Query 033035
Match_columns 129
No_of_seqs 151 out of 1142
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:39:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eqz_A High mobility group pro 99.9 2.2E-26 7.4E-31 152.8 11.2 81 45-125 5-86 (86)
2 2co9_A Thymus high mobility gr 99.9 3.2E-26 1.1E-30 156.6 11.1 82 45-127 7-88 (102)
3 1k99_A Upstream binding factor 99.9 5.1E-26 1.8E-30 155.0 8.9 80 47-127 2-81 (99)
4 1hme_A High mobility group pro 99.9 6E-26 2E-30 147.3 8.1 77 50-127 1-77 (77)
5 2lhj_A High mobility group pro 99.9 2E-26 6.9E-31 156.1 4.5 85 43-128 10-96 (97)
6 1cg7_A Protein (NON histone pr 99.9 2.7E-26 9.2E-31 154.5 4.3 83 45-128 10-92 (93)
7 2crj_A SWI/SNF-related matrix- 99.9 5.8E-25 2E-29 147.6 10.6 77 50-127 2-78 (92)
8 1aab_A High mobility group pro 99.9 9.5E-26 3.3E-30 148.5 5.6 78 50-127 2-80 (83)
9 1wgf_A Upstream binding factor 99.9 5.4E-26 1.8E-30 152.2 3.8 80 43-123 8-87 (90)
10 2e6o_A HMG box-containing prot 99.9 5.6E-25 1.9E-29 146.3 7.7 77 48-125 10-86 (87)
11 2cs1_A PMS1 protein homolog 1; 99.9 1.5E-24 5.2E-29 145.6 9.1 77 50-127 2-78 (92)
12 1hry_A Human SRY; DNA, DNA-bin 99.9 9E-25 3.1E-29 141.4 6.9 73 52-125 1-73 (76)
13 3nm9_A HMG-D, high mobility gr 99.9 3.5E-24 1.2E-28 138.0 9.5 72 53-127 1-72 (73)
14 1ckt_A High mobility group 1 p 99.9 6.3E-24 2.1E-28 135.7 8.5 70 55-124 1-71 (71)
15 1wxl_A Single-strand recogniti 99.9 5.1E-24 1.7E-28 137.3 7.6 72 53-127 1-72 (73)
16 1j46_A SRY, sex-determining re 99.9 8.5E-24 2.9E-28 139.9 8.4 74 52-126 1-74 (85)
17 2gzk_A Sex-determining region 99.9 1.8E-23 6.3E-28 152.0 10.9 81 46-127 79-159 (159)
18 1wz6_A HMG-box transcription f 99.9 4.5E-24 1.5E-28 140.2 5.0 76 50-126 2-77 (82)
19 4a3n_A Transcription factor SO 99.9 1.2E-23 4E-28 134.1 6.2 71 54-125 1-71 (71)
20 3f27_D Transcription factor SO 99.9 1.9E-23 6.6E-28 137.2 7.2 73 52-125 3-75 (83)
21 4euw_A Transcription factor SO 99.9 2.8E-23 9.6E-28 143.0 8.2 77 48-125 22-98 (106)
22 1gt0_D Transcription factor SO 99.9 3.1E-23 1.1E-27 135.5 7.8 72 54-126 1-72 (80)
23 1v64_A Nucleolar transcription 99.9 8E-23 2.7E-27 141.4 9.3 78 46-128 7-85 (108)
24 2lef_A LEF-1 HMG, protein (lym 99.9 6E-23 2.1E-27 136.0 8.1 71 54-125 1-71 (86)
25 2yrq_A High mobility group pro 99.9 1.4E-22 4.7E-27 149.4 10.7 80 47-127 93-172 (173)
26 1l8y_A Upstream binding factor 99.9 8.1E-23 2.8E-27 137.7 8.6 73 54-128 3-75 (91)
27 3u2b_C Transcription factor SO 99.9 4.8E-23 1.6E-27 134.0 7.0 71 54-125 1-71 (79)
28 1i11_A Transcription factor SO 99.9 6.9E-23 2.3E-27 134.2 6.3 72 53-125 2-73 (81)
29 3fgh_A Transcription factor A, 99.9 2.1E-22 7.2E-27 127.6 7.3 66 54-124 1-66 (67)
30 2yrq_A High mobility group pro 99.9 5E-22 1.7E-26 146.4 9.8 81 46-126 6-87 (173)
31 1v63_A Nucleolar transcription 99.9 3.1E-21 1.1E-25 131.9 10.0 75 51-128 4-78 (101)
32 2d7l_A WD repeat and HMG-box D 99.8 1.8E-21 6.1E-26 128.4 6.5 63 51-113 1-63 (81)
33 3tmm_A Transcription factor A, 99.8 1.7E-20 5.8E-25 145.1 8.3 77 49-126 35-111 (238)
34 2cto_A Novel protein; high mob 99.8 7.2E-21 2.5E-25 128.7 4.8 71 49-122 4-77 (93)
35 3tq6_A Transcription factor A, 99.8 3.1E-20 1.1E-24 141.6 8.9 74 52-126 6-79 (214)
36 2yuk_A Myeloid/lymphoid or mix 99.8 1.3E-21 4.5E-26 131.6 0.1 68 48-120 15-84 (90)
37 3tq6_A Transcription factor A, 99.8 9.1E-21 3.1E-25 144.6 2.1 75 48-127 107-181 (214)
38 3tmm_A Transcription factor A, 99.8 1.3E-20 4.4E-25 145.8 1.3 75 48-127 139-213 (238)
39 2gzk_A Sex-determining region 99.8 1.8E-18 6.1E-23 125.6 7.5 72 53-125 2-73 (159)
40 2qgu_A Probable signal peptide 76.1 3.2 0.00011 30.6 4.3 44 83-126 73-118 (211)
41 1j1d_B Troponin T, TNT; THIN f 32.7 79 0.0027 20.9 4.7 50 66-118 29-78 (106)
42 2wme_A BADH, betaine aldehyde 21.8 1.1E+02 0.0038 25.0 4.6 39 86-124 51-89 (490)
43 1o20_A Gamma-glutamyl phosphat 20.8 1.5E+02 0.0053 23.5 5.2 38 86-123 21-58 (427)
44 2lkw_A Membrane fusion protein 20.3 22 0.00074 17.4 0.0 10 55-64 10-19 (26)
No 1
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=152.79 Aligned_cols=81 Identities=32% Similarity=0.570 Sum_probs=76.3
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 033035 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (129)
Q Consensus 45 ~~~k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~-~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~ 123 (129)
++++..+||++|+||+|||||||+++|..|+.+||+++ +|.+|+++||++|++||+++|.+|.+.|..++++|..+|.+
T Consensus 5 ~~~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~ 84 (86)
T 2eqz_A 5 SSGMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKD 84 (86)
T ss_dssp CSSCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567899999999999999999999999999999996 47999999999999999999999999999999999999999
Q ss_pred Hh
Q 033035 124 YN 125 (129)
Q Consensus 124 Y~ 125 (129)
|+
T Consensus 85 Y~ 86 (86)
T 2eqz_A 85 YG 86 (86)
T ss_dssp HC
T ss_pred cC
Confidence 94
No 2
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.94 E-value=3.2e-26 Score=156.62 Aligned_cols=82 Identities=30% Similarity=0.564 Sum_probs=77.8
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 033035 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (129)
Q Consensus 45 ~~~k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y 124 (129)
+++++.+||++|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|
T Consensus 7 ~~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y 85 (102)
T 2co9_A 7 GKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQLAAY 85 (102)
T ss_dssp CSCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred hhh
Q 033035 125 NKK 127 (129)
Q Consensus 125 ~~k 127 (129)
+..
T Consensus 86 ~~~ 88 (102)
T 2co9_A 86 RAS 88 (102)
T ss_dssp HHH
T ss_pred Hhh
Confidence 875
No 3
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.93 E-value=5.1e-26 Score=155.04 Aligned_cols=80 Identities=26% Similarity=0.505 Sum_probs=76.5
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 033035 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (129)
Q Consensus 47 ~k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~ 126 (129)
+++.+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|..
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~e~~~y~~ 80 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFRE 80 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999 68999999999999999999999999999999999999999987
Q ss_pred h
Q 033035 127 K 127 (129)
Q Consensus 127 k 127 (129)
.
T Consensus 81 ~ 81 (99)
T 1k99_A 81 D 81 (99)
T ss_dssp C
T ss_pred H
Confidence 5
No 4
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.93 E-value=6e-26 Score=147.34 Aligned_cols=77 Identities=51% Similarity=0.835 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 033035 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (129)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~k 127 (129)
++||+.|+||+||||||+.++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++.+|..+|.+|+.+
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~k 77 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 77 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999999 789999999999999999999999999999999999999999763
No 5
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.92 E-value=2e-26 Score=156.14 Aligned_cols=85 Identities=36% Similarity=0.681 Sum_probs=79.3
Q ss_pred cccccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHH
Q 033035 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKL 120 (129)
Q Consensus 43 ~~~~~k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e 120 (129)
++++++..+||+.|+||+|||||||+++|..|+.+||++ + +.+|+++||++|++||+++|.+|.+.|..++++|..+
T Consensus 10 k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e 88 (97)
T 2lhj_A 10 VRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYERE 88 (97)
T ss_dssp CCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999999999999999999 5 7999999999999999999999999999999999999
Q ss_pred HHHHhhhc
Q 033035 121 MTAYNKKQ 128 (129)
Q Consensus 121 ~~~Y~~k~ 128 (129)
|.+|+.++
T Consensus 89 ~~~y~~~~ 96 (97)
T 2lhj_A 89 KAEYAQRK 96 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99998753
No 6
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.92 E-value=2.7e-26 Score=154.55 Aligned_cols=83 Identities=45% Similarity=0.704 Sum_probs=78.5
Q ss_pred cccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 033035 45 NVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (129)
Q Consensus 45 ~~~k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y 124 (129)
++++..+||+.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~Y 88 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEKELY 88 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred hhhc
Q 033035 125 NKKQ 128 (129)
Q Consensus 125 ~~k~ 128 (129)
..++
T Consensus 89 ~~~~ 92 (93)
T 1cg7_A 89 NATL 92 (93)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 9764
No 7
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.92 E-value=5.8e-25 Score=147.64 Aligned_cols=77 Identities=30% Similarity=0.528 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 033035 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (129)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~k 127 (129)
.+||++|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+.+
T Consensus 2 ~kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Y~~~ 78 (92)
T 2crj_A 2 SSGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKELWAYQQS 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 57999999999999999999999999999999 789999999999999999999999999999999999999999864
No 8
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.92 E-value=9.5e-26 Score=148.53 Aligned_cols=78 Identities=33% Similarity=0.571 Sum_probs=74.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 033035 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (129)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~-~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~k 127 (129)
++||++|+||+|||||||+++|..|+.+||+++ +|.+|+++||++|++||+++|.+|.++|..++++|..+|.+|+..
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y~~~ 80 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPP 80 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 479999999999999999999999999999995 368999999999999999999999999999999999999999764
No 9
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.92 E-value=5.4e-26 Score=152.23 Aligned_cols=80 Identities=30% Similarity=0.501 Sum_probs=74.1
Q ss_pred cccccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 033035 43 TKNVKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMT 122 (129)
Q Consensus 43 ~~~~~k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~ 122 (129)
+++++++.+||++|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++++|..+|.
T Consensus 8 k~k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 8 KPSQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp SSCSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred CCCcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788999999999999999999999999999999 7899999999999999999999999999999999988775
Q ss_pred H
Q 033035 123 A 123 (129)
Q Consensus 123 ~ 123 (129)
.
T Consensus 87 ~ 87 (90)
T 1wgf_A 87 P 87 (90)
T ss_dssp S
T ss_pred H
Confidence 4
No 10
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.91 E-value=5.6e-25 Score=146.33 Aligned_cols=77 Identities=26% Similarity=0.449 Sum_probs=73.9
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033035 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (129)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~ 125 (129)
+..+||+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++++|..++++|+
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~P~Yk 86 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLNPDCW 86 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 4678999999999999999999999999999999 7899999999999999999999999999999999999998885
No 11
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=145.57 Aligned_cols=77 Identities=26% Similarity=0.388 Sum_probs=73.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 033035 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (129)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~k 127 (129)
..+|++||||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|...
T Consensus 2 ~~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~~~y~~~ 78 (92)
T 2cs1_A 2 SSGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQMKRAIEQ 78 (92)
T ss_dssp CCCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999 789999999999999999999999999999999999999999875
No 12
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.91 E-value=9e-25 Score=141.43 Aligned_cols=73 Identities=33% Similarity=0.471 Sum_probs=69.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033035 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (129)
Q Consensus 52 dp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~ 125 (129)
||+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|.
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 73 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 799999999999999999999999999999 6799999999999999999999999999999999999999885
No 13
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.91 E-value=3.5e-24 Score=138.00 Aligned_cols=72 Identities=42% Similarity=0.770 Sum_probs=69.1
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 033035 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (129)
Q Consensus 53 p~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~k 127 (129)
.++||||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+ |.+|.+.|..++++|..+|.+|+.+
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~~~~Y~~k 72 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRAVKEFEAN 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999 689999999999999998 9999999999999999999999874
No 14
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.90 E-value=6.3e-24 Score=135.67 Aligned_cols=70 Identities=33% Similarity=0.592 Sum_probs=67.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 033035 55 KPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (129)
Q Consensus 55 ~PKRP~say~lF~~e~r~~~k~e~p~~~-~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y 124 (129)
+||||+||||||++++|..|+.+||+++ +|.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~Y 71 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 71 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999996 479999999999999999999999999999999999999887
No 15
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.90 E-value=5.1e-24 Score=137.26 Aligned_cols=72 Identities=38% Similarity=0.706 Sum_probs=69.4
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 033035 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (129)
Q Consensus 53 p~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~k 127 (129)
||+|+||+||||||++++|..|+.+||++ ++.+|+++||++|++| ++|.+|.+.|..++++|..+|.+|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~~Y~~~ 72 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMRNYKPE 72 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTGGGTTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 79999999999999999999999999999 7899999999999999 889999999999999999999999864
No 16
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.90 E-value=8.5e-24 Score=139.94 Aligned_cols=74 Identities=32% Similarity=0.455 Sum_probs=71.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 033035 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (129)
Q Consensus 52 dp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~ 126 (129)
.|+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|.-
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 74 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYKY 74 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCccccc
Confidence 489999999999999999999999999999 78999999999999999999999999999999999999999963
No 17
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.90 E-value=1.8e-23 Score=152.00 Aligned_cols=81 Identities=49% Similarity=0.806 Sum_probs=76.7
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033035 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (129)
Q Consensus 46 ~~k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~ 125 (129)
++++.+||+.|+||+|||||||+++|..|+.+||++ ++++|+++||++|++||+++|.+|.+.|..++++|..+|.+|+
T Consensus 79 ~kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 157 (159)
T 2gzk_A 79 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYR 157 (159)
T ss_dssp CGGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999 7899999999999999999999999999999999999999998
Q ss_pred hh
Q 033035 126 KK 127 (129)
Q Consensus 126 ~k 127 (129)
.+
T Consensus 158 ~~ 159 (159)
T 2gzk_A 158 AK 159 (159)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 18
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.89 E-value=4.5e-24 Score=140.16 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 033035 50 KKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (129)
Q Consensus 50 ~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~ 126 (129)
..||+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+.
T Consensus 2 ~~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~yk~ 77 (82)
T 1wz6_A 2 SSGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANPGYRS 77 (82)
T ss_dssp CSSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCSSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 35899999999999999999999999999999 67999999999999999999999999999999999999999874
No 19
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.89 E-value=1.2e-23 Score=134.15 Aligned_cols=71 Identities=31% Similarity=0.514 Sum_probs=63.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033035 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (129)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~ 125 (129)
+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|++|+
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~YK 71 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 71 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCcCcC
Confidence 5799999999999999999999999999 6899999999999999999999999999999999999999985
No 20
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.89 E-value=1.9e-23 Score=137.19 Aligned_cols=73 Identities=30% Similarity=0.494 Sum_probs=67.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033035 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (129)
Q Consensus 52 dp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~ 125 (129)
.++.|+||+|||||||+++|..|..+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~Yk 75 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYK 75 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 578999999999999999999999999999 6899999999999999999999999999999999999999986
No 21
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=143.00 Aligned_cols=77 Identities=26% Similarity=0.489 Sum_probs=69.6
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033035 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (129)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~ 125 (129)
...+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|.++|..++++|..+|++|+
T Consensus 22 ~~~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~~Yk 98 (106)
T 4euw_A 22 QSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYK 98 (106)
T ss_dssp ------CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred hccCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3567899999999999999999999999999999 7899999999999999999999999999999999999999996
No 22
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.89 E-value=3.1e-23 Score=135.46 Aligned_cols=72 Identities=32% Similarity=0.490 Sum_probs=69.3
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 033035 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (129)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~ 126 (129)
+.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|.-
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk~ 72 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKY 72 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCccccc
Confidence 5799999999999999999999999999 78999999999999999999999999999999999999999964
No 23
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=8e-23 Score=141.37 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=72.1
Q ss_pred ccccCCCCCCC-CCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 033035 46 VKSAKKDPNKP-KRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (129)
Q Consensus 46 ~~k~~kdp~~P-KRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y 124 (129)
+.++.+||+.| |||+|||||||+++|..|+ ++ ++.+|+++||++|++||+++|.+|.++|..++++|..+|.+|
T Consensus 7 ~~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y 81 (108)
T 1v64_A 7 GQLKDKFDGRPTKPPPNSYSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRF 81 (108)
T ss_dssp CCSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999 9999999999999999986 66 689999999999999999999999999999999999999999
Q ss_pred hhhc
Q 033035 125 NKKQ 128 (129)
Q Consensus 125 ~~k~ 128 (129)
....
T Consensus 82 ~~~~ 85 (108)
T 1v64_A 82 LESL 85 (108)
T ss_dssp HHHS
T ss_pred HhhC
Confidence 8753
No 24
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=6e-23 Score=135.99 Aligned_cols=71 Identities=23% Similarity=0.388 Sum_probs=68.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033035 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (129)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~ 125 (129)
+.|+||+||||||++++|..|..+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|.
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~~Yk 71 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWS 71 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 4799999999999999999999999999 7899999999999999999999999999999999999999997
No 25
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=149.42 Aligned_cols=80 Identities=50% Similarity=0.816 Sum_probs=76.3
Q ss_pred cccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 033035 47 KSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (129)
Q Consensus 47 ~k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~ 126 (129)
+++.+||+.|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+.
T Consensus 93 kk~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~~ 171 (173)
T 2yrq_A 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 171 (173)
T ss_dssp SCSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccCCccccCcccHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567999999999999999999999999999999 78999999999999999999999999999999999999999987
Q ss_pred h
Q 033035 127 K 127 (129)
Q Consensus 127 k 127 (129)
+
T Consensus 172 k 172 (173)
T 2yrq_A 172 K 172 (173)
T ss_dssp C
T ss_pred c
Confidence 5
No 26
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.88 E-value=8.1e-23 Score=137.74 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=69.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 033035 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 128 (129)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~k~ 128 (129)
|.|+||+|||+||++++|..++.++|+ ++++|++.||++|++||+++|.+|+++|..++++|+.+|.+|+.+.
T Consensus 3 ~kPKrP~SAy~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm~~Y~~~~ 75 (91)
T 1l8y_A 3 KLPESPKRAEEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPP 75 (91)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHHHTTSCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 689999999999999999999999998 5799999999999999999999999999999999999999998753
No 27
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.88 E-value=4.8e-23 Score=134.01 Aligned_cols=71 Identities=28% Similarity=0.493 Sum_probs=68.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033035 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (129)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~ 125 (129)
|.|+||+||||||++++|..|..+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..++++|+
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p~Yk 71 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYPDYK 71 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 5799999999999999999999999999 6899999999999999999999999999999999999999986
No 28
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.87 E-value=6.9e-23 Score=134.21 Aligned_cols=72 Identities=28% Similarity=0.471 Sum_probs=68.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033035 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (129)
Q Consensus 53 p~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~ 125 (129)
++.|+||+||||||++++|..|+.+||++ ++.+|+++||++|++||+++|.+|.+.|..++.+|..++.+|.
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p~Yk 73 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYK 73 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCSCC-
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCCCCe
Confidence 57899999999999999999999999999 6899999999999999999999999999999999999999886
No 29
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.87 E-value=2.1e-22 Score=127.57 Aligned_cols=66 Identities=33% Similarity=0.519 Sum_probs=62.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 033035 54 NKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (129)
Q Consensus 54 ~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y 124 (129)
|.||||+|||+|||+++|..|+..|| .+|+++||++|++||+++|.+|.+.|..++++|..+|.+|
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e~~~y 66 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSW 66 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999987654 6999999999999999999999999999999999999998
No 30
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5e-22 Score=146.43 Aligned_cols=81 Identities=32% Similarity=0.548 Sum_probs=75.9
Q ss_pred ccccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCc-cHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 033035 46 VKSAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVK-AVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (129)
Q Consensus 46 ~~k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~-~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y 124 (129)
.++..+||++|+||+|||||||+++|..|+.+||+++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|.+|
T Consensus 6 ~k~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~~y 85 (173)
T 2yrq_A 6 SGMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 85 (173)
T ss_dssp CSSSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4456789999999999999999999999999999942 789999999999999999999999999999999999999999
Q ss_pred hh
Q 033035 125 NK 126 (129)
Q Consensus 125 ~~ 126 (129)
..
T Consensus 86 ~~ 87 (173)
T 2yrq_A 86 IP 87 (173)
T ss_dssp CC
T ss_pred hh
Confidence 64
No 31
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.85 E-value=3.1e-21 Score=131.86 Aligned_cols=75 Identities=15% Similarity=0.302 Sum_probs=66.6
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 033035 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKKQ 128 (129)
Q Consensus 51 kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~k~ 128 (129)
...++||||+|||||||++++. ..+++++ ++.+|+++||++|++||+++|.+|+++|..++++|..+|.+|....
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~-~~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~Y~~~~ 78 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHL-PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHLDLWVKSL 78 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4567899999999999999964 2345556 6899999999999999999999999999999999999999998753
No 32
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=128.45 Aligned_cols=63 Identities=22% Similarity=0.378 Sum_probs=59.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHH
Q 033035 51 KDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKR 113 (129)
Q Consensus 51 kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~ 113 (129)
.++|.||||+|||||||+++|..|+.+||+++++.+|+++||++|++||+++|.+|+++|..+
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d 63 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGE 63 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999943899999999999999999999999999876
No 33
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=145.11 Aligned_cols=77 Identities=17% Similarity=0.401 Sum_probs=73.9
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 033035 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (129)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~ 126 (129)
...||++|+||+|||+|||+++|..|+.+||++ ++.+|+++||++|+.||+++|.+|++.|..++++|+.+|..|..
T Consensus 35 s~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~ 111 (238)
T 3tmm_A 35 SSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKE 111 (238)
T ss_dssp CCHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466899999999999999999999999999999 68999999999999999999999999999999999999999964
No 34
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.2e-21 Score=128.67 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=65.5
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHH---HHhhcCCChhhhHHHHHHHHHHHHHHHHHHH
Q 033035 49 AKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAG---GEKWKSLTDAEKAPFEAKAAKRKLDYEKLMT 122 (129)
Q Consensus 49 ~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l---~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~ 122 (129)
...++|.||||+|||||||+++|..|+.+ ++ ++.+|+++| |++|++|++++|.+|+++|..++++|++++.
T Consensus 4 ~~~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~-~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~ 77 (93)
T 2cto_A 4 GSSGMPNRKASRNAYYFFVQEKIPELRRR--GL-PVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPG 77 (93)
T ss_dssp CCCCCCCCCSSCCHHHHHHHTTHHHHHHH--TC-CCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 35689999999999999999999999988 67 678999999 9999999999999999999999999998763
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.82 E-value=3.1e-20 Score=141.63 Aligned_cols=74 Identities=18% Similarity=0.420 Sum_probs=71.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 033035 52 DPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNK 126 (129)
Q Consensus 52 dp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~ 126 (129)
+|++|+||+|||||||+++|..|+.+||++ ++.+|+++||++|++||+++|.+|++.|..++++|..+|..|..
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~~~y~~ 79 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKE 79 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHhhhhcc
Confidence 478999999999999999999999999999 68999999999999999999999999999999999999999964
No 36
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-21 Score=131.63 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=62.8
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCcc--HHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHH
Q 033035 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKA--VSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKL 120 (129)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~--~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e 120 (129)
+..+|||.|+||+|||||||+++|..|+.+||++ + +++|+ ++|++|++++|.+|++.|+.++++|...
T Consensus 15 k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~-s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~ 84 (90)
T 2yuk_A 15 KWEKEEALGEMATVAPVLYTNINFPNLKEEFPDW-TTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRIN 84 (90)
T ss_dssp HHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSH-HHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCc-cchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 4567999999999999999999999999999999 6 77887 9999999999999999999999998753
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.80 E-value=9.1e-21 Score=144.60 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=69.1
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 033035 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (129)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~k 127 (129)
+..+||+.|+||+|||||||+++|..|+.+|| .+|+++||++|++||+++|.+|.+.|..++++|..+|.+|+.+
T Consensus 107 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~~ 181 (214)
T 3tq6_A 107 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 181 (214)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSSCSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCcccccchhhhhHHHHHHhhccCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998866543 5899999999999999999999999999999999999999875
No 38
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.3e-20 Score=145.79 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=69.3
Q ss_pred ccCCCCCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 033035 48 SAKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYNKK 127 (129)
Q Consensus 48 k~~kdp~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~~k 127 (129)
+..+||+.|+||+|||||||+++|..|+.+|| .+|+++||++|++|++++|.+|++.|..++++|..+|.+|+.+
T Consensus 139 k~~kdp~~PKrP~say~lF~~e~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~~~y~~k 213 (238)
T 3tmm_A 139 KELTLLGKPKRPRSAYNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQ 213 (238)
T ss_dssp HHHHHTTCCCCCCCHHHHHHHHHTTTSCCSSH-----HHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998876554 5899999999999999999999999999999999999999875
No 39
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.75 E-value=1.8e-18 Score=125.56 Aligned_cols=72 Identities=33% Similarity=0.491 Sum_probs=69.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 033035 53 PNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAYN 125 (129)
Q Consensus 53 p~~PKRP~say~lF~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y~ 125 (129)
|+.|+||+||||||+.+.+..|..+||++ ++.+|+++||++|++||+++|.+|.+.|..++++|..+|..|.
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~~y~ 73 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYPNYK 73 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCSSCS
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 68999999999999999999999999999 7899999999999999999999999999999999999999985
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=76.06 E-value=3.2 Score=30.61 Aligned_cols=44 Identities=9% Similarity=0.137 Sum_probs=34.6
Q ss_pred cHHHHHHH-HHHhhcCCChhhhHHHHHHHHH-HHHHHHHHHHHHhh
Q 033035 83 AVSAVGKA-GGEKWKSLTDAEKAPFEAKAAK-RKLDYEKLMTAYNK 126 (129)
Q Consensus 83 ~~~ei~k~-l~~~Wk~ls~~eK~~Y~~~a~~-~k~~Y~~e~~~Y~~ 126 (129)
+|..+++. +|.-|+.+|++++..|.+.... ...-|-..+..|..
T Consensus 73 D~~~~a~~vLG~~wr~at~~Qr~~F~~~F~~~L~~tY~~~l~~y~~ 118 (211)
T 2qgu_A 73 DFKRTTQIAMGRFWSQATPEQQQQIQDGFKSLLIRTYAGALANVRN 118 (211)
T ss_dssp CHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHhHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 56666654 5899999999999999987766 45668888888864
No 41
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=32.70 E-value=79 Score=20.91 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHH
Q 033035 66 FLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYE 118 (129)
Q Consensus 66 F~~e~r~~~k~e~p~~~~~~ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~ 118 (129)
|+.+++.-+ ..+++ +..++...|.+.|.-+..-+=..|.-.+...+..|+
T Consensus 29 iLaER~kpL--~id~l-~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yE 78 (106)
T 1j1d_B 29 ILAERRKVL--AIDHL-NEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYE 78 (106)
T ss_dssp HHHHHHHHH--HHTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC--CCCCC-CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHH
Confidence 556666555 33455 567899999999999988888889888888877775
No 42
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=21.77 E-value=1.1e+02 Score=25.05 Aligned_cols=39 Identities=13% Similarity=0.245 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 033035 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTAY 124 (129)
Q Consensus 86 ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~Y 124 (129)
+.++.....|+.+|..+|..+.........++..++...
T Consensus 51 ~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~ 89 (490)
T 2wme_A 51 QSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAAL 89 (490)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345556678999999999999988888877777776553
No 43
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=20.80 E-value=1.5e+02 Score=23.52 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHH
Q 033035 86 AVGKAGGEKWKSLTDAEKAPFEAKAAKRKLDYEKLMTA 123 (129)
Q Consensus 86 ei~k~l~~~Wk~ls~~eK~~Y~~~a~~~k~~Y~~e~~~ 123 (129)
+.++.....|+.+|..+|..+.........++..++..
T Consensus 21 ~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~ 58 (427)
T 1o20_A 21 KKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILE 58 (427)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34555567899999999999998888877777766654
No 44
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=20.31 E-value=22 Score=17.45 Aligned_cols=10 Identities=50% Similarity=1.042 Sum_probs=7.1
Q ss_pred CCCCCCChHH
Q 033035 55 KPKRPPSAFF 64 (129)
Q Consensus 55 ~PKRP~say~ 64 (129)
+|-.|++||+
T Consensus 10 ppapppnafv 19 (26)
T 2lkw_A 10 PPAPPPNAFV 19 (26)
T ss_pred CCCcCCCeeE
Confidence 5666788875
Done!