Query 033037
Match_columns 129
No_of_seqs 149 out of 673
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13193 pyrrolidone-carboxyla 100.0 5.1E-29 1.1E-33 195.7 9.0 110 2-112 36-174 (209)
2 PRK13195 pyrrolidone-carboxyla 100.0 1.2E-28 2.5E-33 195.4 9.6 124 2-126 37-206 (222)
3 PF01470 Peptidase_C15: Pyrogl 100.0 3.2E-29 7E-34 195.1 6.1 125 2-127 36-201 (202)
4 COG2039 Pcp Pyrrolidone-carbox 100.0 1.2E-28 2.5E-33 191.7 8.9 106 2-109 36-173 (207)
5 PRK13196 pyrrolidone-carboxyla 100.0 1.9E-28 4.1E-33 192.6 9.7 126 2-128 37-210 (211)
6 PRK13194 pyrrolidone-carboxyla 100.0 2.3E-28 5E-33 191.8 9.4 126 2-128 36-206 (208)
7 PRK13197 pyrrolidone-carboxyla 99.9 1.6E-27 3.4E-32 187.6 9.8 125 2-127 37-202 (215)
8 TIGR00504 pyro_pdase pyrogluta 99.9 4.1E-27 8.9E-32 185.0 9.9 124 2-126 34-198 (212)
9 cd00501 Peptidase_C15 Pyroglut 99.9 2.9E-25 6.2E-30 171.0 5.7 108 3-111 37-175 (194)
10 KOG4755 Predicted pyroglutamyl 99.7 1E-17 2.2E-22 132.1 5.5 123 2-129 46-213 (213)
11 PF01261 AP_endonuc_2: Xylose 70.9 30 0.00066 25.0 7.3 74 54-127 28-119 (213)
12 PRK10667 Hha toxicity attenuat 70.1 6.1 0.00013 29.0 3.3 44 77-128 15-58 (122)
13 PF10757 YbaJ: Biofilm formati 66.5 8.2 0.00018 28.4 3.3 44 77-128 15-58 (122)
14 COG0276 HemH Protoheme ferro-l 64.7 46 0.00099 28.2 7.9 76 44-124 234-316 (320)
15 PF10662 PduV-EutP: Ethanolami 64.3 7.1 0.00015 29.2 2.7 31 72-102 41-71 (143)
16 PF02662 FlpD: Methyl-viologen 56.2 16 0.00034 26.4 3.3 40 78-117 5-48 (124)
17 PF04273 DUF442: Putative phos 51.7 83 0.0018 22.2 6.8 60 48-109 9-69 (110)
18 PLN02538 2,3-bisphosphoglycera 43.8 1.6E+02 0.0034 27.0 8.2 119 5-127 71-191 (558)
19 PRK02220 4-oxalocrotonate taut 42.0 48 0.001 20.0 3.5 29 100-128 3-31 (61)
20 PRK00035 hemH ferrochelatase; 41.9 1.8E+02 0.0038 23.9 7.8 73 49-124 244-321 (333)
21 PF01514 YscJ_FliF: Secretory 38.2 1.1E+02 0.0023 23.9 5.6 81 47-127 29-122 (206)
22 smart00874 B5 tRNA synthetase 37.4 86 0.0019 19.5 4.3 51 51-127 17-67 (71)
23 TIGR00013 taut 4-oxalocrotonat 36.5 67 0.0015 19.4 3.6 28 100-128 4-31 (63)
24 PF13299 CPSF100_C: Cleavage a 36.0 39 0.00084 25.4 2.8 38 45-83 92-129 (161)
25 PRK01964 4-oxalocrotonate taut 34.4 68 0.0015 19.7 3.3 29 100-128 3-31 (64)
26 PF09419 PGP_phosphatase: Mito 34.2 92 0.002 23.8 4.6 48 54-103 63-113 (168)
27 PRK15324 type III secretion sy 33.5 2.4E+02 0.0052 22.9 7.2 83 46-128 20-116 (252)
28 PF10330 Stb3: Putative Sin3 b 33.0 52 0.0011 23.1 2.8 25 99-123 30-54 (92)
29 PRK02289 4-oxalocrotonate taut 32.7 80 0.0017 19.4 3.4 30 97-128 2-31 (60)
30 COG1954 GlpP Glycerol-3-phosph 30.9 91 0.002 24.4 4.1 27 95-121 47-74 (181)
31 cd00491 4Oxalocrotonate_Tautom 30.4 97 0.0021 18.2 3.5 28 99-128 3-30 (58)
32 TIGR01856 hisJ_fam histidinol 29.6 49 0.0011 26.1 2.5 26 51-76 214-239 (253)
33 PRK00745 4-oxalocrotonate taut 29.4 1E+02 0.0023 18.5 3.6 29 98-128 3-31 (62)
34 TIGR03764 ICE_PFGI_1_parB inte 28.9 95 0.0021 25.6 4.1 49 44-93 21-76 (258)
35 PRK08123 histidinol-phosphatas 28.1 62 0.0013 25.8 2.9 26 51-76 227-252 (270)
36 cd00127 DSPc Dual specificity 27.3 2.1E+02 0.0045 19.5 6.1 32 47-78 8-39 (139)
37 TIGR01240 mevDPdecarb diphosph 27.2 42 0.0009 27.8 1.8 33 44-76 247-281 (305)
38 PF00047 ig: Immunoglobulin do 27.0 13 0.00028 22.1 -1.0 9 73-81 55-63 (64)
39 PTZ00397 macrophage migration 26.7 1.1E+02 0.0024 21.2 3.7 34 95-128 55-88 (116)
40 PF10096 DUF2334: Uncharacteri 25.9 3.3E+02 0.0072 21.5 9.1 53 55-108 18-80 (243)
41 PF06953 ArsD: Arsenical resis 25.9 2.1E+02 0.0045 20.8 5.1 50 53-102 27-79 (123)
42 PF10431 ClpB_D2-small: C-term 25.8 39 0.00084 21.8 1.1 33 53-85 12-44 (81)
43 smart00803 TAF TATA box bindin 24.6 92 0.002 20.0 2.7 40 52-92 2-41 (65)
44 cd04974 Ig3_FGFR Third immunog 24.6 23 0.00049 23.2 -0.2 11 73-83 65-75 (90)
45 COG4917 EutP Ethanolamine util 24.5 89 0.0019 23.7 2.9 22 71-92 41-62 (148)
46 cd05713 Ig_MOG_like Immunoglob 24.1 18 0.00039 23.8 -0.8 12 73-84 75-86 (100)
47 cd05725 Ig3_Robo Third immunog 24.0 16 0.00036 22.3 -0.9 10 73-82 45-54 (69)
48 KOG3246 Sentrin-specific cyste 23.8 90 0.0019 25.3 3.0 53 71-127 164-216 (223)
49 cd00520 RRF Ribosome recycling 23.6 2.4E+02 0.0052 21.5 5.3 20 96-118 91-110 (179)
50 PRK07328 histidinol-phosphatas 23.5 78 0.0017 25.1 2.7 26 51-76 206-231 (269)
51 PF01321 Creatinase_N: Creatin 23.4 1.2E+02 0.0025 20.3 3.2 32 55-90 2-33 (132)
52 cd05758 Ig5_KIRREL3-like Fifth 23.3 24 0.00051 23.3 -0.3 13 69-81 71-83 (98)
53 cd05718 Ig1_PVR_like First imm 22.7 22 0.00049 23.0 -0.5 11 73-83 72-82 (98)
54 cd05763 Ig_1 Subgroup of the i 22.6 23 0.00049 22.1 -0.5 11 72-82 49-59 (75)
55 cd06568 GH20_SpHex_like A subg 22.4 2.2E+02 0.0047 23.7 5.2 82 46-128 68-152 (329)
56 smart00408 IGc2 Immunoglobulin 22.4 23 0.0005 19.8 -0.4 10 72-81 48-57 (63)
57 cd05863 Ig2_VEGFR-3 Second imm 22.4 17 0.00038 23.1 -1.1 11 72-82 40-50 (67)
58 cd05738 Ig2_RPTP_IIa_LAR_like 22.3 21 0.00045 22.4 -0.7 11 72-82 47-57 (74)
59 PF13866 zf-SAP30: SAP30 zinc- 21.8 97 0.0021 21.1 2.5 29 56-84 32-61 (78)
60 TIGR01307 pgm_bpd_ind 2,3-bisp 21.8 5.9E+02 0.013 22.9 10.2 114 5-127 49-170 (501)
61 PF07592 DDE_Tnp_ISAZ013: Rhod 21.5 1.5E+02 0.0032 25.1 4.0 65 46-124 18-85 (311)
62 cd05892 Ig_Myotilin_C C-termin 21.3 22 0.00047 22.9 -0.8 11 72-82 50-60 (75)
63 PF13107 DUF3964: Protein of u 21.3 57 0.0012 23.3 1.3 22 86-107 74-95 (109)
64 cd05895 Ig_Pro_neuregulin-1 Im 21.1 26 0.00056 21.8 -0.4 11 72-82 53-63 (76)
65 cd06562 GH20_HexA_HexB-like Be 21.0 2.9E+02 0.0063 23.0 5.7 74 46-128 63-147 (348)
66 smart00406 IGv Immunoglobulin 20.9 19 0.00041 22.0 -1.1 9 73-81 72-80 (81)
67 PRK01271 4-oxalocrotonate taut 20.9 1.6E+02 0.0035 19.5 3.4 29 100-128 3-32 (76)
68 cd05711 Ig_FcalphaRI Immunoglo 20.8 24 0.00052 23.6 -0.7 16 71-86 63-78 (94)
69 PRK05434 phosphoglyceromutase; 20.5 6.3E+02 0.014 22.7 10.3 117 5-127 53-174 (507)
70 TIGR00653 GlnA glutamine synth 20.5 3E+02 0.0066 24.1 5.9 73 56-128 186-301 (460)
71 cd05742 Ig1_VEGFR_like First i 20.4 23 0.00049 22.6 -0.8 10 73-82 59-68 (84)
72 PF06967 Mo-nitro_C: Mo-depend 20.3 1.9E+02 0.004 20.0 3.6 12 100-111 45-56 (84)
73 cd05751 Ig1_LILRB1_like First 20.2 17 0.00036 24.0 -1.5 11 73-83 63-73 (91)
74 PRK08392 hypothetical protein; 20.2 96 0.0021 23.8 2.5 25 53-77 161-185 (215)
75 cd05732 Ig5_NCAM-1_like Fifth 20.1 29 0.00063 22.4 -0.4 12 72-83 71-82 (96)
76 cd05734 Ig7_DSCAM Seventh immu 20.0 27 0.0006 21.9 -0.5 12 72-83 53-64 (79)
No 1
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.96 E-value=5.1e-29 Score=195.68 Aligned_cols=110 Identities=23% Similarity=0.321 Sum_probs=94.3
Q ss_pred cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C-------------CCCCcceEEec
Q 033037 2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T-------------NTNNEQVIWTS 52 (129)
Q Consensus 2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~-------------~~~~~~~~~T~ 52 (129)
+.++.||+.+....+.+.+.+ |++++|+. +++|+ |+|. . ..+|+..|||+
T Consensus 36 v~~~~LPv~~~~~~~~l~~~~~~~~Pd~vl~~G~a~~r~~-i~lEr~AiN~~d~~~pDn~G~~p~~~~I~~~gp~~~~t~ 114 (209)
T PRK13193 36 VKGVILPVEYEKIEDLIVTKIREMKPILTLGIGVAPGRAK-ITPEKIAINYKYSREGDNAGKKYKGEKIDPLGQDGIFTN 114 (209)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHCCCEEEEecccCCcCc-eEEEEEEEccCcCcCCccCCCCcCCCcccCCCcceeecC
Confidence 356789999888776655433 99999999 99999 6874 0 12778999999
Q ss_pred CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhcCCceEEEEeCCCCCCChH
Q 033037 53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDED 112 (129)
Q Consensus 53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e 112 (129)
+|+++|+++|+++|+|+++|+|||+|||||+||++|++.++.+.+++|||||+++++..+
T Consensus 115 lp~~~l~~~l~~~Gip~~~S~~AG~yvCN~vyY~sl~~~~~~~~~a~FIHVP~~~~~~~~ 174 (209)
T PRK13193 115 IPVEDLVDLLNENGIPAELSLSAGSYLCNNAMYIIIREARKYNSLGGFIHVPLHESYAAR 174 (209)
T ss_pred CCHHHHHHHHHhcCCCceEecCCccchhHHHHHHHHHHHhccCCeeEEEEeCCchhhhhh
Confidence 999999999999999999999999999999999999998766679999999998877643
No 2
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.95 E-value=1.2e-28 Score=195.38 Aligned_cols=124 Identities=21% Similarity=0.292 Sum_probs=99.3
Q ss_pred cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC-------CC-------------CCCcceE
Q 033037 2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ-------TN-------------TNNEQVI 49 (129)
Q Consensus 2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~-------~~-------------~~~~~~~ 49 (129)
+.++.||+.+......+.+.+ |++++|+. +++|+ |+|. .+ .+|+.+|
T Consensus 37 v~~~~lPv~f~~~~~~l~~~i~~~~Pd~Vi~~G~a~gr~~-itlErvAiN~~d~~~~~ipDn~G~~p~~~~I~~~gp~ay 115 (222)
T PRK13195 37 VISRIVPNTFFESIAAAQQAIAEIEPALVIMLGEYPGRSM-ITVERLAQNVNDCGRYGLADCAGRVLVGEPTDPAGPVAY 115 (222)
T ss_pred EEEEEeCeEehHHHHHHHHHHHHHCCCEEEEeCccCCcCc-eEeEEEEEecccccccCCCCCCCCcCCCCcccCCCccee
Confidence 356779999877555544443 99999999 99999 6773 11 2688999
Q ss_pred EecCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCCCC------------hHHHH
Q 033037 50 WTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTID------------EDTQM 115 (129)
Q Consensus 50 ~T~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~~~------------~e~~~ 115 (129)
||+||+++|+++|+++|+|+++|+|||+|||||+||++||+.+++ +.+++|||||+++++. -+.+.
T Consensus 116 ~stLpv~~iv~~l~~~gipa~vS~~AGtYvCN~v~Y~sL~~~~~~~~~~~agFIHVP~~p~q~~~~~~~~~psm~l~~~~ 195 (222)
T PRK13195 116 HATVPVRAMVLAMRKAGVPADVSDAAGTFVCNHLMYGVLHHLAQKGLPVRAGWIHLPCLPSVAALDHNLGVPSMSVQTAV 195 (222)
T ss_pred ecCCCHHHHHHHHHhcCCCceEecCCCcceehHHHHHHHHHHhhcCCCceEEEEEcCCCHHHhhhcCCCCCCCCcHHHHH
Confidence 999999999999999999999999999999999999999998764 3589999999776543 34455
Q ss_pred HHHHHHHHHHH
Q 033037 116 QFVATLFEAVA 126 (129)
Q Consensus 116 ~~v~~li~~la 126 (129)
+.+...|++..
T Consensus 196 ~av~~~i~~~~ 206 (222)
T PRK13195 196 AGVTAGIEAAI 206 (222)
T ss_pred HHHHHHHHHHH
Confidence 55666666554
No 3
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=99.95 E-value=3.2e-29 Score=195.12 Aligned_cols=125 Identities=30% Similarity=0.463 Sum_probs=89.2
Q ss_pred cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC-----------------CCCCCcceEEec
Q 033037 2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ-----------------TNTNNEQVIWTS 52 (129)
Q Consensus 2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~-----------------~~~~~~~~~~T~ 52 (129)
+.++.||+.+......+.+.+ |++++|+. .+||+ |+|. ...+|+..|+|+
T Consensus 36 v~~~~lPV~~~~~~~~l~~~l~~~~PdlVIhlGva~~~~~-i~lEr~A~N~~d~~~pD~~G~~p~~~~i~~~gp~~~~t~ 114 (202)
T PF01470_consen 36 VHTRELPVSYEKAFEALEELLEEHQPDLVIHLGVAGGRKS-IRLERVAINWADFRIPDNDGRQPKDEPIVPDGPEAYFTT 114 (202)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHH--SEEEEEEE-TT-SS-EEEESEEES-BE-SS--TTS---ESB-SSTTS-SEEE-B
T ss_pred EEEEEecCchHhHHHHHHHHHHhcCCcEEEEEeecCCcch-hhHHHHhhccCCCcCCcccCCccCCccccCCCccceecC
Confidence 346678998887544443333 99999998 99999 6654 122889999999
Q ss_pred CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCCC----------ChHHHHHHHHH
Q 033037 53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTI----------DEDTQMQFVAT 120 (129)
Q Consensus 53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~~----------~~e~~~~~v~~ 120 (129)
+|+++|+++|+++|+|+++|+|||+|||||+||+||++.+++ +.+++|||||+++++ +-+++.+.+..
T Consensus 115 lp~~~l~~~l~~~gip~~~S~dAG~YlCN~~~Y~sl~~~~~~~~~~~~~FvHvP~~~~~~~~~~~~~s~~l~~~~~a~~~ 194 (202)
T PF01470_consen 115 LPVRALVEALREAGIPVEISNDAGRYLCNYIYYRSLHHAERRGPPIPAGFVHVPPLPEQVAEKPGAPSMSLETMVRAVRA 194 (202)
T ss_dssp S-HHHHHHHHHHTT--EEEES---SSHHHHHHHHHHHHHHHHSTTSEEEEEEE-B-GGGHTTCTTC-B--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCcccCChhhhHHHHHHHHHHHHHhhcCCCCceeEEeeCCchHhhccCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764 578999999987654 23667778888
Q ss_pred HHHHHHh
Q 033037 121 LFEAVAS 127 (129)
Q Consensus 121 li~~la~ 127 (129)
.|+++.+
T Consensus 195 ~~~~~~~ 201 (202)
T PF01470_consen 195 AIEAIVD 201 (202)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8887765
No 4
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-28 Score=191.67 Aligned_cols=106 Identities=26% Similarity=0.428 Sum_probs=91.5
Q ss_pred cccCCCCCccccchHHHHHHh------------hCCCCchhHHHHhh-hhcC-------C----------CCCCcceEEe
Q 033037 2 LKEEGLPAGVTLGSCTVLEAA------------GDGALPTLLKTLES-SISQ-------T----------NTNNEQVIWT 51 (129)
Q Consensus 2 ~~k~~lP~~~~l~s~~vl~~~------------G~a~~r~~~~t~E~-~i~~-------~----------~~~~~~~~~T 51 (129)
++.+.||+.|..... +|.+. |+|++|+. +|+|| |||. + ..+|+.+|||
T Consensus 36 V~~~~lP~~f~~s~~-~l~~~i~~~qPd~vl~iG~A~GR~~-iT~ERVAINv~DarIpDN~G~qpiDepI~~dGpaAYfs 113 (207)
T COG2039 36 VKGRILPVVFKKSID-ALVQAIAEVQPDLVLAIGQAGGRTK-ITPERVAINVDDARIPDNAGNQPIDEPIDPDGPAAYFS 113 (207)
T ss_pred EEEEEcCccHHHHHH-HHHHHHHhhCCCeEEEecccCCCCc-CChhheeeccccccCCCCCCCCcCCCccCCCCchhhhh
Confidence 467889999988544 44443 99999999 99999 5765 1 1289999999
Q ss_pred cCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhcC--CceEEEEeCCCCCC
Q 033037 52 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLFSTI 109 (129)
Q Consensus 52 ~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~~--~~~~FVHVP~~~~~ 109 (129)
+||+++|+.+++++|+|+.+|++||+|||||++|..||++.+++ .++||||||..+++
T Consensus 114 tlPvkamv~~~~~~GiPA~vS~sAGTyvCNhvmY~~l~~~~~~~~~~~~GFiHvPy~peq 173 (207)
T COG2039 114 TLPVKAMVQAIREAGIPASVSNSAGTYVCNHVMYGLLHHLAKKGPPVRAGFIHVPYLPEQ 173 (207)
T ss_pred cCcHHHHHHHHHHcCCChhhhcccchhhhHHHHHHHHHHHHHhCCCCcceeEeecCCHHH
Confidence 99999999999999999999999999999999999999998774 58999999987653
No 5
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.95 E-value=1.9e-28 Score=192.55 Aligned_cols=126 Identities=24% Similarity=0.322 Sum_probs=103.6
Q ss_pred cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C---------------CCCCcceEE
Q 033037 2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T---------------NTNNEQVIW 50 (129)
Q Consensus 2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~---------------~~~~~~~~~ 50 (129)
++++.||+.+....+.+.+.+ |++++|+. ++||+ |+|. . ..+|+..||
T Consensus 37 v~~~~LPV~~~~~~~~l~~~~~~~~Pd~vi~~G~a~gr~~-i~lEr~A~N~~d~~~pDn~G~~~~~~~i~~~~~gp~~y~ 115 (211)
T PRK13196 37 VHSALLPVEPRAAMAALSRLLDELQPSAVLLTGLAAGRPQ-VTLERVAVNVMDFSIPDNAGQTYRDTPVCTEPDAPAAYL 115 (211)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHhCCCEEEEecccCCcCc-EEEEEEEeccccCCCCCCCCCCCCCCCcccCCCCcccee
Confidence 457789999998777555444 99999998 99999 6763 0 236789999
Q ss_pred ecCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc---CCceEEEEeCCCCC--------------CChHH
Q 033037 51 TSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK---GHKSLFVHVPLFST--------------IDEDT 113 (129)
Q Consensus 51 T~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~---~~~~~FVHVP~~~~--------------~~~e~ 113 (129)
|++|+++|+++|+++|+|+++|+|||+|||||+||++|++.+++ +.+++|||||++++ ++.|.
T Consensus 116 stLpv~~l~~~l~~~gip~~iS~~AG~YlCN~v~Y~sL~~~~~~~~~~~~agFIHVP~~~~~~~~~~~~~~~~p~m~~~~ 195 (211)
T PRK13196 116 STLPLRAILAAWHDAGIPGHISNTAGLYVCNFVLYHALHQLHLRGRAEVPCGFLHVPANAQVALAVAGDRPPLPYLPQEE 195 (211)
T ss_pred cCCCHHHHHHHHHhcCCCceEccCCCceeehHHHHHHHHHHHhcCCCCCeeEEEEcCCCHHHhhhhccCCCCCCCCCHHH
Confidence 99999999999999999999999999999999999999997654 36899999998833 34566
Q ss_pred HHHHHHHHHHHHHhh
Q 033037 114 QMQFVATLFEAVAST 128 (129)
Q Consensus 114 ~~~~v~~li~~la~~ 128 (129)
+.+.+...|+.+...
T Consensus 196 ~~~~v~~~i~~~~~~ 210 (211)
T PRK13196 196 ITRAVRVAAETMAGQ 210 (211)
T ss_pred HHHHHHHHHHHHHhc
Confidence 677777777777654
No 6
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.95 E-value=2.3e-28 Score=191.84 Aligned_cols=126 Identities=22% Similarity=0.327 Sum_probs=102.2
Q ss_pred cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----C-------------CCCCcceEEec
Q 033037 2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----T-------------NTNNEQVIWTS 52 (129)
Q Consensus 2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~-------------~~~~~~~~~T~ 52 (129)
+..+.||+.+....+.+.+.+ |++++|+. +++|+ |+|. . ..+|+..|||+
T Consensus 36 v~~~~LPV~~~~~~~~l~~~l~~~~Pd~vlhlG~a~~r~~-i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~y~tt 114 (208)
T PRK13194 36 VFGRVLPVSFKRAREELEKVLDEIKPDITINLGLAPGRTH-ISVERVAVNAIDARIPDNDGEKPEDEPIVEGAPAAYFAT 114 (208)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhCCCEEEEeeccCCcce-EEEEEEEEcCCCCCCCCCCCCCCCCCcccCCCCCcccCC
Confidence 345679999888777655443 99999999 99999 6773 1 12678899999
Q ss_pred CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCCC--------------ChHHHHH
Q 033037 53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTI--------------DEDTQMQ 116 (129)
Q Consensus 53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~~--------------~~e~~~~ 116 (129)
+|+++++++|++.|+|+++|+|||+|||||+||+|||+.+++ +.+++|||||..+++ +-+.+.+
T Consensus 115 lp~~~l~~~l~~~gip~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~~~FvHVP~~~~~~~~~~~~~~~~p~~~l~~~~~ 194 (208)
T PRK13194 115 LPTREIVEELKKNGIPAVLSYSAGTYLCNYVMYLTLHHSATKGYPKMAGFIHVPYTPDQVIEKIGKGKNTPSMCLEMEIE 194 (208)
T ss_pred CCHHHHHHHHHhcCCCcEEeCCCccchhHHHHHHHHHHHHhcCCCceeEEEEcCCcHHHhhhhcccCCCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999998754 468999999965544 3355666
Q ss_pred HHHHHHHHHHhh
Q 033037 117 FVATLFEAVAST 128 (129)
Q Consensus 117 ~v~~li~~la~~ 128 (129)
.+...|+++.+.
T Consensus 195 ~~~~~~~~~~~~ 206 (208)
T PRK13194 195 AVKIAIRVALEE 206 (208)
T ss_pred HHHHHHHHHHHh
Confidence 777777776653
No 7
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=99.95 E-value=1.6e-27 Score=187.61 Aligned_cols=125 Identities=23% Similarity=0.386 Sum_probs=100.7
Q ss_pred cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----CC-------------CCCcceEEec
Q 033037 2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----TN-------------TNNEQVIWTS 52 (129)
Q Consensus 2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~~-------------~~~~~~~~T~ 52 (129)
++.+.||+.+......+.+.+ |++++|+. ++||+ |+|. .+ .+|+..|+|+
T Consensus 37 i~~~~lPV~y~~~~~~l~~~l~~~~Pd~vih~G~a~~~~~-i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~ 115 (215)
T PRK13197 37 IIKRQLPTVFGKSAEVLKEAIEEVQPDAVICIGQAGGRTD-ITPERVAINIDDARIPDNEGNQPIDEPIVEDGPAAYFST 115 (215)
T ss_pred EEEEEECCChHHHHHHHHHHHHHhCCCEEEEeccCCCCCc-EEeEeeecccCCccCCCCCCCCcCCCcccCCCCceeEcC
Confidence 456778998877555544443 99999999 99999 6763 01 2688999999
Q ss_pred CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCC----------CChHHHHHHHHH
Q 033037 53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST----------IDEDTQMQFVAT 120 (129)
Q Consensus 53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~ 120 (129)
+|+++|++++++.|+|+++|+|||+|||||+||++|++.+++ +.+++|||||++++ ++.+.+.+.+..
T Consensus 116 Lp~~~l~~~l~~~gip~~~S~dAG~YlCN~i~Y~sl~~~~~~~~~~~a~FIHvP~~~~~~~~~~~~p~~~~~~~~~av~~ 195 (215)
T PRK13197 116 LPIKAMVKAIREAGIPASVSNTAGTFVCNHVMYGLLHLLDKKYPNIRAGFIHIPYLPEQAVNKPGTPSMSLEDIVRGLEL 195 (215)
T ss_pred CCHHHHHHHHHHcCCCceeccCCCceeehHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999998653 46899999998844 334566677777
Q ss_pred HHHHHHh
Q 033037 121 LFEAVAS 127 (129)
Q Consensus 121 li~~la~ 127 (129)
+|+.+.+
T Consensus 196 ~i~~~~~ 202 (215)
T PRK13197 196 AIEAIVE 202 (215)
T ss_pred HHHHHHh
Confidence 7776643
No 8
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=99.94 E-value=4.1e-27 Score=185.01 Aligned_cols=124 Identities=26% Similarity=0.335 Sum_probs=99.6
Q ss_pred cccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----CC-------------CCCcceEEec
Q 033037 2 LKEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----TN-------------TNNEQVIWTS 52 (129)
Q Consensus 2 ~~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~~-------------~~~~~~~~T~ 52 (129)
+.++.||+.+.-....+.+.+ |++++|.. ++||+ |+|. .+ .+|+..|+|+
T Consensus 34 i~~~~lPV~~~~~~~~l~~~l~~~~Pd~vi~~G~a~g~~~-i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~tt 112 (212)
T TIGR00504 34 VVAEILPNTFFEAIEALQQAIDEIEPDIVIMLGLAPGRSM-ITVERVAINVNDARIPDNAGEQPIDEPIVPDGPAAYFAT 112 (212)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHCCCEEEEeccCCCcCc-eeeEEeEeccCcCCCCCCCCCccCCCcccCCCCceeecC
Confidence 456779999888766655544 99999998 99999 6764 11 2678899999
Q ss_pred CcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhc--CCceEEEEeCCCCCCCh----------HHHHHHHHH
Q 033037 53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTIDE----------DTQMQFVAT 120 (129)
Q Consensus 53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~--~~~~~FVHVP~~~~~~~----------e~~~~~v~~ 120 (129)
||+++|+++|+++|+|+++|+|||+|||||+||+||++.+++ +.+++|||||+++++.. +.+.+.+..
T Consensus 113 Lpv~~l~~~l~~~gip~~~S~dAG~ylCN~i~Y~sL~~~~~~~~~~~agFIHVP~~~~~~~~~~~~~~~~~~~~~~a~~~ 192 (212)
T TIGR00504 113 LPVRAMVLAMKKAGIPADVSYTAGTFVCNHLMYGLLHHLAQKGLPVRAGFIHVPYLPSQVALKHGVPSMSLDTAVAGVTI 192 (212)
T ss_pred CCHHHHHHHHHHcCCCeeEeCCCCceeeHHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999998655 36899999997766532 344455556
Q ss_pred HHHHHH
Q 033037 121 LFEAVA 126 (129)
Q Consensus 121 li~~la 126 (129)
.|+++.
T Consensus 193 ~i~~~~ 198 (212)
T TIGR00504 193 AIETAI 198 (212)
T ss_pred HHHHHH
Confidence 666553
No 9
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=99.91 E-value=2.9e-25 Score=170.99 Aligned_cols=108 Identities=27% Similarity=0.396 Sum_probs=88.9
Q ss_pred ccCCCCCccccchHHHHHHh-----------hCCCCchhHHHHhh-hhcC----CC-------------CCCcceEEecC
Q 033037 3 KEEGLPAGVTLGSCTVLEAA-----------GDGALPTLLKTLES-SISQ----TN-------------TNNEQVIWTSL 53 (129)
Q Consensus 3 ~k~~lP~~~~l~s~~vl~~~-----------G~a~~r~~~~t~E~-~i~~----~~-------------~~~~~~~~T~l 53 (129)
....||+...-..+.+-+.+ |++++++. .+||+ |+|. .+ .+++..|+|++
T Consensus 37 ~~~~lpv~y~~~~~~~~~~~~~~~pd~vlhlG~~~~~~~-i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~g~~~~~t~l 115 (194)
T cd00501 37 VGLELPVVFQKAVEVLPELIEEHKPDLVIHVGLAGGRST-ITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFSTL 115 (194)
T ss_pred EEEEcCccHHHHHHHHHHHHHHhCCCEEEEecccCCCCc-eeEEeEEEccCCCCCCCCCCCcCCCCcccCCCCCeeeecC
Confidence 34568887666555444333 99999999 99999 6664 11 26789999999
Q ss_pred cHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhcC--CceEEEEeCCCCCCCh
Q 033037 54 STEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLFSTIDE 111 (129)
Q Consensus 54 p~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~~--~~~~FVHVP~~~~~~~ 111 (129)
|+++++++++++|+++++|+|||+|||||+||+||++..+++ .+++|||||+++++..
T Consensus 116 p~~~l~~~l~~~g~~~~~S~dAG~YlCn~~~Y~sL~~~~~~~~~~~a~FvHvP~~~~~~~ 175 (194)
T cd00501 116 PVKAIVKALREAGIPARVSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVPYSPEQVA 175 (194)
T ss_pred CHHHHHHHHHhcCCCceEcCCCCceeeHHHHHHHHHHHhccCCCceeceeecCCCHHHhc
Confidence 999999999999999999999999999999999999986553 6899999999987643
No 10
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1e-17 Score=132.12 Aligned_cols=123 Identities=29% Similarity=0.530 Sum_probs=100.0
Q ss_pred cccCCCCCccccchHHHHHHhhCCCCchhHHHHhhhhcCCC----------------------------------CCCc-
Q 033037 2 LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTN----------------------------------TNNE- 46 (129)
Q Consensus 2 ~~k~~lP~~~~l~s~~vl~~~G~a~~r~~~~t~E~~i~~~~----------------------------------~~~~- 46 (129)
.++++.+.++...+|+.++++|+...-..+..++++|+..+ .+++
T Consensus 46 ~k~~~~s~~l~~~~~~sy~~v~~~i~e~~~~~~~~aIhl~sh~~knti~i~~~af~~gy~~~d~~g~vp~~nkv~~~~~d 125 (213)
T KOG4755|consen 46 VKKGGVSKYLCFKMCTSYETVDEIILELWEEHLQSAIHLGSHSQKNTIQIEQSAFSSGYTQKDKCGKVPEGNKVKCDGPD 125 (213)
T ss_pred HHcCCceecceecceechhhHhHHHHHhhccceeEEEEecccccCcEEEEEEecccCCccchhhcccccCCceeEecccc
Confidence 35666899999999999999998888888777776664310 0233
Q ss_pred ceEEecCcHHHHHHHHHhc---------CCceEecCCCChhhhhHHHHHHHHHhhhcCCceEEEEeCCCCC-CChHHHHH
Q 033037 47 QVIWTSLSTEAILKFLKKK---------GFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFST-IDEDTQMQ 116 (129)
Q Consensus 47 ~~~~T~lp~~~l~~~l~~~---------g~~~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~-~~~e~~~~ 116 (129)
...|+.++...+++...+. |+++.+|+|||||+|||+||+.|+.. +.+.+||||||+.. ...|+|++
T Consensus 126 ~~~~s~i~c~~vv~~v~e~~~~~~~~~~gl~V~~s~dagR~lc~y~y~~fl~q~---~~rslfv~VPpl~~~~tke~~~~ 202 (213)
T KOG4755|consen 126 TGGRSCINCEIVVKDVNERCASDGQKFGGLEVEISEDAGRYLCGYVYYSFLKQK---PCRSLFVHVPPLEGACTKEVQMR 202 (213)
T ss_pred ccccccccHHHHHHhhhhhhhhccccCCceEEEEcCcccceechhhhhhhhhhc---ccccceEecCccccccCHHHHHH
Confidence 4457999998888877664 69999999999999999999977765 78999999998755 78999999
Q ss_pred HHHHHHHHHHhhC
Q 033037 117 FVATLFEAVASTC 129 (129)
Q Consensus 117 ~v~~li~~la~~~ 129 (129)
+++++| +++.|
T Consensus 203 ~i~~il--~~~~c 213 (213)
T KOG4755|consen 203 VIRSIL--FLSYC 213 (213)
T ss_pred HHHHHH--HHhhC
Confidence 999999 88776
No 11
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=70.92 E-value=30 Score=24.99 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=45.4
Q ss_pred cHHHHHHHHHhcCCceEecCCCChh---------hh------hHHHHHHHHHhhhcCCceEEEEeC---CCCCCChHHHH
Q 033037 54 STEAILKFLKKKGFDVVISDDAGRF---------VC------NYVYYHSLRFAEQKGHKSLFVHVP---LFSTIDEDTQM 115 (129)
Q Consensus 54 p~~~l~~~l~~~g~~~~~S~dAG~y---------lC------N~iyY~sL~~~~~~~~~~~FVHVP---~~~~~~~e~~~ 115 (129)
.++++.+.+++.|+.+....-.... -. ...+...+..++.-+.+.+-+|.+ .......+...
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~ 107 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENW 107 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHH
Confidence 3678999999999983321111111 11 235556666666668999999988 55555566666
Q ss_pred HHHHHHHHHHHh
Q 033037 116 QFVATLFEAVAS 127 (129)
Q Consensus 116 ~~v~~li~~la~ 127 (129)
+.+.+-++.|++
T Consensus 108 ~~~~~~l~~l~~ 119 (213)
T PF01261_consen 108 ERLAENLRELAE 119 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666665554
No 12
>PRK10667 Hha toxicity attenuator; Provisional
Probab=70.13 E-value=6.1 Score=29.01 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHHhhhcCCceEEEEeCCCCCCChHHHHHHHHHHHHHHHhh
Q 033037 77 RFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 77 ~ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~~v~~li~~la~~ 128 (129)
+|+|+.+|=.++.-+. +...++|+=|-.. ...| +-+||+.||.+
T Consensus 15 kyLCe~L~~e~i~~L~--~s~hgWvNDptS~---~nlq---LNeLIEHIa~f 58 (122)
T PRK10667 15 KFLCETLYHECLANLG--ESNHGWVNDPTSA---VNLQ---LNELIEHIATF 58 (122)
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCcCCCchH---hhhh---HHHHHHHHHHH
Confidence 5999999999999984 4567888776544 1111 45677777754
No 13
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=66.50 E-value=8.2 Score=28.39 Aligned_cols=44 Identities=18% Similarity=0.361 Sum_probs=31.1
Q ss_pred hhhhhHHHHHHHHHhhhcCCceEEEEeCCCCCCChHHHHHHHHHHHHHHHhh
Q 033037 77 RFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 77 ~ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~~v~~li~~la~~ 128 (129)
+|+||-+|=.++.-+. +...++|+=|-.. ...| +-+||+.||++
T Consensus 15 k~LCe~L~~e~~~~L~--~s~~gWvNDptS~---~nlq---LNeLIEHIA~F 58 (122)
T PF10757_consen 15 KYLCESLYDEAIATLG--DSHHGWVNDPTSA---VNLQ---LNELIEHIAAF 58 (122)
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCcCCCchh---hhhh---HHHHHHHHHHH
Confidence 5999999999999884 4677888877544 1111 45677777754
No 14
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=64.70 E-value=46 Score=28.16 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=50.7
Q ss_pred CCcceEEecCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhh-------cCCceEEEEeCCCCCCChHHHHH
Q 033037 44 NNEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQ-------KGHKSLFVHVPLFSTIDEDTQMQ 116 (129)
Q Consensus 44 ~~~~~~~T~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~-------~~~~~~FVHVP~~~~~~~e~~~~ 116 (129)
.-+..=|..=.+.+.++.|.++|++--+---.| |+++++ ..|..+.. ..+-.-|.++|.++.- ..-.+
T Consensus 234 ~~G~~~WL~P~t~~~l~~L~~~g~k~iiv~pig-FvsDhl--ETL~Eid~e~~e~~~~~Gg~~y~rip~lN~~--p~fi~ 308 (320)
T COG0276 234 RFGPEPWLQPYTDDLLEELGEKGVKKIIVVPIG-FVSDHL--ETLYEIDHEYRELAEEAGGKKYVRIPCLNDS--PEFID 308 (320)
T ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCeEEEECCc-hhhhhH--HHHHHHHHHHHHHHHHhCCccEEecCCCCCC--HHHHH
Confidence 455666888899999999999999877777777 877765 33333321 1223459999999832 23345
Q ss_pred HHHHHHHH
Q 033037 117 FVATLFEA 124 (129)
Q Consensus 117 ~v~~li~~ 124 (129)
+++++++.
T Consensus 309 ~la~lv~~ 316 (320)
T COG0276 309 ALADLVRE 316 (320)
T ss_pred HHHHHHHH
Confidence 55555554
No 15
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=64.26 E-value=7.1 Score=29.20 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=22.9
Q ss_pred cCCCChhhhhHHHHHHHHHhhhcCCceEEEE
Q 033037 72 SDDAGRFVCNYVYYHSLRFAEQKGHKSLFVH 102 (129)
Q Consensus 72 S~dAG~ylCN~iyY~sL~~~~~~~~~~~FVH 102 (129)
=+.||.|+.|-.||++|-.......-++|++
T Consensus 41 IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~ 71 (143)
T PF10662_consen 41 IDTPGEYIENPRFYHALIVTAQDADVVLLLQ 71 (143)
T ss_pred EECChhheeCHHHHHHHHHHHhhCCEEEEEe
Confidence 4789999999999999987654333344444
No 16
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=56.17 E-value=16 Score=26.36 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHhhhc----CCceEEEEeCCCCCCChHHHHHH
Q 033037 78 FVCNYVYYHSLRFAEQK----GHKSLFVHVPLFSTIDEDTQMQF 117 (129)
Q Consensus 78 ylCN~iyY~sL~~~~~~----~~~~~FVHVP~~~~~~~e~~~~~ 117 (129)
|+||+..|.++..+... +..+--|.||....++++...+.
T Consensus 5 F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~A 48 (124)
T PF02662_consen 5 FCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRA 48 (124)
T ss_pred EEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHH
Confidence 89999999999887532 45689999999999988654433
No 17
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=51.68 E-value=83 Score=22.18 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=25.6
Q ss_pred eEEecCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHH-hhhcCCceEEEEeCCCCCC
Q 033037 48 VIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRF-AEQKGHKSLFVHVPLFSTI 109 (129)
Q Consensus 48 ~~~T~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~-~~~~~~~~~FVHVP~~~~~ 109 (129)
...+.-|-.+=++.++++|+..-+.+-+-.=-.+.-.+..+.. ++..+ --|+|+|.....
T Consensus 9 ~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~G--l~y~~iPv~~~~ 69 (110)
T PF04273_consen 9 LSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALG--LQYVHIPVDGGA 69 (110)
T ss_dssp EEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT---EEEE----TTT
T ss_pred eEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcC--CeEEEeecCCCC
Confidence 3446666777788999999998776532211111222222322 22223 359999988653
No 18
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=43.81 E-value=1.6e+02 Score=26.96 Aligned_cols=119 Identities=19% Similarity=0.170 Sum_probs=70.9
Q ss_pred CCCCCccccchHHHHHHhhCCCCchhHHHHhhhhcCCCCCCcceEEecCcHHHHHHHHHhcCCce-EecCCCChhhhhHH
Q 033037 5 EGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWTSLSTEAILKFLKKKGFDV-VISDDAGRFVCNYV 83 (129)
Q Consensus 5 ~~lP~~~~l~s~~vl~~~G~a~~r~~~~t~E~~i~~~~~~~~~~~~T~lp~~~l~~~l~~~g~~~-~~S~dAG~ylCN~i 83 (129)
=|||.+-+.|...|= ..-.|++|..|+.+-+ |+..-.+| .++.+-.+.++++..+..-+.. -+=.|-|-.-=---
T Consensus 71 VGLP~~~qmGNSEVG-HlniGaGRiv~Q~l~r-I~~ai~~g--~~~~n~~l~~~~~~~~~~~lHl~GL~SdGGVHSh~~H 146 (558)
T PLN02538 71 VGLPSDDDMGNSEVG-HNALGAGRIFAQGAKL-VDLALASG--KIFEGEGFKYIKEAFATGTLHLIGLLSDGGVHSRLDQ 146 (558)
T ss_pred CCCCCCCCCcchHHh-hhhhccceeecchhHH-HHHHHhcC--CcccCHHHHHHHHHhcCCeeEEEEeccCCCcccHHHH
Confidence 378888878877754 7778999999988776 22100122 3556656667777663221221 12233343322333
Q ss_pred HHHHHHHhhhcCCceEEEEeCCCCCC-ChHHHHHHHHHHHHHHHh
Q 033037 84 YYHSLRFAEQKGHKSLFVHVPLFSTI-DEDTQMQFVATLFEAVAS 127 (129)
Q Consensus 84 yY~sL~~~~~~~~~~~FVHVP~~~~~-~~e~~~~~v~~li~~la~ 127 (129)
++..+..+.+++.+-+|||.=.-.+- ++..-..++..|.+.|++
T Consensus 147 l~al~~~a~~~gv~~v~vH~f~DGRDt~p~S~~~yl~~l~~~l~~ 191 (558)
T PLN02538 147 LQLLLKGAAERGAKRIRVHVLTDGRDVPDGSSVGFVETLEKDLAE 191 (558)
T ss_pred HHHHHHHHHHcCCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHH
Confidence 45566666777888999998555442 344566777777777654
No 19
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=42.01 E-value=48 Score=20.05 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhh
Q 033037 100 FVHVPLFSTIDEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 100 FVHVP~~~~~~~e~~~~~v~~li~~la~~ 128 (129)
||||=.....+.|+.++++.++-+.+++.
T Consensus 3 ~i~i~~~~Grs~eqk~~l~~~it~~l~~~ 31 (61)
T PRK02220 3 YVHIKLIEGRTEEQLKALVKDVTAAVSKN 31 (61)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 56665455567788888888888888764
No 20
>PRK00035 hemH ferrochelatase; Reviewed
Probab=41.90 E-value=1.8e+02 Score=23.87 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=45.2
Q ss_pred EEecCcHHHHHHHHHhcCCceEecCCCChhhhhH--HHHHHHHHhhhc---CCceEEEEeCCCCCCChHHHHHHHHHHHH
Q 033037 49 IWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNY--VYYHSLRFAEQK---GHKSLFVHVPLFSTIDEDTQMQFVATLFE 123 (129)
Q Consensus 49 ~~T~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~--iyY~sL~~~~~~---~~~~~FVHVP~~~~~~~e~~~~~v~~li~ 123 (129)
=|+.=.+++.++.|.+.|++-.+=.-.| |++++ +.|..-...++. .+-.-|+.+|.++.- +.-.+++.++++
T Consensus 244 ~Wl~P~~~~~l~~l~~~g~k~V~v~P~~-Fv~D~lEtl~ei~~e~~~~~~~~G~~~~~~~~~ln~~--~~~i~~l~~~v~ 320 (333)
T PRK00035 244 PWLEPYTDDTLEELAEKGVKKVVVVPPG-FVSDHLETLEEIDIEYREIAEEAGGEEFRRIPCLNDS--PEFIEALADLVR 320 (333)
T ss_pred ccCCCCHHHHHHHHHHcCCCeEEEECCe-eeccchhHHHHHHHHHHHHHHHcCCceEEECCCCCCC--HHHHHHHHHHHH
Confidence 5788899999999999998744444456 88888 666433222111 122258999998832 233444444444
Q ss_pred H
Q 033037 124 A 124 (129)
Q Consensus 124 ~ 124 (129)
.
T Consensus 321 ~ 321 (333)
T PRK00035 321 E 321 (333)
T ss_pred H
Confidence 3
No 21
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=38.22 E-value=1.1e+02 Score=23.88 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=50.2
Q ss_pred ceEEecCcHH---HHHHHHHhcCCceEecCCCCh---hhhhHHHHHHHHHhhhcCCc----eEE---EEeCCCCCCChHH
Q 033037 47 QVIWTSLSTE---AILKFLKKKGFDVVISDDAGR---FVCNYVYYHSLRFAEQKGHK----SLF---VHVPLFSTIDEDT 113 (129)
Q Consensus 47 ~~~~T~lp~~---~l~~~l~~~g~~~~~S~dAG~---ylCN~iyY~sL~~~~~~~~~----~~F---VHVP~~~~~~~e~ 113 (129)
..+++.++-+ +++..|.++|++.++++|-+. +|=.--++.+...+...+.+ .+| ..-..+..-+.+.
T Consensus 29 ~~L~~~l~~~da~~i~~~L~~~gI~y~~~~~g~~~~I~Vp~~~~~~ar~~La~~glp~~~~~g~~~~~~~~~~~~T~~~~ 108 (206)
T PF01514_consen 29 VVLYSGLDEEDANEIVAALDENGIPYKLSDDGGTWTILVPEDQVARARMLLASQGLPKSGFSGFEELFDNSSFGTTDFEE 108 (206)
T ss_dssp EEEEEEE-HHHHHHHHHHHHHTT--EEEEE-TTSEEEEEEGGGHHHHHHHHHHTT-S------CCHHTTT-S---SHHHH
T ss_pred eecccCCCHHHHHHHHHHHHHCCCCcEecCCCCeeEEEeCHHHHHHHHHHHHHcCCCCCCCCCHHHHhccCCCCCCHHHH
Confidence 5566777654 699999999999999999888 99999899888777665432 233 2223344334455
Q ss_pred HHHHHHHHHHHHHh
Q 033037 114 QMQFVATLFEAVAS 127 (129)
Q Consensus 114 ~~~~v~~li~~la~ 127 (129)
+.+....+-.+|+.
T Consensus 109 ~~~~~~ale~eL~~ 122 (206)
T PF01514_consen 109 KVNYQRALEGELER 122 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666766666664
No 22
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=37.44 E-value=86 Score=19.53 Aligned_cols=51 Identities=41% Similarity=0.524 Sum_probs=33.1
Q ss_pred ecCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhhhcCCceEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 033037 51 TSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAS 127 (129)
Q Consensus 51 T~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~~v~~li~~la~ 127 (129)
..++.+++.+.|+..|+++..+.+.+ .+-|.+|+.. .+-.. -.|+++.+|.
T Consensus 17 ~~i~~~ei~~~L~~lg~~~~~~~~~~---------------------~~~v~~P~~R-~Di~~----~~DliEei~r 67 (71)
T smart00874 17 LDLSAEEIEEILKRLGFEVEVSGDDD---------------------TLEVTVPSYR-FDILI----EADLIEEVAR 67 (71)
T ss_pred CCCCHHHHHHHHHHCCCeEEecCCCC---------------------eEEEECCCCc-cccCc----ccHHHHHHHH
Confidence 45778899999999999886643322 2668899775 22211 2556666654
No 23
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=36.53 E-value=67 Score=19.44 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=18.6
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhh
Q 033037 100 FVHVPLFSTIDEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 100 FVHVP~~~~~~~e~~~~~v~~li~~la~~ 128 (129)
-||+.. ...+.|+..+++..+-+.+++.
T Consensus 4 ~i~i~~-~grt~eqK~~l~~~it~~l~~~ 31 (63)
T TIGR00013 4 NIYILK-EGRTDEQKRQLIEGVTEAMAET 31 (63)
T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 344441 3456777788888888888764
No 24
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal
Probab=35.98 E-value=39 Score=25.43 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=32.5
Q ss_pred CcceEEecCcHHHHHHHHHhcCCceEecCCCChhhhhHH
Q 033037 45 NEQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYV 83 (129)
Q Consensus 45 ~~~~~~T~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~i 83 (129)
.+..+--.+.+.++-+.|.+.|+.++++ ..|.-+||-.
T Consensus 92 ~~~~~iGd~rL~~lk~~L~~~g~~aEF~-g~G~Lv~~~~ 129 (161)
T PF13299_consen 92 HQSLFIGDLRLSDLKQALQSAGIQAEFR-GEGVLVCNGG 129 (161)
T ss_pred CCceecCcccHHHHHHHHHHCCCceEEe-eCCeEEECCE
Confidence 4455568899999999999999999999 8888899864
No 25
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=34.35 E-value=68 Score=19.74 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=19.6
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHHHhh
Q 033037 100 FVHVPLFSTIDEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 100 FVHVP~~~~~~~e~~~~~v~~li~~la~~ 128 (129)
||||=.....+.|+.++++..+-+++++.
T Consensus 3 ~v~i~l~~grt~eqk~~l~~~it~~l~~~ 31 (64)
T PRK01964 3 IVQIQLLEGRPEEKIKNLIREVTEAISAT 31 (64)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 44444444456788888888888887764
No 26
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=34.17 E-value=92 Score=23.78 Aligned_cols=48 Identities=19% Similarity=0.097 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhcCCc---eEecCCCChhhhhHHHHHHHHHhhhcCCceEEEEe
Q 033037 54 STEAILKFLKKKGFD---VVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHV 103 (129)
Q Consensus 54 p~~~l~~~l~~~g~~---~~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~FVHV 103 (129)
++.+.++.+++.+.. +-+||+||+.- +.-+-++-...+.-+.+ +|.|-
T Consensus 63 ~~~~~~~~l~~~~~~~~v~IvSNsaGs~~-d~~~~~a~~~~~~lgIp-vl~h~ 113 (168)
T PF09419_consen 63 EYAEWLNELKKQFGKDRVLIVSNSAGSSD-DPDGERAEALEKALGIP-VLRHR 113 (168)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCccc-CccHHHHHHHHHhhCCc-EEEeC
Confidence 455678888888776 78999999876 43333333333222333 55663
No 27
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=33.54 E-value=2.4e+02 Score=22.91 Aligned_cols=83 Identities=7% Similarity=0.137 Sum_probs=54.3
Q ss_pred cceEEecCcHH---HHHHHHHhcCCceEecCCCC----hhhhhHHHHHHHHHhhhcCC----ceEE-EEeCC--CCCCCh
Q 033037 46 EQVIWTSLSTE---AILKFLKKKGFDVVISDDAG----RFVCNYVYYHSLRFAEQKGH----KSLF-VHVPL--FSTIDE 111 (129)
Q Consensus 46 ~~~~~T~lp~~---~l~~~l~~~g~~~~~S~dAG----~ylCN~iyY~sL~~~~~~~~----~~~F-VHVP~--~~~~~~ 111 (129)
...++++++-+ +++..|.++||+.+.+++-+ -+|=.-=++.+...+...+- ..+| --.|. +-.-+.
T Consensus 20 ~~~Lys~L~~~dAneIv~~L~~~gI~y~~~~~gk~G~tI~V~~~d~~~Ar~~La~~GLP~~~~~~~~eif~~~~l~sS~~ 99 (252)
T PRK15324 20 DKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPADSLVSSPR 99 (252)
T ss_pred eehhhcCCCHHHHHHHHHHHHHCCCCeEeccCCCCceEEEEcHHHHHHHHHHHHHcCCCCCCCCCHHHHccCCCCCCCHH
Confidence 34577888775 69999999999999987653 46777778888877765542 2232 22232 222234
Q ss_pred HHHHHHHHHHHHHHHhh
Q 033037 112 DTQMQFVATLFEAVAST 128 (129)
Q Consensus 112 e~~~~~v~~li~~la~~ 128 (129)
+.+.+....+-.+|+++
T Consensus 100 ~Ek~r~~~ALe~ELarT 116 (252)
T PRK15324 100 AEKARLYSAIEQRLEQS 116 (252)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55667777777777653
No 28
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=33.00 E-value=52 Score=23.14 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHH
Q 033037 99 LFVHVPLFSTIDEDTQMQFVATLFE 123 (129)
Q Consensus 99 ~FVHVP~~~~~~~e~~~~~v~~li~ 123 (129)
+=--||.|..+++.+|++++..-+|
T Consensus 30 Lt~~vPgF~~ls~sKqRRLi~~ALE 54 (92)
T PF10330_consen 30 LTTSVPGFSDLSPSKQRRLIMAALE 54 (92)
T ss_pred HhccCCCcccCCHHHHHHHHHHHHh
Confidence 3446899999999999999887776
No 29
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=32.67 E-value=80 Score=19.38 Aligned_cols=30 Identities=7% Similarity=0.034 Sum_probs=19.9
Q ss_pred ceEEEEeCCCCCCChHHHHHHHHHHHHHHHhh
Q 033037 97 KSLFVHVPLFSTIDEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 97 ~~~FVHVP~~~~~~~e~~~~~v~~li~~la~~ 128 (129)
|.+.|++.+ ..+.|+..+++..+-+++++.
T Consensus 2 P~i~i~~~~--Grs~EqK~~L~~~it~a~~~~ 31 (60)
T PRK02289 2 PFVRIDLFE--GRSQEQKNALAREVTEVVSRI 31 (60)
T ss_pred CEEEEEECC--CCCHHHHHHHHHHHHHHHHHH
Confidence 344555544 456777778888888887764
No 30
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=30.95 E-value=91 Score=24.44 Aligned_cols=27 Identities=22% Similarity=0.620 Sum_probs=18.1
Q ss_pred CCceEEEEeCCCCCCC-hHHHHHHHHHH
Q 033037 95 GHKSLFVHVPLFSTID-EDTQMQFVATL 121 (129)
Q Consensus 95 ~~~~~FVHVP~~~~~~-~e~~~~~v~~l 121 (129)
+.+-+||||-...... .|...+|+..-
T Consensus 47 ~gK~vfiHvDLv~Gl~~~e~~i~fi~~~ 74 (181)
T COG1954 47 RGKTVFIHVDLVEGLSNDEVAIEFIKEV 74 (181)
T ss_pred CCcEEEEEeHHhcccCCchHHHHHHHHh
Confidence 5678899998877754 44555665543
No 31
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=30.42 E-value=97 Score=18.25 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=18.0
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHHHHHhh
Q 033037 99 LFVHVPLFSTIDEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 99 ~FVHVP~~~~~~~e~~~~~v~~li~~la~~ 128 (129)
+-|++.. ..+.|+.++++.++-+.+++.
T Consensus 3 i~i~~~~--grt~eqk~~l~~~i~~~l~~~ 30 (58)
T cd00491 3 VQIYILE--GRTDEQKRELIERVTEAVSEI 30 (58)
T ss_pred EEEEEcC--CCCHHHHHHHHHHHHHHHHHH
Confidence 3344443 345777778888888877653
No 32
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=29.62 E-value=49 Score=26.11 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=21.6
Q ss_pred ecCcHHHHHHHHHhcCCceEecCCCC
Q 033037 51 TSLSTEAILKFLKKKGFDVVISDDAG 76 (129)
Q Consensus 51 T~lp~~~l~~~l~~~g~~~~~S~dAG 76 (129)
...|..++++..++.|++++++.||=
T Consensus 214 ~~yP~~~il~~~~~~g~~itlgSDAH 239 (253)
T TIGR01856 214 EAYPSKELLNLAKELGIPLVLGSDAH 239 (253)
T ss_pred CCCCCHHHHHHHHHcCCCEEecCCCC
Confidence 45677889999999999999998873
No 33
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=29.42 E-value=1e+02 Score=18.53 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=18.6
Q ss_pred eEEEEeCCCCCCChHHHHHHHHHHHHHHHhh
Q 033037 98 SLFVHVPLFSTIDEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 98 ~~FVHVP~~~~~~~e~~~~~v~~li~~la~~ 128 (129)
.+=||++. ..+.|+..++...+-+.+.+.
T Consensus 3 ~i~I~~~~--grs~eqk~~l~~~it~~l~~~ 31 (62)
T PRK00745 3 TFHIELFE--GRTVEQKRKLVEEITRVTVET 31 (62)
T ss_pred EEEEEEcC--CCCHHHHHHHHHHHHHHHHHH
Confidence 34455444 346777778877777777654
No 34
>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.
Probab=28.93 E-value=95 Score=25.55 Aligned_cols=49 Identities=12% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCcceEEecCcHHHHHHHHHhcCC--ceEecCCCC--hhhh---hHHHHHHHHHhhh
Q 033037 44 NNEQVIWTSLSTEAILKFLKKKGF--DVVISDDAG--RFVC---NYVYYHSLRFAEQ 93 (129)
Q Consensus 44 ~~~~~~~T~lp~~~l~~~l~~~g~--~~~~S~dAG--~ylC---N~iyY~sL~~~~~ 93 (129)
..|+.-+..- +++|.+.+++.|+ |+.+...+| .|+- .+.=|+++..+..
T Consensus 21 ~qPR~~fd~~-l~eLa~SIre~Gl~qPI~Vr~~p~~~~Yii~~GG~rRl~AlkeL~~ 76 (258)
T TIGR03764 21 DNPRTTRNPK-YDEIKASIRERGLDQPPKVTRRPGESDYIIRNGGNTRLQILKELWQ 76 (258)
T ss_pred CCCCCCCCHH-HHHHHHHHHHhCCcCCeEEEecCCCCcEEEeeCccHHHHHHHHHHH
Confidence 5555444433 8899999999996 555554332 2766 4667888877644
No 35
>PRK08123 histidinol-phosphatase; Reviewed
Probab=28.07 E-value=62 Score=25.79 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.7
Q ss_pred ecCcHHHHHHHHHhcCCceEecCCCC
Q 033037 51 TSLSTEAILKFLKKKGFDVVISDDAG 76 (129)
Q Consensus 51 T~lp~~~l~~~l~~~g~~~~~S~dAG 76 (129)
...|...+++..++.|.+++++.||=
T Consensus 227 ~~yP~~~il~~~~e~g~~itlgSDAH 252 (270)
T PRK08123 227 EPYPPGEIITLAKKLGIPLVYGSDAH 252 (270)
T ss_pred CCCCcHHHHHHHHHcCCCEEEeCCCC
Confidence 46888999999999999999999883
No 36
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=27.26 E-value=2.1e+02 Score=19.50 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=23.1
Q ss_pred ceEEecCcHHHHHHHHHhcCCceEecCCCChh
Q 033037 47 QVIWTSLSTEAILKFLKKKGFDVVISDDAGRF 78 (129)
Q Consensus 47 ~~~~T~lp~~~l~~~l~~~g~~~~~S~dAG~y 78 (129)
..|..+.|...-.+.|++.|+..-+|-....+
T Consensus 8 ~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~ 39 (139)
T cd00127 8 GLYLGSYPAASDKELLKKLGITHVLNVAKEVP 39 (139)
T ss_pred CeEECChhHhcCHHHHHHcCCCEEEEcccCCC
Confidence 44556677766677888899998888666554
No 37
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=27.17 E-value=42 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=26.8
Q ss_pred CCcceEE--ecCcHHHHHHHHHhcCCceEecCCCC
Q 033037 44 NNEQVIW--TSLSTEAILKFLKKKGFDVVISDDAG 76 (129)
Q Consensus 44 ~~~~~~~--T~lp~~~l~~~l~~~g~~~~~S~dAG 76 (129)
..+-.|| .++.+-+.++.++++|+++..+.|||
T Consensus 247 ~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAG 281 (305)
T TIGR01240 247 FPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAG 281 (305)
T ss_pred CCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 3345666 45666789999999999999999999
No 38
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=27.05 E-value=13 Score=22.14 Aligned_cols=9 Identities=33% Similarity=1.084 Sum_probs=7.6
Q ss_pred CCCChhhhh
Q 033037 73 DDAGRFVCN 81 (129)
Q Consensus 73 ~dAG~ylCN 81 (129)
.|+|.|.|.
T Consensus 55 ~d~G~Y~C~ 63 (64)
T PF00047_consen 55 EDSGTYTCV 63 (64)
T ss_dssp GGTEEEEEE
T ss_pred HHCEEEEEE
Confidence 599999994
No 39
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=26.69 E-value=1.1e+02 Score=21.15 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.4
Q ss_pred CCceEEEEeCCCCCCChHHHHHHHHHHHHHHHhh
Q 033037 95 GHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 95 ~~~~~FVHVP~~~~~~~e~~~~~v~~li~~la~~ 128 (129)
..++.||||=.....+.|.-.++..++-+.|++.
T Consensus 55 ~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~ 88 (116)
T PTZ00397 55 HDGCCFVRVTSIGGISRSNNSSIAAAITKILASH 88 (116)
T ss_pred CCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 4599999999888888888788877777777664
No 40
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=25.95 E-value=3.3e+02 Score=21.49 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCceEec------CCCChh---hh-hHHHHHHHHHhhhcCCceEEEEeCCCCC
Q 033037 55 TEAILKFLKKKGFDVVIS------DDAGRF---VC-NYVYYHSLRFAEQKGHKSLFVHVPLFST 108 (129)
Q Consensus 55 ~~~l~~~l~~~g~~~~~S------~dAG~y---lC-N~iyY~sL~~~~~~~~~~~FVHVP~~~~ 108 (129)
++++.+.|.++|+|..++ +..+.+ +. +--|-..|+..+++ +-.+++|-+--..
T Consensus 18 l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~-Gg~I~lHGYtHq~ 80 (243)
T PF10096_consen 18 LKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQAR-GGEIVLHGYTHQY 80 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhc-CCEEEEEecceec
Confidence 457888899999998777 333444 55 55677888888754 4456778775443
No 41
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=25.87 E-value=2.1e+02 Score=20.81 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHhcCCce---EecCCCChhhhhHHHHHHHHHhhhcCCceEEEE
Q 033037 53 LSTEAILKFLKKKGFDV---VISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVH 102 (129)
Q Consensus 53 lp~~~l~~~l~~~g~~~---~~S~dAG~ylCN~iyY~sL~~~~~~~~~~~FVH 102 (129)
+-+...++.|+++|+++ .++.+|-.|+=|-.=...|...-...-|..+|.
T Consensus 27 ~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlVd 79 (123)
T PF06953_consen 27 VRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLVD 79 (123)
T ss_dssp HHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEET
T ss_pred HHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEEC
Confidence 45668899999999986 488999999999988888875432234555553
No 42
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=25.81 E-value=39 Score=21.83 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHhcCCceEecCCCChhhhhHHHH
Q 033037 53 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYY 85 (129)
Q Consensus 53 lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY 85 (129)
.-++++.+++.+.|+...++.++=.|+++.-|-
T Consensus 12 ~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~ 44 (81)
T PF10431_consen 12 LQLKKLNERLKEKGIELEFDDAVVDYLAEKGYD 44 (81)
T ss_dssp SHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcc
Confidence 346788999999999999999999999987644
No 43
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=24.57 E-value=92 Score=19.98 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=33.8
Q ss_pred cCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhh
Q 033037 52 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAE 92 (129)
Q Consensus 52 ~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~ 92 (129)
.+|.+.+-+-.+..|+. .+|+|+-.-+...+=|.....++
T Consensus 2 ~~p~~~i~ria~~~Gi~-ris~~a~~~l~~~~e~rl~~i~~ 41 (65)
T smart00803 2 WLPKETIKDVAESLGIG-NLSDEAAKLLAEDVEYRIKEIVQ 41 (65)
T ss_pred CCCHHHHHHHHHHCCCc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888889998 89999999999998888876654
No 44
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=24.57 E-value=23 Score=23.17 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=9.4
Q ss_pred CCCChhhhhHH
Q 033037 73 DDAGRFVCNYV 83 (129)
Q Consensus 73 ~dAG~ylCN~i 83 (129)
.|+|.|.|...
T Consensus 65 ~D~G~Y~C~A~ 75 (90)
T cd04974 65 DDAGEYTCLAG 75 (90)
T ss_pred ccCcEEEEEee
Confidence 79999999754
No 45
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=24.49 E-value=89 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred ecCCCChhhhhHHHHHHHHHhh
Q 033037 71 ISDDAGRFVCNYVYYHSLRFAE 92 (129)
Q Consensus 71 ~S~dAG~ylCN~iyY~sL~~~~ 92 (129)
.++.||.|+-|--+|++|-...
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~ 62 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTL 62 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHh
Confidence 5789999999999999997754
No 46
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=24.09 E-value=18 Score=23.79 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.8
Q ss_pred CCCChhhhhHHH
Q 033037 73 DDAGRFVCNYVY 84 (129)
Q Consensus 73 ~dAG~ylCN~iy 84 (129)
.|+|+|.|....
T Consensus 75 ~D~G~Y~C~v~~ 86 (100)
T cd05713 75 SDEGLYTCFFQS 86 (100)
T ss_pred hhCEEEEEEEec
Confidence 789999997543
No 47
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=23.96 E-value=16 Score=22.31 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=8.8
Q ss_pred CCCChhhhhH
Q 033037 73 DDAGRFVCNY 82 (129)
Q Consensus 73 ~dAG~ylCN~ 82 (129)
.|+|.|.|..
T Consensus 45 ~D~G~Y~C~a 54 (69)
T cd05725 45 GDEGSYTCEA 54 (69)
T ss_pred hHCEEEEEEE
Confidence 7999999975
No 48
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]
Probab=23.84 E-value=90 Score=25.25 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=31.5
Q ss_pred ecCCCChhhhhHHHHHHHHHhhhcCCceEEEEeCCCCCCChHHHHHHHHHHHHHHHh
Q 033037 71 ISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAS 127 (129)
Q Consensus 71 ~S~dAG~ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~~v~~li~~la~ 127 (129)
=+.|.|-+||-++-=-+-+..+. +... |+++...--.+..++.+.+||..|..
T Consensus 164 NgyDCG~hV~~~t~~l~~~~~~~-~~~~---~~~~~~~~~i~~lr~~l~~LI~slg~ 216 (223)
T KOG3246|consen 164 NGYDCGLHVCCNTRVLAERLLRC-PYAT---SSQLLVVDLIKALREELLDLIQSLGS 216 (223)
T ss_pred cCCchhHHHHHHHHHHHHHHhcc-cccc---ccchhhHHHHHHHHHHHHHHHHHhCc
Confidence 36889999998764333333322 2222 55555422234567788888888763
No 49
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=23.55 E-value=2.4e+02 Score=21.49 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=14.6
Q ss_pred CceEEEEeCCCCCCChHHHHHHH
Q 033037 96 HKSLFVHVPLFSTIDEDTQMQFV 118 (129)
Q Consensus 96 ~~~~FVHVP~~~~~~~e~~~~~v 118 (129)
...+.|++|+++ +|...+++
T Consensus 91 g~~iri~iP~lT---~E~R~~lv 110 (179)
T cd00520 91 GAVIRVNLPPLT---EERRKELV 110 (179)
T ss_pred CCEEEecCCCCC---HHHHHHHH
Confidence 458999999999 66554443
No 50
>PRK07328 histidinol-phosphatase; Provisional
Probab=23.50 E-value=78 Score=25.11 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=20.1
Q ss_pred ecCcHHHHHHHHHhcCCceEecCCCC
Q 033037 51 TSLSTEAILKFLKKKGFDVVISDDAG 76 (129)
Q Consensus 51 T~lp~~~l~~~l~~~g~~~~~S~dAG 76 (129)
...|..++++..++.|+++.++.||=
T Consensus 206 ~~yp~~~il~~~~~~g~~itigSDAH 231 (269)
T PRK07328 206 EIYPSPALLRACRERGIPVVLGSDAH 231 (269)
T ss_pred CCCCCHHHHHHHHHcCCCEEEeCCCC
Confidence 45677788888888888888887763
No 51
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=23.44 E-value=1.2e+02 Score=20.35 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHH
Q 033037 55 TEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRF 90 (129)
Q Consensus 55 ~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~ 90 (129)
++++.+.|+++|+++-+=.++ .|..|++-.++
T Consensus 2 l~rl~~~m~~~gid~lll~~~----~ni~YltG~~~ 33 (132)
T PF01321_consen 2 LERLRAAMAEAGIDALLLTSP----ENIRYLTGFRW 33 (132)
T ss_dssp HHHHHHHHHHTT-SEEEEESH----HHHHHHHS--S
T ss_pred HHHHHHHHHHCCCCEEEEcCh----hhceEecCCCc
Confidence 467889999999997776666 67777777753
No 52
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=23.28 E-value=24 Score=23.35 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=9.6
Q ss_pred eEecCCCChhhhh
Q 033037 69 VVISDDAGRFVCN 81 (129)
Q Consensus 69 ~~~S~dAG~ylCN 81 (129)
+..++|.|.|.|-
T Consensus 71 v~~~d~~G~Y~C~ 83 (98)
T cd05758 71 TQESDFQTSYNCT 83 (98)
T ss_pred ccccccceeEEEE
Confidence 4445779999994
No 53
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=22.73 E-value=22 Score=23.03 Aligned_cols=11 Identities=27% Similarity=1.214 Sum_probs=9.5
Q ss_pred CCCChhhhhHH
Q 033037 73 DDAGRFVCNYV 83 (129)
Q Consensus 73 ~dAG~ylCN~i 83 (129)
.|.|.|.|...
T Consensus 72 ~D~G~Y~C~v~ 82 (98)
T cd05718 72 EDEGNYICEFA 82 (98)
T ss_pred ccCEEEEEEEE
Confidence 78899999865
No 54
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=22.57 E-value=23 Score=22.05 Aligned_cols=11 Identities=27% Similarity=0.749 Sum_probs=9.3
Q ss_pred cCCCChhhhhH
Q 033037 72 SDDAGRFVCNY 82 (129)
Q Consensus 72 S~dAG~ylCN~ 82 (129)
..|+|.|.|..
T Consensus 49 ~~D~G~Y~C~A 59 (75)
T cd05763 49 IEDTGVYSCTA 59 (75)
T ss_pred cccCEEEEEEE
Confidence 37999999975
No 55
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=22.43 E-value=2.2e+02 Score=23.66 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=45.4
Q ss_pred cceEEecCcHHHHHHHHHhcCCceEec-CCCChhhhhHHHHHHHHHhhhcCCceEEEEeCCCCC--CChHHHHHHHHHHH
Q 033037 46 EQVIWTSLSTEAILKFLKKKGFDVVIS-DDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFST--IDEDTQMQFVATLF 122 (129)
Q Consensus 46 ~~~~~T~lp~~~l~~~l~~~g~~~~~S-~dAG~ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~--~~~e~~~~~v~~li 122 (129)
+..+.|.=++++|++.-++.||.+... +-||.=.--...|--|...........-..++. .. +..+...+|+.+++
T Consensus 68 ~~~~YT~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~-~~l~~~~~~t~~fl~~v~ 146 (329)
T cd06568 68 PGGYYTQEDYKDIVAYAAERHITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGF-SSLDVDKPTTYEFVDDVF 146 (329)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCC-cccCCCCHHHHHHHHHHH
Confidence 345679999999999999999999888 456642111111111211100000001111111 11 23456789999999
Q ss_pred HHHHhh
Q 033037 123 EAVAST 128 (129)
Q Consensus 123 ~~la~~ 128 (129)
+++++.
T Consensus 147 ~E~~~~ 152 (329)
T cd06568 147 RELAAL 152 (329)
T ss_pred HHHHHh
Confidence 998764
No 56
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=22.40 E-value=23 Score=19.75 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=8.3
Q ss_pred cCCCChhhhh
Q 033037 72 SDDAGRFVCN 81 (129)
Q Consensus 72 S~dAG~ylCN 81 (129)
..|.|.|.|.
T Consensus 48 ~~d~G~Y~C~ 57 (63)
T smart00408 48 LEDSGEYTCV 57 (63)
T ss_pred cccCEEEEEE
Confidence 4789999995
No 57
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=22.37 E-value=17 Score=23.09 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=9.0
Q ss_pred cCCCChhhhhH
Q 033037 72 SDDAGRFVCNY 82 (129)
Q Consensus 72 S~dAG~ylCN~ 82 (129)
..|+|.|.|..
T Consensus 40 ~~D~G~YtC~a 50 (67)
T cd05863 40 EASAGTYTLVL 50 (67)
T ss_pred HHHCEEEEEEE
Confidence 47999999964
No 58
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=22.35 E-value=21 Score=22.38 Aligned_cols=11 Identities=27% Similarity=0.751 Sum_probs=8.8
Q ss_pred cCCCChhhhhH
Q 033037 72 SDDAGRFVCNY 82 (129)
Q Consensus 72 S~dAG~ylCN~ 82 (129)
..|+|.|.|..
T Consensus 47 ~~D~G~Y~C~a 57 (74)
T cd05738 47 ESDQGKYECVA 57 (74)
T ss_pred hhhCEEEEEEE
Confidence 46999999953
No 59
>PF13866 zf-SAP30: SAP30 zinc-finger; PDB: 2KDP_A 2LD7_A.
Probab=21.78 E-value=97 Score=21.13 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCceEecCCCCh-hhhhHHH
Q 033037 56 EAILKFLKKKGFDVVISDDAGR-FVCNYVY 84 (129)
Q Consensus 56 ~~l~~~l~~~g~~~~~S~dAG~-ylCN~iy 84 (129)
+.+.+.+.+.+++..+-.+|+. |+|+|-.
T Consensus 32 KRiqktv~Qk~lKL~~d~sa~H~YiCd~Hk 61 (78)
T PF13866_consen 32 KRIQKTVAQKKLKLNIDKSARHIYICDFHK 61 (78)
T ss_dssp HHHHHHHHHH--SEEE-TT-S-----HHHH
T ss_pred HHHHHHHHHhccceeeccccchhhHHHHHH
Confidence 5678888888999888777774 8999864
No 60
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=21.77 E-value=5.9e+02 Score=22.88 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=69.8
Q ss_pred CCCCCccccchHHHHHHhhCCCCchhHHHHhh---hhcCCCCCCcceEEecCcHHHHHHHHHhcCCceE----ecCCCCh
Q 033037 5 EGLPAGVTLGSCTVLEAAGDGALPTLLKTLES---SISQTNTNNEQVIWTSLSTEAILKFLKKKGFDVV----ISDDAGR 77 (129)
Q Consensus 5 ~~lP~~~~l~s~~vl~~~G~a~~r~~~~t~E~---~i~~~~~~~~~~~~T~lp~~~l~~~l~~~g~~~~----~S~dAG~ 77 (129)
=|||.|.-..|+ |= ..-.|++|-.|+-+.+ +|. +| .++.+--+.++++..++.|=.+. +|+.==.
T Consensus 49 VGLP~gqmGNSE-VG-H~~iGaGRiv~q~~~ri~~ai~----~g--~~~~n~~l~~~~~~~~~~~~~lHl~GL~SdGgVH 120 (501)
T TIGR01307 49 VGLPDGQMGNSE-VG-HLNIGAGRVVYQDLVRISQAIK----DG--EFFANPALLGAIDRAKDNNGKLHLMGLVSDGGVH 120 (501)
T ss_pred cCCCCCCCCchH-HH-HhhcCCCceeccchHHHHHHHh----cC--CcccCHHHHHHHHHHHhcCCceEEEEeccCCCCc
Confidence 478866544444 43 6677899988888877 233 22 45566666788888877654432 3432222
Q ss_pred hhhhHHHHHHHHHhhhcCCceEEEEeCCCCC-CChHHHHHHHHHHHHHHHh
Q 033037 78 FVCNYVYYHSLRFAEQKGHKSLFVHVPLFST-IDEDTQMQFVATLFEAVAS 127 (129)
Q Consensus 78 ylCN~iyY~sL~~~~~~~~~~~FVHVP~~~~-~~~e~~~~~v~~li~~la~ 127 (129)
--=++++ ..+..+.+++.+-+|||.=.-.+ .++.....++..|.+.|++
T Consensus 121 sh~~hl~-~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~~l~~~~~~ 170 (501)
T TIGR01307 121 SHIDHLI-ALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLEQLQAFLKE 170 (501)
T ss_pred chHHHHH-HHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHHHHHHHHHH
Confidence 2234443 44555666677789999865544 2445566777777776654
No 61
>PF07592 DDE_Tnp_ISAZ013: Rhodopirellula transposase DDE domain; InterPro: IPR011518 These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=21.49 E-value=1.5e+02 Score=25.10 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=41.0
Q ss_pred cceEEecCcHHHHHHHHHhcCCceEecCCCChhhhhHHHHHHHHHhh---hcCCceEEEEeCCCCCCChHHHHHHHHHHH
Q 033037 46 EQVIWTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAE---QKGHKSLFVHVPLFSTIDEDTQMQFVATLF 122 (129)
Q Consensus 46 ~~~~~T~lp~~~l~~~l~~~g~~~~~S~dAG~ylCN~iyY~sL~~~~---~~~~~~~FVHVP~~~~~~~e~~~~~v~~li 122 (129)
....||.+...++.++|.+.|++ +|..+-...|+..- +.+.+. .|--...+.+.|.+.+....
T Consensus 18 s~lrWT~~S~~~la~~L~~~G~~----------vS~~tV~~lL~~lGYsLq~n~Kt----~~g~~hpdRDaQF~~I~~~~ 83 (311)
T PF07592_consen 18 SPLRWTRKSTRKLAEELRRQGHP----------VSARTVARLLNRLGYSLQANRKT----KEGKKHPDRDAQFEYINQQV 83 (311)
T ss_pred CCeeeeeccHHHHHHHHHHcCCC----------ccHHHHHHHHHHcCcchhhhhcc----cCCCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999998 55555666666531 111121 23223334556666666554
Q ss_pred HH
Q 033037 123 EA 124 (129)
Q Consensus 123 ~~ 124 (129)
+.
T Consensus 84 ~~ 85 (311)
T PF07592_consen 84 KE 85 (311)
T ss_pred HH
Confidence 43
No 62
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=21.34 E-value=22 Score=22.89 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=9.2
Q ss_pred cCCCChhhhhH
Q 033037 72 SDDAGRFVCNY 82 (129)
Q Consensus 72 S~dAG~ylCN~ 82 (129)
..|+|.|.|..
T Consensus 50 ~~D~G~Y~C~A 60 (75)
T cd05892 50 KKDAGWYTVSA 60 (75)
T ss_pred hhhCEEEEEEE
Confidence 48999999964
No 63
>PF13107 DUF3964: Protein of unknown function (DUF3964)
Probab=21.26 E-value=57 Score=23.27 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=15.0
Q ss_pred HHHHHhhhcCCceEEEEeCCCC
Q 033037 86 HSLRFAEQKGHKSLFVHVPLFS 107 (129)
Q Consensus 86 ~sL~~~~~~~~~~~FVHVP~~~ 107 (129)
++-......+++.-|||+|..+
T Consensus 74 k~QaF~~e~~~k~FFv~Lp~i~ 95 (109)
T PF13107_consen 74 KYQAFADEMKCKAFFVNLPEIE 95 (109)
T ss_pred hHHHHhhhhhhHHHeeeCchhh
Confidence 3333433346789999999876
No 64
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=21.08 E-value=26 Score=21.83 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=9.0
Q ss_pred cCCCChhhhhH
Q 033037 72 SDDAGRFVCNY 82 (129)
Q Consensus 72 S~dAG~ylCN~ 82 (129)
..|+|.|.|..
T Consensus 53 ~~DsG~Y~C~a 63 (76)
T cd05895 53 LADNGEYKCMV 63 (76)
T ss_pred cccCEEEEEEE
Confidence 37999999964
No 65
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=21.00 E-value=2.9e+02 Score=23.00 Aligned_cols=74 Identities=18% Similarity=0.360 Sum_probs=47.3
Q ss_pred cceEEecCcHHHHHHHHHhcCCceEec-CCCChhhhhHHHHHHHHHhhhcC-----Cc---eEEEEeCCCCCC--ChHHH
Q 033037 46 EQVIWTSLSTEAILKFLKKKGFDVVIS-DDAGRFVCNYVYYHSLRFAEQKG-----HK---SLFVHVPLFSTI--DEDTQ 114 (129)
Q Consensus 46 ~~~~~T~lp~~~l~~~l~~~g~~~~~S-~dAG~ylCN~iyY~sL~~~~~~~-----~~---~~FVHVP~~~~~--~~e~~ 114 (129)
+..+.|.=++++|++--++.||.+... +.|| ++.......+ .. .-|..-+....+ ..+..
T Consensus 63 ~~~~YT~~di~eiv~yA~~rgI~vIPEID~PG---------H~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t 133 (348)
T cd06562 63 PSEVYTPEDVKEIVEYARLRGIRVIPEIDTPG---------HTGSWGQGYPELLTGCYAVWRKYCPEPPCGQLNPTNPKT 133 (348)
T ss_pred CCceECHHHHHHHHHHHHHcCCEEEEeccCch---------hhHHHHHhChhhhCCCCccccccccCCCCccccCCChhH
Confidence 356779999999999999999998877 5678 4444332111 00 011111222222 34567
Q ss_pred HHHHHHHHHHHHhh
Q 033037 115 MQFVATLFEAVAST 128 (129)
Q Consensus 115 ~~~v~~li~~la~~ 128 (129)
.+|+.++++++++.
T Consensus 134 ~~fl~~vl~E~~~l 147 (348)
T cd06562 134 YDFLKTLFKEVSEL 147 (348)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999999874
No 66
>smart00406 IGv Immunoglobulin V-Type.
Probab=20.95 E-value=19 Score=21.96 Aligned_cols=9 Identities=33% Similarity=1.095 Sum_probs=7.6
Q ss_pred CCCChhhhh
Q 033037 73 DDAGRFVCN 81 (129)
Q Consensus 73 ~dAG~ylCN 81 (129)
.|.|.|.|.
T Consensus 72 ~D~G~Y~C~ 80 (81)
T smart00406 72 EDTGTYYCA 80 (81)
T ss_pred HHCEEEEEc
Confidence 689999994
No 67
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=20.91 E-value=1.6e+02 Score=19.50 Aligned_cols=29 Identities=14% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEeCCCCC-CChHHHHHHHHHHHHHHHhh
Q 033037 100 FVHVPLFST-IDEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 100 FVHVP~~~~-~~~e~~~~~v~~li~~la~~ 128 (129)
||||=.++. .+.|+..+++.++-+++++.
T Consensus 3 ~I~I~~~~g~~s~EqK~~La~~iT~a~~~~ 32 (76)
T PRK01271 3 HIDIKCFPRELDEEQKAALAADITDVIIRH 32 (76)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 567777774 67888888888888877764
No 68
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=20.76 E-value=24 Score=23.56 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=12.4
Q ss_pred ecCCCChhhhhHHHHH
Q 033037 71 ISDDAGRFVCNYVYYH 86 (129)
Q Consensus 71 ~S~dAG~ylCN~iyY~ 86 (129)
-..|+|+|-|-+.++.
T Consensus 63 ~~~~~G~Y~C~~~~~~ 78 (94)
T cd05711 63 TPAHAGTYRCYGSYNH 78 (94)
T ss_pred CcccCEEEEEEEECCC
Confidence 4579999999876554
No 69
>PRK05434 phosphoglyceromutase; Provisional
Probab=20.52 E-value=6.3e+02 Score=22.68 Aligned_cols=117 Identities=21% Similarity=0.269 Sum_probs=70.8
Q ss_pred CCCCCccccchHHHHHHhhCCCCchhHHHHhhhhcCCCCCCcceEEecCcHHHHHHHHHhcCCceE----ecCCCChhhh
Q 033037 5 EGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWTSLSTEAILKFLKKKGFDVV----ISDDAGRFVC 80 (129)
Q Consensus 5 ~~lP~~~~l~s~~vl~~~G~a~~r~~~~t~E~~i~~~~~~~~~~~~T~lp~~~l~~~l~~~g~~~~----~S~dAG~ylC 80 (129)
=|||.|.- |...|= ..-.|++|..|+-+.+ |+. + =....++.+--+.++++..++.|=.+. +|+.==.--=
T Consensus 53 VGLP~gqm-GNSEVG-H~~iGaGriv~q~~~~-i~~-a-i~~g~~~~n~~~~~~~~~~~~~~~~lHl~GL~SdggVHsh~ 127 (507)
T PRK05434 53 VGLPDGQM-GNSEVG-HLNIGAGRIVYQDLTR-INK-A-IEDGSFFENPALLDAIDKAKKNGGALHLMGLLSDGGVHSHI 127 (507)
T ss_pred cCCCCCCc-cchHHh-HhhcCCCceeccchHH-HHH-H-HhcCCcccCHHHHHHHHHHHhcCCeEEEEEeccCCCcccHH
Confidence 47886654 444443 6677999999888888 221 1 112235566667888888887654432 3432222222
Q ss_pred hHHHHHHHHHhhhcCCceEEEEeCCCCC-CChHHHHHHHHHHHHHHHh
Q 033037 81 NYVYYHSLRFAEQKGHKSLFVHVPLFST-IDEDTQMQFVATLFEAVAS 127 (129)
Q Consensus 81 N~iyY~sL~~~~~~~~~~~FVHVP~~~~-~~~e~~~~~v~~li~~la~ 127 (129)
++++ ..+..+.+++.+-+|||.=.-.+ .++..-..++..|.+.|++
T Consensus 128 ~hl~-~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~~l~~~~~~ 174 (507)
T PRK05434 128 DHLF-ALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLEELEAKLAE 174 (507)
T ss_pred HHHH-HHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHH
Confidence 4443 34555556677889999865544 3455566778877777765
No 70
>TIGR00653 GlnA glutamine synthetase, type I. Alternate name: glutamate--ammonia ligase. This model represents the dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. E. coli, Synechocystis PCC6803, Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon Sulfolobus acidocaldarius differs from that in E. coli in that it is not regulated by adenylylation.
Probab=20.51 E-value=3e+02 Score=24.08 Aligned_cols=73 Identities=15% Similarity=0.363 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCceEe---cCCCChhhhhHHHHHHHHHhhh--------------c--------------CCceEEEEeC
Q 033037 56 EAILKFLKKKGFDVVI---SDDAGRFVCNYVYYHSLRFAEQ--------------K--------------GHKSLFVHVP 104 (129)
Q Consensus 56 ~~l~~~l~~~g~~~~~---S~dAG~ylCN~iyY~sL~~~~~--------------~--------------~~~~~FVHVP 104 (129)
.+|++.|.+.|+++.- -..+|.|=.|.-|-..|..+.+ + ...+.-||+=
T Consensus 186 ~~i~~~l~~~Gi~v~~~~~E~gpGQ~Ei~l~~~~~l~aAD~~~~~k~~ik~vA~~~G~~ATFmpKP~~~~~GSG~H~H~S 265 (460)
T TIGR00653 186 REMVLYLEQLGFDVEVHHHEVATGQHEIDFKFDTLLKTADDIQTYKYVVKNVARKHGKTATFMPKPLFGDNGSGMHCHQS 265 (460)
T ss_pred HHHHHHHHHcCCCceeeecCcCCCceeEecCCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEecccCCCCCcCceeEEEC
Confidence 4689999999999887 4678999998877766654321 1 2356788875
Q ss_pred CCCCC------------ChHHHHHHHHHHHHHHHhh
Q 033037 105 LFSTI------------DEDTQMQFVATLFEAVAST 128 (129)
Q Consensus 105 ~~~~~------------~~e~~~~~v~~li~~la~~ 128 (129)
....- -++..+.|+..+++.+...
T Consensus 266 l~d~g~n~F~d~~~~~~lS~~~~~fiaGiL~h~~~l 301 (460)
T TIGR00653 266 LWKDGENLFAGEEGYAGLSETALYYIGGILKHAKAL 301 (460)
T ss_pred ccCCCeeccCCCCCCcccCHHHHHHHHHHHHHHHHh
Confidence 43210 1345678999998887654
No 71
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=20.38 E-value=23 Score=22.61 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=8.9
Q ss_pred CCCChhhhhH
Q 033037 73 DDAGRFVCNY 82 (129)
Q Consensus 73 ~dAG~ylCN~ 82 (129)
.|+|.|.|..
T Consensus 59 ~DsG~Y~C~a 68 (84)
T cd05742 59 KDSGTYTCAA 68 (84)
T ss_pred hhCEEEEEEE
Confidence 7899999976
No 72
>PF06967 Mo-nitro_C: Mo-dependent nitrogenase C-terminus; InterPro: IPR009717 This entry represents the C terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria [].
Probab=20.28 E-value=1.9e+02 Score=20.03 Aligned_cols=12 Identities=17% Similarity=0.645 Sum_probs=10.1
Q ss_pred EEEeCCCCCCCh
Q 033037 100 FVHVPLFSTIDE 111 (129)
Q Consensus 100 FVHVP~~~~~~~ 111 (129)
.+|+||+=++++
T Consensus 45 l~hIPPLCKLNP 56 (84)
T PF06967_consen 45 LFHIPPLCKLNP 56 (84)
T ss_pred EEecCCCCccCh
Confidence 479999998875
No 73
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=20.20 E-value=17 Score=23.97 Aligned_cols=11 Identities=45% Similarity=1.084 Sum_probs=9.0
Q ss_pred CCCChhhhhHH
Q 033037 73 DDAGRFVCNYV 83 (129)
Q Consensus 73 ~dAG~ylCN~i 83 (129)
.|+|+|-|-|.
T Consensus 63 ~~~G~Y~C~~~ 73 (91)
T cd05751 63 EHAGRYRCYYR 73 (91)
T ss_pred hHCEEEEEEEE
Confidence 68999999753
No 74
>PRK08392 hypothetical protein; Provisional
Probab=20.16 E-value=96 Score=23.77 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=20.2
Q ss_pred CcHHHHHHHHHhcCCceEecCCCCh
Q 033037 53 LSTEAILKFLKKKGFDVVISDDAGR 77 (129)
Q Consensus 53 lp~~~l~~~l~~~g~~~~~S~dAG~ 77 (129)
.|-.++++..++.|+++.++.||=.
T Consensus 161 ~p~~~~l~~~~~~G~~~~igSDAH~ 185 (215)
T PRK08392 161 VPDLEFIRECIKRGIKLTFASDAHR 185 (215)
T ss_pred CCCHHHHHHHHHcCCEEEEeCCCCC
Confidence 5777888888888999888888743
No 75
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=20.10 E-value=29 Score=22.38 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=9.7
Q ss_pred cCCCChhhhhHH
Q 033037 72 SDDAGRFVCNYV 83 (129)
Q Consensus 72 S~dAG~ylCN~i 83 (129)
..|+|.|.|...
T Consensus 71 ~~D~G~Y~C~a~ 82 (96)
T cd05732 71 LTDAGRYDCEAS 82 (96)
T ss_pred cCcCEEeEEEEE
Confidence 389999999753
No 76
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=20.05 E-value=27 Score=21.94 Aligned_cols=12 Identities=25% Similarity=0.850 Sum_probs=9.7
Q ss_pred cCCCChhhhhHH
Q 033037 72 SDDAGRFVCNYV 83 (129)
Q Consensus 72 S~dAG~ylCN~i 83 (129)
..|+|.|.|...
T Consensus 53 ~~D~G~Y~C~a~ 64 (79)
T cd05734 53 EEDSGYYLCKVS 64 (79)
T ss_pred cccCEEEEEEEE
Confidence 489999999753
Done!