 57
Query: 100 GQLNPTTLLITADT-VCFNSSPL 121
L+P ++I ADT VC + L
Sbjct: 58 ADLHPHAIVIGADTMVCLDGECL 80
>pdb|2AMH|A Chain A, Crystal Structure Of Maf-Like Protein Tbru21784aaa From
T.Brucei
Length = 207
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 40 IILGSSSMARKEILAEMGYE----FTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSR 95
+I+G+SS R +L E + F ++ +IDEK+ R P +L ++A AK +A+
Sbjct: 12 MIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKMKAV--- 68
Query: 96 LQSAGQLNP 104
L+ A Q +P
Sbjct: 69 LEKARQHSP 77
>pdb|2VUN|A Chain A, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|B Chain B, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|C Chain C, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
pdb|2VUN|D Chain D, The Crystal Structure Of Enamidase At 1.9 A Resolution - A
New Member Of The Amidohydrolase Superfamily
Length = 386
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 50 KEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLI 109
+E EM E + E+ +I+ PED + A + ++ + G P + +
Sbjct: 148 EEDFIEMKKEGVWIVGEVGLGTIKN--PEDAAPMVEWAHKHGFKVQMHTGGTSIPGSSTV 205
Query: 110 TADTVCFNSSPLFAHYN 126
TAD V + +H N
Sbjct: 206 TADDVIKTKPDVVSHIN 222
>pdb|2YBQ|A Chain A, The X-Ray Structure Of The Sam-Dependent Uroporphyrinogen
Iii Methyltransferase Nire From Pseudomonas Aeruginosa
In Complex With Sah And Uroporphyrinogen Iii
Length = 292
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 23/134 (17%)
Query: 2 NTAYAATFRTAHLQTTLESGTEFERKRGMARSESSPIKIILGSSSMARKEILAEMGYEFT 61
+ A + TF T HLQ ++ G+AR + + + +G ++A
Sbjct: 155 DLAQSCTFVTGHLQNDGRLDLDWA---GLARGKQT-LVFYMGLGNLAE------------ 198
Query: 62 VVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAG------QLNPTTLLITADTVC 115
+ A + E + D P LV +A + R L QL P TL++ V
Sbjct: 199 -IAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVA 257
Query: 116 FNSSPLFAHYNLLN 129
+ AH + L
Sbjct: 258 LFAERAMAHPSYLG 271
>pdb|4EO0|A Chain A, Crystal Structure Of The Pilus Binding Domain Of The
Filamentous Phage Ike
Length = 115
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 61 TVVTAEIDEKSIRKD--KPEDLVMALAEAKAEAIRSRLQ-----SAGQLNPTTLLITADT 113
TV + + D K +RK+ DL A +AKA A Q S N L+T DT
Sbjct: 20 TVESKDKDGKPVRKEVITQADLTTACNDAKASAQNVFNQIKLTLSGTWPNSQFRLVTGDT 79
Query: 114 VCFNSSP 120
+N SP
Sbjct: 80 CVYNGSP 86
>pdb|2YBO|A Chain A, The X-Ray Structure Of The Sam-Dependent Uroporphyrinogen
Iii Methyltransferase Nire From Pseudomonas Aeruginosa
In Complex With Sah
Length = 294
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 23/134 (17%)
Query: 2 NTAYAATFRTAHLQTTLESGTEFERKRGMARSESSPIKIILGSSSMARKEILAEMGYEFT 61
+ A + TF T HLQ ++ G+AR + + + +G ++A
Sbjct: 157 DLAQSCTFVTGHLQNDGRLDLDWA---GLARGKQT-LVFYMGLGNLAE------------ 200
Query: 62 VVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAG------QLNPTTLLITADTVC 115
+ A + E + D P LV +A + R L QL P TL++ V
Sbjct: 201 -IAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVA 259
Query: 116 FNSSPLFAHYNLLN 129
+ AH + L
Sbjct: 260 LFAERAMAHPSYLG 273
>pdb|3QMW|A Chain A, Redj With Peg Molecule Bound In The Active Site
pdb|3QMW|B Chain B, Redj With Peg Molecule Bound In The Active Site
pdb|3QMW|C Chain C, Redj With Peg Molecule Bound In The Active Site
pdb|3QMW|D Chain D, Redj With Peg Molecule Bound In The Active Site
Length = 259
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 43 GSSSMARKEILAEMGYEFTVVTAEIDEKSIR-KDKPEDLVMALAEAKAEAI 92
G + A + +G E VV ++ + +R +++P D + LAEA A+A+
Sbjct: 40 GGTVSAFRGWQERLGDEVAVVPVQLPGRGLRLRERPYDTMEPLAEAVADAL 90
>pdb|3F46|A Chain A, The Crystal Structure Of C176a Mutated [fe]-Hydrogenase
(Hmd) Holoenzyme From Methanocaldococcus Jannaschii
pdb|3H65|A Chain A, The Crystal Structure Of C176a Mutated [fe]-Hydrogenase
(Hmd) Holoenzyme In Complex With
Methylenetetrahydromethanopterin
Length = 358
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 77 PEDLVMALAEAKAEAIRSRLQSAG------QLNPTTLLITADTVCFN 117
P D +A+ I + ++ G L+P LL TAD++CF
Sbjct: 278 PADFAQMMADEALTQIHNLMKEKGIANMEEALDPAALLGTADSMCFG 324
>pdb|2B0J|A Chain A, The Crystal Structure Of The Apoenzyme Of The
Iron-Sulfur-Cluster-Free Hydrogenase (Hmd)
pdb|3F47|A Chain A, The Crystal Structure Of [fe]-Hydrogenase (Hmd) Holoenzyme
From Methanocaldococcus Jannaschii
Length = 358
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 77 PEDLVMALAEAKAEAIRSRLQSAG------QLNPTTLLITADTVCFN 117
P D +A+ I + ++ G L+P LL TAD++CF
Sbjct: 278 PADFAQMMADEALTQIHNLMKEKGIANMEEALDPAALLGTADSMCFG 324
>pdb|3DAF|A Chain A, The Crystal Structure Of [fe]-Hydrogenase Holoenzyme (Hmd)
From Methanocaldococcus Jannaschii Cocrystallized With
Cyanide
pdb|3DAG|A Chain A, The Crystal Structure Of [fe]-Hydrogenase Holoenzyme (Hmd)
From Methanocaldococcus Jannaschii
Length = 358
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 77 PEDLVMALAEAKAEAIRSRLQSAG------QLNPTTLLITADTVCFN 117
P D +A+ I + ++ G L+P LL TAD++CF
Sbjct: 278 PADFAQMMADEALTQIHNLMKEKGIANMEEALDPAALLGTADSMCFG 324
>pdb|2VOZ|A Chain A, Apo Futa2 From Synechocystis Pcc6803
pdb|2VOZ|B Chain B, Apo Futa2 From Synechocystis Pcc6803
pdb|2VP1|A Chain A, Fe-Futa2 From Synechocystis Pcc6803
pdb|2VP1|B Chain B, Fe-Futa2 From Synechocystis Pcc6803
Length = 346
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 84 LAEAKAEAIRSRLQSAGQLNPTTLLITAD 112
L EA AE + R+QS G +P +L T D
Sbjct: 59 LIEASAEELIERIQSEGANSPGDILFTVD 87
>pdb|1IQ6|A Chain A, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
pdb|1IQ6|B Chain B, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis
Length = 134
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 9 FRTAHLQTTLESGTEFERKRGMARSESSPIKIILGSSSMARKEILAEMGYEFTV------ 62
F HL + T FER +S +LG + I F +
Sbjct: 33 FNPLHLDPAFAATTAFERPIVHGMLLASLFSGLLGQQLPGKGSIYLGQSLSFKLPVFVGD 92
Query: 63 -VTAEIDEKSIRKDKP 77
VTAE++ ++R+DKP
Sbjct: 93 EVTAEVEVTALREDKP 108
>pdb|2PT1|A Chain A, Futa1 Synechocystis Pcc 6803
pdb|2PT2|A Chain A, Structure Of Futa1 With Iron(Ii)
pdb|3F11|A Chain A, Structure Of Futa1 With Iron(Iii)
Length = 334
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 84 LAEAKAEAIRSRLQSAGQLNPTTLLITAD 112
L E KA+ + R++S G +P +L+T D
Sbjct: 49 LIEGKADELLERIKSEGANSPADVLLTVD 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.126 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,068,514
Number of Sequences: 62578
Number of extensions: 91242
Number of successful extensions: 338
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 17
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)