Query 033033
Match_columns 129
No_of_seqs 152 out of 1057
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:59:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14368 Maf-like protein; Pro 100.0 6.7E-30 1.4E-34 198.3 11.8 86 35-127 2-87 (193)
2 TIGR00172 maf MAF protein. Thi 100.0 1.1E-29 2.3E-34 195.6 11.4 83 38-127 3-85 (183)
3 PRK02141 Maf-like protein; Rev 100.0 2.1E-29 4.6E-34 197.3 12.7 87 37-127 8-94 (207)
4 COG0424 Maf Nucleotide-binding 100.0 1.5E-29 3.3E-34 196.5 11.3 84 38-127 3-86 (193)
5 PRK04056 Maf-like protein; Rev 100.0 2E-29 4.4E-34 193.7 11.1 83 39-127 1-83 (180)
6 PRK00078 Maf-like protein; Rev 100.0 3.5E-29 7.7E-34 193.9 11.3 85 38-127 1-86 (192)
7 PRK00148 Maf-like protein; Rev 100.0 3.5E-29 7.5E-34 194.3 11.2 83 38-127 1-83 (194)
8 PRK00234 Maf-like protein; Rev 100.0 3.3E-29 7.1E-34 194.1 10.8 82 39-127 3-84 (192)
9 PRK00032 Maf-like protein; Rev 100.0 4.1E-29 8.9E-34 193.4 11.2 83 39-127 3-85 (190)
10 PRK14367 Maf-like protein; Pro 100.0 6E-29 1.3E-33 194.0 12.0 89 39-127 3-91 (202)
11 PRK00884 Maf-like protein; Rev 100.0 4.8E-29 1E-33 193.6 11.0 82 39-127 3-84 (194)
12 PRK04694 Maf-like protein; Rev 100.0 6.2E-29 1.3E-33 192.3 11.6 86 39-127 1-86 (190)
13 PRK04425 Maf-like protein; Rev 100.0 6.3E-29 1.4E-33 193.2 11.4 84 37-127 4-87 (196)
14 PRK14366 Maf-like protein; Pro 100.0 1.2E-28 2.5E-33 191.6 11.6 83 38-127 5-88 (195)
15 PRK01839 Maf-like protein; Rev 100.0 1.9E-28 4E-33 192.1 12.5 95 29-127 3-103 (209)
16 PRK00648 Maf-like protein; Rev 100.0 1.5E-28 3.1E-33 190.3 11.7 84 38-127 3-87 (191)
17 PRK02478 Maf-like protein; Rev 100.0 1.1E-28 2.5E-33 192.0 11.1 83 38-127 3-91 (199)
18 PRK14363 Maf-like protein; Pro 100.0 1.5E-28 3.3E-33 192.2 11.2 83 38-127 1-83 (204)
19 PRK01526 Maf-like protein; Rev 100.0 1.9E-28 4.1E-33 191.7 11.7 86 36-127 6-92 (205)
20 cd00555 Maf Nucleotide binding 100.0 1.3E-28 2.7E-33 188.9 10.5 82 40-127 1-82 (180)
21 PRK14362 Maf-like protein; Pro 100.0 2.7E-28 5.8E-33 191.1 11.8 84 37-127 11-95 (207)
22 PRK01441 Maf-like protein; Rev 100.0 2.5E-28 5.5E-33 191.1 11.5 90 37-127 4-94 (207)
23 PRK14365 Maf-like protein; Pro 100.0 2.5E-28 5.5E-33 189.9 10.8 82 39-127 3-85 (197)
24 PRK14361 Maf-like protein; Pro 100.0 3.2E-28 7E-33 188.0 10.3 80 40-127 1-80 (187)
25 PF02545 Maf: Maf-like protein 100.0 1.9E-28 4.2E-33 190.1 8.7 84 38-127 1-86 (195)
26 PRK14364 Maf-like protein; Pro 99.9 8.1E-28 1.8E-32 184.9 10.2 79 42-127 1-79 (181)
27 cd00985 Maf_Ham1 Maf_Ham1. Maf 99.9 1.4E-21 3E-26 140.9 10.0 80 40-127 1-81 (131)
28 KOG1509 Predicted nucleic acid 99.9 1.8E-21 3.8E-26 151.6 9.6 91 36-127 8-100 (209)
29 PRK14824 putative deoxyribonuc 91.4 2 4.3E-05 33.7 8.6 72 39-126 2-79 (201)
30 PRK14821 putative deoxyribonuc 90.5 1.6 3.6E-05 33.6 7.4 73 39-126 2-78 (184)
31 PRK00120 dITP/XTP pyrophosphat 89.5 3.6 7.7E-05 32.0 8.6 75 39-126 2-81 (196)
32 PRK14823 putative deoxyribonuc 89.3 2.9 6.2E-05 32.5 7.9 72 39-126 2-81 (191)
33 TIGR00042 non-canonical purine 87.0 6.3 0.00014 30.3 8.5 75 39-126 1-78 (184)
34 cd00515 HAM1 NTPase/HAM1. Thi 87.0 5.1 0.00011 30.7 7.9 65 40-119 1-71 (183)
35 PRK14822 nucleoside-triphospha 86.2 8.1 0.00017 30.2 8.8 75 39-126 3-83 (200)
36 PRK14826 putative deoxyribonuc 84.7 8.9 0.00019 30.5 8.5 80 36-126 7-97 (222)
37 PF01725 Ham1p_like: Ham1 fami 83.1 2.6 5.7E-05 32.4 4.7 65 40-119 1-75 (189)
38 PRK02491 putative deoxyribonuc 81.9 8.5 0.00018 32.6 7.6 76 38-126 128-209 (328)
39 PRK14825 putative deoxyribonuc 71.6 26 0.00057 27.3 7.4 68 39-119 3-75 (199)
40 COG0181 HemC Porphobilinogen d 68.4 3.9 8.5E-05 34.3 2.2 50 39-88 120-173 (307)
41 PF01379 Porphobil_deam: Porph 65.9 5.7 0.00012 31.6 2.6 32 39-70 120-153 (215)
42 cd00494 HMBS Hydroxymethylbila 64.8 6.9 0.00015 32.5 3.0 32 40-71 118-151 (292)
43 COG0041 PurE Phosphoribosylcar 62.8 10 0.00022 29.1 3.4 40 38-83 5-49 (162)
44 PRK00072 hemC porphobilinogen 62.1 8.4 0.00018 32.1 3.0 32 40-71 122-155 (295)
45 COG0127 Xanthosine triphosphat 59.7 84 0.0018 24.7 8.5 72 38-119 2-77 (194)
46 TIGR00083 ribF riboflavin kina 57.8 11 0.00024 31.0 3.0 39 45-85 55-93 (288)
47 TIGR00212 hemC porphobilinogen 57.6 11 0.00023 31.4 2.9 32 39-70 117-150 (292)
48 cd04911 ACT_AKiii-YclM-BS_1 AC 56.2 11 0.00024 25.3 2.3 20 51-70 23-42 (76)
49 PRK01066 porphobilinogen deami 56.1 12 0.00025 30.3 2.8 33 39-71 132-166 (231)
50 PLN02691 porphobilinogen deami 53.5 14 0.0003 31.7 3.0 33 39-71 164-198 (351)
51 TIGR00511 ribulose_e2b2 ribose 52.6 43 0.00093 27.6 5.7 77 42-128 122-207 (301)
52 PF00107 ADH_zinc_N: Zinc-bind 51.6 31 0.00067 23.4 4.1 31 38-68 15-45 (130)
53 PRK08535 translation initiatio 49.9 45 0.00098 27.5 5.4 77 42-128 127-212 (310)
54 cd02064 FAD_synthetase_N FAD s 48.0 31 0.00068 25.8 3.9 38 45-84 57-94 (180)
55 COG2428 Uncharacterized conser 46.5 32 0.00069 27.0 3.7 14 110-124 83-96 (196)
56 PRK08335 translation initiatio 45.8 57 0.0012 26.8 5.4 24 104-128 178-201 (275)
57 PF06574 FAD_syn: FAD syntheta 44.2 25 0.00055 26.1 2.9 39 43-83 61-99 (157)
58 PRK08238 hypothetical protein; 41.1 62 0.0013 28.5 5.2 33 36-69 87-122 (479)
59 PF02254 TrkA_N: TrkA-N domain 41.1 63 0.0014 21.6 4.3 29 36-64 88-116 (116)
60 TIGR00524 eIF-2B_rel eIF-2B al 38.6 72 0.0016 26.4 5.0 66 55-127 148-220 (303)
61 PF08373 RAP: RAP domain; Int 37.4 28 0.00061 21.0 1.9 21 44-64 18-38 (58)
62 KOG3332 N-acetylglucosaminyl p 37.2 1.3E+02 0.0029 24.6 6.1 39 45-83 82-127 (247)
63 PRK05772 translation initiatio 37.1 78 0.0017 27.1 5.1 24 104-128 247-270 (363)
64 TIGR01664 DNA-3'-Pase DNA 3'-p 36.0 1.3E+02 0.0029 22.1 5.7 39 28-66 45-102 (166)
65 cd03054 GST_N_Metaxin GST_N fa 34.6 62 0.0013 19.9 3.2 30 40-69 10-42 (72)
66 PRK06371 translation initiatio 33.5 1.3E+02 0.0027 25.5 5.7 24 104-128 216-239 (329)
67 COG4073 Uncharacterized protei 31.2 32 0.00068 27.0 1.6 32 39-70 119-152 (198)
68 PRK06372 translation initiatio 29.9 2.2E+02 0.0047 23.2 6.4 77 41-128 92-175 (253)
69 PF07131 DUF1382: Protein of u 29.7 26 0.00057 22.7 0.8 21 51-71 17-37 (61)
70 PF06690 DUF1188: Protein of u 28.4 95 0.0021 25.5 4.0 35 75-111 16-50 (252)
71 PRK11590 hypothetical protein; 28.3 53 0.0012 24.9 2.5 33 37-69 112-148 (211)
72 PF01008 IF-2B: Initiation fac 27.9 25 0.00054 28.0 0.6 80 40-128 112-200 (282)
73 cd03055 GST_N_Omega GST_N fami 27.8 1.4E+02 0.0031 19.3 4.2 40 23-69 11-53 (89)
74 PF04405 ScdA_N: Domain of Unk 27.6 28 0.00062 21.8 0.7 42 43-84 9-52 (56)
75 cd03027 GRX_DEP Glutaredoxin ( 27.4 67 0.0015 19.9 2.5 22 47-70 15-36 (73)
76 TIGR02432 lysidine_TilS_N tRNA 27.2 2.5E+02 0.0054 20.5 6.5 49 47-95 48-97 (189)
77 cd03028 GRX_PICOT_like Glutare 27.2 1.5E+02 0.0032 19.5 4.2 29 37-65 7-45 (90)
78 PRK07143 hypothetical protein; 26.6 90 0.0019 25.6 3.6 38 45-84 66-103 (279)
79 COG1158 Rho Transcription term 25.8 81 0.0018 27.5 3.3 45 58-114 225-269 (422)
80 PF09419 PGP_phosphatase: Mito 25.4 1.6E+02 0.0035 22.4 4.6 26 39-64 79-113 (168)
81 PRK05627 bifunctional riboflav 25.3 1E+02 0.0022 25.5 3.7 36 46-83 72-107 (305)
82 PRK10824 glutaredoxin-4; Provi 25.0 1.2E+02 0.0026 21.6 3.6 31 37-69 14-54 (115)
83 TIGR02190 GlrX-dom Glutaredoxi 23.3 77 0.0017 20.2 2.2 29 37-65 7-40 (79)
84 PRK05379 bifunctional nicotina 22.7 56 0.0012 27.2 1.8 17 106-122 201-217 (340)
85 PF08557 Lipid_DES: Sphingolip 22.6 51 0.0011 19.5 1.1 11 46-56 16-26 (39)
86 cd03051 GST_N_GTT2_like GST_N 22.3 1.1E+02 0.0023 18.3 2.7 24 46-69 11-35 (74)
87 TIGR00365 monothiol glutaredox 22.2 1.5E+02 0.0032 20.0 3.5 28 37-64 11-48 (97)
88 cd03080 GST_N_Metaxin_like GST 22.2 1.2E+02 0.0025 18.9 2.8 25 43-67 14-41 (75)
89 PF01171 ATP_bind_3: PP-loop f 21.9 2.6E+02 0.0056 20.5 5.1 32 50-83 51-82 (182)
90 PRK09424 pntA NAD(P) transhydr 21.8 4E+02 0.0087 23.8 7.0 27 39-65 190-216 (509)
91 PRK09880 L-idonate 5-dehydroge 21.3 1.4E+02 0.0031 23.9 3.9 26 39-64 196-221 (343)
92 PRK08334 translation initiatio 20.3 52 0.0011 28.2 1.1 24 104-128 239-262 (356)
93 PF00462 Glutaredoxin: Glutare 20.2 59 0.0013 19.4 1.1 22 48-69 14-35 (60)
94 PRK10329 glutaredoxin-like pro 20.1 1.1E+02 0.0024 19.9 2.5 19 48-66 16-34 (81)
95 PF01939 DUF91: Protein of unk 20.0 1E+02 0.0022 24.8 2.7 31 40-70 187-217 (228)
No 1
>PRK14368 Maf-like protein; Provisional
Probab=99.97 E-value=6.7e-30 Score=198.28 Aligned_cols=86 Identities=33% Similarity=0.438 Sum_probs=79.9
Q ss_pred CCCCeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccce
Q 033033 35 SSPIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTV 114 (129)
Q Consensus 35 ~~~~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTV 114 (129)
|..++|||||+||||++||+++|++|+++|+++||+..++.+|.+||.++|+.||++|+++++ +.+|||||||
T Consensus 2 ~~~~~lILAS~SprR~eLL~~~g~~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~vI~aDTv 74 (193)
T PRK14368 2 MANSPIVLASASPRRSELLASAGIEFDVVPADIPEEPLPGEEPVDHVLRLAREKARAAAALAE-------GRFFIGADTI 74 (193)
T ss_pred CCCCcEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCcE
Confidence 346789999999999999999999999999999999988899999999999999999988643 5899999999
Q ss_pred EEeCCeeeccCCC
Q 033033 115 CFNSSPLFAHYNL 127 (129)
Q Consensus 115 V~~dg~IlgKP~~ 127 (129)
|++||+|||||..
T Consensus 75 V~~~g~ilgKP~~ 87 (193)
T PRK14368 75 VVCDGEIMGKPKD 87 (193)
T ss_pred EEECCEEecCCCC
Confidence 9999999999975
No 2
>TIGR00172 maf MAF protein. This nonessential gene causes inhibition of septation when overexpressed. A member of the family is found in the Archaeon Pyrococcus horikoshii and another in the round worm Caenorhabditis elegans.
Probab=99.96 E-value=1.1e-29 Score=195.62 Aligned_cols=83 Identities=37% Similarity=0.562 Sum_probs=78.3
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEe
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFN 117 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~ 117 (129)
++|||||+||||++||+++|++|+++|++|||+..++.+|.+||.++|..||++|+++++ +.+||||||||++
T Consensus 3 ~~lILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~~~~lA~~Ka~~v~~~~~-------~~~vI~aDTvV~~ 75 (183)
T TIGR00172 3 KELILASQSPRRKELLEELGISFEQIVSEFDEKSLKTTSPRELVYRLAKEKAQAVAELLA-------DALIIGADTVVIL 75 (183)
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEEEE
Confidence 579999999999999999999999999999999988899999999999999999988764 4799999999999
Q ss_pred CCeeeccCCC
Q 033033 118 SSPLFAHYNL 127 (129)
Q Consensus 118 dg~IlgKP~~ 127 (129)
||+|||||..
T Consensus 76 ~g~ilgKP~~ 85 (183)
T TIGR00172 76 DGEIYGKPKD 85 (183)
T ss_pred CCEEecCCCC
Confidence 9999999975
No 3
>PRK02141 Maf-like protein; Reviewed
Probab=99.96 E-value=2.1e-29 Score=197.34 Aligned_cols=87 Identities=31% Similarity=0.477 Sum_probs=80.0
Q ss_pred CCeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEE
Q 033033 37 PIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCF 116 (129)
Q Consensus 37 ~~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~ 116 (129)
+++|||||+||||++||+++|++|++++++|||+..+..+|.+|+.++|+.||++|++++.. .++.+||||||||+
T Consensus 8 ~~~iILAS~SprR~elL~~~G~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~l~~----~~~~iVI~aDTvV~ 83 (207)
T PRK02141 8 PPRLILASSSRYRRELLERLRLPFDVVSPDIDETPLAGETPAATALRLAAAKARAVAATIDA----PPGALVIGSDQVAT 83 (207)
T ss_pred CCCEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcc----CCCCEEEEeCeEEE
Confidence 37899999999999999999999999999999999888899999999999999999986632 14589999999999
Q ss_pred eCCeeeccCCC
Q 033033 117 NSSPLFAHYNL 127 (129)
Q Consensus 117 ~dg~IlgKP~~ 127 (129)
+||+|||||..
T Consensus 84 ~~g~ilgKP~~ 94 (207)
T PRK02141 84 FDGLQIGKPGT 94 (207)
T ss_pred ECCEEecCCCC
Confidence 99999999975
No 4
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=99.96 E-value=1.5e-29 Score=196.47 Aligned_cols=84 Identities=37% Similarity=0.604 Sum_probs=79.6
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEe
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFN 117 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~ 117 (129)
++|||||+||||++||+++||+|++++++|||+..+...|.+||++||+.||++++.+++ ++.+||||||||++
T Consensus 3 ~~LiLAS~SPrR~elL~~~gi~f~~~~~~iDE~~~~~~~P~~~v~~LA~~KA~~va~~~~------~~~~VigaDtvv~l 76 (193)
T COG0424 3 PRLILASSSPRRRELLEQLGIPFEVIPSDIDEPLLKAEEPREYVLRLAEEKARAVAARLP------PDALVIGADTVVVL 76 (193)
T ss_pred ccEEEecCCHHHHHHHHHCCCCeEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCC------CCCEEEecCeEEEE
Confidence 589999999999999999999999999999999988888999999999999999999885 25899999999999
Q ss_pred CCeeeccCCC
Q 033033 118 SSPLFAHYNL 127 (129)
Q Consensus 118 dg~IlgKP~~ 127 (129)
||+|||||..
T Consensus 77 dgrilgKP~~ 86 (193)
T COG0424 77 DGRILGKPKD 86 (193)
T ss_pred CCEEecCCCC
Confidence 9999999975
No 5
>PRK04056 Maf-like protein; Reviewed
Probab=99.96 E-value=2e-29 Score=193.69 Aligned_cols=83 Identities=30% Similarity=0.419 Sum_probs=77.5
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEeC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFNS 118 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~d 118 (129)
.|||||+||||++||+++|++|+++|++|||+..++.+|.+||.++|..||++++++++. +.+||||||||++|
T Consensus 1 ~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~------~~~vI~aDTvV~~~ 74 (180)
T PRK04056 1 MIILASSSSTRANLLKEAGIEFEQKSLDFDEESIKKTSPKEFVYLAVKGKLEQFLKKYGN------ECNLLVADSVVSCG 74 (180)
T ss_pred CEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCC------CCEEEEeCEEEEEC
Confidence 389999999999999999999999999999999888899999999999999999987642 36999999999999
Q ss_pred CeeeccCCC
Q 033033 119 SPLFAHYNL 127 (129)
Q Consensus 119 g~IlgKP~~ 127 (129)
|+|||||..
T Consensus 75 g~ilgKP~~ 83 (180)
T PRK04056 75 NKILRKAKD 83 (180)
T ss_pred CEEecCCCC
Confidence 999999975
No 6
>PRK00078 Maf-like protein; Reviewed
Probab=99.96 E-value=3.5e-29 Score=193.87 Aligned_cols=85 Identities=32% Similarity=0.483 Sum_probs=77.3
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEE
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIR-KDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCF 116 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~-~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~ 116 (129)
++|||||+||||++||+++|++|+++|++|||+... ..+|.+++.++|+.||++|++++.. ++.+||||||||+
T Consensus 1 ~~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~~p~~~~~~lA~~KA~~v~~~~~~-----~~~lvI~aDTvV~ 75 (192)
T PRK00078 1 MKIILASASERRQELLKRILEDFQVIVSDFDESSVPFKGNIESYVMNLAEGKARSVSKKLDQ-----ESSIVIGCDTIVA 75 (192)
T ss_pred CcEEEeCCCHHHHHHHHhCCCCeEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC-----CCCEEEEeCeEEE
Confidence 479999999999999999999999999999999865 4689999999999999999887632 3479999999999
Q ss_pred eCCeeeccCCC
Q 033033 117 NSSPLFAHYNL 127 (129)
Q Consensus 117 ~dg~IlgKP~~ 127 (129)
+||+|||||..
T Consensus 76 ~~g~ilgKP~~ 86 (192)
T PRK00078 76 FNGKVLGKPKD 86 (192)
T ss_pred ECCEEeCCCCC
Confidence 99999999974
No 7
>PRK00148 Maf-like protein; Reviewed
Probab=99.96 E-value=3.5e-29 Score=194.26 Aligned_cols=83 Identities=30% Similarity=0.432 Sum_probs=77.9
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEe
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFN 117 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~ 117 (129)
++|||||+||||++||+++|++|++++++|||+..+..+|.+||.++|..||++++++++ +.+||||||||++
T Consensus 1 ~~iILAS~SprR~elL~~~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~vI~aDTvV~~ 73 (194)
T PRK00148 1 TRLVLASASPARLKLLRLAGIPPLVVVSHVDEDAIAASSPSELVQALARAKAEAVAENAP-------DAVVLGCDSMLLI 73 (194)
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCcEEEE
Confidence 369999999999999999999999999999999988889999999999999999987653 4799999999999
Q ss_pred CCeeeccCCC
Q 033033 118 SSPLFAHYNL 127 (129)
Q Consensus 118 dg~IlgKP~~ 127 (129)
||+|||||..
T Consensus 74 ~g~Il~KP~~ 83 (194)
T PRK00148 74 DGRLLGKPHT 83 (194)
T ss_pred CCEEecCCCC
Confidence 9999999975
No 8
>PRK00234 Maf-like protein; Reviewed
Probab=99.96 E-value=3.3e-29 Score=194.06 Aligned_cols=82 Identities=32% Similarity=0.435 Sum_probs=77.5
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEeC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFNS 118 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~d 118 (129)
+|||||+||||++||+++|++|+++|++|||+..++.+|.+||.++|..||+++++.++ +.+||||||||++|
T Consensus 3 ~iILAS~SprR~elL~~~gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~-------~~~vI~aDTvV~~~ 75 (192)
T PRK00234 3 PLLLASSSPYRRELLARLRLPFTWASPDIDESHRPDESAEELVRRLARQKAEALAGSHP-------QHLIIGSDQVAVLG 75 (192)
T ss_pred CEEEecCCHHHHHHHHHCCCCcEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-------CCEEEEeCeEEEeC
Confidence 69999999999999999999999999999999988899999999999999999987653 47999999999999
Q ss_pred CeeeccCCC
Q 033033 119 SPLFAHYNL 127 (129)
Q Consensus 119 g~IlgKP~~ 127 (129)
|+|||||..
T Consensus 76 g~Il~KP~~ 84 (192)
T PRK00234 76 GQILGKPHT 84 (192)
T ss_pred CEECCCCCC
Confidence 999999975
No 9
>PRK00032 Maf-like protein; Reviewed
Probab=99.96 E-value=4.1e-29 Score=193.40 Aligned_cols=83 Identities=24% Similarity=0.310 Sum_probs=77.7
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEeC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFNS 118 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~d 118 (129)
+|||||+||||++||+++|++|+++|+++||+..++.+|.+||.++|+.||+++++++. ++.+||||||||++|
T Consensus 3 ~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~------~~~~vI~aDTvV~~~ 76 (190)
T PRK00032 3 SLYLASGSPRRRELLTQLGVPFEVLVPGIEEQRQPGESAQQYVERLARDKAQAGVALAP------QDLPVLGADTIVVLD 76 (190)
T ss_pred CEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcC------CCCEEEEeCeEEEEC
Confidence 69999999999999999999999999999999988899999999999999999988653 357999999999999
Q ss_pred CeeeccCCC
Q 033033 119 SPLFAHYNL 127 (129)
Q Consensus 119 g~IlgKP~~ 127 (129)
|+|||||..
T Consensus 77 g~IlgKP~~ 85 (190)
T PRK00032 77 GEVLEKPRD 85 (190)
T ss_pred CEEecCCCC
Confidence 999999975
No 10
>PRK14367 Maf-like protein; Provisional
Probab=99.96 E-value=6e-29 Score=194.04 Aligned_cols=89 Identities=29% Similarity=0.376 Sum_probs=78.7
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEeC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFNS 118 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~d 118 (129)
+|||||+||||++||+++|++|+++|++|||+..++.+|.+||.++|+.||+++++.+.......++.+||||||||++|
T Consensus 3 ~iILAS~SprR~eLL~~~Gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~~~~~~vI~aDTvV~~d 82 (202)
T PRK14367 3 TLYLGSNSPRRMEILTQLGYRVVKLPAGIDETVKAGETPARYVQRMAEEKNRTALTLFCETNGTMPDFPLITADTCVVSD 82 (202)
T ss_pred CEEEeCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhccccccCCCCEEEEeCcEEEEC
Confidence 79999999999999999999999999999999888889999999999999999987652111112457999999999999
Q ss_pred CeeeccCCC
Q 033033 119 SPLFAHYNL 127 (129)
Q Consensus 119 g~IlgKP~~ 127 (129)
|+|||||..
T Consensus 83 g~IlgKP~~ 91 (202)
T PRK14367 83 GIILGKPRS 91 (202)
T ss_pred CEEecCCCC
Confidence 999999975
No 11
>PRK00884 Maf-like protein; Reviewed
Probab=99.96 E-value=4.8e-29 Score=193.60 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=77.3
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEeC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFNS 118 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~d 118 (129)
+|||||+||||++||+++|++|+++++++||+..++.+|.+||.++|..||+++++.++ +.+||||||||++|
T Consensus 3 ~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~VI~aDTvV~~~ 75 (194)
T PRK00884 3 QLILASTSPYRRALLEKLQLPFECAAPEVDETPRPGESPRQLVLRLAQEKAQSLASRYP-------DHLIIGSDQVCVLD 75 (194)
T ss_pred CEEEeCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-------CCEEEEeCeEEEEC
Confidence 69999999999999999999999999999999988889999999999999999987653 47999999999999
Q ss_pred CeeeccCCC
Q 033033 119 SPLFAHYNL 127 (129)
Q Consensus 119 g~IlgKP~~ 127 (129)
|+|||||..
T Consensus 76 g~ilgKP~~ 84 (194)
T PRK00884 76 GEITGKPLT 84 (194)
T ss_pred CEEecCCCC
Confidence 999999975
No 12
>PRK04694 Maf-like protein; Reviewed
Probab=99.96 E-value=6.2e-29 Score=192.32 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=78.4
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEeC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFNS 118 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~d 118 (129)
.|||||+||||++||+++|++|+++|+++||+..++.+|.+||.++|..||++|++++... .++.+||||||||++|
T Consensus 1 mlILAS~SprR~elL~~~g~~f~~~~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~---~~~~lvI~aDTvv~~~ 77 (190)
T PRK04694 1 MLYLASRSPRRRELLQRLDVPFQTLQLDVPEVRAADESPDHYVQRVALEKAHAGLALVQAA---DADAIVLGSDTEVVLG 77 (190)
T ss_pred CEEEcCCCHHHHHHHHHCCCCcEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcc---CCCCEEEEeCeEEEEC
Confidence 3899999999999999999999999999999998888999999999999999998876321 1458999999999999
Q ss_pred CeeeccCCC
Q 033033 119 SPLFAHYNL 127 (129)
Q Consensus 119 g~IlgKP~~ 127 (129)
|+|||||..
T Consensus 78 g~ilgKP~~ 86 (190)
T PRK04694 78 ERVFGKPVD 86 (190)
T ss_pred CEEecCCCC
Confidence 999999975
No 13
>PRK04425 Maf-like protein; Reviewed
Probab=99.96 E-value=6.3e-29 Score=193.21 Aligned_cols=84 Identities=24% Similarity=0.452 Sum_probs=78.5
Q ss_pred CCeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEE
Q 033033 37 PIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCF 116 (129)
Q Consensus 37 ~~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~ 116 (129)
.++|||||+||||++||+++|++|+++|++|||+..+..+|.++|.++|..||++++..++ +.+||||||||+
T Consensus 4 ~~~iILAS~SprR~elL~~~g~~f~v~~~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~~~-------~~lvI~aDTvV~ 76 (196)
T PRK04425 4 ELPLVLGTSSVFRREQMERLGIAFQAASPDFDETPMLGESAPQTALRLAEGKARSLTGRFP-------EALIVGADQVAW 76 (196)
T ss_pred CCcEEEeCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCC-------CCEEEEeCeEEE
Confidence 3689999999999999999999999999999999988899999999999999999987653 479999999999
Q ss_pred eCCeeeccCCC
Q 033033 117 NSSPLFAHYNL 127 (129)
Q Consensus 117 ~dg~IlgKP~~ 127 (129)
+||+|||||..
T Consensus 77 ~~g~ilgKP~~ 87 (196)
T PRK04425 77 CDGRQWGKPMN 87 (196)
T ss_pred ECCEEecCCCC
Confidence 99999999975
No 14
>PRK14366 Maf-like protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=191.63 Aligned_cols=83 Identities=29% Similarity=0.436 Sum_probs=77.0
Q ss_pred CeEEEecCCHHHHHHHHhcCC-ceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEE
Q 033033 38 IKIILGSSSMARKEILAEMGY-EFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCF 116 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi-~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~ 116 (129)
.+|||||+||||++||+++|+ .|+++|++|||+..++.+|.+||.++|..||++|++.++ +.+||||||||+
T Consensus 5 ~~iILAS~SprR~elL~~~G~~~~~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~vI~ADTvV~ 77 (195)
T PRK14366 5 DNLILASSSKQRLALLEQIGVVPGEIVSPDIDESPLKKELPKDYSIRMAKEKAEKVQSLRP-------DKFVLGADTVVC 77 (195)
T ss_pred CeEEEeCCCHHHHHHHHhCCCCCCEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEEE
Confidence 579999999999999999999 569999999999988889999999999999999987643 479999999999
Q ss_pred eCCeeeccCCC
Q 033033 117 NSSPLFAHYNL 127 (129)
Q Consensus 117 ~dg~IlgKP~~ 127 (129)
+||+|||||..
T Consensus 78 ~~g~ilgKP~~ 88 (195)
T PRK14366 78 CGRRILLKAET 88 (195)
T ss_pred ECCEEecCCCC
Confidence 99999999975
No 15
>PRK01839 Maf-like protein; Reviewed
Probab=99.96 E-value=1.9e-28 Score=192.14 Aligned_cols=95 Identities=29% Similarity=0.396 Sum_probs=81.4
Q ss_pred ccccCCCCCCeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 033033 29 GMARSESSPIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKS------IRKDKPEDLVMALAEAKAEAIRSRLQSAGQL 102 (129)
Q Consensus 29 ~~~~~~~~~~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~------~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~ 102 (129)
+|+.+. .++|||||+||||++||+++|++|+++|++|||+. ..+.+|.+||.++|+.||+++++++....
T Consensus 3 ~~~~~~--~~~lILAS~SprR~elL~~~gi~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~l~~~~-- 78 (209)
T PRK01839 3 SMAAPL--FPFLYLASQSPRRQELLQQLGVRFELLLPRPDEDAEALEAELPGEAPDDYVQRVCVAKAEAARARLVARG-- 78 (209)
T ss_pred Cccccc--CCCEEEeCCCHHHHHHHHHCCCCeEEeCCCCCcCccccccCCCCCCHHHHHHHHHHHHHHHHHHhhcccc--
Confidence 566664 35799999999999999999999999999999974 34578999999999999999998763211
Q ss_pred CCCCEEEEccceEEeCCeeeccCCC
Q 033033 103 NPTTLLITADTVCFNSSPLFAHYNL 127 (129)
Q Consensus 103 ~~~~iVIgADTVV~~dg~IlgKP~~ 127 (129)
.++.+||||||||++||+|||||..
T Consensus 79 ~~~~lvI~aDTvV~~~g~IlgKP~~ 103 (209)
T PRK01839 79 LPAAPVLVADTTVTIDGAILGKPAD 103 (209)
T ss_pred CCCCEEEEeCeEEEECCEEecCCCC
Confidence 2357999999999999999999975
No 16
>PRK00648 Maf-like protein; Reviewed
Probab=99.96 E-value=1.5e-28 Score=190.31 Aligned_cols=84 Identities=40% Similarity=0.519 Sum_probs=77.7
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEE-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEE
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVV-TAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCF 116 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vv-psd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~ 116 (129)
++|||||+||||++||+++|++|+++ ++++||+..+..+|.+||.++|+.||+++++++. ++.+||||||||+
T Consensus 3 ~~lILAS~SprR~elL~~~g~~f~v~~~~~~dE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~------~~~~VI~aDTvV~ 76 (191)
T PRK00648 3 YKIILASSSPRRKEILEGFRIPFEVVPSPFVEESYPYSLDPEEITLELARLKAEAVRSDLF------PDELIITADTIVW 76 (191)
T ss_pred CcEEEeCCCHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhC------CCCEEEEeCeEEE
Confidence 67999999999999999999999999 7899999888889999999999999999988653 3589999999999
Q ss_pred eCCeeeccCCC
Q 033033 117 NSSPLFAHYNL 127 (129)
Q Consensus 117 ~dg~IlgKP~~ 127 (129)
+||+|||||..
T Consensus 77 ~~g~ilgKP~~ 87 (191)
T PRK00648 77 YDGKVLGKPKD 87 (191)
T ss_pred ECCEEeCCCCC
Confidence 99999999975
No 17
>PRK02478 Maf-like protein; Reviewed
Probab=99.96 E-value=1.1e-28 Score=192.02 Aligned_cols=83 Identities=34% Similarity=0.520 Sum_probs=76.1
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEc
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIR------KDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITA 111 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~------~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgA 111 (129)
.+|||||+||||++||+++|++|+++++++||+.+. +.+|.++|.++|+.||++|+..++ +.+||||
T Consensus 3 ~~iILAS~SprR~elL~~~g~~f~v~~~~idE~~~~~~~~~~~~~p~~~v~~lA~~Ka~~v~~~~~-------~~ivI~a 75 (199)
T PRK02478 3 VKLILASKSPFRRALLENAGLEFSAAAADIDERAVEAPLEESGATPEDVALVLAEAKAIDVSERFP-------GALVIGC 75 (199)
T ss_pred CcEEEeCCCHHHHHHHHHCCCCeEEecCCCCCCccccccccCCCCHHHHHHHHHHHHHHHHHHHCC-------CCEEEEe
Confidence 479999999999999999999999999999998754 368999999999999999988653 4799999
Q ss_pred cceEEeCCeeeccCCC
Q 033033 112 DTVCFNSSPLFAHYNL 127 (129)
Q Consensus 112 DTVV~~dg~IlgKP~~ 127 (129)
||||++||+|||||..
T Consensus 76 DTvV~~~g~ilgKP~~ 91 (199)
T PRK02478 76 DQTMSLGDEVFHKPKD 91 (199)
T ss_pred CeEEEECCEEecCCCC
Confidence 9999999999999975
No 18
>PRK14363 Maf-like protein; Provisional
Probab=99.96 E-value=1.5e-28 Score=192.20 Aligned_cols=83 Identities=29% Similarity=0.451 Sum_probs=76.0
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEe
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFN 117 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~ 117 (129)
++|||||+||||++||+++|++|+++|+++||+.. .+|.+||.++|..||++|++++.. ++.+||||||||++
T Consensus 1 ~~iILAS~SprR~elL~~~G~~f~v~~~~iDE~~~--~~P~~~v~~lA~~KA~~v~~~~~~-----~~~lvI~aDTVV~~ 73 (204)
T PRK14363 1 MRIILASSSPRRRQLMELLGIEFEVEKPDVEEEFL--ESPEETVRELSLRKAEWVFKKRKE-----EEILVIGSDTVVVL 73 (204)
T ss_pred CcEEEeCCCHHHHHHHHhCCCCeEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHhccC-----CCCEEEEeCeEEEE
Confidence 47999999999999999999999999999999974 689999999999999999887532 35899999999999
Q ss_pred CCeeeccCCC
Q 033033 118 SSPLFAHYNL 127 (129)
Q Consensus 118 dg~IlgKP~~ 127 (129)
||+|||||..
T Consensus 74 ~g~IlgKP~~ 83 (204)
T PRK14363 74 DGNILGKPES 83 (204)
T ss_pred CCEEcCCCCC
Confidence 9999999975
No 19
>PRK01526 Maf-like protein; Reviewed
Probab=99.96 E-value=1.9e-28 Score=191.68 Aligned_cols=86 Identities=31% Similarity=0.416 Sum_probs=78.6
Q ss_pred CCCeEEEecCCHHHHHHHHhcCC-ceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccce
Q 033033 36 SPIKIILGSSSMARKEILAEMGY-EFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTV 114 (129)
Q Consensus 36 ~~~~iILASsSPrR~elL~~lgi-~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTV 114 (129)
+.++|||||+||||++||+++|+ .|+++|++|||+..+..+|.+||.++|+.||++|+++++ ++.+|||||||
T Consensus 6 ~~~~lILAS~SprR~elL~~~g~~~~~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~------~~~~VI~aDTv 79 (205)
T PRK01526 6 KNLPIILASSSPARIELLNRIKIIPSQIIPADIDETPNLRELPAPLAIRLAYEKAIKIASQIE------ESAIIIAADTV 79 (205)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCCCceEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC------CCCEEEEeCeE
Confidence 34789999999999999999999 567999999999988889999999999999999998764 24799999999
Q ss_pred EEeCCeeeccCCC
Q 033033 115 CFNSSPLFAHYNL 127 (129)
Q Consensus 115 V~~dg~IlgKP~~ 127 (129)
|++||+|||||..
T Consensus 80 V~~~g~IlgKP~~ 92 (205)
T PRK01526 80 AAVGRRILPKATT 92 (205)
T ss_pred EEECCEEecCCCC
Confidence 9999999999975
No 20
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=99.96 E-value=1.3e-28 Score=188.94 Aligned_cols=82 Identities=44% Similarity=0.669 Sum_probs=77.4
Q ss_pred EEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEeCC
Q 033033 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFNSS 119 (129)
Q Consensus 40 iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~dg 119 (129)
|||||+||||++||+++|++|+++|++|||+..+..+|.+||.++|..||+++++.++ ++.+||||||||++||
T Consensus 1 iILaS~SprR~elL~~~g~~f~~~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~------~~~liI~aDtvv~~~g 74 (180)
T cd00555 1 LILASASPRRRELLEQLGIPFEVVPSDIDETPIKGESPEDYVLRLAEAKAEAVAARLP------PDALVIGADTVVVLDG 74 (180)
T ss_pred CEECCCCHHHHHHHHhCCCCeEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC------CCCEEEEecEEEEECC
Confidence 6999999999999999999999999999999999899999999999999999998764 2579999999999999
Q ss_pred eeeccCCC
Q 033033 120 PLFAHYNL 127 (129)
Q Consensus 120 ~IlgKP~~ 127 (129)
+|||||..
T Consensus 75 ~il~KP~~ 82 (180)
T cd00555 75 RILGKPKD 82 (180)
T ss_pred EEEcCCCC
Confidence 99999975
No 21
>PRK14362 Maf-like protein; Provisional
Probab=99.95 E-value=2.7e-28 Score=191.12 Aligned_cols=84 Identities=31% Similarity=0.398 Sum_probs=76.8
Q ss_pred CCeEEEecCCHHHHHHHHhcCCceEEEcCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceE
Q 033033 37 PIKIILGSSSMARKEILAEMGYEFTVVTAEIDEK-SIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVC 115 (129)
Q Consensus 37 ~~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~-~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV 115 (129)
..+|||||+||||++||+++|++|+++++++||+ ...+.+|.+||.++|+.||++++++++ +.+||||||||
T Consensus 11 ~~~iILAS~SprR~eLL~~~g~~f~v~~~~~dEe~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~VI~ADTvV 83 (207)
T PRK14362 11 ACPVVLASGSPRRREFLEQMGLPFEVILPGAAEPSPIEGEQPEAYARRAAEAKARAVAADHA-------GRLVIAADTVV 83 (207)
T ss_pred CceEEEeCCCHHHHHHHHHCCCCcEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEE
Confidence 3579999999999999999999999999999995 466788999999999999999988753 47999999999
Q ss_pred EeCCeeeccCCC
Q 033033 116 FNSSPLFAHYNL 127 (129)
Q Consensus 116 ~~dg~IlgKP~~ 127 (129)
++||+|||||..
T Consensus 84 ~~~g~ilgKP~~ 95 (207)
T PRK14362 84 ALDGMILGKPAD 95 (207)
T ss_pred EeCCEEcCCCCC
Confidence 999999999975
No 22
>PRK01441 Maf-like protein; Reviewed
Probab=99.95 E-value=2.5e-28 Score=191.06 Aligned_cols=90 Identities=31% Similarity=0.385 Sum_probs=79.2
Q ss_pred CCeEEEecCCHHHHHHHHhcCCceE-EEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceE
Q 033033 37 PIKIILGSSSMARKEILAEMGYEFT-VVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVC 115 (129)
Q Consensus 37 ~~~iILASsSPrR~elL~~lgi~F~-vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV 115 (129)
+++|||||+||||++||+++|++|. ++|++|||+..++.+|.+||.++|+.||++|++++..+ ...++.+||||||||
T Consensus 4 ~~~iILAS~SprR~elL~~~Gi~f~~v~~~~iDE~~~~~~~p~~~v~~lA~~Ka~~v~~~~~~~-~~~~~~~vI~aDTvV 82 (207)
T PRK01441 4 RPKLVLASGSPRRVELLNQAGIEPDRLMPADIDETPKRAEHPRSLARRLSREKAEAALEALQGD-DDWRGAYILAADTVV 82 (207)
T ss_pred CCcEEEeCCCHHHHHHHHhcCCCCeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccc-ccCCCcEEEecCEEE
Confidence 3689999999999999999999875 78999999998889999999999999999998876421 012457999999999
Q ss_pred EeCCeeeccCCC
Q 033033 116 FNSSPLFAHYNL 127 (129)
Q Consensus 116 ~~dg~IlgKP~~ 127 (129)
++||+|||||..
T Consensus 83 ~~~g~il~KP~~ 94 (207)
T PRK01441 83 AVGRRILPKAEL 94 (207)
T ss_pred EECCEEcCCCCC
Confidence 999999999975
No 23
>PRK14365 Maf-like protein; Provisional
Probab=99.95 E-value=2.5e-28 Score=189.91 Aligned_cols=82 Identities=28% Similarity=0.440 Sum_probs=77.1
Q ss_pred eEEEecCCHHHHHHHHhc-CCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEe
Q 033033 39 KIILGSSSMARKEILAEM-GYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFN 117 (129)
Q Consensus 39 ~iILASsSPrR~elL~~l-gi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~ 117 (129)
+|||||+||||++||+++ |++|+++|++|||+..++.+|.+|+.++|..||++++++++ +.+||||||||++
T Consensus 3 ~iILaSsSprR~elL~~~~g~~f~vi~~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~-------~~~vI~aDTvV~~ 75 (197)
T PRK14365 3 RIILASASPRRKELLKQLIGDNFLVYPSSYEEPPQPGLDPEELLLKHSLEKARDVAKHFD-------SGIIISADTSVFC 75 (197)
T ss_pred CEEEeCCCHHHHHHHhcCcCcCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEEEE
Confidence 699999999999999995 99999999999999998899999999999999999988753 4799999999999
Q ss_pred CCeeeccCCC
Q 033033 118 SSPLFAHYNL 127 (129)
Q Consensus 118 dg~IlgKP~~ 127 (129)
+|+|||||..
T Consensus 76 ~g~Il~KP~~ 85 (197)
T PRK14365 76 NGEVLGKPAS 85 (197)
T ss_pred CCEEecCCCC
Confidence 9999999975
No 24
>PRK14361 Maf-like protein; Provisional
Probab=99.95 E-value=3.2e-28 Score=188.00 Aligned_cols=80 Identities=34% Similarity=0.399 Sum_probs=74.4
Q ss_pred EEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEeCC
Q 033033 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFNSS 119 (129)
Q Consensus 40 iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~dg 119 (129)
|||||+||||++||+++|++|+++++++||+. ...+|.+||.++|..||++++.+++ +.+||||||||++||
T Consensus 1 lILAS~SprR~elL~~~g~~f~v~~~~~dE~~-~~~~p~~~v~~lA~~Ka~~v~~~~~-------~~~vI~aDTvV~~~g 72 (187)
T PRK14361 1 VILASGSPRRRELLENLGVPFQVVVSGEAEDS-TETDPARLAAELALLKARAVARLHP-------DAVVIAADTVVALGG 72 (187)
T ss_pred CEEccCCHHHHHHHHHCCCCcEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEEEECC
Confidence 69999999999999999999999999999998 5578999999999999999987653 479999999999999
Q ss_pred eeeccCCC
Q 033033 120 PLFAHYNL 127 (129)
Q Consensus 120 ~IlgKP~~ 127 (129)
+|||||..
T Consensus 73 ~ilgKP~~ 80 (187)
T PRK14361 73 VLLAKPAD 80 (187)
T ss_pred EEecCCCC
Confidence 99999975
No 25
>PF02545 Maf: Maf-like protein; InterPro: IPR003697 Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea. The Maf protein shares substantial amino acid sequence identity with the Escherichia coli OrfE protein [].; GO: 0005737 cytoplasm; PDB: 2P5X_A 1EXC_B 1EX2_A.
Probab=99.95 E-value=1.9e-28 Score=190.07 Aligned_cols=84 Identities=43% Similarity=0.651 Sum_probs=58.9
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-CEEEEccceE
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKD-KPEDLVMALAEAKAEAIRSRLQSAGQLNPT-TLLITADTVC 115 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~-~p~e~v~~lA~~KA~av~~~l~~~~~~~~~-~iVIgADTVV 115 (129)
|+|||||+||||++||+++|++|++++++|||+..... +|.++|.++|.+||+++...+.. + .+||||||||
T Consensus 1 M~iILaS~SprR~elL~~~g~~f~v~~~~~dE~~~~~~~~p~~~v~~lA~~Ka~~~~~~~~~------~~~~vi~aDTvv 74 (195)
T PF02545_consen 1 MRIILASSSPRRRELLKQLGINFEVIPSDIDEDAIRKESDPEEYVQRLAEAKAEAVVSKLYP------DSAIVIGADTVV 74 (195)
T ss_dssp --EEE----HHHHHHHHCTT--EEE---------GCCSSSHHHHHHHHHHHHHHHHHHCCHC------CHSEEEEEEEEE
T ss_pred CCEEEeCCCHHHHHHHHHCCCCeEEEcCCCCCCCCccccCHHHHHHHHHHHHHHHHHhhhcc------cceEEEEEeeee
Confidence 48999999999999999999999999999999996555 69999999999999998877653 4 8999999999
Q ss_pred EeCCeeeccCCC
Q 033033 116 FNSSPLFAHYNL 127 (129)
Q Consensus 116 ~~dg~IlgKP~~ 127 (129)
++||+|||||..
T Consensus 75 ~~~g~Il~KP~~ 86 (195)
T PF02545_consen 75 VCDGEILGKPKD 86 (195)
T ss_dssp ECTTEEE-S-SS
T ss_pred eeeeEEEeCCCC
Confidence 999999999975
No 26
>PRK14364 Maf-like protein; Provisional
Probab=99.95 E-value=8.1e-28 Score=184.88 Aligned_cols=79 Identities=28% Similarity=0.383 Sum_probs=74.7
Q ss_pred EecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEeCCee
Q 033033 42 LGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFNSSPL 121 (129)
Q Consensus 42 LASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~dg~I 121 (129)
|||+||||++||+++|++|+++|++|||+..+..+|.+||.++|..||++|+++++ +.+||||||||++||+|
T Consensus 1 LAS~SprR~elL~~~g~~f~v~~~~~dE~~~~~~~p~~~~~~lA~~KA~~v~~~~~-------~~~vI~aDTvV~~~g~i 73 (181)
T PRK14364 1 LASSSPRRRELLQQLGLNFEIYSPDIDESVHEGELVHQYVERLAREKAQAVLNIFP-------DSVIIAADTSLGLDGQI 73 (181)
T ss_pred CCCCCHHHHHHHHHCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCeEEEECCEE
Confidence 89999999999999999999999999999988889999999999999999988653 47999999999999999
Q ss_pred eccCCC
Q 033033 122 FAHYNL 127 (129)
Q Consensus 122 lgKP~~ 127 (129)
||||..
T Consensus 74 lgKP~~ 79 (181)
T PRK14364 74 IGKPDS 79 (181)
T ss_pred ecCCCC
Confidence 999975
No 27
>cd00985 Maf_Ham1 Maf_Ham1. Maf, a nucleotide binding protein, has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides, such as hypoxanthine/xanthine NTP, but not standard nucleotides.
Probab=99.86 E-value=1.4e-21 Score=140.91 Aligned_cols=80 Identities=35% Similarity=0.420 Sum_probs=74.5
Q ss_pred EEEecCCHHHHHHHHhcC-CceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEeC
Q 033033 40 IILGSSSMARKEILAEMG-YEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFNS 118 (129)
Q Consensus 40 iILASsSPrR~elL~~lg-i~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~d 118 (129)
|||||+||||+++|+++| ++|.++++++||+..... |.+++.++|..||+++++.++ +.+||++||+|++|
T Consensus 1 iiLaS~s~~R~~~l~~~~~~~~~~~~~~i~E~~~~~~-~~~~~~~~A~~Ka~~~~~~~~-------~~~vI~~Dt~v~~~ 72 (131)
T cd00985 1 LILASGSPRRLEELKQIGGIEFEVLPSDIDETGLKGE-PEDTVEELALLKARAVAERLP-------DAPVIADDTGLVVD 72 (131)
T ss_pred CEEecCChHHHHHHHhcCCCCEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHCC-------CCEEEECCcEEEEC
Confidence 699999999999999999 999999999999998877 999999999999999988763 36899999999999
Q ss_pred CeeeccCCC
Q 033033 119 SPLFAHYNL 127 (129)
Q Consensus 119 g~IlgKP~~ 127 (129)
|+|++||-.
T Consensus 73 g~~~~kp~~ 81 (131)
T cd00985 73 GRPGGKPAR 81 (131)
T ss_pred CEeCcCCCC
Confidence 999999964
No 28
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.8e-21 Score=151.58 Aligned_cols=91 Identities=35% Similarity=0.498 Sum_probs=82.9
Q ss_pred CCCeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccc
Q 033033 36 SPIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRK--DKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (129)
Q Consensus 36 ~~~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~--~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADT 113 (129)
..++|||||+||||++|++.+|++|++++|+|+|++++. .+|.+|+..+|.+||.+|.++++...+ ..+.+||+|||
T Consensus 8 ~~~riiL~S~s~rrk~i~~~~G~~~~~~~S~feEnl~k~~~~~p~~yv~~tA~~KA~~I~erL~~~Ed-~~~~~vi~adt 86 (209)
T KOG1509|consen 8 KGKRIILASASPRRKQILAEMGLNLEVVVSTFEENLIKSSFETPEDYVVETAKQKAEEIIERLGDGED-SFPDVVISADT 86 (209)
T ss_pred cCcEEEEecCCchHHHHHHHcCCceEEEeccchhhchhhccCCHHHHHHHHHHHHHHHHHHHhhcccc-CCccccccccE
Confidence 457999999999999999999999999999999999988 799999999999999999999974321 22689999999
Q ss_pred eEEeCCeeeccCCC
Q 033033 114 VCFNSSPLFAHYNL 127 (129)
Q Consensus 114 VV~~dg~IlgKP~~ 127 (129)
|+..+++|+|||..
T Consensus 87 I~~~~~~Iyekp~d 100 (209)
T KOG1509|consen 87 ITTDGGEIYEKPVD 100 (209)
T ss_pred EEEeccEEecCCCC
Confidence 99999999999975
No 29
>PRK14824 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=91.36 E-value=2 Score=33.69 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=46.3
Q ss_pred eEEEecCCHHHHHHHHh-cC-CceEEEcC----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcc
Q 033033 39 KIILGSSSMARKEILAE-MG-YEFTVVTA----EIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITAD 112 (129)
Q Consensus 39 ~iILASsSPrR~elL~~-lg-i~F~vvps----d~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgAD 112 (129)
+|++||+-+.-.+-++. ++ +.+++++. +++|+.. --...|..||+.+++.+. .+||+=|
T Consensus 2 ~i~~aT~N~~K~~E~~~iL~~~~i~v~~~~~~~e~~E~~~-------tf~eNA~~KA~~~~~~~~--------~pviaDD 66 (201)
T PRK14824 2 KILLATTNEGKVREIKRLLSDLGIEVLSPDKKIEVEEDGE-------TFLENAYLKARAYAEFYK--------IPVLADD 66 (201)
T ss_pred EEEEECCChHHHHHHHHHHhhcCCEEEEcCcCCCCCCCCC-------CHHHHHHHHHHHHHHHHC--------CCEEEec
Confidence 69999999987665554 32 23445443 3333321 245578999999988663 4699999
Q ss_pred ceEEeCCeeeccCC
Q 033033 113 TVCFNSSPLFAHYN 126 (129)
Q Consensus 113 TVV~~dg~IlgKP~ 126 (129)
|=.+++- +=|-|+
T Consensus 67 SGL~vdA-L~G~PG 79 (201)
T PRK14824 67 SGLEVPA-LEGYPG 79 (201)
T ss_pred cEEEecc-cCCCCc
Confidence 9887764 234443
No 30
>PRK14821 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=90.55 E-value=1.6 Score=33.57 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=45.2
Q ss_pred eEEEecCCHHHHHHHHh-cC-CceEEEcCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccce
Q 033033 39 KIILGSSSMARKEILAE-MG-YEFTVVTAE--IDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTV 114 (129)
Q Consensus 39 ~iILASsSPrR~elL~~-lg-i~F~vvpsd--~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTV 114 (129)
+|++||+-+.-.+=++. ++ +.+++.+.. +.|.. ..+ -...|..||+.+++.++ .+||+=||=
T Consensus 2 ~i~~aT~N~~K~~E~~~il~~~~i~v~~~~~~~~E~~--~~t----~~enA~~KA~~~~~~~~--------~pvlaDDSG 67 (184)
T PRK14821 2 KIYFATGNKGKVEEAKIILKPLGIEVEQIKIEYPEIQ--ADT----LEEVAAFGAKWVYNKLN--------RPVIVEDSG 67 (184)
T ss_pred EEEEECCChhHHHHHHHHHhhcCcEEEECCCCCCCCC--CCC----HHHHHHHHHHHHHHHHC--------CCEEEEcCE
Confidence 69999999987655544 22 234444433 32221 122 34568899999988763 469999997
Q ss_pred EEeCCeeeccCC
Q 033033 115 CFNSSPLFAHYN 126 (129)
Q Consensus 115 V~~dg~IlgKP~ 126 (129)
++++. +=|.|+
T Consensus 68 L~v~a-L~g~PG 78 (184)
T PRK14821 68 LFIEA-LNGFPG 78 (184)
T ss_pred Eeehh-hCCCCc
Confidence 76553 224554
No 31
>PRK00120 dITP/XTP pyrophosphatase; Reviewed
Probab=89.52 E-value=3.6 Score=32.03 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=46.2
Q ss_pred eEEEecCCHHHHHHHHh-cC-CceEEEcC-CC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccc
Q 033033 39 KIILGSSSMARKEILAE-MG-YEFTVVTA-EI--DEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (129)
Q Consensus 39 ~iILASsSPrR~elL~~-lg-i~F~vvps-d~--DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADT 113 (129)
+|++||+-+.-.+=++. ++ +.+++... ++ +|-...+.+ ....|..||+.+++.++ .+||+=||
T Consensus 2 ~i~~aT~N~~K~~E~~~il~~~~~~i~~~~~~~~~e~~E~~~s----~~enA~~KA~~~~~~~~--------~pviaDDS 69 (196)
T PRK00120 2 KIVLASHNAGKLRELKALLAPFGIEVVSQGELGVPEPEETGTT----FVENALIKARHAAKATG--------LPALADDS 69 (196)
T ss_pred EEEEEcCCHHHHHHHHHHHhhcCCEEEehhhcCCCCCCCCCCC----HHHHHHHHHHHHHHHHC--------CCEEEEcC
Confidence 69999999987655544 22 22344432 22 222111223 34578899999988763 46999999
Q ss_pred eEEeCCeeeccCC
Q 033033 114 VCFNSSPLFAHYN 126 (129)
Q Consensus 114 VV~~dg~IlgKP~ 126 (129)
=..++. +=|.|+
T Consensus 70 GL~i~a-L~g~PG 81 (196)
T PRK00120 70 GLCVDA-LGGAPG 81 (196)
T ss_pred EEEEcc-cCCCCc
Confidence 888764 334554
No 32
>PRK14823 putative deoxyribonucleoside-triphosphatase; Provisional
Probab=89.30 E-value=2.9 Score=32.45 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=47.0
Q ss_pred eEEEecCCHHHHHHHHh-cCCceEEEcC-------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEE
Q 033033 39 KIILGSSSMARKEILAE-MGYEFTVVTA-------EIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLIT 110 (129)
Q Consensus 39 ~iILASsSPrR~elL~~-lgi~F~vvps-------d~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIg 110 (129)
+|++||+-+.-.+=++. ++-.+++++. +++|+. .+ -...|..||+.+++.++ .+||+
T Consensus 2 ki~~aT~N~~K~~E~~~il~~~~~v~~~~~~~~~~~~~E~~---~t----f~enA~~KA~~~~~~~~--------~pvla 66 (191)
T PRK14823 2 KLVFATNNKHKLEEIRSILPEKIELLSLSDIGCHEDIPETA---DT----LEGNALLKAEYVYKKYG--------YDCFA 66 (191)
T ss_pred EEEEECCChhHHHHHHHHhcCCCEEEehhhcCCCCCCCCCC---CC----HHHHHHHHHHHHHHHHC--------CCEEE
Confidence 69999999987766665 4423555422 333432 12 34578899999988763 46999
Q ss_pred ccceEEeCCeeeccCC
Q 033033 111 ADTVCFNSSPLFAHYN 126 (129)
Q Consensus 111 ADTVV~~dg~IlgKP~ 126 (129)
=||=.+++. .=|.|+
T Consensus 67 DDSGL~v~a-L~G~PG 81 (191)
T PRK14823 67 DDTGLEVEA-LNGAPG 81 (191)
T ss_pred ecCEEEEec-cCCCcc
Confidence 999887664 224444
No 33
>TIGR00042 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family. Saccharomyces cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine, which can be a natural product of monooxygenase activity on adenine. Methanococcus jannaschii MJ0226 and E. coli RdgB are also characterized as pyrophosphatases active against non-standard purines NTPs. E. coli RdgB appears to act by intercepting non-canonical deoxyribonucleotide triphosphates from replication precursor pools.
Probab=87.04 E-value=6.3 Score=30.31 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=45.9
Q ss_pred eEEEecCCHHHHHHHHh-cC-CceEEE-cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceE
Q 033033 39 KIILGSSSMARKEILAE-MG-YEFTVV-TAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVC 115 (129)
Q Consensus 39 ~iILASsSPrR~elL~~-lg-i~F~vv-psd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV 115 (129)
+|++||+.+.-.+-++. ++ +.++++ ..+++|....+.+. ...|..||+.+++.++ .+||+=||=.
T Consensus 1 ~i~~aT~N~~K~~E~~~il~~~~~~~~~~~~~~~~ee~g~t~----~enA~~KA~~~~~~~~--------~pvlaDDSGL 68 (184)
T TIGR00042 1 KIVFATGNPGKLKEVQSILSDLGDNEIEQLDLGYPEETGLTF----EENALLKAKHAAKILN--------KPVIAEDSGL 68 (184)
T ss_pred CEEEECCCHHHHHHHHHHHhhcCCEEEecccCCCCCCCCCCH----HHHHHHHHHHHHHHhC--------CCeEEcccEE
Confidence 48999999987655544 22 222333 34554322333343 4568899999988763 4699999988
Q ss_pred EeCCeeeccCC
Q 033033 116 FNSSPLFAHYN 126 (129)
Q Consensus 116 ~~dg~IlgKP~ 126 (129)
.++- .=|-|+
T Consensus 69 ~v~A-L~G~PG 78 (184)
T TIGR00042 69 FVDA-LNGFPG 78 (184)
T ss_pred EEhh-cCCCcc
Confidence 7653 224454
No 34
>cd00515 HAM1 NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.
Probab=87.02 E-value=5.1 Score=30.68 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=43.0
Q ss_pred EEEecCCHHHHHHHHh----cCCceEEEc--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccc
Q 033033 40 IILGSSSMARKEILAE----MGYEFTVVT--AEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (129)
Q Consensus 40 iILASsSPrR~elL~~----lgi~F~vvp--sd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADT 113 (129)
|++||+.+.-.+-++. ++++..... .+++|... + ....|..||+.+++.++ .+||+=||
T Consensus 1 i~~aT~N~~K~~E~~~il~~~~i~v~~~~~~~~~~E~~~---s----~~enA~~KA~~a~~~~~--------~pviadDs 65 (183)
T cd00515 1 IVFATGNKGKLKEFKEILAPFGIEVVSLKDIIDIEETGS---T----FEENALLKARAAAEALG--------LPVLADDS 65 (183)
T ss_pred CEEECCCHHHHHHHHHHHhhcCcEEEEcCcCCCCCCCCC---C----HHHHHHHHHHHHHHHHC--------CCEEEecc
Confidence 5788888877554444 455443334 34555542 2 45578899999988763 46999999
Q ss_pred eEEeCC
Q 033033 114 VCFNSS 119 (129)
Q Consensus 114 VV~~dg 119 (129)
=..++.
T Consensus 66 GL~i~a 71 (183)
T cd00515 66 GLCVDA 71 (183)
T ss_pred EEEEec
Confidence 887664
No 35
>PRK14822 nucleoside-triphosphatase; Provisional
Probab=86.23 E-value=8.1 Score=30.18 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=46.6
Q ss_pred eEEEecCCHHHHHHHHh-cC-CceEEEcC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcc
Q 033033 39 KIILGSSSMARKEILAE-MG-YEFTVVTA-EID---EKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITAD 112 (129)
Q Consensus 39 ~iILASsSPrR~elL~~-lg-i~F~vvps-d~D---E~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgAD 112 (129)
+|++||+-+.-.+-++. ++ +.+++++. ++. |-...+.+ ....|..||+.+++.++ .+||+=|
T Consensus 3 ~i~~aT~N~~K~~E~~~iL~~~~~~i~~~~~~~~~~e~~E~g~t----~~enA~~KA~~~~~~~~--------~pviaDD 70 (200)
T PRK14822 3 EIVIATKNKGKVREFKEIFEKFDIEVKSLADFPPIPEVEETGTT----FEENAILKAEAAAKALN--------KPVIADD 70 (200)
T ss_pred eEEEECCCHHHHHHHHHHHhhcCcEEEEchhcCCCCCCCCCCCC----HHHHHHHHHHHHHHHHC--------CCEEEec
Confidence 69999999988766655 32 23444432 221 21111223 34578899999998763 4699999
Q ss_pred ceEEeCCeeeccCC
Q 033033 113 TVCFNSSPLFAHYN 126 (129)
Q Consensus 113 TVV~~dg~IlgKP~ 126 (129)
|=.+++- .=|.|+
T Consensus 71 SGL~v~A-L~G~PG 83 (200)
T PRK14822 71 SGLEVDA-LNGAPG 83 (200)
T ss_pred cEEEEcc-cCCCCc
Confidence 9887664 234444
No 36
>PRK14826 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=84.70 E-value=8.9 Score=30.47 Aligned_cols=80 Identities=23% Similarity=0.217 Sum_probs=48.2
Q ss_pred CCCeEEEecCCHHHHHHHHh----cCCceEEEc-------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 033033 36 SPIKIILGSSSMARKEILAE----MGYEFTVVT-------AEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNP 104 (129)
Q Consensus 36 ~~~~iILASsSPrR~elL~~----lgi~F~vvp-------sd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~ 104 (129)
+..+|++||+-+.-.+=++. ++-.+++++ .++.|.. .+ -...|..||+.+++.++.. .+
T Consensus 7 ~~~~i~~aT~N~~K~~E~~~iL~~~~~~i~v~~~~~~~~~~~~~E~~---~t----f~eNA~~KA~~~~~~~~~~---~~ 76 (222)
T PRK14826 7 ETITIVLATGNRDKVRELRPLLEHISPLFSVRSLADLGVEVDIEETE---ET----LEGNALLKADAIFELLSDR---FP 76 (222)
T ss_pred CCCEEEEEcCChhHHHHHHHHHHhcCCCeEEEehhHcCCCCCCCCCC---CC----HHHHHHHHHHHHHHHhCCc---cc
Confidence 45789999999987554444 311244444 1333332 12 3457889999998876420 01
Q ss_pred CCEEEEccceEEeCCeeeccCC
Q 033033 105 TTLLITADTVCFNSSPLFAHYN 126 (129)
Q Consensus 105 ~~iVIgADTVV~~dg~IlgKP~ 126 (129)
..+||+=||=.+++- .=|.|+
T Consensus 77 ~~~vlaDDSGL~vdA-L~G~PG 97 (222)
T PRK14826 77 FLIALADDTGLEVDA-LGGAPG 97 (222)
T ss_pred CCcEEEecCcEEEcc-cCCCCc
Confidence 247899999887664 334444
No 37
>PF01725 Ham1p_like: Ham1 family; InterPro: IPR002637 This family contains the Saccharomyces cerevisiae (Baker's yeast) HAM1 protein P47119 from SWISSPROT and other hypothetical archaeal, bacterial and Caenorhabditis elegans proteins. S. cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine (HAP) which can be a natural product of monooxygenase activity on adenine. HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions [].; GO: 0016787 hydrolase activity; PDB: 3TQU_A 1VP2_B 3S86_D 1B78_A 2MJP_B 2Q16_A 2PYU_A 1K7K_A 2ZTI_A 2DVP_A ....
Probab=83.11 E-value=2.6 Score=32.37 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=38.4
Q ss_pred EEEecCCHHHHHHHHh-cC-CceEEE--------cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEE
Q 033033 40 IILGSSSMARKEILAE-MG-YEFTVV--------TAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLI 109 (129)
Q Consensus 40 iILASsSPrR~elL~~-lg-i~F~vv--------psd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVI 109 (129)
|++||+-+...+-++. ++ +.++++ ..+++|. +.+ ....|..||+.+++.+. .+||
T Consensus 1 i~~aT~N~~K~~E~~~~l~~~~i~v~~~~~~~~~~~~~~E~---~~t----~~enA~~KA~~~~~~~~--------~pvi 65 (189)
T PF01725_consen 1 IIFATGNKGKIREIQELLKPLGIEVISLIDLPEPDPEPEET---GET----FEENALIKAKAAAQQLG--------KPVI 65 (189)
T ss_dssp EEEE-S-HHHHHHHHHHCTTTTEEEEECEEECEE------B---SSS----HHHHHHHHHHHHHHHHS--------SSEE
T ss_pred CEEEcCCHHHHHHHHHHHhhcCCcEEeHHHcCccCcCCCcC---CCC----HHHHHHHHHHHHHHHhC--------CCEE
Confidence 6888888887665555 22 233332 2345554 223 34578899999998874 4599
Q ss_pred EccceEEeCC
Q 033033 110 TADTVCFNSS 119 (129)
Q Consensus 110 gADTVV~~dg 119 (129)
+-||=..++.
T Consensus 66 ~dDSGL~v~a 75 (189)
T PF01725_consen 66 ADDSGLEVDA 75 (189)
T ss_dssp EEEEEEEEGG
T ss_pred EeCcEEeHhh
Confidence 9999988763
No 38
>PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed
Probab=81.87 E-value=8.5 Score=32.59 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=46.1
Q ss_pred CeEEEecCCHHHHHHHHh-cC-CceEEEcCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEc
Q 033033 38 IKIILGSSSMARKEILAE-MG-YEFTVVTAE----IDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITA 111 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~-lg-i~F~vvpsd----~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgA 111 (129)
.+|++||+-+.-.+=++. ++ +.+++++.. ..|-...+.+ -...|..||+.+++.++ .+||+=
T Consensus 128 ~kIv~AT~N~~K~~E~~~iL~~~~iev~~l~~~~~~~Ei~Etg~T----f~ENA~~KA~~aa~~~g--------~pvLAD 195 (328)
T PRK02491 128 DTILIATRNEGKTKEFRKLFGKLGYKVENLNDYPDLPEVAETGMT----FEENARLKAETISRLTG--------KMVLAD 195 (328)
T ss_pred CeEEEEcCChhHHHHHHHHHhhcCcEEEehhhcCCCCCcCCCCCC----HHHHHHHHHHHHHHHHC--------CCEEEE
Confidence 479999999987654444 32 234444332 2222111223 34578899999998763 459999
Q ss_pred cceEEeCCeeeccCC
Q 033033 112 DTVCFNSSPLFAHYN 126 (129)
Q Consensus 112 DTVV~~dg~IlgKP~ 126 (129)
||=.+++- .=|-|+
T Consensus 196 DSGL~VdA-L~G~PG 209 (328)
T PRK02491 196 DSGLKVDA-LGGLPG 209 (328)
T ss_pred ccEEEEcc-cCCCCc
Confidence 99887654 234444
No 39
>PRK14825 putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional
Probab=71.60 E-value=26 Score=27.26 Aligned_cols=68 Identities=10% Similarity=0.167 Sum_probs=43.5
Q ss_pred eEEEecCCHHHHHHHHh-cC-CceEEE-cCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccc
Q 033033 39 KIILGSSSMARKEILAE-MG-YEFTVV-TAE--IDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (129)
Q Consensus 39 ~iILASsSPrR~elL~~-lg-i~F~vv-psd--~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADT 113 (129)
+|++||+-+.-.+-++. ++ ..+++. ..+ ++|.. .+ -...|..||+.+++.+.. ..+||+=||
T Consensus 3 ~i~~aT~N~~K~~E~~~il~~~~~~i~~~~~~~~~E~~---~t----f~enA~~KA~~~~~~~~~------~~pvlaDDS 69 (199)
T PRK14825 3 TLFFATTNINKINEVKQILDIPNIKIEIPQNFDIKETG---KT----FKENSLLKAKALFEILNN------KQPVFSEDS 69 (199)
T ss_pred eEEEECCChhHHHHHHHHHhhcCceEeecccCCCCCCC---CC----HHHHHHHHHHHHHHHHCC------CCcEEEecC
Confidence 69999999987665555 43 233332 233 33443 12 345788999999887631 246999999
Q ss_pred eEEeCC
Q 033033 114 VCFNSS 119 (129)
Q Consensus 114 VV~~dg 119 (129)
=.++|-
T Consensus 70 GL~vdA 75 (199)
T PRK14825 70 GLCIEA 75 (199)
T ss_pred eEEEhh
Confidence 877654
No 40
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]
Probab=68.41 E-value=3.9 Score=34.32 Aligned_cols=50 Identities=18% Similarity=0.373 Sum_probs=33.6
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEc--CCCCCCCCC--CCCHHHHHHHHHHHH
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEKSIR--KDKPEDLVMALAEAK 88 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvp--sd~DE~~~~--~~~p~e~v~~lA~~K 88 (129)
--++++||.||+..|+.+..++++.+ -|+|-+..+ ...-..+++.-|..|
T Consensus 120 Ga~VGTSSlRR~aql~~~rPdl~i~~lRGNVdTRL~KL~~g~yDAIILA~AGL~ 173 (307)
T COG0181 120 GAVVGTSSLRRQAQLKALRPDLKIEPLRGNVDTRLRKLDEGEYDAIILAAAGLK 173 (307)
T ss_pred CCccccchHHHHHHHHHhCCCCeEEeccCcHHHHHHHhhcCCccHHHHHHHHHH
Confidence 36899999999999999887776665 588876532 223334555444443
No 41
>PF01379 Porphobil_deam: Porphobilinogen deaminase, dipyromethane cofactor binding domain; InterPro: IPR022417 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the N-terminal domains 1 and 2 of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this domain consists of a duplication of two similar intertwined domains with three layers of (a/b/a) each. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A 3EQ1_B 3ECR_A.
Probab=65.93 E-value=5.7 Score=31.62 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=19.0
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEc--CCCCCC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEK 70 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvp--sd~DE~ 70 (129)
.-+.+++|+||+..|+.+..++++++ -|+|..
T Consensus 120 ga~IGTsS~RR~aql~~~~pdl~~~~iRGNv~TR 153 (215)
T PF01379_consen 120 GARIGTSSLRRRAQLKRLRPDLEVVPIRGNVDTR 153 (215)
T ss_dssp T-EEE---HHHHHHHHHH-TTSEEE---S-HHHH
T ss_pred ccccCCCCHHHHHHHHHhccCCeEEEecCCHHHH
Confidence 47899999999999999877666665 355443
No 42
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses.
Probab=64.77 E-value=6.9 Score=32.54 Aligned_cols=32 Identities=19% Similarity=0.349 Sum_probs=25.2
Q ss_pred EEEecCCHHHHHHHHhcCCceEEEc--CCCCCCC
Q 033033 40 IILGSSSMARKEILAEMGYEFTVVT--AEIDEKS 71 (129)
Q Consensus 40 iILASsSPrR~elL~~lgi~F~vvp--sd~DE~~ 71 (129)
-+.+++|+||+..|+.+..++++++ -|+|...
T Consensus 118 a~IGTsS~RR~aql~~~rpdl~~~~iRGNV~TRL 151 (292)
T cd00494 118 SVVGTSSLRRQAQLKRKRPDLKFEPLRGNVDTRL 151 (292)
T ss_pred CEEecCCHHHHHHHHHHCCCCEEEEcCCCHHHHH
Confidence 5789999999999999877766665 4666653
No 43
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=62.85 E-value=10 Score=29.10 Aligned_cols=40 Identities=33% Similarity=0.462 Sum_probs=29.0
Q ss_pred CeEEEecCCHHH-----HHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHH
Q 033033 38 IKIILGSSSMAR-----KEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMA 83 (129)
Q Consensus 38 ~~iILASsSPrR-----~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~ 83 (129)
.-||.+|.|-|. .++|+++|++|++.... .+.+|+.+...
T Consensus 5 V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvS------AHRTPe~m~~y 49 (162)
T COG0041 5 VGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVS------AHRTPEKMFEY 49 (162)
T ss_pred EEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEe------ccCCHHHHHHH
Confidence 359999999987 47999999999766432 34567655444
No 44
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=62.12 E-value=8.4 Score=32.11 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=26.3
Q ss_pred EEEecCCHHHHHHHHhcCCceEEEc--CCCCCCC
Q 033033 40 IILGSSSMARKEILAEMGYEFTVVT--AEIDEKS 71 (129)
Q Consensus 40 iILASsSPrR~elL~~lgi~F~vvp--sd~DE~~ 71 (129)
-+.+++|+||+..|+.+..++++++ -|+|...
T Consensus 122 a~IGTsS~RR~aql~~~~Pdl~~~~iRGNV~TRL 155 (295)
T PRK00072 122 AVVGTSSLRRQAQLLALRPDLEIKPLRGNVDTRL 155 (295)
T ss_pred CEEecCcHHHHHHHHHHCcCCEEEECccCHHHHH
Confidence 5789999999999999888888887 4666543
No 45
>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=59.74 E-value=84 Score=24.68 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=44.6
Q ss_pred CeEEEecCCHHHHHHHHh-c---CCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccc
Q 033033 38 IKIILGSSSMARKEILAE-M---GYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~-l---gi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADT 113 (129)
++|+|||+=+--..=++. + |+++......-+|- .-+.....-...|..||+++++.. +.+||+=||
T Consensus 2 ~ki~~AT~N~~K~~E~~~il~~~~~ei~~~~~~~~~~--e~eEtg~tf~enA~~Ka~~~a~~~--------g~pviaDDS 71 (194)
T COG0127 2 MKIVLATGNKGKLRELKSILAPGGIEIESLKELGVEI--EVEETGLTFEENALLKARAAAKAT--------GLPVIADDS 71 (194)
T ss_pred cEEEEEcCChHHHHHHHHHhcccCceEEEccccCCCC--CccchhhHHHHHHHHHHHHHHhhc--------CCcEEEecC
Confidence 479999998876554444 2 34444333322221 111233445667899999998763 367999999
Q ss_pred eEEeCC
Q 033033 114 VCFNSS 119 (129)
Q Consensus 114 VV~~dg 119 (129)
=+..+.
T Consensus 72 GL~v~a 77 (194)
T COG0127 72 GLCVDA 77 (194)
T ss_pred ceEEec
Confidence 877654
No 46
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=57.80 E-value=11 Score=31.03 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=29.1
Q ss_pred CCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHH
Q 033033 45 SSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALA 85 (129)
Q Consensus 45 sSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA 85 (129)
.-..|.++|+++|+++.++-+ |++. ....+|++++..+-
T Consensus 55 ~~~~k~~~l~~~Gvd~~~~~~-F~~~-~a~ls~e~Fi~~~l 93 (288)
T TIGR00083 55 PLEDKARQLQIKGVEQLLVVV-FDEE-FANLSALQFIDQLI 93 (288)
T ss_pred CHHHHHHHHHHcCCCEEEEeC-CCHH-HHcCCHHHHHHHHH
Confidence 447899999999998765544 7775 34678999987643
No 47
>TIGR00212 hemC porphobilinogen deaminase. Biosynthesis of cofactors, prosthetic groups, and carriers: Heme and porphyrin
Probab=57.58 E-value=11 Score=31.40 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.0
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEc--CCCCCC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEK 70 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvp--sd~DE~ 70 (129)
.-+.+++|+||+..|..+-.++++++ -|+|-+
T Consensus 117 ga~VGTsS~RR~aql~~~rPdl~i~~iRGNV~TR 150 (292)
T TIGR00212 117 GAKVGTSSLRRKAQLKAIRPDLKIEPLRGNIDTR 150 (292)
T ss_pred CCEeccCCHHHHHHHHHHCCCCEEEECcCCHHHH
Confidence 36899999999999999877777765 365554
No 48
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.16 E-value=11 Score=25.28 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=18.0
Q ss_pred HHHHhcCCceEEEcCCCCCC
Q 033033 51 EILAEMGYEFTVVTAEIDEK 70 (129)
Q Consensus 51 elL~~lgi~F~vvpsd~DE~ 70 (129)
++|+..|+.|+-+|+.+|=-
T Consensus 23 ~I~E~~~is~Eh~PSGID~~ 42 (76)
T cd04911 23 SILEDNGISYEHMPSGIDDI 42 (76)
T ss_pred HHHHHcCCCEeeecCCCccE
Confidence 68999999999999998863
No 49
>PRK01066 porphobilinogen deaminase; Provisional
Probab=56.12 E-value=12 Score=30.34 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=26.6
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEc--CCCCCCC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEKS 71 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvp--sd~DE~~ 71 (129)
.-+.+++|+||+..|..+-.++.+++ -|+|.+.
T Consensus 132 ga~IGTSS~RR~aql~~~rPdl~v~~iRGNV~TRL 166 (231)
T PRK01066 132 RPRIGSSSLRREELLKLLFPSGIILDIRGTIEERL 166 (231)
T ss_pred CCEEeCChHHHHHHHHHHCCCCEEEeCcCCHHHHH
Confidence 36889999999999999877777776 4777764
No 50
>PLN02691 porphobilinogen deaminase
Probab=53.48 E-value=14 Score=31.66 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=25.8
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEc--CCCCCCC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVT--AEIDEKS 71 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvp--sd~DE~~ 71 (129)
.-+++++|+||+..|+.+-.+.++++ -|+|...
T Consensus 164 ga~IGTSS~RR~aql~~~rPdl~v~~iRGNVdTRL 198 (351)
T PLN02691 164 GSVVGTASLRRQSQILHKYPHLKVVNFRGNVQTRL 198 (351)
T ss_pred CCEeccCcHHHHHHHHHHCCCCEEEeccCCHHHHH
Confidence 36899999999999999877776666 4666543
No 51
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=52.63 E-value=43 Score=27.57 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=41.5
Q ss_pred EecCCHHHHHHHH--hcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHhhhcCCCCCCCEEEEcc
Q 033033 42 LGSSSMARKEILA--EMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKA-------EAIRSRLQSAGQLNPTTLLITAD 112 (129)
Q Consensus 42 LASsSPrR~elL~--~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA-------~av~~~l~~~~~~~~~~iVIgAD 112 (129)
.+.++--++-|++ +-|-+|.|+. .|+.+.... ...+..|+...- .++...++. -+.+++|||
T Consensus 122 ~~~S~tv~~~l~~a~~~~~~f~V~v---~EsrP~~~G-~~~a~~L~~~gI~vtlI~Dsa~~~~m~~-----vd~VivGad 192 (301)
T TIGR00511 122 HCNSEAALSVIKTAFEQGKDIEVIA---TETRPRKQG-HITAKELRDYGIPVTLIVDSAVRYFMKE-----VDHVVVGAD 192 (301)
T ss_pred ECCcHHHHHHHHHHHHcCCcEEEEE---ecCCCcchH-HHHHHHHHHCCCCEEEEehhHHHHHHHh-----CCEEEECcc
Confidence 3433344443333 3578898884 466543322 556666665431 011111222 368999999
Q ss_pred ceEEeCCeeeccCCCC
Q 033033 113 TVCFNSSPLFAHYNLL 128 (129)
Q Consensus 113 TVV~~dg~IlgKP~~~ 128 (129)
.|.. ||-++.|-++.
T Consensus 193 ~v~~-nG~v~nkiGT~ 207 (301)
T TIGR00511 193 AITA-NGALINKIGTS 207 (301)
T ss_pred EEec-CCCEEEHHhHH
Confidence 9665 45577887653
No 52
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=51.64 E-value=31 Score=23.39 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=24.6
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCC
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAEID 68 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd~D 68 (129)
.++|....|+.|+++++++|....+...+.|
T Consensus 15 ~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~ 45 (130)
T PF00107_consen 15 AKVIATDRSEEKLELAKELGADHVIDYSDDD 45 (130)
T ss_dssp SEEEEEESSHHHHHHHHHTTESEEEETTTSS
T ss_pred CEEEEEECCHHHHHHHHhhcccccccccccc
Confidence 4789999999999999999976665555433
No 53
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=49.87 E-value=45 Score=27.54 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=41.2
Q ss_pred EecCCHHHHHHHHh--cCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHHhhhcCCCCCCCEEEEcc
Q 033033 42 LGSSSMARKEILAE--MGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAE-------AIRSRLQSAGQLNPTTLLITAD 112 (129)
Q Consensus 42 LASsSPrR~elL~~--lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~-------av~~~l~~~~~~~~~~iVIgAD 112 (129)
.+.++--.+-|++. .|-+|.|+. .|+.+.... ...+..|++..-. ++...++. -+.+++|||
T Consensus 127 ~~~S~tv~~~l~~A~~~~k~~~V~v---~EsrP~~~G-~~~a~~L~~~GI~vtlI~Dsav~~~m~~-----vd~VivGAd 197 (310)
T PRK08535 127 HCNSSAALSVIKTAHEQGKDIEVIA---TETRPRNQG-HITAKELAEYGIPVTLIVDSAVRYFMKD-----VDKVVVGAD 197 (310)
T ss_pred eCCcHHHHHHHHHHHHCCCeEEEEE---ecCCchhhH-HHHHHHHHHCCCCEEEEehhHHHHHHHh-----CCEEEECcc
Confidence 34344444444332 577888874 355443222 4556666554310 11222222 368999999
Q ss_pred ceEEeCCeeeccCCCC
Q 033033 113 TVCFNSSPLFAHYNLL 128 (129)
Q Consensus 113 TVV~~dg~IlgKP~~~ 128 (129)
.|. -||-++.|-++.
T Consensus 198 ~v~-~nG~v~nkiGT~ 212 (310)
T PRK08535 198 AIT-ANGAVINKIGTS 212 (310)
T ss_pred EEe-cCCCEEeHHhHH
Confidence 975 455588887653
No 54
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=48.01 E-value=31 Score=25.81 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=26.8
Q ss_pred CCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHH
Q 033033 45 SSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMAL 84 (129)
Q Consensus 45 sSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~l 84 (129)
+-..|.++|+++|++..++- +|++.. ...+|+++...+
T Consensus 57 ~~e~R~~~l~~l~vd~v~~~-~f~~~~-~~~s~~~Fi~~i 94 (180)
T cd02064 57 TLEEKLELLESLGVDYLLVL-PFDKEF-ASLSAEEFVEDL 94 (180)
T ss_pred CHHHHHHHHHHcCCCEEEEe-CCCHHH-HcCCHHHHHHHH
Confidence 44789999999998664443 577753 446788877654
No 55
>COG2428 Uncharacterized conserved protein [Function unknown]
Probab=46.46 E-value=32 Score=27.05 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=11.4
Q ss_pred EccceEEeCCeeecc
Q 033033 110 TADTVCFNSSPLFAH 124 (129)
Q Consensus 110 gADTVV~~dg~IlgK 124 (129)
..||+++++| |||-
T Consensus 83 s~~~~ivvGG-IlGD 96 (196)
T COG2428 83 SEDTYIVVGG-ILGD 96 (196)
T ss_pred CcccEEEECc-cccC
Confidence 7889999999 7763
No 56
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=45.79 E-value=57 Score=26.81 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=18.1
Q ss_pred CCCEEEEccceEEeCCeeeccCCCC
Q 033033 104 PTTLLITADTVCFNSSPLFAHYNLL 128 (129)
Q Consensus 104 ~~~iVIgADTVV~~dg~IlgKP~~~ 128 (129)
-+.+|+|||.|. -||-++.|-+|.
T Consensus 178 vd~VivGAD~I~-~nG~v~NKiGT~ 201 (275)
T PRK08335 178 ATLALVGADNVT-RDGYVVNKAGTY 201 (275)
T ss_pred CCEEEECccEEe-cCCCEeehhhHH
Confidence 368999999964 566688887763
No 57
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=44.19 E-value=25 Score=26.13 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=26.6
Q ss_pred ecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHH
Q 033033 43 GSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMA 83 (129)
Q Consensus 43 ASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~ 83 (129)
=++-..|.++|+.+|+++.++- +|+++. ...+|++++..
T Consensus 61 l~s~~ek~~~l~~~Gvd~~~~~-~F~~~~-~~ls~~~Fi~~ 99 (157)
T PF06574_consen 61 LTSLEEKLELLESLGVDYVIVI-PFTEEF-ANLSPEDFIEK 99 (157)
T ss_dssp SS-HHHHHHHHHHTTESEEEEE--CCCHH-CCS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCEEEEe-cchHHH-HcCCHHHHHHH
Confidence 3556789999999999875554 566653 35788888875
No 58
>PRK08238 hypothetical protein; Validated
Probab=41.09 E-value=62 Score=28.50 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCCeEEEecCCHHH--HHHHHhcCCceE-EEcCCCCC
Q 033033 36 SPIKIILGSSSMAR--KEILAEMGYEFT-VVTAEIDE 69 (129)
Q Consensus 36 ~~~~iILASsSPrR--~elL~~lgi~F~-vvpsd~DE 69 (129)
...+++++|+|+++ +.+++.+|+ |+ ++.++-.+
T Consensus 87 ~G~~v~LaTas~~~~a~~i~~~lGl-Fd~Vigsd~~~ 122 (479)
T PRK08238 87 AGRKLVLATASDERLAQAVAAHLGL-FDGVFASDGTT 122 (479)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHcCC-CCEEEeCCCcc
Confidence 34689999999998 667888998 53 44454333
No 59
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=41.08 E-value=63 Score=21.56 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=24.0
Q ss_pred CCCeEEEecCCHHHHHHHHhcCCceEEEc
Q 033033 36 SPIKIILGSSSMARKEILAEMGYEFTVVT 64 (129)
Q Consensus 36 ~~~~iILASsSPrR~elL~~lgi~F~vvp 64 (129)
+..+||....++...++|+++|++..+.|
T Consensus 88 ~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 88 PDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred CCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 34689999999999999999999877765
No 60
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=38.57 E-value=72 Score=26.38 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=36.5
Q ss_pred hcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHH-------HHHHHhhhcCCCCCCCEEEEccceEEeCCeeeccCCC
Q 033033 55 EMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAE-------AIRSRLQSAGQLNPTTLLITADTVCFNSSPLFAHYNL 127 (129)
Q Consensus 55 ~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~-------av~~~l~~~~~~~~~~iVIgADTVV~~dg~IlgKP~~ 127 (129)
+.|..|.|+. .|+.+........+..|+...-. ++...++. ..-+.+++|||.|. -||-++.|-++
T Consensus 148 ~~g~~~~V~v---~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m~~---~~vd~VlvGAd~v~-~nG~v~nk~GT 220 (303)
T TIGR00524 148 EDGKRIRVIA---CETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFMQK---GEIDAVIVGADRIA-RNGDVANKIGT 220 (303)
T ss_pred HcCCceEEEE---CCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHccc---cCCCEEEEcccEEe-cCCCEeEhhhH
Confidence 3677888874 46554333334555555543310 11111220 02468999999975 45557788765
No 61
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=37.35 E-value=28 Score=20.96 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=16.5
Q ss_pred cCCHHHHHHHHhcCCceEEEc
Q 033033 44 SSSMARKEILAEMGYEFTVVT 64 (129)
Q Consensus 44 SsSPrR~elL~~lgi~F~vvp 64 (129)
.++--|..+|+.+|+.+..+|
T Consensus 18 g~t~lk~r~L~~~G~~Vi~Ip 38 (58)
T PF08373_consen 18 GSTKLKHRHLKALGYKVISIP 38 (58)
T ss_pred hHHHHHHHHHHHCCCEEEEec
Confidence 667789999999996665554
No 62
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=37.19 E-value=1.3e+02 Score=24.56 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=26.6
Q ss_pred CCHHHHHHHHh---cCCce---EEE-cCCCCCCCCCCCCHHHHHHH
Q 033033 45 SSMARKEILAE---MGYEF---TVV-TAEIDEKSIRKDKPEDLVMA 83 (129)
Q Consensus 45 sSPrR~elL~~---lgi~F---~vv-psd~DE~~~~~~~p~e~v~~ 83 (129)
+|-|++||.+. +|++- .++ .+++.+.....++|..++..
T Consensus 82 G~iR~kEL~ra~~~lgi~~s~v~~l~~~~f~Dg~~~~Wd~~~v~~~ 127 (247)
T KOG3332|consen 82 GKIREKELHRACAVLGIPLSNVVVLDTPFFQDGPGEDWDPDAVASI 127 (247)
T ss_pred chHHHHHHHHHHHHHCCchhheEEecCCcCCCCcccccCHHHHHHH
Confidence 57899999986 88862 222 45666666667888766553
No 63
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=37.14 E-value=78 Score=27.12 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=18.0
Q ss_pred CCCEEEEccceEEeCCeeeccCCCC
Q 033033 104 PTTLLITADTVCFNSSPLFAHYNLL 128 (129)
Q Consensus 104 ~~~iVIgADTVV~~dg~IlgKP~~~ 128 (129)
-+.+|+|||.|+. ||-++.|-+|.
T Consensus 247 Vd~VivGAD~I~~-NG~v~NKiGTy 270 (363)
T PRK05772 247 VNNVMVGADRILR-DGHVFNKIGTF 270 (363)
T ss_pred CCEEEECccEEec-CCCEeehhhhH
Confidence 3689999999755 55588887763
No 64
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=35.99 E-value=1.3e+02 Score=22.12 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=25.9
Q ss_pred cccccC----CCCCCeEEEecCCHHH--------------HHHHHhcCCce-EEEcCC
Q 033033 28 RGMARS----ESSPIKIILGSSSMAR--------------KEILAEMGYEF-TVVTAE 66 (129)
Q Consensus 28 ~~~~~~----~~~~~~iILASsSPrR--------------~elL~~lgi~F-~vvpsd 66 (129)
+|+... ....++|.++|..+.. ..+|+.+|+++ .++.++
T Consensus 45 pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~ 102 (166)
T TIGR01664 45 PEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATH 102 (166)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 565433 2245789999988763 57889999986 344444
No 65
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=34.59 E-value=62 Score=19.88 Aligned_cols=30 Identities=23% Similarity=0.049 Sum_probs=21.2
Q ss_pred EEEecCCHHHHH---HHHhcCCceEEEcCCCCC
Q 033033 40 IILGSSSMARKE---ILAEMGYEFTVVTAEIDE 69 (129)
Q Consensus 40 iILASsSPrR~e---lL~~lgi~F~vvpsd~DE 69 (129)
..|.|-||.-+. .|+..|++|+.+..+.++
T Consensus 10 ~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~ 42 (72)
T cd03054 10 FGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW 42 (72)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc
Confidence 456677887764 446689999998776543
No 66
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=33.54 E-value=1.3e+02 Score=25.54 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=17.8
Q ss_pred CCCEEEEccceEEeCCeeeccCCCC
Q 033033 104 PTTLLITADTVCFNSSPLFAHYNLL 128 (129)
Q Consensus 104 ~~~iVIgADTVV~~dg~IlgKP~~~ 128 (129)
-+.+|+|||.|+. ||-++.|-+|.
T Consensus 216 Vd~VivGAd~I~a-NG~v~NKiGT~ 239 (329)
T PRK06371 216 IDLVIVGADRIAS-NGDFANKIGTY 239 (329)
T ss_pred CCEEEECccEEec-CCCEeehhhHH
Confidence 3589999999754 55577887763
No 67
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.22 E-value=32 Score=27.01 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEEecCCHH-HHHHHHh-cCCceEEEcCCCCCC
Q 033033 39 KIILGSSSMA-RKEILAE-MGYEFTVVTAEIDEK 70 (129)
Q Consensus 39 ~iILASsSPr-R~elL~~-lgi~F~vvpsd~DE~ 70 (129)
-+.|||-||| |+++++. +=+.|++-.-..|+.
T Consensus 119 gVLlgSVSP~irkr~~~e~lclT~Eip~~~s~~s 152 (198)
T COG4073 119 GVLLGSVSPRIRKRIFKEDLCLTLEIPRRGSDRS 152 (198)
T ss_pred CeEEeecCHHHHHHhcccceEEEEEecCCCChhH
Confidence 4889999998 7777774 444566554455554
No 68
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=29.94 E-value=2.2e+02 Score=23.16 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=40.0
Q ss_pred EEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHhhhcCCCCCCCEEEEccc
Q 033033 41 ILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKA-------EAIRSRLQSAGQLNPTTLLITADT 113 (129)
Q Consensus 41 ILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA-------~av~~~l~~~~~~~~~~iVIgADT 113 (129)
.++ +|.-=+++|...+-.|.|+.. |+.+.. .-...+..|+...- -++....+. -+.+++|||+
T Consensus 92 T~s-~S~~v~~~l~~~~~~~~V~v~---ESrP~~-eG~~~a~~L~~~GI~vtli~Dsa~~~~m~~-----vd~VlvGAd~ 161 (253)
T PRK06372 92 TIS-SSQVLKAFISSSEKIKSVYIL---ESRPML-EGIDMAKLLVKSGIDVVLLTDASMCEAVLN-----VDAVIVGSDS 161 (253)
T ss_pred EeC-CcHHHHHHHHhcCCCCEEEEe---cCCCch-HHHHHHHHHHHCCCCEEEEehhHHHHHHHh-----CCEEEECccE
Confidence 344 455555666555543555433 333222 12456666665431 111212222 4689999999
Q ss_pred eEEeCCeeeccCCCC
Q 033033 114 VCFNSSPLFAHYNLL 128 (129)
Q Consensus 114 VV~~dg~IlgKP~~~ 128 (129)
|.. ||-++.|-++.
T Consensus 162 V~~-nG~v~nkvGT~ 175 (253)
T PRK06372 162 VLY-DGGLIHKNGTF 175 (253)
T ss_pred Eec-CCCEeehhhHH
Confidence 655 55588877653
No 69
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=29.68 E-value=26 Score=22.73 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.1
Q ss_pred HHHHhcCCceEEEcCCCCCCC
Q 033033 51 EILAEMGYEFTVVTAEIDEKS 71 (129)
Q Consensus 51 elL~~lgi~F~vvpsd~DE~~ 71 (129)
..|.+.||.|..+|.-.||+.
T Consensus 17 ~~La~~GIRFVpiPv~~dee~ 37 (61)
T PF07131_consen 17 HSLAHIGIRFVPIPVVTDEEF 37 (61)
T ss_pred HHHHHcCceeeccccccHHHH
Confidence 468889999999999888874
No 70
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=28.40 E-value=95 Score=25.49 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEc
Q 033033 75 DKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITA 111 (129)
Q Consensus 75 ~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgA 111 (129)
..+.+++..+++.||.++..-+.... .+..+|+|+
T Consensus 16 ~~~~DIi~~I~ekKa~ai~~~le~~~--~k~~lI~G~ 50 (252)
T PF06690_consen 16 YKVIDIIKEIAEKKANAIKYWLEGEE--FKQALIFGA 50 (252)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccc--cceEEEEEE
Confidence 46889999999999999998775422 134667664
No 71
>PRK11590 hypothetical protein; Provisional
Probab=28.28 E-value=53 Score=24.86 Aligned_cols=33 Identities=6% Similarity=0.222 Sum_probs=24.1
Q ss_pred CCeEEEecCCHHH--HHHHHhcCC--ceEEEcCCCCC
Q 033033 37 PIKIILGSSSMAR--KEILAEMGY--EFTVVTAEIDE 69 (129)
Q Consensus 37 ~~~iILASsSPrR--~elL~~lgi--~F~vvpsd~DE 69 (129)
..+++++|+||+. +.+++.+|+ -..++.+.++-
T Consensus 112 G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t~l~~ 148 (211)
T PRK11590 112 DADVWLITGSPQPLVEQVYFDTPWLPRVNLIASQMQR 148 (211)
T ss_pred CCEEEEEeCCcHHHHHHHHHHccccccCceEEEEEEE
Confidence 5689999999998 678888885 24555555543
No 72
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=27.92 E-value=25 Score=27.95 Aligned_cols=80 Identities=24% Similarity=0.279 Sum_probs=39.1
Q ss_pred EEEecCCHHHHHHHH--hcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHhhhcCCCCCCCEEEE
Q 033033 40 IILGSSSMARKEILA--EMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKA-------EAIRSRLQSAGQLNPTTLLIT 110 (129)
Q Consensus 40 iILASsSPrR~elL~--~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA-------~av~~~l~~~~~~~~~~iVIg 110 (129)
+..+-+|-=.+-|+. +.|-.|+|+.. |..+. ..-.+++..|+...- .++..-++. .-+.++||
T Consensus 112 LT~~~S~~v~~~l~~a~~~~~~~~V~v~---es~P~-~eG~~~a~~L~~~gi~v~~i~d~~~~~~m~~----~vd~VliG 183 (282)
T PF01008_consen 112 LTHGYSSTVERFLLSAKKKGKKFRVIVL---ESRPY-NEGRLMAKELAEAGIPVTLIPDSAVGYVMPR----DVDKVLIG 183 (282)
T ss_dssp EEES--SHHHHHHHHHHHTTEEEEEEEE-----TTT-THHHTHHHHHHHTT-EEEEE-GGGHHHHHHC----TESEEEEE
T ss_pred EEeCCchHHHHHHHHHHHcCCeEEEEEc---cCCcc-hhhhhHHHHhhhcceeEEEEechHHHHHHHH----hCCeeEEe
Confidence 344445554555554 25677887754 33322 122456666654331 011222221 14689999
Q ss_pred ccceEEeCCeeeccCCCC
Q 033033 111 ADTVCFNSSPLFAHYNLL 128 (129)
Q Consensus 111 ADTVV~~dg~IlgKP~~~ 128 (129)
||.|.. ||-+++|-+++
T Consensus 184 ad~v~~-nG~v~nk~Gt~ 200 (282)
T PF01008_consen 184 ADAVLA-NGGVVNKVGTL 200 (282)
T ss_dssp -SEEET-TS-EEEETTHH
T ss_pred eeEEec-CCCEeehhhHH
Confidence 999654 55588887753
No 73
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=27.80 E-value=1.4e+02 Score=19.28 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=25.2
Q ss_pred ccccccccccCCCCCCeEEEecCCHHHHH---HHHhcCCceEEEcCCCCC
Q 033033 23 EFERKRGMARSESSPIKIILGSSSMARKE---ILAEMGYEFTVVTAEIDE 69 (129)
Q Consensus 23 ~~~~~~~~~~~~~~~~~iILASsSPrR~e---lL~~lgi~F~vvpsd~DE 69 (129)
+|++-.||. ++.-.+.||+.+. +|+..|++|+.+..++++
T Consensus 11 ~~~~~~~~~-------~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~ 53 (89)
T cd03055 11 EPPPVPGII-------RLYSMRFCPYAQRARLVLAAKNIPHEVININLKD 53 (89)
T ss_pred CCCCCCCcE-------EEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCC
Confidence 455544543 5665666775543 456699999988776643
No 74
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=27.65 E-value=28 Score=21.82 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=25.5
Q ss_pred ecCCHHHHHHHHhcCCceEEEcC-CCCCCC-CCCCCHHHHHHHH
Q 033033 43 GSSSMARKEILAEMGYEFTVVTA-EIDEKS-IRKDKPEDLVMAL 84 (129)
Q Consensus 43 ASsSPrR~elL~~lgi~F~vvps-d~DE~~-~~~~~p~e~v~~l 84 (129)
+..-|+...+|+++||+|=+-.. ...|-. ..+.+++++...|
T Consensus 9 v~~~p~~a~vf~~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~L 52 (56)
T PF04405_consen 9 VAEDPRAARVFRKYGIDFCCGGNRSLEEACEEKGLDPEEVLEEL 52 (56)
T ss_pred HHHChHHHHHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHH
Confidence 45679999999999999966542 222221 1234555554443
No 75
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=27.39 E-value=67 Score=19.92 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=15.9
Q ss_pred HHHHHHHHhcCCceEEEcCCCCCC
Q 033033 47 MARKEILAEMGYEFTVVTAEIDEK 70 (129)
Q Consensus 47 PrR~elL~~lgi~F~vvpsd~DE~ 70 (129)
.+=+++|++.|++|+.+ +++++
T Consensus 15 ~ka~~~L~~~gi~~~~~--di~~~ 36 (73)
T cd03027 15 TAVRLFLREKGLPYVEI--NIDIF 36 (73)
T ss_pred HHHHHHHHHCCCceEEE--ECCCC
Confidence 34467899999999988 44443
No 76
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=27.17 E-value=2.5e+02 Score=20.46 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCceEEEcCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHH
Q 033033 47 MARKEILAEMGYEFTVVTAEIDEKSI-RKDKPEDLVMALAEAKAEAIRSR 95 (129)
Q Consensus 47 PrR~elL~~lgi~F~vvpsd~DE~~~-~~~~p~e~v~~lA~~KA~av~~~ 95 (129)
..-+++.+.+|+++.+...+..+... ...+..+.+.++=..+...++.+
T Consensus 48 ~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~ 97 (189)
T TIGR02432 48 EFVQQFCKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKK 97 (189)
T ss_pred HHHHHHHHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 34456778899999888876655321 22345555444433334444443
No 77
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=27.16 E-value=1.5e+02 Score=19.45 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=21.8
Q ss_pred CCeEEEecCC-------H---HHHHHHHhcCCceEEEcC
Q 033033 37 PIKIILGSSS-------M---ARKEILAEMGYEFTVVTA 65 (129)
Q Consensus 37 ~~~iILASsS-------P---rR~elL~~lgi~F~vvps 65 (129)
+.++|+-|.| | +=+++|+..|++|+.+.-
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv 45 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDI 45 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEc
Confidence 4577777764 2 556799999999998853
No 78
>PRK07143 hypothetical protein; Provisional
Probab=26.57 E-value=90 Score=25.60 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=27.7
Q ss_pred CCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHH
Q 033033 45 SSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMAL 84 (129)
Q Consensus 45 sSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~l 84 (129)
.-..|.++|+++|+++.++ -+|+++ ....+|++++..+
T Consensus 66 ~~~er~~~l~~~Gvd~~~~-~~F~~~-~a~ls~e~Fi~~l 103 (279)
T PRK07143 66 DLNSRLQTLANLGFKNIIL-LDFNEE-LQNLSGNDFIEKL 103 (279)
T ss_pred CHHHHHHHHHHCCCCEEEE-eCCCHH-HhCCCHHHHHHHH
Confidence 3357999999999976544 347766 3567899998865
No 79
>COG1158 Rho Transcription termination factor [Transcription]
Probab=25.77 E-value=81 Score=27.54 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=28.3
Q ss_pred CceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccce
Q 033033 58 YEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTV 114 (129)
Q Consensus 58 i~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTV 114 (129)
++=+|++|.|||....+.. |..+...||....++ ..++||--|+|
T Consensus 225 V~geViaSTFDepp~~Hvq----VAE~viEkAKRlVE~--------~kDVVILLDSI 269 (422)
T COG1158 225 VKGEVVASTFDEPPSRHVQ----VAEMVIEKAKRLVEH--------GKDVVILLDSI 269 (422)
T ss_pred hcceEEeecCCCcchhhHH----HHHHHHHHHHHHHHc--------CCcEEEEehhH
Confidence 3468888888887654433 344455677666553 24677777765
No 80
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=25.38 E-value=1.6e+02 Score=22.41 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=20.4
Q ss_pred eEEEecCC--------HHHHHHHHh-cCCceEEEc
Q 033033 39 KIILGSSS--------MARKEILAE-MGYEFTVVT 64 (129)
Q Consensus 39 ~iILASsS--------PrR~elL~~-lgi~F~vvp 64 (129)
+|++-|.| ..|.+.+++ +|+++....
T Consensus 79 ~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 79 RVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred eEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeC
Confidence 68998988 678888876 999875554
No 81
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=25.29 E-value=1e+02 Score=25.50 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=27.5
Q ss_pred CHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHH
Q 033033 46 SMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMA 83 (129)
Q Consensus 46 SPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~ 83 (129)
-..|.++|+.+|+++.++ -+|+|+. ...+|++++..
T Consensus 72 ~eeR~~~l~~~gVD~~~~-~~F~~~~-~~ls~e~Fi~~ 107 (305)
T PRK05627 72 LRDKAELLAELGVDYVLV-LPFDEEF-AKLSAEEFIED 107 (305)
T ss_pred HHHHHHHHHHcCCCEEEE-ecCCHHH-hcCCHHHHHHH
Confidence 377999999999887766 5577763 45788888775
No 82
>PRK10824 glutaredoxin-4; Provisional
Probab=24.99 E-value=1.2e+02 Score=21.63 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCeEEEecCC----------HHHHHHHHhcCCceEEEcCCCCC
Q 033033 37 PIKIILGSSS----------MARKEILAEMGYEFTVVTAEIDE 69 (129)
Q Consensus 37 ~~~iILASsS----------PrR~elL~~lgi~F~vvpsd~DE 69 (129)
+.+|++-|.| -+=+++|+.+|++|.++ ++++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~i--di~~ 54 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYV--DILQ 54 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEE--EecC
Confidence 3567777775 45678999999999876 4444
No 83
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=23.26 E-value=77 Score=20.18 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=20.4
Q ss_pred CCeEEEecCC-----HHHHHHHHhcCCceEEEcC
Q 033033 37 PIKIILGSSS-----MARKEILAEMGYEFTVVTA 65 (129)
Q Consensus 37 ~~~iILASsS-----PrR~elL~~lgi~F~vvps 65 (129)
+.+|+|=|.+ .+=+++|+..|++|+.+.-
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi 40 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPL 40 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEEC
Confidence 4456665543 4567888999999998754
No 84
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=22.72 E-value=56 Score=27.20 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=13.9
Q ss_pred CEEEEccceEEeCCeee
Q 033033 106 TLLITADTVCFNSSPLF 122 (129)
Q Consensus 106 ~iVIgADTVV~~dg~Il 122 (129)
...+++|-||..+|+||
T Consensus 201 ~~~vtv~avv~~~g~VL 217 (340)
T PRK05379 201 PTFVTVDAVVVQSGHVL 217 (340)
T ss_pred CcceEEEEEEEECCEEE
Confidence 35689999999999875
No 85
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=22.65 E-value=51 Score=19.51 Aligned_cols=11 Identities=45% Similarity=0.549 Sum_probs=8.7
Q ss_pred CHHHHHHHHhc
Q 033033 46 SMARKEILAEM 56 (129)
Q Consensus 46 SPrR~elL~~l 56 (129)
..||++||++.
T Consensus 16 ~~RRk~IL~k~ 26 (39)
T PF08557_consen 16 ASRRKEILKKH 26 (39)
T ss_pred HHHHHHHHHhC
Confidence 46999999864
No 86
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=22.30 E-value=1.1e+02 Score=18.27 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=16.9
Q ss_pred CHHH-HHHHHhcCCceEEEcCCCCC
Q 033033 46 SMAR-KEILAEMGYEFTVVTAEIDE 69 (129)
Q Consensus 46 SPrR-~elL~~lgi~F~vvpsd~DE 69 (129)
..+| +-+|+..|++|+.+..++.+
T Consensus 11 ~~~~~~~~L~~~~l~~~~~~v~~~~ 35 (74)
T cd03051 11 NPRRVRIFLAEKGIDVPLVTVDLAA 35 (74)
T ss_pred chHHHHHHHHHcCCCceEEEeeccc
Confidence 3444 55577899999988776644
No 87
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=22.20 E-value=1.5e+02 Score=19.96 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=21.2
Q ss_pred CCeEEEecC-------CH---HHHHHHHhcCCceEEEc
Q 033033 37 PIKIILGSS-------SM---ARKEILAEMGYEFTVVT 64 (129)
Q Consensus 37 ~~~iILASs-------SP---rR~elL~~lgi~F~vvp 64 (129)
+.+||+-|. .| +=+++|+++|++|+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~d 48 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVN 48 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEE
Confidence 356777765 34 67899999999998763
No 88
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=22.18 E-value=1.2e+02 Score=18.90 Aligned_cols=25 Identities=16% Similarity=0.021 Sum_probs=16.7
Q ss_pred ecCCHHHHH---HHHhcCCceEEEcCCC
Q 033033 43 GSSSMARKE---ILAEMGYEFTVVTAEI 67 (129)
Q Consensus 43 ASsSPrR~e---lL~~lgi~F~vvpsd~ 67 (129)
.|-||.... +|+..|++|+....+.
T Consensus 14 ~~~sp~~~~v~~~L~~~gi~~~~~~~~~ 41 (75)
T cd03080 14 PSLSPFCLKVETFLRMAGIPYENKFGGL 41 (75)
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEeecCc
Confidence 466775543 4577899999876543
No 89
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=21.88 E-value=2.6e+02 Score=20.53 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=17.4
Q ss_pred HHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHH
Q 033033 50 KEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMA 83 (129)
Q Consensus 50 ~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~ 83 (129)
+++.+++|+++.+...+.+.. .....+..+..
T Consensus 51 ~~~~~~~~i~~~~~~~~~~~~--~~~~~e~~aR~ 82 (182)
T PF01171_consen 51 EEICEQLGIPLYIVRIDEDRK--KGSNIEECARE 82 (182)
T ss_dssp HHHHHHTT-EEEEEE--CHCC--TTSTCHHHHHH
T ss_pred HHHHHhcCCceEEEEeeeeec--ccCCHHHHHHH
Confidence 456778999999988876222 23344444443
No 90
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=21.80 E-value=4e+02 Score=23.81 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=22.4
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEcC
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVTA 65 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvps 65 (129)
.++.-..+|.|++..+++|.+|..+.+
T Consensus 190 ~V~a~D~~~~rle~aeslGA~~v~i~~ 216 (509)
T PRK09424 190 IVRAFDTRPEVAEQVESMGAEFLELDF 216 (509)
T ss_pred EEEEEeCCHHHHHHHHHcCCeEEEecc
Confidence 577778899999999999999866544
No 91
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=21.35 E-value=1.4e+02 Score=23.89 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=21.7
Q ss_pred eEEEecCCHHHHHHHHhcCCceEEEc
Q 033033 39 KIILGSSSMARKEILAEMGYEFTVVT 64 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F~vvp 64 (129)
++|....|+.|.++++++|.+..+..
T Consensus 196 ~Vi~~~~~~~~~~~a~~lGa~~vi~~ 221 (343)
T PRK09880 196 EIVCADVSPRSLSLAREMGADKLVNP 221 (343)
T ss_pred EEEEEeCCHHHHHHHHHcCCcEEecC
Confidence 68888899999999999998765543
No 92
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=20.35 E-value=52 Score=28.17 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=17.9
Q ss_pred CCCEEEEccceEEeCCeeeccCCCC
Q 033033 104 PTTLLITADTVCFNSSPLFAHYNLL 128 (129)
Q Consensus 104 ~~~iVIgADTVV~~dg~IlgKP~~~ 128 (129)
-+.+|+|||.|+. ||-++.|-+|.
T Consensus 239 Vd~VivGAd~I~~-nG~v~NKiGTy 262 (356)
T PRK08334 239 VDAIIVGADRIVA-NGDFANKIGTY 262 (356)
T ss_pred CCEEEECccEEec-CCCEeehhhHH
Confidence 3589999999755 55588887763
No 93
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=20.25 E-value=59 Score=19.35 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCceEEEcCCCCC
Q 033033 48 ARKEILAEMGYEFTVVTAEIDE 69 (129)
Q Consensus 48 rR~elL~~lgi~F~vvpsd~DE 69 (129)
+=+++|+..|++|+.+.-+-|+
T Consensus 14 ~~~~~L~~~~i~y~~~dv~~~~ 35 (60)
T PF00462_consen 14 KAKEFLDEKGIPYEEVDVDEDE 35 (60)
T ss_dssp HHHHHHHHTTBEEEEEEGGGSH
T ss_pred HHHHHHHHcCCeeeEcccccch
Confidence 3467899999999888765544
No 94
>PRK10329 glutaredoxin-like protein; Provisional
Probab=20.11 E-value=1.1e+02 Score=19.88 Aligned_cols=19 Identities=21% Similarity=0.625 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCceEEEcCC
Q 033033 48 ARKEILAEMGYEFTVVTAE 66 (129)
Q Consensus 48 rR~elL~~lgi~F~vvpsd 66 (129)
+=+++|++.|++|+.+..+
T Consensus 16 ~ak~~L~~~gI~~~~idi~ 34 (81)
T PRK10329 16 ATKRAMESRGFDFEMINVD 34 (81)
T ss_pred HHHHHHHHCCCceEEEECC
Confidence 4467889999999988443
No 95
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=20.03 E-value=1e+02 Score=24.75 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=17.2
Q ss_pred EEEecCCHHHHHHHHhcCCceEEEcCCCCCC
Q 033033 40 IILGSSSMARKEILAEMGYEFTVVTAEIDEK 70 (129)
Q Consensus 40 iILASsSPrR~elL~~lgi~F~vvpsd~DE~ 70 (129)
+|--|-|++.+++|+..|++|..+.+..|..
T Consensus 187 lvA~~i~~~a~~ll~~~glef~~ldp~~~~~ 217 (228)
T PF01939_consen 187 LVAPSITPQARELLEDRGLEFVELDPPYDAM 217 (228)
T ss_dssp EEES-B-HHHHHHHHHHT-EEEE--------
T ss_pred EECCCCCHHHHHHHHHcCCEEEEecchHHHh
Confidence 4455678999999999999998888766663
Done!