Query 033033
Match_columns 129
No_of_seqs 152 out of 1057
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ex2_A Protein MAF; structural 100.0 1.2E-29 4.2E-34 195.1 11.2 83 38-127 3-85 (189)
2 2amh_A Septum formation protei 100.0 2.8E-29 9.6E-34 195.5 10.6 91 37-127 8-104 (207)
3 2p5x_A ASMTL, N-acetylserotoni 100.0 3.2E-29 1.1E-33 197.8 11.1 90 37-127 3-94 (230)
4 1vp2_A Putative xanthosine tri 92.2 0.9 3.1E-05 34.8 8.7 70 34-118 12-86 (208)
5 1b78_A Pyrophosphatase; struct 90.5 1.1 3.9E-05 33.8 7.6 66 38-118 9-79 (193)
6 2car_A Inosine triphosphate py 90.4 1.4 4.9E-05 33.3 8.1 66 38-118 10-80 (196)
7 3tqu_A Non-canonical purine NT 87.5 4.3 0.00015 30.8 9.0 69 38-118 5-78 (203)
8 1v7r_A Hypothetical protein PH 86.3 2.3 7.9E-05 31.9 6.8 66 39-118 2-71 (186)
9 1k7k_A Hypothetical protein YG 83.1 6 0.00021 30.4 8.0 68 39-118 25-97 (221)
10 1gtk_A Porphobilinogen deamina 55.7 8.3 0.00028 31.2 3.1 26 40-65 123-148 (313)
11 3ecr_A Porphobilinogen deamina 51.7 10 0.00035 31.4 3.1 26 40-65 144-169 (364)
12 1u6t_A SH3 domain-binding glut 45.7 16 0.00053 25.4 2.9 31 39-69 3-42 (121)
13 3op1_A Macrolide-efflux protei 41.3 20 0.00068 28.7 3.2 39 44-84 79-117 (308)
14 4a2c_A Galactitol-1-phosphate 39.9 38 0.0013 25.8 4.6 29 38-66 186-214 (346)
15 4g9b_A Beta-PGM, beta-phosphog 35.3 46 0.0016 23.9 4.3 29 37-65 111-141 (243)
16 2kta_A Putative helicase; PSI, 34.9 18 0.00063 23.0 1.7 18 44-61 49-66 (74)
17 4b4k_A N5-carboxyaminoimidazol 32.4 30 0.001 25.9 2.8 38 39-82 26-68 (181)
18 4glt_A Glutathione S-transfera 31.1 92 0.0031 22.1 5.3 33 37-69 22-57 (225)
19 3ik5_A Protein NEF; protein-pr 27.5 44 0.0015 24.1 2.8 27 45-71 42-94 (143)
20 1t1v_A SH3BGRL3, SH3 domain-bi 27.2 59 0.002 20.1 3.2 17 50-66 25-41 (93)
21 3hpd_A Hydroxyethylthiazole ki 23.8 37 0.0013 26.5 2.0 32 38-69 87-123 (265)
22 3nx4_A Putative oxidoreductase 21.9 57 0.002 24.6 2.8 32 38-69 172-203 (324)
23 3msz_A Glutaredoxin 1; alpha-b 21.4 43 0.0015 19.8 1.6 22 48-69 19-40 (89)
24 3s2e_A Zinc-containing alcohol 20.9 1.3E+02 0.0044 22.9 4.6 27 38-64 191-217 (340)
25 3ktb_A Arsenical resistance op 20.4 37 0.0013 23.2 1.2 22 39-60 84-105 (106)
No 1
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=99.96 E-value=1.2e-29 Score=195.15 Aligned_cols=83 Identities=29% Similarity=0.358 Sum_probs=77.5
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccceEEe
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTVCFN 117 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTVV~~ 117 (129)
.+|||||+||||++||+++|++|++++++|||+..++++|.+||.++|..||++++.++. +.+||||||||++
T Consensus 3 ~~lILAS~SPrR~eLL~~~gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~av~~~~~-------~~~VigaDTvV~~ 75 (189)
T 1ex2_A 3 KPLILASQSPRRKELLDLLQLPYSIIVSEVEEKLNRNFSPEENVQWLAKQKAKAVADLHP-------HAIVIGADTMVCL 75 (189)
T ss_dssp CCEEECCCCHHHHHHHHTTCCCCEECCCCCCCCCCTTSCHHHHHHHHHHHHHHHHHHHCT-------TSEEEEEEEEEEE
T ss_pred CCEEEECCCHHHHHHHHhCCCCeEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcC-------CCeEEEeCeEEEE
Confidence 369999999999999999999999999999999988999999999999999999998763 2489999999999
Q ss_pred CCeeeccCCC
Q 033033 118 SSPLFAHYNL 127 (129)
Q Consensus 118 dg~IlgKP~~ 127 (129)
||+|||||..
T Consensus 76 ~g~ilgKP~~ 85 (189)
T 1ex2_A 76 DGECLGKPQD 85 (189)
T ss_dssp TTEEECCCSS
T ss_pred CCEEcCCCCC
Confidence 9999999975
No 2
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=99.96 E-value=2.8e-29 Score=195.48 Aligned_cols=91 Identities=25% Similarity=0.364 Sum_probs=79.5
Q ss_pred CCeE-EEecCCHHHHHHHHhc----CCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCCEEEE
Q 033033 37 PIKI-ILGSSSMARKEILAEM----GYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQ-LNPTTLLIT 110 (129)
Q Consensus 37 ~~~i-ILASsSPrR~elL~~l----gi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~-~~~~~iVIg 110 (129)
.++| ||||+||||++||+++ |++|++++++|||+..++++|.+||.+||..||+++++++..... ...+.+|||
T Consensus 8 ~~~l~ILAS~SPrR~eLL~~~~~~~gi~f~v~~~~iDE~~~~~~~p~~~v~~lA~~KA~av~~~~~~~~~~~~~~~~VIg 87 (207)
T 2amh_A 8 EIRTMIIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKAYRAADPFELTESIARAKMKAVLEKARQHSPPISGPAIALT 87 (207)
T ss_dssp CCCEEEECCCCHHHHHHHHHHHTTTCSEEEECCCCCCGGGCCCSSHHHHHHHHHHHHHHHHHHHHHTC------CEEEEE
T ss_pred CCcEEEEccCCHHHHHHHHhhhhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCCCEEEE
Confidence 4689 9999999999999999 999999999999999889999999999999999999987742100 001469999
Q ss_pred ccceEEeCCeeeccCCC
Q 033033 111 ADTVCFNSSPLFAHYNL 127 (129)
Q Consensus 111 ADTVV~~dg~IlgKP~~ 127 (129)
|||||++||+|||||..
T Consensus 88 aDTvV~~~g~IlgKP~~ 104 (207)
T 2amh_A 88 FDQVVVKGDEVREKPLS 104 (207)
T ss_dssp EEEEEEETTEEECSCSS
T ss_pred ECeEEEECCEEcCCCCC
Confidence 99999999999999975
No 3
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei; structural genomics, structural genomics consortium, unknown function; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.2e-29 Score=197.77 Aligned_cols=90 Identities=28% Similarity=0.368 Sum_probs=79.5
Q ss_pred CCeEEEecCCHHHHHHHHhcCCceEEEcCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccce
Q 033033 37 PIKIILGSSSMARKEILAEMGYEFTVVTAEIDEKSIRKD--KPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTV 114 (129)
Q Consensus 37 ~~~iILASsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~--~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTV 114 (129)
.++|||||+||||++||+++|++|++++++|||+..++. +|.+||++||..||+++++++.... ...+.+|||||||
T Consensus 3 ~~~lILAS~SPrR~eLL~~~Gi~f~v~~~~iDE~~~~~~~~~p~~~v~~lA~~KA~av~~~~~~~~-~~~~~~VIgaDTv 81 (230)
T 2p5x_A 3 HKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVANRLYQKD-LRAPDVVIGADTI 81 (230)
T ss_dssp TSCEEECCCCHHHHHHHHHTTCCCEECCCCCCCCCCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSEEEEEEEE
T ss_pred CCcEEEeCCCHHHHHHHHHCCCCeEEeCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHhhhhc-cCCCCEEEEeCeE
Confidence 467999999999999999999999999999999988877 8999999999999999998764210 0134699999999
Q ss_pred EEeCCeeeccCCC
Q 033033 115 CFNSSPLFAHYNL 127 (129)
Q Consensus 115 V~~dg~IlgKP~~ 127 (129)
|++||+|||||..
T Consensus 82 V~~dg~IlgKP~d 94 (230)
T 2p5x_A 82 VTVGGLILEKPVD 94 (230)
T ss_dssp EEETTEEECCCSS
T ss_pred EEECCEEecCCCC
Confidence 9999999999975
No 4
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/ protein homolog; structural genomics, joint center for structural genomics, JCSG; 1.78A {Thermotoga maritima} SCOP: c.51.4.1
Probab=92.23 E-value=0.9 Score=34.83 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=47.4
Q ss_pred CCCCCeEEEecCCHHHHHHHHh-cCCceEEEcCC----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEE
Q 033033 34 ESSPIKIILGSSSMARKEILAE-MGYEFTVVTAE----IDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLL 108 (129)
Q Consensus 34 ~~~~~~iILASsSPrR~elL~~-lgi~F~vvpsd----~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iV 108 (129)
+|+.++|||||+-+--.+-++. ++-.+++++.+ ++|+ +.+ -...|..||+.+++... .++
T Consensus 12 ~~~~~~iv~aT~N~~Kl~E~~~iL~~~iev~~~~~~~ei~E~---g~T----f~eNA~~KA~~aa~~~g--------~pv 76 (208)
T 1vp2_A 12 HMKKLTVYLATTNPHKVEEIKMIAPEWMEILPSPEKIEVVED---GET----FLENSVKKAVVYGKKLK--------HPV 76 (208)
T ss_dssp ---CEEEEESCCCHHHHHHHHTTCCTTEEEEECSSCCCCCCC---CSS----HHHHHHHHHHHHHHHHC--------SCE
T ss_pred hcccCeEEEEcCCHHHHHHHHHHhhcCcEEEecccCCCCCCC---CCC----HHHHHHHHHHHHHHHHC--------CCE
Confidence 4567799999999998887777 43117777642 3332 123 34578899999988753 569
Q ss_pred EEccceEEeC
Q 033033 109 ITADTVCFNS 118 (129)
Q Consensus 109 IgADTVV~~d 118 (129)
|+=||=.++|
T Consensus 77 laDDSGL~Vd 86 (208)
T 1vp2_A 77 MADDSGLVIY 86 (208)
T ss_dssp EEEEEEEEEG
T ss_pred EeeccEEEEe
Confidence 9999987654
No 5
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A {Methanocaldococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A*
Probab=90.47 E-value=1.1 Score=33.81 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=44.1
Q ss_pred CeEEEecCCHHHHHHHHh----cC-CceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcc
Q 033033 38 IKIILGSSSMARKEILAE----MG-YEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITAD 112 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~----lg-i~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgAD 112 (129)
++||+||+-+.-.+-++. +| +++...+-+++|.. .+ -...|..||+.+++... .++|+=|
T Consensus 9 m~iv~aT~N~~K~~E~~~iL~~~~~i~v~~~~~~~~E~~---~t----f~enA~~KA~~a~~~~g--------~p~laDD 73 (193)
T 1b78_A 9 MKIYFATGNPNKIKEANIILKDLKDVEIEQIKISYPEIQ---GT----LEEVAEFGAKWVYNILK--------KPVIVED 73 (193)
T ss_dssp -CEEEECSCHHHHHHHHHHTTTCTTCCEEEECCCCCCBS---SC----HHHHHHHHHHHHHHHHC--------SCEEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHhcccCCeEEEECCCCCCCCC---CC----HHHHHHHHHHHHHHHHC--------CCEEEEc
Confidence 479999999988665554 33 44444433444443 22 35678999999988763 4699999
Q ss_pred ceEEeC
Q 033033 113 TVCFNS 118 (129)
Q Consensus 113 TVV~~d 118 (129)
|=..+|
T Consensus 74 SGL~vd 79 (193)
T 1b78_A 74 SGFFVE 79 (193)
T ss_dssp EEEEEG
T ss_pred CEEEEh
Confidence 987765
No 6
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine triphosphate pyrophosphohydrolase, inosine triphosphatase deficiency, ITP, IMP; 1.09A {Homo sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
Probab=90.37 E-value=1.4 Score=33.30 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=45.3
Q ss_pred CeEEEecCCHHHHHHHHh-cC--CceEEEc--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcc
Q 033033 38 IKIILGSSSMARKEILAE-MG--YEFTVVT--AEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITAD 112 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~-lg--i~F~vvp--sd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgAD 112 (129)
.+|||||+-+.-.+-++. ++ +.+++++ .+++|.. .+ -...|..||+.+++... ..+|+=|
T Consensus 10 ~~iv~aT~N~~K~~E~~~iL~~~~~i~v~~~~~~~~E~~---~t----f~enA~~KA~~a~~~~g--------~pvlaDD 74 (196)
T 2car_A 10 KKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDLPEYQ---GE----PDEISIQKCQEAVRQVQ--------GPVLVED 74 (196)
T ss_dssp CEEEEECSCHHHHHHHHHHHCTTCCSEEEEECCCCCCBC---SC----HHHHHHHHHHHHHHHHS--------SCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHcCCCCCcEEEECCCCCCCCC---CC----HHHHHHHHHHHHHHHHC--------CCEEeec
Confidence 479999999987665555 33 2355554 4555654 23 34578999999988763 4599999
Q ss_pred ceEEeC
Q 033033 113 TVCFNS 118 (129)
Q Consensus 113 TVV~~d 118 (129)
|=.++|
T Consensus 75 SGL~vd 80 (196)
T 2car_A 75 TCLCFN 80 (196)
T ss_dssp EEEEEG
T ss_pred cEEEEe
Confidence 987755
No 7
>3tqu_A Non-canonical purine NTP pyrophosphatase; HAM1 protein, hydrolase; HET: MSE; 1.90A {Coxiella burnetii}
Probab=87.49 E-value=4.3 Score=30.79 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=45.8
Q ss_pred CeEEEecCCHHHHHHHHh-cC-CceEEEcC-CCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEcc
Q 033033 38 IKIILGSSSMARKEILAE-MG-YEFTVVTA-EID--EKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITAD 112 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~-lg-i~F~vvps-d~D--E~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgAD 112 (129)
++|||||+-+.-.+-++. |+ +.+++++. +++ |-...+.+. ...|..||+.+++... .++|+=|
T Consensus 5 ~~iv~aT~N~~K~~E~~~iL~~~~i~v~~~~~~~~~ei~E~g~tf----~eNA~~KA~~~~~~~g--------~pvlaDD 72 (203)
T 3tqu_A 5 LEIVLASQNSSKLAEMQELLRDLEIKFIPQTEFSVPDIEETGSTF----VENAIIKARHAAKQTG--------LPALADD 72 (203)
T ss_dssp EEEEECCCCHHHHHHHHHHTTTSSEEEEEGGGGTCCCCCCCCSSH----HHHHHHHHHHHHHHHS--------SCEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHhhhcCcEEEEhhhcCCCCCCCCCCCH----HHHHHHHHHHHHHHHC--------cCEEEec
Confidence 379999999987665554 43 35677643 333 221122333 3478899999988763 5699999
Q ss_pred ceEEeC
Q 033033 113 TVCFNS 118 (129)
Q Consensus 113 TVV~~d 118 (129)
|=.++|
T Consensus 73 SGL~vd 78 (203)
T 3tqu_A 73 SGLTIA 78 (203)
T ss_dssp EEEEEG
T ss_pred cEEEEh
Confidence 988765
No 8
>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken structural genomics/prote initiative, RSGI, hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii} SCOP: c.51.4.1 PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A 2zti_A 2e5x_A*
Probab=86.34 E-value=2.3 Score=31.86 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=42.4
Q ss_pred eEEEecCCHHHHH----HHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccce
Q 033033 39 KIILGSSSMARKE----ILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADTV 114 (129)
Q Consensus 39 ~iILASsSPrR~e----lL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADTV 114 (129)
+||+||+-+.-.+ ||..+|++ +++.++|-....+.+. ...|..||+.+++.. +..+|+=||=
T Consensus 2 kiv~aT~N~~K~~E~~~il~~~~i~--v~~~~~~~~e~~g~tf----~enA~~KA~~~~~~~--------g~p~laDDSG 67 (186)
T 1v7r_A 2 KIFFITSNPGKVREVANFLGTFGIE--IVQLKHEYPEIQAEKL----EDVVDFGISWLKGKV--------PEPFMIEDSG 67 (186)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCE--EEEECCCCCCCCCSSH----HHHHHHHHHHHTTTS--------CSSEEEEEEE
T ss_pred eEEEEcCCHHHHHHHHHHhhhcCcE--EEECCCCCCCCCCCCH----HHHHHHHHHHHHHHH--------CCCeEecCcE
Confidence 6999999988764 44445554 4443443221223333 457889999997654 2569999998
Q ss_pred EEeC
Q 033033 115 CFNS 118 (129)
Q Consensus 115 V~~d 118 (129)
..+|
T Consensus 68 L~vd 71 (186)
T 1v7r_A 68 LFIE 71 (186)
T ss_dssp EEEG
T ss_pred EEEe
Confidence 7765
No 9
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered Se-Met, structural genomics, putative ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1 PDB: 2q16_A* 2pyu_A*
Probab=83.10 E-value=6 Score=30.44 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=44.4
Q ss_pred eEEEecCCHHHHHHHHh-cC-CceEEEcC-CCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEccc
Q 033033 39 KIILGSSSMARKEILAE-MG-YEFTVVTA-EIDEKSIR--KDKPEDLVMALAEAKAEAIRSRLQSAGQLNPTTLLITADT 113 (129)
Q Consensus 39 ~iILASsSPrR~elL~~-lg-i~F~vvps-d~DE~~~~--~~~p~e~v~~lA~~KA~av~~~l~~~~~~~~~~iVIgADT 113 (129)
+|||||+-+--.+-++. |+ +.+++++. +++-..+. +.+ -...|..||+.+++... .++|+=||
T Consensus 25 ~iv~AT~N~~Kl~E~~~iL~~~~iev~~~~d~~~~ei~E~g~T----f~eNA~~KA~~aa~~~g--------~pvlaDDS 92 (221)
T 1k7k_A 25 KVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLT----FIENAILKARHAAKVTA--------LPAIADDS 92 (221)
T ss_dssp EEEESCCCHHHHHHHHHHHGGGTEEEEETTTTTCCCCCCCCSS----HHHHHHHHHHHHHHHHS--------SCEEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHhhhcCeEEEEhhhcCCCCcccCCCC----HHHHHHHHHHHHHHHHC--------CCEEeecc
Confidence 69999999987655544 32 24666654 34321111 223 34578899999988763 46999999
Q ss_pred eEEeC
Q 033033 114 VCFNS 118 (129)
Q Consensus 114 VV~~d 118 (129)
=.++|
T Consensus 93 GL~Vd 97 (221)
T 1k7k_A 93 GLAVD 97 (221)
T ss_dssp EEEEG
T ss_pred EEEEe
Confidence 88765
No 10
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=55.70 E-value=8.3 Score=31.22 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.1
Q ss_pred EEEecCCHHHHHHHHhcCCceEEEcC
Q 033033 40 IILGSSSMARKEILAEMGYEFTVVTA 65 (129)
Q Consensus 40 iILASsSPrR~elL~~lgi~F~vvps 65 (129)
-+.+++|+||+..|..+..++++++-
T Consensus 123 a~VGTSSlRR~aQL~~~rPdl~i~~l 148 (313)
T 1gtk_A 123 SIVGTSSLRRQCQLAERRPDLIIRSL 148 (313)
T ss_dssp CEEECCCHHHHHHHHHHCTTSEEECC
T ss_pred CEEecCCHHHHHHHHHHCCCCEEEeC
Confidence 58999999999999998777777763
No 11
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=51.66 E-value=10 Score=31.35 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.2
Q ss_pred EEEecCCHHHHHHHHhcCCceEEEcC
Q 033033 40 IILGSSSMARKEILAEMGYEFTVVTA 65 (129)
Q Consensus 40 iILASsSPrR~elL~~lgi~F~vvps 65 (129)
-+.+++|+||+..|+.+..++++++-
T Consensus 144 a~VGTSSlRR~aQL~~~rPdL~i~~l 169 (364)
T 3ecr_A 144 SVVGTSSLRRAAQLQRKFPHLEFRSI 169 (364)
T ss_dssp CEEECCCHHHHHHHHHHCTTSEEECC
T ss_pred CEEeCCcHHHHHHHHHHCCCCEEEEC
Confidence 57899999999999998877777764
No 12
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=45.71 E-value=16 Score=25.39 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=24.1
Q ss_pred eEEEecCCHHH---------HHHHHhcCCceEEEcCCCCC
Q 033033 39 KIILGSSSMAR---------KEILAEMGYEFTVVTAEIDE 69 (129)
Q Consensus 39 ~iILASsSPrR---------~elL~~lgi~F~vvpsd~DE 69 (129)
.|...|.+|.+ +.||+..||+|+.+..+-|+
T Consensus 3 ~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~ 42 (121)
T 1u6t_A 3 RVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANE 42 (121)
T ss_dssp EEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCH
T ss_pred EEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCH
Confidence 46778888887 68999999999887665443
No 13
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=41.27 E-value=20 Score=28.66 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=28.4
Q ss_pred cCCHHHHHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHHHH
Q 033033 44 SSSMARKEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVMAL 84 (129)
Q Consensus 44 SsSPrR~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~~l 84 (129)
+.-..|.++|+++|++..++ -+|++. ....+|++++..+
T Consensus 79 t~~~eK~~ll~~lGVD~v~~-~~F~~~-~a~ls~e~Fv~~l 117 (308)
T 3op1_A 79 LNPAERERKLKREGVEELYL-LDFSSQ-FASLTAQEFFATY 117 (308)
T ss_dssp SCHHHHHHHHHHHTCCEEEE-ECCCHH-HHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEE-ecCCHH-HHcCCHHHHHHHH
Confidence 45578999999999886554 346665 3457899888754
No 14
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=39.89 E-value=38 Score=25.84 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=24.2
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCC
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAE 66 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd 66 (129)
..+|..+.|+.|.++++++|.+..+...+
T Consensus 186 ~~vi~~~~~~~k~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 186 KSVTAIDISSEKLALAKSFGAMQTFNSSE 214 (346)
T ss_dssp SEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred cEEEEEechHHHHHHHHHcCCeEEEeCCC
Confidence 36889999999999999999887766543
No 15
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=35.33 E-value=46 Score=23.89 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=23.3
Q ss_pred CCeEEEecCCHHHHHHHHhcCCc--eEEEcC
Q 033033 37 PIKIILGSSSMARKEILAEMGYE--FTVVTA 65 (129)
Q Consensus 37 ~~~iILASsSPrR~elL~~lgi~--F~vvps 65 (129)
..++.+.|+|++...+|+.+|+. |+.+..
T Consensus 111 g~~i~i~t~~~~~~~~l~~~gl~~~fd~i~~ 141 (243)
T 4g9b_A 111 QISVGLASVSLNAPTILAALELREFFTFCAD 141 (243)
T ss_dssp TCEEEECCCCTTHHHHHHHTTCGGGCSEECC
T ss_pred cccceecccccchhhhhhhhhhccccccccc
Confidence 46899999999999999999984 555443
No 16
>2kta_A Putative helicase; PSI, NESG, GFT ATP-binding, nucleotide-binding, structu genomics, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=34.87 E-value=18 Score=23.03 Aligned_cols=18 Identities=17% Similarity=0.475 Sum_probs=15.2
Q ss_pred cCCHHHHHHHHhcCCceE
Q 033033 44 SSSMARKEILAEMGYEFT 61 (129)
Q Consensus 44 SsSPrR~elL~~lgi~F~ 61 (129)
.=|+.|.++|+.+|+.|.
T Consensus 49 ~Ls~eRi~~L~~lGf~w~ 66 (74)
T 2kta_A 49 KLPNDRRLLLDKIGFVWS 66 (74)
T ss_dssp CCCHHHHHHHHHHTCCCC
T ss_pred CCCHHHHHHHHHcCCEec
Confidence 348999999999998764
No 17
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=32.38 E-value=30 Score=25.92 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=27.2
Q ss_pred eEEEecCCHHH-----HHHHHhcCCceEEEcCCCCCCCCCCCCHHHHHH
Q 033033 39 KIILGSSSMAR-----KEILAEMGYEFTVVTAEIDEKSIRKDKPEDLVM 82 (129)
Q Consensus 39 ~iILASsSPrR-----~elL~~lgi~F~vvpsd~DE~~~~~~~p~e~v~ 82 (129)
-||.+|.|-+- .++|+.+|++|++.... .+..|+.+..
T Consensus 26 ~IimGS~SD~~v~~~a~~~L~~~gI~~e~~V~S------AHRtp~~l~~ 68 (181)
T 4b4k_A 26 GVIMGSTSDWETMKYACDILDELNIPYEKKVVS------AHRTPDYMFE 68 (181)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTTCCEEEEECC------TTTSHHHHHH
T ss_pred EEEECCHhHHHHHHHHHHHHHHcCCCeeEEEEc------cccChHHHHH
Confidence 48999999765 37899999999877543 2345654433
No 18
>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}
Probab=31.15 E-value=92 Score=22.11 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=24.3
Q ss_pred CCeEEEecCCH--HHHHH-HHhcCCceEEEcCCCCC
Q 033033 37 PIKIILGSSSM--ARKEI-LAEMGYEFTVVTAEIDE 69 (129)
Q Consensus 37 ~~~iILASsSP--rR~el-L~~lgi~F~vvpsd~DE 69 (129)
.++|+-...|| ||-.+ |...|++|+.+..+..+
T Consensus 22 ~MKLy~~~~SP~~~rVr~~L~e~gi~~e~~~v~~~~ 57 (225)
T 4glt_A 22 SMKLLYSNTSPYARKVRVVAAEKRIDVDMVLVVLAD 57 (225)
T ss_dssp CCEEEECSSCHHHHHHHHHHHHHTCCCEEEECCTTC
T ss_pred CceEecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 46899999998 44433 56699999988776544
No 19
>3ik5_A Protein NEF; protein-protein complex, cell membrane, lipoprotein, membran myristate; 2.05A {Simian immunodeficiency virus} SCOP: d.102.1.0 PDB: 3ioz_A
Probab=27.55 E-value=44 Score=24.15 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=16.9
Q ss_pred CCHHHHHHHHhc--------------------------CCceEEEcCCCCCCC
Q 033033 45 SSMARKEILAEM--------------------------GYEFTVVTAEIDEKS 71 (129)
Q Consensus 45 sSPrR~elL~~l--------------------------gi~F~vvpsd~DE~~ 71 (129)
-|++|++||... |.=|..+|.+.+|+.
T Consensus 42 yS~kR~~ILdl~~y~~qG~~pdWqnYT~GPG~RyPltFGWcfkLvPV~~~eea 94 (143)
T 3ik5_A 42 YSARRHRILDIYLEKEEGIIPDWQDYTSGPGIRYPKTFGWLWKLVPVNVSDEA 94 (143)
T ss_dssp CCHHHHHHHHHHHHHTTCBCSCCCCBCCCSSSBCBSSTTCCEEEEEC------
T ss_pred eccchhhcceeEEEeeccccCCcceeCCCCCccccccCceeEEEeECCcCccc
Confidence 489999999753 666888998887754
No 20
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=27.25 E-value=59 Score=20.07 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=13.5
Q ss_pred HHHHHhcCCceEEEcCC
Q 033033 50 KEILAEMGYEFTVVTAE 66 (129)
Q Consensus 50 ~elL~~lgi~F~vvpsd 66 (129)
+++|+..|++|+.+..+
T Consensus 25 k~~L~~~~i~~~~~di~ 41 (93)
T 1t1v_A 25 TRILDGKRIQYQLVDIS 41 (93)
T ss_dssp HHHHHHTTCCCEEEETT
T ss_pred HHHHHHCCCceEEEECC
Confidence 56888999999877554
No 21
>3hpd_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, ATP-binding, M metal-binding, nucleotide-binding, thiamine biosynthesis; 1.85A {Pyrococcus horikoshii}
Probab=23.81 E-value=37 Score=26.45 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=21.8
Q ss_pred CeEEE----ecCCHHHHHHHHh-cCCceEEEcCCCCC
Q 033033 38 IKIIL----GSSSMARKEILAE-MGYEFTVVTAEIDE 69 (129)
Q Consensus 38 ~~iIL----ASsSPrR~elL~~-lgi~F~vvpsd~DE 69 (129)
.++|| +..|+.|.+..++ +...|.++-++..|
T Consensus 87 ~PvVLDPVg~gas~~R~~~~~~ll~~~~~vIrgN~sE 123 (265)
T 3hpd_A 87 KPIVLDPVGAGATKFRTRVSLEILSRGVDVLKGNFGE 123 (265)
T ss_dssp CCEEEECTTBTTBHHHHHHHHHHHHHCCSEEEEEHHH
T ss_pred CCEEEcCCCCCCcHHHHHHHHHHHhcCCcEEcCCHHH
Confidence 35666 6788989777765 33357777777666
No 22
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=21.88 E-value=57 Score=24.61 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=26.0
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEcCCCCC
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVTAEIDE 69 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvpsd~DE 69 (129)
.++|....|+.|+++++++|.+..+...+.++
T Consensus 172 a~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~ 203 (324)
T 3nx4_A 172 YQVAAVSGRESTHGYLKSLGANRILSRDEFAE 203 (324)
T ss_dssp CCEEEEESCGGGHHHHHHHTCSEEEEGGGSSC
T ss_pred CEEEEEeCCHHHHHHHHhcCCCEEEecCCHHH
Confidence 47888888999999999999987776666554
No 23
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=21.42 E-value=43 Score=19.82 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCceEEEcCCCCC
Q 033033 48 ARKEILAEMGYEFTVVTAEIDE 69 (129)
Q Consensus 48 rR~elL~~lgi~F~vvpsd~DE 69 (129)
+=+.+|+.+|++|+.+.-|+++
T Consensus 19 ~~~~~L~~~~i~~~~~~vd~~~ 40 (89)
T 3msz_A 19 WAKQWFEENNIAFDETIIDDYA 40 (89)
T ss_dssp HHHHHHHHTTCCCEEEECCSHH
T ss_pred HHHHHHHHcCCCceEEEeecCC
Confidence 3456788899999888766554
No 24
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=20.86 E-value=1.3e+02 Score=22.86 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=22.5
Q ss_pred CeEEEecCCHHHHHHHHhcCCceEEEc
Q 033033 38 IKIILGSSSMARKEILAEMGYEFTVVT 64 (129)
Q Consensus 38 ~~iILASsSPrR~elL~~lgi~F~vvp 64 (129)
.++|....|+.|.++++++|.+..+..
T Consensus 191 a~Vi~~~~~~~~~~~~~~lGa~~~i~~ 217 (340)
T 3s2e_A 191 LRVAAVDIDDAKLNLARRLGAEVAVNA 217 (340)
T ss_dssp CEEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred CeEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence 478888899999999999998765544
No 25
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=20.40 E-value=37 Score=23.18 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=19.5
Q ss_pred eEEEecCCHHHHHHHHhcCCce
Q 033033 39 KIILGSSSMARKEILAEMGYEF 60 (129)
Q Consensus 39 ~iILASsSPrR~elL~~lgi~F 60 (129)
+|+++.+=|.|.||.+++|++|
T Consensus 84 evv~~G~yPt~eEl~~~lgi~~ 105 (106)
T 3ktb_A 84 EIAVSQTYPTTKQMSEWTGVNL 105 (106)
T ss_dssp EEEECSSCCCHHHHHHHHCCCC
T ss_pred EEEEeccCCCHHHHHHHhCCCC
Confidence 5778888899999999999976
Done!