Query 033041
Match_columns 129
No_of_seqs 210 out of 1823
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 14:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ect_A Ring finger protein 126 99.6 3.4E-16 1.1E-20 97.4 5.0 51 1-52 16-66 (78)
2 2ep4_A Ring finger protein 24; 99.6 4.9E-16 1.7E-20 95.8 4.6 50 1-51 16-65 (74)
3 1iym_A EL5; ring-H2 finger, ub 99.6 3.2E-16 1.1E-20 91.3 3.6 49 1-49 6-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 6.6E-16 2.3E-20 94.0 4.5 50 1-51 15-64 (69)
5 1x4j_A Ring finger protein 38; 99.6 2.6E-16 8.9E-21 97.4 2.7 49 2-51 25-73 (75)
6 2l0b_A E3 ubiquitin-protein li 99.6 7.9E-16 2.7E-20 98.8 3.6 48 2-50 42-89 (91)
7 1v87_A Deltex protein 2; ring- 99.6 4.2E-15 1.4E-19 98.6 5.3 52 2-54 27-98 (114)
8 2ecl_A Ring-box protein 2; RNF 99.5 1.9E-15 6.5E-20 95.2 2.1 50 2-51 17-77 (81)
9 2ecm_A Ring finger and CHY zin 99.5 9.7E-15 3.3E-19 84.8 3.3 48 1-49 6-54 (55)
10 3ng2_A RNF4, snurf, ring finge 99.5 7.2E-15 2.4E-19 89.6 2.7 50 1-51 11-64 (71)
11 3dpl_R Ring-box protein 1; ubi 99.5 1.7E-14 5.9E-19 95.4 4.2 49 2-51 39-102 (106)
12 2ea6_A Ring finger protein 4; 99.5 7.3E-15 2.5E-19 88.9 2.2 48 1-49 16-67 (69)
13 2djb_A Polycomb group ring fin 99.5 2.3E-14 7.8E-19 88.0 4.4 47 1-51 16-63 (72)
14 2d8t_A Dactylidin, ring finger 99.5 1.4E-14 4.9E-19 88.7 2.7 47 1-51 16-62 (71)
15 2xeu_A Ring finger protein 4; 99.5 1.3E-14 4.5E-19 86.5 2.4 49 1-50 4-56 (64)
16 4ayc_A E3 ubiquitin-protein li 99.5 2.2E-14 7.6E-19 98.5 3.4 46 1-50 54-99 (138)
17 2ct0_A Non-SMC element 1 homol 99.4 9.7E-14 3.3E-18 86.2 5.0 48 2-52 17-66 (74)
18 2ecn_A Ring finger protein 141 99.4 3.3E-14 1.1E-18 86.6 2.3 46 1-51 16-61 (70)
19 2csy_A Zinc finger protein 183 99.4 5.2E-14 1.8E-18 88.1 3.0 45 1-49 16-60 (81)
20 2yur_A Retinoblastoma-binding 99.4 8.9E-14 3.1E-18 85.8 3.7 46 1-49 16-63 (74)
21 2ysl_A Tripartite motif-contai 99.4 1E-13 3.6E-18 84.8 3.6 46 1-50 21-69 (73)
22 2ecy_A TNF receptor-associated 99.4 1E-13 3.5E-18 83.6 3.5 46 1-50 16-62 (66)
23 3lrq_A E3 ubiquitin-protein li 99.4 7.9E-14 2.7E-18 90.9 2.8 46 1-50 23-70 (100)
24 2ct2_A Tripartite motif protei 99.4 1.4E-13 4.7E-18 87.0 3.8 49 1-50 16-68 (88)
25 1t1h_A Gspef-atpub14, armadill 99.4 1.4E-13 4.8E-18 85.4 3.5 46 1-50 9-55 (78)
26 2y43_A E3 ubiquitin-protein li 99.4 2.1E-13 7.1E-18 88.4 3.7 46 1-50 23-69 (99)
27 4a0k_B E3 ubiquitin-protein li 99.4 3.6E-14 1.2E-18 95.4 0.0 49 2-51 50-113 (117)
28 1chc_A Equine herpes virus-1 r 99.4 3.8E-13 1.3E-17 81.3 4.5 47 1-50 6-52 (68)
29 2d8s_A Cellular modulator of i 99.4 2.1E-13 7.2E-18 85.9 3.3 49 2-52 17-72 (80)
30 2ecw_A Tripartite motif-contai 99.4 2.9E-13 1E-17 84.6 3.9 46 1-50 20-71 (85)
31 2ecv_A Tripartite motif-contai 99.4 3.9E-13 1.4E-17 84.0 4.3 46 1-50 20-71 (85)
32 2egp_A Tripartite motif-contai 99.4 1.2E-13 4.1E-18 85.7 1.8 46 1-50 13-65 (79)
33 2ckl_A Polycomb group ring fin 99.4 3.2E-13 1.1E-17 88.9 3.7 46 1-50 16-62 (108)
34 3fl2_A E3 ubiquitin-protein li 99.4 4.6E-13 1.6E-17 90.1 4.5 46 1-50 53-99 (124)
35 2ysj_A Tripartite motif-contai 99.4 5.2E-13 1.8E-17 79.7 3.9 40 1-44 21-63 (63)
36 4ap4_A E3 ubiquitin ligase RNF 99.3 4.5E-13 1.5E-17 90.1 3.0 50 1-51 8-61 (133)
37 3ztg_A E3 ubiquitin-protein li 99.3 6.8E-13 2.3E-17 84.7 3.4 46 1-49 14-61 (92)
38 1jm7_A BRCA1, breast cancer ty 99.3 1.4E-12 4.7E-17 85.9 4.2 46 1-50 22-70 (112)
39 2ecj_A Tripartite motif-contai 99.3 1E-12 3.5E-17 76.8 3.0 40 1-44 16-58 (58)
40 1g25_A CDK-activating kinase a 99.3 1.9E-12 6.4E-17 77.7 4.0 49 1-50 4-55 (65)
41 2ckl_B Ubiquitin ligase protei 99.3 9E-13 3.1E-17 92.7 3.0 45 2-50 56-102 (165)
42 1z6u_A NP95-like ring finger p 99.3 1.6E-12 5.3E-17 90.7 3.7 47 1-51 79-126 (150)
43 3l11_A E3 ubiquitin-protein li 99.3 5.9E-13 2E-17 88.4 0.8 46 1-50 16-62 (115)
44 1rmd_A RAG1; V(D)J recombinati 99.2 3.4E-12 1.2E-16 84.8 3.3 47 1-51 24-71 (116)
45 2kr4_A Ubiquitin conjugation f 99.2 3.9E-12 1.3E-16 80.7 3.0 46 1-50 15-60 (85)
46 3hct_A TNF receptor-associated 99.2 2.6E-12 9E-17 85.8 2.0 46 1-50 19-65 (118)
47 2kre_A Ubiquitin conjugation f 99.2 6.1E-12 2.1E-16 82.2 3.5 46 1-50 30-75 (100)
48 4ap4_A E3 ubiquitin ligase RNF 99.2 3.8E-12 1.3E-16 85.6 2.2 50 1-51 73-126 (133)
49 1wgm_A Ubiquitin conjugation f 99.2 1E-11 3.4E-16 80.9 3.6 46 1-50 23-69 (98)
50 1jm7_B BARD1, BRCA1-associated 99.2 5.3E-12 1.8E-16 84.2 2.2 43 1-49 23-66 (117)
51 1e4u_A Transcriptional repress 99.2 5.4E-11 1.8E-15 74.4 5.6 51 1-52 12-64 (78)
52 3knv_A TNF receptor-associated 99.1 8.5E-12 2.9E-16 86.1 0.9 45 1-49 32-77 (141)
53 1bor_A Transcription factor PM 99.1 1.3E-11 4.3E-16 72.3 1.3 43 1-50 7-49 (56)
54 2vje_A E3 ubiquitin-protein li 99.1 3.6E-11 1.2E-15 72.3 2.5 45 2-50 10-57 (64)
55 2y1n_A E3 ubiquitin-protein li 99.1 5E-11 1.7E-15 94.2 3.9 46 2-51 334-380 (389)
56 4ic3_A E3 ubiquitin-protein li 99.1 3.4E-11 1.2E-15 74.3 2.0 42 1-50 25-67 (74)
57 2vje_B MDM4 protein; proto-onc 99.0 7.2E-11 2.4E-15 70.8 2.4 45 2-50 9-56 (63)
58 2yu4_A E3 SUMO-protein ligase 99.0 9.3E-11 3.2E-15 75.5 2.6 44 1-47 8-59 (94)
59 2c2l_A CHIP, carboxy terminus 99.0 1.1E-10 3.6E-15 87.2 2.7 46 1-50 209-255 (281)
60 3hcs_A TNF receptor-associated 99.0 1E-10 3.6E-15 82.4 2.0 46 1-50 19-65 (170)
61 3k1l_B Fancl; UBC, ring, RWD, 98.9 1.6E-10 5.6E-15 89.9 0.5 49 2-50 310-373 (381)
62 2ecg_A Baculoviral IAP repeat- 98.9 5.3E-10 1.8E-14 68.9 2.4 41 2-50 27-68 (75)
63 2f42_A STIP1 homology and U-bo 98.9 5.4E-10 1.8E-14 80.0 2.7 46 1-50 107-153 (179)
64 1wim_A KIAA0161 protein; ring 98.9 6.8E-10 2.3E-14 71.2 2.0 46 1-47 6-61 (94)
65 2yho_A E3 ubiquitin-protein li 98.8 1.1E-09 3.9E-14 68.3 1.5 43 1-51 19-62 (79)
66 3htk_C E3 SUMO-protein ligase 98.7 3.3E-09 1.1E-13 79.8 2.6 47 1-50 182-232 (267)
67 2ea5_A Cell growth regulator w 98.7 5.4E-09 1.8E-13 63.4 3.0 43 1-51 16-59 (68)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.7 7.2E-09 2.5E-13 61.5 2.8 45 2-49 8-58 (60)
69 2bay_A PRE-mRNA splicing facto 98.7 5.7E-09 1.9E-13 62.1 2.0 47 1-51 4-51 (61)
70 3t6p_A Baculoviral IAP repeat- 98.6 5E-09 1.7E-13 81.8 1.0 42 1-50 296-338 (345)
71 3nw0_A Non-structural maintena 98.6 4.2E-08 1.4E-12 73.0 5.3 48 2-52 182-231 (238)
72 3vk6_A E3 ubiquitin-protein li 98.3 4.7E-07 1.6E-11 58.6 3.6 47 2-51 3-50 (101)
73 2ko5_A Ring finger protein Z; 97.2 0.0007 2.4E-08 43.2 5.0 48 2-54 30-77 (99)
74 2lri_C Autoimmune regulator; Z 95.5 0.009 3.1E-07 35.6 2.7 42 2-47 14-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 95.5 0.0053 1.8E-07 38.9 1.7 33 1-34 4-36 (101)
76 1we9_A PHD finger family prote 94.6 0.0049 1.7E-07 36.2 -0.3 45 2-46 8-57 (64)
77 3lqh_A Histone-lysine N-methyl 92.8 0.03 1E-06 39.8 0.9 46 2-47 4-63 (183)
78 1wep_A PHF8; structural genomi 92.7 0.055 1.9E-06 33.0 2.0 46 2-48 14-64 (79)
79 2kgg_A Histone demethylase jar 92.6 0.094 3.2E-06 29.3 2.7 43 3-45 5-52 (52)
80 2k16_A Transcription initiatio 92.6 0.037 1.3E-06 33.3 1.0 47 2-49 20-70 (75)
81 1weo_A Cellulose synthase, cat 91.4 0.43 1.5E-05 30.0 4.9 50 2-51 18-71 (93)
82 2vpb_A Hpygo1, pygopus homolog 91.3 0.13 4.4E-06 30.3 2.4 31 2-32 10-41 (65)
83 1wil_A KIAA1045 protein; ring 90.6 0.17 5.9E-06 31.5 2.5 13 22-34 35-47 (89)
84 2l5u_A Chromodomain-helicase-D 90.5 0.11 3.9E-06 30.0 1.6 41 2-46 13-57 (61)
85 1wem_A Death associated transc 90.3 0.072 2.5E-06 32.1 0.6 45 2-48 18-71 (76)
86 3v43_A Histone acetyltransfera 90.2 0.087 3E-06 34.2 1.0 45 2-46 63-111 (112)
87 1f62_A Transcription factor WS 89.9 0.14 4.7E-06 28.3 1.5 44 2-46 2-49 (51)
88 2xb1_A Pygopus homolog 2, B-ce 89.3 0.15 5.1E-06 32.8 1.6 46 2-47 5-61 (105)
89 1wee_A PHD finger family prote 88.8 0.036 1.2E-06 33.2 -1.6 45 2-47 18-66 (72)
90 1wev_A Riken cDNA 1110020M19; 88.4 0.089 3.1E-06 32.8 0.0 48 2-49 18-74 (88)
91 3m62_A Ubiquitin conjugation f 88.2 0.28 9.6E-06 42.8 2.9 46 1-50 892-938 (968)
92 2ri7_A Nucleosome-remodeling f 87.9 0.2 6.8E-06 34.6 1.6 45 2-47 10-59 (174)
93 2lv9_A Histone-lysine N-methyl 87.8 0.089 3.1E-06 33.4 -0.3 43 2-46 30-75 (98)
94 3o70_A PHD finger protein 13; 86.4 0.1 3.5E-06 31.0 -0.6 43 2-46 21-66 (68)
95 3o36_A Transcription intermedi 86.2 0.15 5.2E-06 35.7 0.2 42 2-47 6-51 (184)
96 1wew_A DNA-binding family prot 86.0 0.13 4.4E-06 31.2 -0.2 44 2-47 18-72 (78)
97 1mm2_A MI2-beta; PHD, zinc fin 86.0 0.11 3.7E-06 30.1 -0.6 42 2-47 11-56 (61)
98 3v43_A Histone acetyltransfera 85.6 1.1 3.8E-05 28.8 4.2 31 2-32 7-42 (112)
99 3u5n_A E3 ubiquitin-protein li 85.2 0.15 5.1E-06 36.4 -0.3 43 2-48 9-55 (207)
100 1z60_A TFIIH basal transcripti 85.1 0.53 1.8E-05 27.2 2.1 41 3-44 18-58 (59)
101 1weu_A Inhibitor of growth fam 84.7 0.34 1.1E-05 30.5 1.2 41 2-47 38-85 (91)
102 2cs3_A Protein C14ORF4, MY039 82.8 1.1 3.9E-05 27.6 3.0 36 1-37 16-52 (93)
103 1wen_A Inhibitor of growth fam 82.0 0.66 2.3E-05 27.6 1.7 41 2-47 18-65 (71)
104 2yql_A PHD finger protein 21A; 81.0 0.11 3.9E-06 29.4 -1.9 40 2-45 11-54 (56)
105 1xwh_A Autoimmune regulator; P 80.8 0.19 6.6E-06 29.4 -1.0 41 2-46 10-54 (66)
106 3i2d_A E3 SUMO-protein ligase 80.5 1.4 4.7E-05 34.5 3.5 46 1-49 250-299 (371)
107 4fo9_A E3 SUMO-protein ligase 79.1 1.5 5.3E-05 34.1 3.3 46 1-49 216-265 (360)
108 3kqi_A GRC5, PHD finger protei 78.8 0.44 1.5E-05 28.5 0.1 43 5-47 14-61 (75)
109 2puy_A PHD finger protein 21A; 78.7 0.29 1E-05 28.0 -0.6 43 2-48 7-53 (60)
110 2kwj_A Zinc finger protein DPF 78.3 1.3 4.4E-05 28.6 2.3 33 2-34 3-41 (114)
111 1fp0_A KAP-1 corepressor; PHD 76.6 1.2 4E-05 27.8 1.7 41 2-46 27-71 (88)
112 2ro1_A Transcription intermedi 76.4 0.54 1.9E-05 33.1 0.1 42 2-47 4-49 (189)
113 2ysm_A Myeloid/lymphoid or mix 76.1 0.57 1.9E-05 30.0 0.1 43 2-45 9-55 (111)
114 3shb_A E3 ubiquitin-protein li 75.5 0.31 1.1E-05 29.6 -1.2 43 3-46 29-76 (77)
115 2lbm_A Transcriptional regulat 75.2 2.9 9.9E-05 28.3 3.5 41 2-46 65-116 (142)
116 1y02_A CARP2, FYVE-ring finger 75.1 0.29 9.9E-06 32.3 -1.5 46 2-47 21-66 (120)
117 2l43_A N-teminal domain from h 74.8 0.65 2.2E-05 28.8 0.1 46 2-47 27-75 (88)
118 2yt5_A Metal-response element- 74.1 1.2 4.2E-05 25.6 1.2 46 2-47 8-61 (66)
119 3o7a_A PHD finger protein 13 v 74.0 0.45 1.5E-05 26.4 -0.7 41 5-46 8-51 (52)
120 1joc_A EEA1, early endosomal a 72.2 2.1 7.1E-05 28.2 2.1 32 2-33 71-102 (125)
121 2vnf_A ING 4, P29ING4, inhibit 72.0 0.69 2.4E-05 26.5 -0.2 39 3-46 13-58 (60)
122 3t7l_A Zinc finger FYVE domain 71.6 2.3 7.8E-05 26.3 2.1 48 2-49 22-75 (90)
123 3c6w_A P28ING5, inhibitor of g 70.5 0.82 2.8E-05 26.2 -0.2 39 3-46 12-57 (59)
124 3asl_A E3 ubiquitin-protein li 70.0 0.72 2.5E-05 27.3 -0.5 43 3-46 21-68 (70)
125 2e6s_A E3 ubiquitin-protein li 69.6 0.76 2.6E-05 27.8 -0.4 43 3-46 29-76 (77)
126 2ku3_A Bromodomain-containing 69.1 3.6 0.00012 24.3 2.5 45 2-46 18-65 (71)
127 1zbd_B Rabphilin-3A; G protein 68.7 2 6.8E-05 28.7 1.5 46 2-47 57-107 (134)
128 2e6r_A Jumonji/ARID domain-con 68.1 0.33 1.1E-05 30.4 -2.4 45 2-47 18-66 (92)
129 2rsd_A E3 SUMO-protein ligase 68.1 0.24 8.2E-06 29.2 -2.9 41 5-46 14-64 (68)
130 1vfy_A Phosphatidylinositol-3- 65.7 3.6 0.00012 24.2 2.1 32 2-33 13-44 (73)
131 1x4k_A Skeletal muscle LIM-pro 65.6 3 0.0001 23.8 1.7 39 2-50 7-45 (72)
132 1z2q_A LM5-1; membrane protein 65.3 3.4 0.00012 25.1 2.0 33 2-34 23-55 (84)
133 2yw8_A RUN and FYVE domain-con 64.8 3.2 0.00011 25.0 1.8 32 2-33 21-52 (82)
134 2gmg_A Hypothetical protein PF 64.7 1.3 4.5E-05 28.5 -0.1 26 21-51 72-97 (105)
135 3kv5_D JMJC domain-containing 64.3 0.95 3.3E-05 36.6 -1.0 44 5-48 41-89 (488)
136 3mpx_A FYVE, rhogef and PH dom 63.7 1.5 5E-05 34.1 0.0 47 2-48 377-430 (434)
137 1x61_A Thyroid receptor intera 63.5 3.3 0.00011 23.7 1.6 38 2-49 7-44 (72)
138 1wfk_A Zinc finger, FYVE domai 62.9 3.4 0.00012 25.4 1.6 49 2-50 11-66 (88)
139 3ask_A E3 ubiquitin-protein li 62.6 1.6 5.4E-05 31.9 -0.0 43 3-46 177-224 (226)
140 3mjh_B Early endosome antigen 62.4 1.8 6.2E-05 22.1 0.2 12 2-13 7-18 (34)
141 1x62_A C-terminal LIM domain p 62.1 3.3 0.00011 24.3 1.4 36 2-49 17-52 (79)
142 1dvp_A HRS, hepatocyte growth 61.8 3.2 0.00011 29.6 1.5 33 2-34 163-195 (220)
143 3ql9_A Transcriptional regulat 60.9 7.8 0.00027 25.7 3.2 41 2-46 59-110 (129)
144 1x4u_A Zinc finger, FYVE domai 60.8 4 0.00014 24.7 1.6 31 2-32 16-46 (84)
145 1g47_A Pinch protein; LIM doma 60.4 3.8 0.00013 23.7 1.5 39 2-50 13-51 (77)
146 2zet_C Melanophilin; complex, 60.3 4.8 0.00016 27.5 2.1 44 2-46 70-116 (153)
147 1wyh_A SLIM 2, skeletal muscle 60.3 3 0.0001 23.8 1.0 39 2-50 7-45 (72)
148 3zyq_A Hepatocyte growth facto 60.3 3.7 0.00013 29.6 1.6 33 2-34 166-198 (226)
149 1x4l_A Skeletal muscle LIM-pro 59.7 4.2 0.00014 23.2 1.6 38 2-49 7-46 (72)
150 1wd2_A Ariadne-1 protein homol 59.6 0.65 2.2E-05 26.8 -2.0 35 2-36 8-46 (60)
151 2jmi_A Protein YNG1, ING1 homo 59.2 1.7 5.7E-05 27.2 -0.3 42 2-46 28-75 (90)
152 1x63_A Skeletal muscle LIM-pro 59.1 4.2 0.00014 23.9 1.5 39 2-50 17-55 (82)
153 2dar_A PDZ and LIM domain prot 58.6 3.3 0.00011 25.0 1.0 37 2-50 27-63 (90)
154 2o35_A Hypothetical protein DU 57.6 3.9 0.00013 26.1 1.2 12 25-36 42-53 (105)
155 3fyb_A Protein of unknown func 57.5 3.9 0.00013 26.0 1.2 12 25-36 41-52 (104)
156 2ku7_A MLL1 PHD3-CYP33 RRM chi 57.0 21 0.00074 22.4 4.9 26 21-46 7-43 (140)
157 1x64_A Alpha-actinin-2 associa 56.3 4.7 0.00016 24.2 1.4 37 2-50 27-63 (89)
158 2d8z_A Four and A half LIM dom 55.9 5.4 0.00019 22.6 1.6 36 2-49 7-42 (70)
159 1x68_A FHL5 protein; four-and- 55.8 5.4 0.00018 23.1 1.6 38 2-49 7-46 (76)
160 2l3k_A Rhombotin-2, linker, LI 55.0 3.9 0.00014 26.2 1.0 37 2-48 10-46 (123)
161 3f6q_B LIM and senescent cell 54.3 4.9 0.00017 22.7 1.2 39 2-50 13-51 (72)
162 2kpi_A Uncharacterized protein 53.6 5.1 0.00018 22.6 1.2 9 2-10 12-20 (56)
163 2cu8_A Cysteine-rich protein 2 53.4 4.3 0.00015 23.6 0.8 38 2-50 11-48 (76)
164 1nyp_A Pinch protein; LIM doma 52.6 5.3 0.00018 22.4 1.2 36 2-49 7-42 (66)
165 2jmo_A Parkin; IBR, E3 ligase, 52.2 0.92 3.2E-05 27.5 -2.4 15 21-35 55-69 (80)
166 2jne_A Hypothetical protein YF 51.6 4.2 0.00015 25.8 0.6 41 2-51 34-74 (101)
167 2das_A Zinc finger MYM-type pr 51.3 14 0.00047 21.3 2.7 35 1-35 21-56 (62)
168 1wig_A KIAA1808 protein; LIM d 51.0 5.9 0.0002 22.9 1.2 36 2-49 7-42 (73)
169 2xjy_A Rhombotin-2; oncoprotei 50.9 11 0.00039 24.0 2.7 48 1-49 30-77 (131)
170 2d8x_A Protein pinch; LIM doma 50.1 4.9 0.00017 22.8 0.7 37 2-50 7-43 (70)
171 4gne_A Histone-lysine N-methyl 50.1 6.5 0.00022 25.2 1.4 41 2-48 17-63 (107)
172 2dj7_A Actin-binding LIM prote 49.7 5.9 0.0002 23.4 1.1 37 2-49 17-53 (80)
173 2cur_A Skeletal muscle LIM-pro 49.3 5.3 0.00018 22.6 0.8 36 2-49 7-42 (69)
174 2co8_A NEDD9 interacting prote 49.2 7.1 0.00024 23.1 1.4 38 2-50 17-54 (82)
175 2g6q_A Inhibitor of growth pro 48.7 1.9 6.6E-05 24.8 -1.2 40 5-46 15-59 (62)
176 1m3v_A FLIN4, fusion of the LI 47.8 12 0.0004 23.8 2.4 47 2-50 34-81 (122)
177 2cor_A Pinch protein; LIM doma 47.2 6.8 0.00023 23.0 1.1 37 2-50 17-53 (79)
178 1zfo_A LAsp-1; LIM domain, zin 47.0 4 0.00014 20.0 -0.0 27 2-31 5-31 (31)
179 2ct7_A Ring finger protein 31; 46.6 1.5 5E-05 26.8 -2.1 27 17-43 44-72 (86)
180 4bbq_A Lysine-specific demethy 46.2 1.5 5E-05 28.2 -2.3 31 16-46 75-113 (117)
181 3kv4_A PHD finger protein 8; e 46.1 3.5 0.00012 33.0 -0.5 45 5-49 9-58 (447)
182 2cuq_A Four and A half LIM dom 46.0 8.6 0.00029 22.3 1.4 35 3-49 18-52 (80)
183 1iml_A CRIP, cysteine rich int 45.3 4.5 0.00015 23.5 0.0 37 2-49 2-38 (76)
184 2ehe_A Four and A half LIM dom 43.7 8.8 0.0003 22.4 1.2 37 3-49 18-54 (82)
185 1x6a_A LIMK-2, LIM domain kina 43.6 7.5 0.00026 22.7 0.9 35 3-49 18-52 (81)
186 1v6g_A Actin binding LIM prote 43.5 7.3 0.00025 22.8 0.8 36 2-49 17-52 (81)
187 2egq_A FHL1 protein; LIM domai 43.4 9.2 0.00031 22.0 1.2 37 3-49 18-57 (77)
188 2pk7_A Uncharacterized protein 41.8 6.9 0.00023 23.1 0.4 18 33-50 3-20 (69)
189 2jrp_A Putative cytoplasmic pr 40.4 1.4 4.9E-05 27.0 -2.8 41 1-50 3-43 (81)
190 2l4z_A DNA endonuclease RBBP8, 40.3 6.6 0.00023 25.4 0.2 37 2-49 63-99 (123)
191 2dlo_A Thyroid receptor-intera 39.5 8.4 0.00029 22.5 0.6 35 3-49 18-52 (81)
192 2jny_A Uncharacterized BCR; st 39.0 6.2 0.00021 23.2 -0.1 20 32-51 4-23 (67)
193 1a7i_A QCRP2 (LIM1); LIM domai 38.6 5.9 0.0002 23.2 -0.2 38 2-50 9-46 (81)
194 1x3h_A Leupaxin; paxillin fami 37.0 9.8 0.00033 22.1 0.6 36 3-50 18-53 (80)
195 2fiy_A Protein FDHE homolog; F 36.7 2.5 8.5E-05 32.2 -2.6 44 2-47 184-231 (309)
196 1rut_X Flinc4, fusion protein 36.5 16 0.00055 25.0 1.8 9 40-48 71-79 (188)
197 2d8y_A Eplin protein; LIM doma 36.2 16 0.00056 21.8 1.6 38 2-50 17-54 (91)
198 2cup_A Skeletal muscle LIM-pro 36.2 14 0.00048 22.3 1.3 9 3-11 8-16 (101)
199 2iyb_E Testin, TESS, TES; LIM 35.8 13 0.00044 20.7 1.0 38 2-49 4-43 (65)
200 3pwf_A Rubrerythrin; non heme 33.0 19 0.00065 24.7 1.6 25 16-47 138-162 (170)
201 2lq6_A Bromodomain-containing 32.3 15 0.00052 22.4 0.9 31 1-33 18-50 (87)
202 2d8v_A Zinc finger FYVE domain 31.6 16 0.00056 21.4 0.9 27 3-34 11-38 (67)
203 3a1b_A DNA (cytosine-5)-methyl 30.9 28 0.00097 23.8 2.2 40 2-45 81-132 (159)
204 2pv0_B DNA (cytosine-5)-methyl 30.5 29 0.001 27.2 2.5 41 2-46 95-147 (386)
205 2xqn_T Testin, TESS; metal-bin 29.5 40 0.0014 21.1 2.7 43 2-49 32-74 (126)
206 4gut_A Lysine-specific histone 29.5 29 0.00099 29.4 2.5 35 2-37 15-56 (776)
207 2csz_A Synaptotagmin-like prot 29.1 21 0.00072 21.5 1.2 30 2-31 27-57 (76)
208 2jvx_A NF-kappa-B essential mo 29.0 12 0.00041 18.1 0.0 10 39-48 4-13 (28)
209 2jr6_A UPF0434 protein NMA0874 28.9 6.5 0.00022 23.1 -1.1 18 34-51 4-21 (68)
210 1j2o_A FLIN2, fusion of rhombo 28.5 25 0.00086 21.9 1.6 36 3-49 6-41 (114)
211 2lcq_A Putative toxin VAPC6; P 26.3 19 0.00064 24.2 0.7 26 18-49 134-159 (165)
212 2js4_A UPF0434 protein BB2007; 25.9 7 0.00024 23.1 -1.4 18 34-51 4-21 (70)
213 2hf1_A Tetraacyldisaccharide-1 24.9 6.5 0.00022 23.1 -1.7 14 38-51 8-21 (68)
214 1yuz_A Nigerythrin; rubrythrin 24.4 30 0.001 24.3 1.5 25 16-47 171-195 (202)
215 1lko_A Rubrerythrin all-iron(I 23.5 26 0.00088 24.3 0.9 25 17-47 156-180 (191)
216 2jyp_A Aragonite protein AP7; 23.1 31 0.001 17.1 0.9 13 2-14 11-23 (36)
217 1loi_A Cyclic 3',5'-AMP specif 22.8 6.8 0.00023 18.1 -1.4 12 25-36 6-17 (26)
218 1l8d_A DNA double-strand break 21.0 25 0.00087 21.9 0.5 12 38-49 47-58 (112)
219 1pft_A TFIIB, PFTFIIBN; N-term 20.8 57 0.0019 17.2 1.9 9 40-48 26-34 (50)
No 1
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=3.4e-16 Score=97.45 Aligned_cols=51 Identities=41% Similarity=0.984 Sum_probs=45.7
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccccC
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELVT 52 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 52 (129)
.+|+||++.|..+..+..++ |+|.||..||..|++.+..||+||..+....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 47999999999887778888 9999999999999999999999999886543
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.9e-16 Score=95.79 Aligned_cols=50 Identities=38% Similarity=0.942 Sum_probs=45.1
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
.+|+||++.|..+..+..++ |+|.||..||..|++.+..||+||..+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 37999999999888888888 999999999999999888999999988653
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.61 E-value=3.2e-16 Score=91.31 Aligned_cols=49 Identities=59% Similarity=1.296 Sum_probs=43.9
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.+|+||++.|..++....++.|+|.||..||..|++.+.+||+||+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4799999999987777788679999999999999999999999998763
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=6.6e-16 Score=93.97 Aligned_cols=50 Identities=44% Similarity=1.006 Sum_probs=44.8
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
.+|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+...
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 36999999998777778888 999999999999999989999999988654
No 5
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-16 Score=97.41 Aligned_cols=49 Identities=45% Similarity=1.080 Sum_probs=44.9
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
+|+||++.|..++.+..++ |+|.||..||..|++.+..||+||+.+...
T Consensus 25 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 25 LCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp EETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 6999999999888888899 999999999999999999999999987653
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.58 E-value=7.9e-16 Score=98.85 Aligned_cols=48 Identities=35% Similarity=0.967 Sum_probs=44.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+|+||++.|..++.+..++ |+|.||..||..|+..+.+||+||..+..
T Consensus 42 ~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 42 CCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 6999999998887788899 99999999999999999999999998753
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.55 E-value=4.2e-15 Score=98.62 Aligned_cols=52 Identities=29% Similarity=0.738 Sum_probs=41.3
Q ss_pred ccccccccccCCC---------------cceEeCCCCChhhHHhHHHHH-----hCCCCCCccCccccccCCC
Q 033041 2 DCAVCLSEFEENE---------------SGRVLPGCNHSFHIGCIDMWF-----HSHSTCPLCRTPVELVTAQ 54 (129)
Q Consensus 2 ~C~IC~~~~~~~~---------------~~~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~~~~~~~~~ 54 (129)
+|+||++.|..+. .+.+++ |+|.||..||..|+ ..+.+||+||..+......
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~ 98 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGT 98 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCC
Confidence 6999999996643 222566 99999999999999 4567999999988765443
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-15 Score=95.21 Aligned_cols=50 Identities=32% Similarity=0.824 Sum_probs=40.8
Q ss_pred ccccccccccC-----------CCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 2 DCAVCLSEFEE-----------NESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 2 ~C~IC~~~~~~-----------~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
+|+||++.|.. .+.+..++.|+|.||..||..||..+.+||+||+++...
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 58888888854 334556656999999999999999999999999987643
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.50 E-value=9.7e-15 Score=84.84 Aligned_cols=48 Identities=31% Similarity=0.832 Sum_probs=40.6
Q ss_pred CccccccccccCCC-cceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 1 MDCAVCLSEFEENE-SGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~~-~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.+|+||++.|.... ....++ |+|.||..||..|+.....||+||..+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 36999999986543 456666 9999999999999998899999998763
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=7.2e-15 Score=89.55 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=42.0
Q ss_pred CccccccccccCC----CcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEEN----ESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
++|+||++.|..+ .....++ |||.||..||..|+..+..||+||..+...
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4799999998764 3345666 999999999999999999999999988643
No 11
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.49 E-value=1.7e-14 Score=95.40 Aligned_cols=49 Identities=31% Similarity=0.706 Sum_probs=41.1
Q ss_pred ccccccccccCCC---------------cceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 2 DCAVCLSEFEENE---------------SGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 2 ~C~IC~~~~~~~~---------------~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
+|+||++.|..+. .+..++ |+|.||..||..||..+.+||+||++|...
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 6999999987541 245566 999999999999999999999999987543
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.3e-15 Score=88.87 Aligned_cols=48 Identities=25% Similarity=0.675 Sum_probs=40.7
Q ss_pred CccccccccccCC----CcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 1 MDCAVCLSEFEEN----ESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
++|+||++.|..+ ..+..++ |||.||..||..|+..+..||+||..+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 4799999998764 2335667 9999999999999998899999998875
No 13
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.3e-14 Score=87.96 Aligned_cols=47 Identities=26% Similarity=0.619 Sum_probs=41.0
Q ss_pred CccccccccccCCCcceEe-CCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEENESGRVL-PGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
+.|+||++.|..+ ..+ + |||.||..||..|+..+..||+||..+...
T Consensus 16 ~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLIDA---TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSSC---EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHCc---CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 4799999999876 555 6 999999999999998889999999988654
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-14 Score=88.66 Aligned_cols=47 Identities=30% Similarity=0.606 Sum_probs=41.5
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
++|+||++.+..+ ..++ |||.||..||..|+..+..||+||..+...
T Consensus 16 ~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 16 PECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp CBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4799999998776 6777 999999999999999889999999988643
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=1.3e-14 Score=86.48 Aligned_cols=49 Identities=24% Similarity=0.649 Sum_probs=41.7
Q ss_pred CccccccccccCC----CcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEEN----ESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
++|+||++.+..+ .....++ |||.||..||..|+..+..||+||..+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 4799999998754 3345677 99999999999999988999999998764
No 16
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.46 E-value=2.2e-14 Score=98.47 Aligned_cols=46 Identities=35% Similarity=0.889 Sum_probs=41.2
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
++|+||++.|..+ +.++ |||.||..||..|+..+..||+||.++..
T Consensus 54 ~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4799999999776 6788 99999999999999999999999998753
No 17
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=9.7e-14 Score=86.19 Aligned_cols=48 Identities=23% Similarity=0.584 Sum_probs=40.4
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCC--CCCCccCccccccC
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSH--STCPLCRTPVELVT 52 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 52 (129)
+|+||++.|..+. ..+.|+|.||..||.+||+.+ .+||+|+..|....
T Consensus 17 ~C~IC~~~i~~g~---~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 17 ICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp BCSSSCCBCSSSE---ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred cCcchhhHcccCC---ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 7999999998663 333599999999999999887 79999999987543
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.3e-14 Score=86.60 Aligned_cols=46 Identities=37% Similarity=0.973 Sum_probs=40.6
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
++|+||++.+.. ..++ |||.||..||..|+..+..||+||..+...
T Consensus 16 ~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 479999999866 6778 999999999999999899999999987643
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=5.2e-14 Score=88.12 Aligned_cols=45 Identities=27% Similarity=0.684 Sum_probs=40.3
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
++|+||++.|..+ .+++ |||.||..||..|+.....||+||..+.
T Consensus 16 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4799999999776 5677 9999999999999998889999999874
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.42 E-value=8.9e-14 Score=85.83 Aligned_cols=46 Identities=26% Similarity=0.618 Sum_probs=39.2
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCC--CCCCccCcccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSH--STCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 49 (129)
+.|+||++.|..+ ..++.|||.||..||..|+..+ ..||+||..+.
T Consensus 16 ~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 16 LLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4799999999877 5666699999999999999764 68999998654
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=84.83 Aligned_cols=46 Identities=30% Similarity=0.751 Sum_probs=39.3
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHh---CCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH---SHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~~~~~ 50 (129)
++|+||++.|..+ ..++ |||.||..||..|+. ....||+||..+..
T Consensus 21 ~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 21 VICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4799999998865 6667 999999999999997 35589999998754
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=83.56 Aligned_cols=46 Identities=20% Similarity=0.536 Sum_probs=39.3
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHh-CCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH-SHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~ 50 (129)
++|+||++.+..+ ..++ |||.||..||..|+. ....||+||..+..
T Consensus 16 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp EECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3699999999877 4467 999999999999994 56789999998764
No 23
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.40 E-value=7.9e-14 Score=90.87 Aligned_cols=46 Identities=28% Similarity=0.930 Sum_probs=40.0
Q ss_pred CccccccccccCCCcceE-eCCCCChhhHHhHHHHHhCC-CCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRV-LPGCNHSFHIGCIDMWFHSH-STCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~-lp~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 50 (129)
+.|+||++.|..+ .. ++ |||.||..||..|+... ..||+||.++..
T Consensus 23 ~~C~IC~~~~~~p---~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRDA---RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccCc---cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 5799999999876 55 66 99999999999999877 699999998854
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=86.98 Aligned_cols=49 Identities=24% Similarity=0.800 Sum_probs=41.3
Q ss_pred CccccccccccCCCc-ceEeCCCCChhhHHhHHHHHhCC---CCCCccCccccc
Q 033041 1 MDCAVCLSEFEENES-GRVLPGCNHSFHIGCIDMWFHSH---STCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~-~~~lp~C~H~Fh~~Ci~~wl~~~---~~CP~Cr~~~~~ 50 (129)
++|+||++.|...+. ...++ |||.||..||..|+..+ ..||+||..+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 479999999987543 46677 99999999999999865 689999998754
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.4e-13 Score=85.40 Aligned_cols=46 Identities=17% Similarity=0.561 Sum_probs=40.7
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhC-CCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS-HSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 50 (129)
+.|+||++.|..+ ..++ |||.||..||..|+.. +..||+||..+..
T Consensus 9 ~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 9 FRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 5799999999877 6677 9999999999999987 7799999998754
No 26
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=88.39 Aligned_cols=46 Identities=24% Similarity=0.735 Sum_probs=40.5
Q ss_pred CccccccccccCCCcceEe-CCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVL-PGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
++|+||++.|..+ ..+ + |||.||..||..|+..+..||+||..+..
T Consensus 23 ~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNIA---MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSSE---EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCCc---CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4799999999875 555 6 99999999999999988999999998764
No 27
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.38 E-value=3.6e-14 Score=95.37 Aligned_cols=49 Identities=31% Similarity=0.706 Sum_probs=0.0
Q ss_pred ccccccccccCCC---------------cceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 2 DCAVCLSEFEENE---------------SGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 2 ~C~IC~~~~~~~~---------------~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
.|+||++.|..+. .+..++ |+|.||..||..||..+.+||+||.+|...
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 6999999997531 122245 999999999999999999999999987643
No 28
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.38 E-value=3.8e-13 Score=81.26 Aligned_cols=47 Identities=40% Similarity=0.980 Sum_probs=40.4
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.+|+||++.+..+ ...++ |||.||..||..|+..+..||+||..+..
T Consensus 6 ~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 6 ERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3699999998653 35667 99999999999999988999999998764
No 29
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=85.86 Aligned_cols=49 Identities=29% Similarity=0.746 Sum_probs=40.6
Q ss_pred ccccccccccCCCcceEeCCCC-----ChhhHHhHHHHHhCC--CCCCccCccccccC
Q 033041 2 DCAVCLSEFEENESGRVLPGCN-----HSFHIGCIDMWFHSH--STCPLCRTPVELVT 52 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~ 52 (129)
+|.||++++...+.+ ++| |+ |.||..||.+||..+ .+||+||..|....
T Consensus 17 ~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 17 ICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp CCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 699999998766554 678 86 999999999999764 48999999886543
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=2.9e-13 Score=84.65 Aligned_cols=46 Identities=37% Similarity=0.917 Sum_probs=40.3
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhC------CCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS------HSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 50 (129)
++|+||++.|..+ ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 20 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4799999999877 5777 9999999999999976 6689999998764
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=84.04 Aligned_cols=46 Identities=30% Similarity=0.772 Sum_probs=40.2
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhC------CCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS------HSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 50 (129)
++|+||++.|..+ ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 20 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4799999999876 5667 9999999999999976 6789999998865
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-13 Score=85.67 Aligned_cols=46 Identities=30% Similarity=0.733 Sum_probs=39.9
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhC-------CCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS-------HSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-------~~~CP~Cr~~~~~ 50 (129)
++|+||++.|..+ ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 13 VTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4799999999876 5577 9999999999999976 5689999998864
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.36 E-value=3.2e-13 Score=88.89 Aligned_cols=46 Identities=28% Similarity=0.707 Sum_probs=40.7
Q ss_pred CccccccccccCCCcceEe-CCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVL-PGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+.|+||++.|..+ ..+ + |||.||..||..|+..+..||+||..+..
T Consensus 16 ~~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFIDA---TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCSSE---EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCCccCChHHhCc---CEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 5799999999775 555 6 99999999999999998999999998754
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.36 E-value=4.6e-13 Score=90.12 Aligned_cols=46 Identities=24% Similarity=0.577 Sum_probs=39.9
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCC-CCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSH-STCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 50 (129)
+.|+||++.|..+ ..++ |||.||..||..|+..+ ..||+||..+..
T Consensus 53 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4799999999876 6677 99999999999999854 489999998854
No 35
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.2e-13 Score=79.67 Aligned_cols=40 Identities=30% Similarity=0.803 Sum_probs=35.1
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHh---CCCCCCcc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH---SHSTCPLC 44 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~C 44 (129)
++|+||++.|..+ ..++ |||.||..||..|++ ....||+|
T Consensus 21 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 21 VICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4799999999876 6677 999999999999997 45689998
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.33 E-value=4.5e-13 Score=90.15 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=42.5
Q ss_pred CccccccccccCC----CcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEEN----ESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
++|+||++.|..+ .....++ |||.||..||..|++.+..||+||..+...
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 5799999999764 3446677 999999999999999999999999988543
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.32 E-value=6.8e-13 Score=84.71 Aligned_cols=46 Identities=26% Similarity=0.622 Sum_probs=38.9
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhC--CCCCCccCcccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS--HSTCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 49 (129)
+.|+||++.|..+ ..++.|||.||..||..|+.. ...||+||..+.
T Consensus 14 ~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 14 LLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 5799999999887 566559999999999999964 358999998863
No 38
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=1.4e-12 Score=85.87 Aligned_cols=46 Identities=28% Similarity=0.737 Sum_probs=39.4
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCC---CCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSH---STCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~---~~CP~Cr~~~~~ 50 (129)
++|+||++.|..+ ..++ |||.||..||..|+... ..||+||..+..
T Consensus 22 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4799999999776 5567 99999999999999865 389999998764
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=76.81 Aligned_cols=40 Identities=35% Similarity=1.023 Sum_probs=34.3
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHh---CCCCCCcc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH---SHSTCPLC 44 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~C 44 (129)
+.|+||++.+..+ ..++ |||.||..||..|+. ....||+|
T Consensus 16 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4799999999877 5577 999999999999954 46689998
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=1.9e-12 Score=77.72 Aligned_cols=49 Identities=27% Similarity=0.687 Sum_probs=39.3
Q ss_pred Cccccccc-cccCCCcce-EeCCCCChhhHHhHHHHHhC-CCCCCccCccccc
Q 033041 1 MDCAVCLS-EFEENESGR-VLPGCNHSFHIGCIDMWFHS-HSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~-~~~~~~~~~-~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 50 (129)
++|+||++ .+..+.... .++ |||.||..||..|+.. ...||+||..+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 787765433 456 9999999999999765 4679999998754
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.30 E-value=9e-13 Score=92.72 Aligned_cols=45 Identities=29% Similarity=0.675 Sum_probs=39.3
Q ss_pred ccccccccccCCCcceEe-CCCCChhhHHhHHHHHhC-CCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVL-PGCNHSFHIGCIDMWFHS-HSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 50 (129)
.|+||++.|..+ ..+ + |||.||..||..|+.. +..||+||..+..
T Consensus 56 ~C~IC~~~~~~p---~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 56 MCPICLDMLKNT---MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp BCTTTSSBCSSE---EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCcccChHhhCc---CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 799999999875 555 6 9999999999999987 7789999998753
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=90.67 Aligned_cols=47 Identities=21% Similarity=0.532 Sum_probs=40.7
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCC-CCCccCcccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHS-TCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 51 (129)
+.|+||++.|..+ ..++ |||.||..||..|+.... .||+||..+...
T Consensus 79 ~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4799999999877 6677 999999999999998754 899999988653
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.27 E-value=5.9e-13 Score=88.42 Aligned_cols=46 Identities=30% Similarity=0.747 Sum_probs=40.2
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhC-CCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS-HSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 50 (129)
++|+||++.|..+ ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 16 ~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3799999999877 6777 9999999999999976 6689999998764
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.24 E-value=3.4e-12 Score=84.85 Aligned_cols=47 Identities=28% Similarity=0.562 Sum_probs=40.7
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhC-CCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS-HSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 51 (129)
+.|+||++.|..+ ..++ |||.||..||..|+.. ...||+||..+...
T Consensus 24 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4799999999776 5677 9999999999999986 67999999987653
No 45
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.23 E-value=3.9e-12 Score=80.70 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=41.8
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+.|+||++.|.++ ++++ |||.|+..||..|+..+.+||+|+.++..
T Consensus 15 ~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 15 FRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred eECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 5799999999998 7788 99999999999999988899999988754
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.22 E-value=2.6e-12 Score=85.80 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=40.0
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCC-CCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHS-TCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 50 (129)
+.|+||++.|..+ ..++ |||.||..||..|+.... .||+||..+..
T Consensus 19 ~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4799999999876 6677 999999999999998754 99999998765
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.21 E-value=6.1e-12 Score=82.16 Aligned_cols=46 Identities=13% Similarity=0.087 Sum_probs=42.0
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+.|+||++.|.+| ++++ |||.|+..||..|+..+.+||+|+.++..
T Consensus 30 ~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 30 FRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred hCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 5799999999998 7888 99999999999999988899999988753
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.20 E-value=3.8e-12 Score=85.55 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=41.4
Q ss_pred CccccccccccCC----CcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEEN----ESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
++|+||++.|..+ .....++ |||.||..||..|++.+++||+||..+...
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4799999998653 2335666 999999999999999999999999988653
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.19 E-value=1e-11 Score=80.86 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=41.7
Q ss_pred CccccccccccCCCcceEeCCCC-ChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCN-HSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+.|+||++.|.++ ++++ || |.|+..||..||..+.+||+|+.++..
T Consensus 23 ~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 23 FLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 5799999999998 7788 99 999999999999988899999988753
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.18 E-value=5.3e-12 Score=84.18 Aligned_cols=43 Identities=30% Similarity=0.740 Sum_probs=38.1
Q ss_pred CccccccccccCCCcceEe-CCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 1 MDCAVCLSEFEENESGRVL-PGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
+.|+||++.|..+ ..+ + |||.||..||..|+. ..||+||..+.
T Consensus 23 ~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 5799999999877 566 6 999999999999987 78999999874
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.15 E-value=5.4e-11 Score=74.37 Aligned_cols=51 Identities=20% Similarity=0.474 Sum_probs=38.9
Q ss_pred CccccccccccCCCcce-EeCCCCChhhHHhHHHHHhC-CCCCCccCccccccC
Q 033041 1 MDCAVCLSEFEENESGR-VLPGCNHSFHIGCIDMWFHS-HSTCPLCRTPVELVT 52 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~-~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 52 (129)
++|+||++.+...+... -++ |||.||..|+..|+.. ...||+||.++....
T Consensus 12 ~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred CcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 47999999886433222 234 9999999999998754 568999999887543
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.12 E-value=8.5e-12 Score=86.11 Aligned_cols=45 Identities=18% Similarity=0.406 Sum_probs=39.0
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCC-CCCccCcccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHS-TCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~ 49 (129)
+.|+||++.|..+ ..++ |||.||..||..|+.... .||+||.++.
T Consensus 32 ~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 32 YLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred cCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4799999999887 5667 999999999999998654 8999998764
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.11 E-value=1.3e-11 Score=72.31 Aligned_cols=43 Identities=33% Similarity=0.881 Sum_probs=36.9
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+.|+||++.|..+ +.++ |||.||..||..| ...||+||..+..
T Consensus 7 ~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 7 LRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp SSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred CCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeec
Confidence 5799999999887 6788 9999999999774 5689999998764
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.09 E-value=3.6e-11 Score=72.31 Aligned_cols=45 Identities=20% Similarity=0.634 Sum_probs=38.4
Q ss_pred ccccccccccCCCcceEe--CCCCCh-hhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVL--PGCNHS-FHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~l--p~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+|.||++.+.+. ..+ | |||. ||..|+..|+..+..||+||.++..
T Consensus 10 ~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 10 PCVICQGRPKNG---CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp CCTTTSSSCSCE---EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCCcCCCCCCCE---EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 699999987554 554 8 9999 8999999999988899999998753
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.08 E-value=5e-11 Score=94.23 Aligned_cols=46 Identities=24% Similarity=0.756 Sum_probs=40.5
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHh-CCCCCCccCcccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH-SHSTCPLCRTPVELV 51 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 51 (129)
+|+||++.+..+ ..++ |||.||..|+..|+. ....||+||..+...
T Consensus 334 ~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 334 LCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp BCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 799999998665 7788 999999999999998 678999999988653
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.07 E-value=3.4e-11 Score=74.28 Aligned_cols=42 Identities=24% Similarity=0.636 Sum_probs=36.5
Q ss_pred CccccccccccCCCcceEeCCCCCh-hhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHS-FHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+.|+||++.+..+ ..+| |||. ||..|+..| ..||+||..+..
T Consensus 25 ~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4799999998765 7778 9999 999999998 789999998754
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.04 E-value=7.2e-11 Score=70.75 Aligned_cols=45 Identities=18% Similarity=0.592 Sum_probs=38.0
Q ss_pred ccccccccccCCCcceEe--CCCCCh-hhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVL--PGCNHS-FHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~l--p~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+|.||++.+.+. .++ | |||. ||..|+..|...+..||+||.++..
T Consensus 9 ~C~IC~~~~~~~---~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 9 PCSLCEKRPRDG---NIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp BCTTTSSSBSCE---EEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCcccCCcCCCe---EEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 699999986554 444 8 9998 9999999999888899999998753
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=9.3e-11 Score=75.48 Aligned_cols=44 Identities=20% Similarity=0.481 Sum_probs=37.5
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCC------CCCCc--cCcc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSH------STCPL--CRTP 47 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~------~~CP~--Cr~~ 47 (129)
+.|+||++.|.+| ++++.|||.|+..||..||..+ .+||+ |+..
T Consensus 8 ~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 8 FTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred eECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 5799999999987 6664599999999999999753 48999 9865
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.01 E-value=1.1e-10 Score=87.25 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=40.3
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhC-CCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS-HSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 50 (129)
+.|+||++.|.+| ++++ |||+||..||..|+.. ..+||+|+.++..
T Consensus 209 ~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 209 LCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp TBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 5799999999988 7788 9999999999999976 4469999988754
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.99 E-value=1e-10 Score=82.36 Aligned_cols=46 Identities=26% Similarity=0.591 Sum_probs=39.8
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCC-CCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSH-STCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 50 (129)
+.|+||++.|..+ +.++ |||.||..||..|+... ..||+||..+..
T Consensus 19 ~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4799999999887 6677 99999999999999764 499999988765
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.91 E-value=1.6e-10 Score=89.91 Aligned_cols=49 Identities=20% Similarity=0.624 Sum_probs=37.1
Q ss_pred ccccccccccCCCcc----eEeCCCCChhhHHhHHHHHhCC-----------CCCCccCccccc
Q 033041 2 DCAVCLSEFEENESG----RVLPGCNHSFHIGCIDMWFHSH-----------STCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~----~~lp~C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~ 50 (129)
+|+||++.+.....+ ...+.|+|.||..||.+||++. ..||+||.++..
T Consensus 310 ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 799999998762221 1223599999999999999652 369999998753
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=5.3e-10 Score=68.90 Aligned_cols=41 Identities=24% Similarity=0.668 Sum_probs=34.5
Q ss_pred ccccccccccCCCcceEeCCCCCh-hhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHS-FHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+|+||++.+..+ ..+| |||. ||..|+.. ...||+||.++..
T Consensus 27 ~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 699999998665 6678 9999 99999965 3689999998754
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.89 E-value=5.4e-10 Score=80.00 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=40.1
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhC-CCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS-HSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 50 (129)
+.|+||++.|.+| ++++ |||+|+..||..|+.. +.+||+|+.++..
T Consensus 107 f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 107 LCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4799999999988 7778 9999999999999976 3479999988754
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=6.8e-10 Score=71.15 Aligned_cols=46 Identities=22% Similarity=0.624 Sum_probs=36.9
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhC--------CCCCCc--cCcc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS--------HSTCPL--CRTP 47 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~ 47 (129)
++|+||++.+..+..+.+.+ |||.||..|+..|+.. ...||. |+..
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 57999999987764444456 9999999999999853 237999 9987
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.80 E-value=1.1e-09 Score=68.34 Aligned_cols=43 Identities=37% Similarity=0.784 Sum_probs=36.0
Q ss_pred CccccccccccCCCcceEeCCCCCh-hhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHS-FHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
..|.||++.+... ..+| |||. ||..|+..| ..||+||..+...
T Consensus 19 ~~C~IC~~~~~~~---v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 19 MLCMVCCEEEINS---TFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp TBCTTTSSSBCCE---EEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CEeEEeCcccCcE---EEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 3699999987665 7788 9999 999999876 3899999988653
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.74 E-value=3.3e-09 Score=79.84 Aligned_cols=47 Identities=23% Similarity=0.601 Sum_probs=38.8
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCC--CCCCc--cCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSH--STCPL--CRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~--Cr~~~~~ 50 (129)
+.|+||++.|..| +....|||.|+..||..|+..+ ..||+ |+..+..
T Consensus 182 l~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 182 LTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 5799999999887 4442399999999999999764 47999 9987653
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=5.4e-09 Score=63.44 Aligned_cols=43 Identities=35% Similarity=0.824 Sum_probs=35.3
Q ss_pred CccccccccccCCCcceEeCCCCCh-hhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHS-FHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
..|.||++.+... ..+| |||. ||..|+.. ...||+||..+...
T Consensus 16 ~~C~IC~~~~~~~---v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 16 KDCVVCQNGTVNW---VLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp SCCSSSSSSCCCC---EETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCcCcCCCCE---EEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3699999987654 7788 9999 99999984 46899999988643
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.70 E-value=7.2e-09 Score=61.52 Aligned_cols=45 Identities=24% Similarity=0.755 Sum_probs=34.5
Q ss_pred ccccccccccCCCcceEeC-CCCC---hhhHHhHHHHHhC--CCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLP-GCNH---SFHIGCIDMWFHS--HSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp-~C~H---~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 49 (129)
.|.||++.... . .++| +|.| .||..||.+|+.. +.+||+|+..+.
T Consensus 8 ~CrIC~~~~~~--~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 8 VCWICNEELGN--E-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp EETTTTEECSC--C-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred EeEEeecCCCC--c-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 69999997433 2 3567 2444 9999999999964 678999998875
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.69 E-value=5.7e-09 Score=62.14 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=41.2
Q ss_pred CccccccccccCCCcceEe-CCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 1 MDCAVCLSEFEENESGRVL-PGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
+.|+|+++.|.++ .+. + +||.|...||.+|+..+.+||+.+.++...
T Consensus 4 ~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred EEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 4699999999887 666 5 999999999999998888899999888653
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.64 E-value=5e-09 Score=81.80 Aligned_cols=42 Identities=26% Similarity=0.663 Sum_probs=36.6
Q ss_pred CccccccccccCCCcceEeCCCCCh-hhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHS-FHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+.|+||++.+..+ ..+| |||. ||..|+..| ..||+||..+..
T Consensus 296 ~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4799999998766 7778 9999 999999987 689999998754
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.61 E-value=4.2e-08 Score=72.98 Aligned_cols=48 Identities=23% Similarity=0.587 Sum_probs=40.6
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCC--CCCccCccccccC
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHS--TCPLCRTPVELVT 52 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~--~CP~Cr~~~~~~~ 52 (129)
+|.||.+.+..+ ...++|+|.||..|+..|++.+. .||.|+..|....
T Consensus 182 ~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 182 ICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp BCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred cCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 699999998876 56666999999999999997654 8999999886553
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.30 E-value=4.7e-07 Score=58.64 Aligned_cols=47 Identities=30% Similarity=0.701 Sum_probs=37.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC-CCCCCccCcccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS-HSTCPLCRTPVELV 51 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~ 51 (129)
.|.+|--.+.. ..+++| |+|.||..|+..|.+. .+.||.|+.++...
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 47777665532 457889 9999999999999854 68999999988643
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.17 E-value=0.0007 Score=43.18 Aligned_cols=48 Identities=21% Similarity=0.574 Sum_probs=35.9
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccccCCC
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELVTAQ 54 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~ 54 (129)
.|..||-.... ++.-..|.+|..|+.-.|.....||+|+.++......
T Consensus 30 nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 30 FCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 57778766432 2221569999999999999999999999988655443
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.52 E-value=0.009 Score=35.56 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=30.9
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 47 (129)
.|.||.+. ..+.....|...||..|+...|.. ...||.|...
T Consensus 14 ~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 14 RCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 58899753 234555569999999999887754 3479999754
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.52 E-value=0.0053 Score=38.90 Aligned_cols=33 Identities=15% Similarity=0.420 Sum_probs=23.0
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHH
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMW 34 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 34 (129)
+.|.||.+.+..+....-+. |+|.||..|+..+
T Consensus 4 ~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 47999997643221112255 9999999999983
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.65 E-value=0.0049 Score=36.15 Aligned_cols=45 Identities=22% Similarity=0.509 Sum_probs=31.2
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHh-----CCCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH-----SHSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~ 46 (129)
.|+||...+......+....|..+||..|+.--.. ....||.|+.
T Consensus 8 ~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 8 QCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 58899887754444444446999999999853221 3568999965
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.77 E-value=0.03 Score=39.79 Aligned_cols=46 Identities=17% Similarity=0.436 Sum_probs=33.3
Q ss_pred ccccccccccCCCc---ceEeCCCCChhhHHhHHH------HHh-----CCCCCCccCcc
Q 033041 2 DCAVCLSEFEENES---GRVLPGCNHSFHIGCIDM------WFH-----SHSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~---~~~lp~C~H~Fh~~Ci~~------wl~-----~~~~CP~Cr~~ 47 (129)
.|+||...+..++. .+....|..+||..|+.- -+. ....||.|+..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 69999998877652 455556999999999742 111 15799999764
No 78
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=92.74 E-value=0.055 Score=32.97 Aligned_cols=46 Identities=22% Similarity=0.412 Sum_probs=29.8
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHH-----hCCCCCCccCccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWF-----HSHSTCPLCRTPV 48 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~~~ 48 (129)
.| ||...+......+....|..+||..|+.--. .....||.|+...
T Consensus 14 ~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred EE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 35 7877664333444444699999999985221 1356899997643
No 79
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=92.62 E-value=0.094 Score=29.35 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=28.2
Q ss_pred cccccccccCCCcceEeC-CCCChhhHHhHHHH----HhCCCCCCccC
Q 033041 3 CAVCLSEFEENESGRVLP-GCNHSFHIGCIDMW----FHSHSTCPLCR 45 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp-~C~H~Fh~~Ci~~w----l~~~~~CP~Cr 45 (129)
|.||...+......+... .|..+||..|+.-- ......||.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 568888775444444444 48889999997521 13567899885
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=92.58 E-value=0.037 Score=33.29 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=31.8
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHh----CCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH----SHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~----~~~~CP~Cr~~~~ 49 (129)
.|.||..... ++..+....|.-+||..|+..-+. ....||.|...+.
T Consensus 20 ~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 20 ICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4889977643 333444456999999999975443 2457999976553
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.43 E-value=0.43 Score=29.96 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=34.6
Q ss_pred ccccccccccCCC---cceEeCCCCChhhHHhHHHHH-hCCCCCCccCcccccc
Q 033041 2 DCAVCLSEFEENE---SGRVLPGCNHSFHIGCIDMWF-HSHSTCPLCRTPVELV 51 (129)
Q Consensus 2 ~C~IC~~~~~~~~---~~~~lp~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~~~ 51 (129)
.|.||-+.+.... ..+..-.|+--.|..|+.--. ..+..||.|++.+...
T Consensus 18 iCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 18 FCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp BCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred ccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 5999999864322 222222478789999987544 4477899999998644
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=91.33 E-value=0.13 Score=30.33 Aligned_cols=31 Identities=23% Similarity=0.668 Sum_probs=24.5
Q ss_pred ccccccccccCCCcceEeC-CCCChhhHHhHH
Q 033041 2 DCAVCLSEFEENESGRVLP-GCNHSFHIGCID 32 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp-~C~H~Fh~~Ci~ 32 (129)
.|++|...+......+... .|.-+||..|+.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4899999887665556655 699999999984
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.55 E-value=0.17 Score=31.49 Aligned_cols=13 Identities=38% Similarity=0.991 Sum_probs=12.2
Q ss_pred CCChhhHHhHHHH
Q 033041 22 CNHSFHIGCIDMW 34 (129)
Q Consensus 22 C~H~Fh~~Ci~~w 34 (129)
|+-+||..|+.+.
T Consensus 35 C~RvfH~~CL~r~ 47 (89)
T 1wil_A 35 CTRVFHDGCLRRM 47 (89)
T ss_dssp SSSCCCHHHHHHH
T ss_pred ccccccHhhcccc
Confidence 8999999999986
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.53 E-value=0.11 Score=30.04 Aligned_cols=41 Identities=24% Similarity=0.622 Sum_probs=28.5
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 46 (129)
.|.||... ..+.....|...||..|+..-+.. ...||.|..
T Consensus 13 ~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 13 YCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 47788763 234444468899999999875432 347999965
No 85
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.32 E-value=0.072 Score=32.11 Aligned_cols=45 Identities=20% Similarity=0.446 Sum_probs=28.7
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHH---------HhCCCCCCccCccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMW---------FHSHSTCPLCRTPV 48 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~w---------l~~~~~CP~Cr~~~ 48 (129)
.| ||...... ...+....|..+||..|+.-- ......||.|+...
T Consensus 18 ~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 18 YC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred EE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 35 78776542 233333459999999998421 12467899997543
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.20 E-value=0.087 Score=34.17 Aligned_cols=45 Identities=22% Similarity=0.591 Sum_probs=30.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 46 (129)
.|.||...-...+.+.....|...||..|+.+-|.. ...||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 477787643333344555569999999999765543 347999974
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.86 E-value=0.14 Score=28.33 Aligned_cols=44 Identities=27% Similarity=0.636 Sum_probs=29.7
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 46 (129)
.|.||...-. .+.+.....|...||..|+..=+.. ...||.|..
T Consensus 2 ~C~vC~~~~~-~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGE-DDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSC-CSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCC-CCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5889987532 2344555569999999999754433 346999964
No 88
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=89.30 E-value=0.15 Score=32.83 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=32.1
Q ss_pred ccccccccccCCCcceEeC-CCCChhhHHhHHHH------H----hCCCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLP-GCNHSFHIGCIDMW------F----HSHSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp-~C~H~Fh~~Ci~~w------l----~~~~~CP~Cr~~ 47 (129)
.|+||...+......+..- .|..+||..|+.-- + .....||.|+..
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 5999999876554445553 58999999998421 1 034589999764
No 89
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=88.85 E-value=0.036 Score=33.23 Aligned_cols=45 Identities=27% Similarity=0.445 Sum_probs=28.7
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHH----hCCCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWF----HSHSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl----~~~~~CP~Cr~~ 47 (129)
.| ||......+...+....|..+||..|+.--. .....||.|+..
T Consensus 18 ~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred Ee-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 36 6776654443344444699999999985432 235679999754
No 90
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=88.38 E-value=0.089 Score=32.79 Aligned_cols=48 Identities=17% Similarity=0.337 Sum_probs=32.8
Q ss_pred ccccccccccC-CCcceEeCCCCChhhHHhHHHHHh--------CCCCCCccCcccc
Q 033041 2 DCAVCLSEFEE-NESGRVLPGCNHSFHIGCIDMWFH--------SHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl~--------~~~~CP~Cr~~~~ 49 (129)
.|.||...-.. ...+.....|...||..|+..-|. ....|+.|.....
T Consensus 18 ~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 18 ACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred cCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 58999876332 234455556999999999986543 2457999976543
No 91
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.20 E-value=0.28 Score=42.82 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=39.9
Q ss_pred CccccccccccCCCcceEeCCCC-ChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCN-HSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+.|||-++.|.+| +++| -| +.|-...|..|+..+.+||+=|.++..
T Consensus 892 F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 892 FLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred hCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3599999999988 7888 76 689999999999999999998887754
No 92
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=87.90 E-value=0.2 Score=34.61 Aligned_cols=45 Identities=20% Similarity=0.516 Sum_probs=30.2
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHH-----hCCCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWF-----HSHSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~~ 47 (129)
.| ||..........+....|..+||..|+.--. .....||.|+..
T Consensus 10 ~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 10 YC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred Ee-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 47 8887754443444555699999999985211 235689999764
No 93
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=87.76 E-value=0.089 Score=33.44 Aligned_cols=43 Identities=19% Similarity=0.430 Sum_probs=28.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC---CCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS---HSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~ 46 (129)
.| ||......+ ..+....|.-+||..|+..-+.. ...||.|+.
T Consensus 30 rC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred Ee-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 46 776654433 34444569999999998653322 458999963
No 94
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=86.43 E-value=0.1 Score=31.02 Aligned_cols=43 Identities=21% Similarity=0.547 Sum_probs=26.9
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHH---hCCCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWF---HSHSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl---~~~~~CP~Cr~ 46 (129)
.| ||..... +...+....|..+||..|+.--. .....||.|+.
T Consensus 21 ~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 21 TC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred Ee-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 46 7876544 32334444699999999985322 12457888864
No 95
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=86.16 E-value=0.15 Score=35.66 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=30.3
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 47 (129)
.|.||.+. ..+.....|.-.||..|+..-+.. ...||.|+..
T Consensus 6 ~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 6 WCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred ccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 48899754 234555569999999999776543 3479999864
No 96
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.05 E-value=0.13 Score=31.24 Aligned_cols=44 Identities=27% Similarity=0.530 Sum_probs=26.6
Q ss_pred ccccccccccCCCcceEeC--CCCChhhHHhHHHHH---------hCCCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLP--GCNHSFHIGCIDMWF---------HSHSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp--~C~H~Fh~~Ci~~wl---------~~~~~CP~Cr~~ 47 (129)
.| ||......+ ..+..- .|..+||..|+.--- .....||.|+..
T Consensus 18 ~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 18 RC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred Ee-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 35 676653222 223333 499999999985321 135689999753
No 97
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=86.04 E-value=0.11 Score=30.14 Aligned_cols=42 Identities=29% Similarity=0.603 Sum_probs=28.1
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 47 (129)
.|.||.+. ..+.....|...||..|+..-+.. ...||.|...
T Consensus 11 ~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 11 FCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 48888752 233444458899999999864433 3469999654
No 98
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.65 E-value=1.1 Score=28.76 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=21.7
Q ss_pred ccccccccc-----cCCCcceEeCCCCChhhHHhHH
Q 033041 2 DCAVCLSEF-----EENESGRVLPGCNHSFHIGCID 32 (129)
Q Consensus 2 ~C~IC~~~~-----~~~~~~~~lp~C~H~Fh~~Ci~ 32 (129)
.|.+|+..- ..++.+..-..|+..||..||.
T Consensus 7 ~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp SBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 488887652 1233455555799999999995
No 99
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=85.16 E-value=0.15 Score=36.45 Aligned_cols=43 Identities=28% Similarity=0.468 Sum_probs=30.4
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRTPV 48 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 48 (129)
.|.+|... ..+.....|...||..|+.+-+.. ...||.|+..-
T Consensus 9 ~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 9 WCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 48888753 234455569999999999776643 34799997643
No 100
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=85.13 E-value=0.53 Score=27.23 Aligned_cols=41 Identities=27% Similarity=0.596 Sum_probs=28.1
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCcc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLC 44 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~C 44 (129)
|-.|...|... .....++|++.||.+|=.---+.-..||-|
T Consensus 18 C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 18 CYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp ETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred ccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 77777777432 223466799999999964433445689988
No 101
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=84.69 E-value=0.34 Score=30.49 Aligned_cols=41 Identities=22% Similarity=0.547 Sum_probs=25.1
Q ss_pred ccccccccccCCCcceEeCC--CC-ChhhHHhHHHHHhC----CCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLPG--CN-HSFHIGCIDMWFHS----HSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 47 (129)
.| ||..... + ..+...+ |. .+||..|+. |.. ...||.|+..
T Consensus 38 yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 38 YC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred EE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 36 7876532 2 2233334 55 699999996 322 4579999754
No 102
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.77 E-value=1.1 Score=27.59 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=26.8
Q ss_pred CccccccccccCCCcceEeC-CCCChhhHHhHHHHHhC
Q 033041 1 MDCAVCLSEFEENESGRVLP-GCNHSFHIGCIDMWFHS 37 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp-~C~H~Fh~~Ci~~wl~~ 37 (129)
+-|.+|.+.+++. ..+..| .=.|.||..|-...++.
T Consensus 16 l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 16 LCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHH
T ss_pred eEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHh
Confidence 4699999998765 334444 34699999999988865
No 103
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=81.99 E-value=0.66 Score=27.62 Aligned_cols=41 Identities=22% Similarity=0.547 Sum_probs=24.9
Q ss_pred ccccccccccCCCcceEeCC--CC-ChhhHHhHHHHHhC----CCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLPG--CN-HSFHIGCIDMWFHS----HSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 47 (129)
.| ||..... + ..+..-+ |. .+||..|+. |.. ...||.|+..
T Consensus 18 ~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 18 YC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred EE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 36 7776432 2 2222234 65 699999996 322 4479999754
No 104
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.02 E-value=0.11 Score=29.39 Aligned_cols=40 Identities=25% Similarity=0.655 Sum_probs=26.9
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccC
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCR 45 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr 45 (129)
.|.||... ..+.....|...||..|+..-|.. ...||.|.
T Consensus 11 ~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 11 FCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 48888764 234444568899999999864433 33688874
No 105
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=80.78 E-value=0.19 Score=29.43 Aligned_cols=41 Identities=27% Similarity=0.651 Sum_probs=28.5
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 46 (129)
.|.||.+. ..+.....|...||..|+..-|.. ...||.|..
T Consensus 10 ~C~vC~~~----g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 10 ECAVCRDG----GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SBSSSSCC----SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCccCCCC----CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 58899864 234455568899999999854433 346999964
No 106
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=80.55 E-value=1.4 Score=34.54 Aligned_cols=46 Identities=13% Similarity=0.419 Sum_probs=27.3
Q ss_pred CccccccccccCCCcceEeCCCCChhhHH--hHHHHHhC--CCCCCccCcccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIG--CIDMWFHS--HSTCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~--Ci~~wl~~--~~~CP~Cr~~~~ 49 (129)
|.|+|-+..|..+ ++.. .|.|.-|.+ -+..+... ...||+|.+.+.
T Consensus 250 L~CPlS~~ri~~P--vRg~-~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYP--SKSI-NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSE--EEET-TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCcccccccc--CcCC-cCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4678777776665 3333 499984433 23222222 457999988763
No 107
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=79.05 E-value=1.5 Score=34.09 Aligned_cols=46 Identities=17% Similarity=0.362 Sum_probs=27.3
Q ss_pred CccccccccccCCCcceEeCCCCCh--hhHHhHHHHHhC--CCCCCccCcccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHS--FHIGCIDMWFHS--HSTCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~--Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 49 (129)
|.|+|-+..|..| ++.. .|.|. |-..-+..+... ...||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P--~Rg~-~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAV-TCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSE--EEET-TCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccC--CcCC-CCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4577777776655 2333 49998 443333332222 457999998764
No 108
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=78.77 E-value=0.44 Score=28.55 Aligned_cols=43 Identities=21% Similarity=0.433 Sum_probs=27.6
Q ss_pred cccccccCCCcceEeCCCCChhhHHhHHHHHh-----CCCCCCccCcc
Q 033041 5 VCLSEFEENESGRVLPGCNHSFHIGCIDMWFH-----SHSTCPLCRTP 47 (129)
Q Consensus 5 IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~ 47 (129)
||...+......+....|.-+||..|+.--.. ....||.|+..
T Consensus 14 iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 67665543333444446999999999953221 34689999754
No 109
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=78.73 E-value=0.29 Score=28.00 Aligned_cols=43 Identities=23% Similarity=0.620 Sum_probs=29.5
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRTPV 48 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 48 (129)
.|.||... ..+.....|...||..|+..-+.. ...||.|....
T Consensus 7 ~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 7 FCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp SCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 48888764 234445569999999999864433 34699996544
No 110
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=78.27 E-value=1.3 Score=28.60 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=22.5
Q ss_pred cccccccccc------CCCcceEeCCCCChhhHHhHHHH
Q 033041 2 DCAVCLSEFE------ENESGRVLPGCNHSFHIGCIDMW 34 (129)
Q Consensus 2 ~C~IC~~~~~------~~~~~~~lp~C~H~Fh~~Ci~~w 34 (129)
.|.||+..-. .++.++.-..|+..||..|+...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 4889987541 12344555569999999998754
No 111
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=76.63 E-value=1.2 Score=27.80 Aligned_cols=41 Identities=24% Similarity=0.574 Sum_probs=28.7
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 46 (129)
.|.||... + .+.....|.-.||..|+.+=|.. ...||.|..
T Consensus 27 ~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 27 ICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp CCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred cCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 48888764 2 34444568889999999776543 347999974
No 112
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=76.45 E-value=0.54 Score=33.15 Aligned_cols=42 Identities=24% Similarity=0.543 Sum_probs=28.8
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 47 (129)
.|.+|... + .+.....|...||..|+.+=+.. ...||.|+..
T Consensus 4 ~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 4 ICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CBTTTCCC---S-SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred cCccCCCC---C-ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 58899854 2 23344458899999999765433 3479999754
No 113
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=76.11 E-value=0.57 Score=30.00 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=26.9
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccC
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCR 45 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr 45 (129)
.|.||.+.-.. ..+..-..|+..||..|+...+.. ...||.|+
T Consensus 9 ~C~~C~~~g~~-~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 9 NCAVCDSPGDL-LDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CBTTTCCCCCT-TTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCcCCCCCCCC-cCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 48889775322 122444469999999999876532 23455553
No 114
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=75.52 E-value=0.31 Score=29.63 Aligned_cols=43 Identities=30% Similarity=0.683 Sum_probs=26.1
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhC----C-CCCCccCc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----H-STCPLCRT 46 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~-~~CP~Cr~ 46 (129)
|.||...- .+..+.....|...||..|+..-|.. . -.||.|+.
T Consensus 29 C~vC~~~~-d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 29 CHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp BTTTCCCS-CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCccCCCC-CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 44555432 22233444468899999999865543 2 47998864
No 115
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=75.24 E-value=2.9 Score=28.27 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=26.8
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHh-----------CCCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH-----------SHSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----------~~~~CP~Cr~ 46 (129)
.|.||.+. ..+.....|-..||..||..-+. ....||+|..
T Consensus 65 ~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 65 QCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred eecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 46666653 22333345889999999996552 2447999963
No 116
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=75.13 E-value=0.29 Score=32.34 Aligned_cols=46 Identities=20% Similarity=0.491 Sum_probs=29.1
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 47 (129)
.|.+|...|..-..--..-.||.+||..|.........+|-.|...
T Consensus 21 ~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 21 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 5788888876432222333599999999987665556778888543
No 117
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=74.80 E-value=0.65 Score=28.79 Aligned_cols=46 Identities=17% Similarity=0.438 Sum_probs=30.0
Q ss_pred ccccccccc-cCCCcceEeCCCCChhhHHhHHHHH--hCCCCCCccCcc
Q 033041 2 DCAVCLSEF-EENESGRVLPGCNHSFHIGCIDMWF--HSHSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~-~~~~~~~~lp~C~H~Fh~~Ci~~wl--~~~~~CP~Cr~~ 47 (129)
.|.||...- ...+.+.....|.-.||..|+..-+ .....||.|...
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 588998753 2223444455688899999997532 124479999654
No 118
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=74.13 E-value=1.2 Score=25.63 Aligned_cols=46 Identities=20% Similarity=0.494 Sum_probs=31.0
Q ss_pred ccccccccccC-CCcceEeCCCCChhhHHhHHHHH-------hCCCCCCccCcc
Q 033041 2 DCAVCLSEFEE-NESGRVLPGCNHSFHIGCIDMWF-------HSHSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl-------~~~~~CP~Cr~~ 47 (129)
.|.||...... ...+.....|.-.||..|+..-+ .....|+.|...
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 58999876432 33445555799999999987533 134579999643
No 119
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=73.98 E-value=0.45 Score=26.43 Aligned_cols=41 Identities=20% Similarity=0.480 Sum_probs=25.1
Q ss_pred cccccccCCCcceEeCCCCChhhHHhHHHHH---hCCCCCCccCc
Q 033041 5 VCLSEFEENESGRVLPGCNHSFHIGCIDMWF---HSHSTCPLCRT 46 (129)
Q Consensus 5 IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl---~~~~~CP~Cr~ 46 (129)
||..... +...+....|...||..|+.--. .....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5665443 22333344599999999985322 23557988864
No 120
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=72.18 E-value=2.1 Score=28.18 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=21.1
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHH
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDM 33 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 33 (129)
.|.+|...|..-..--..-.||++||..|...
T Consensus 71 ~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 71 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 58888888864322122334999999998654
No 121
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=72.01 E-value=0.69 Score=26.54 Aligned_cols=39 Identities=23% Similarity=0.603 Sum_probs=23.2
Q ss_pred cccccccccCCCcceEeCC--CC-ChhhHHhHHHHHhC----CCCCCccCc
Q 033041 3 CAVCLSEFEENESGRVLPG--CN-HSFHIGCIDMWFHS----HSTCPLCRT 46 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~ 46 (129)
| ||..... + ..+...+ |. .+||..|+. |.. ...||.|..
T Consensus 13 C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 13 C-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp T-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred E-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 5 7776432 2 2233334 55 689999997 332 447998853
No 122
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=71.55 E-value=2.3 Score=26.27 Aligned_cols=48 Identities=17% Similarity=0.427 Sum_probs=29.7
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHh------CCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH------SHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~------~~~~CP~Cr~~~~ 49 (129)
.|.+|...|..-..--....||++||..|...++. ...+|-.|...+.
T Consensus 22 ~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 22 NCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 48888888764322223335999999999865431 1235777755443
No 123
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=70.47 E-value=0.82 Score=26.17 Aligned_cols=39 Identities=26% Similarity=0.611 Sum_probs=23.7
Q ss_pred cccccccccCCCcceEeCC--CC-ChhhHHhHHHHHhC----CCCCCccCc
Q 033041 3 CAVCLSEFEENESGRVLPG--CN-HSFHIGCIDMWFHS----HSTCPLCRT 46 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~ 46 (129)
| ||..... + ..+...+ |. .+||..|+. |.. ...||.|+.
T Consensus 12 C-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 12 C-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp T-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred E-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 5 7776532 2 2333334 66 699999997 322 347998854
No 124
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=69.96 E-value=0.72 Score=27.33 Aligned_cols=43 Identities=30% Similarity=0.683 Sum_probs=25.9
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhC-----CCCCCccCc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS-----HSTCPLCRT 46 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 46 (129)
|.||...- .+..+.....|...||..|+.+=|.. .-.||.|..
T Consensus 21 C~~C~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 21 CHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp BTTTCCCS-CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CcCCCCcC-CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45565431 12233444468899999999854432 346898864
No 125
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.58 E-value=0.76 Score=27.82 Aligned_cols=43 Identities=30% Similarity=0.652 Sum_probs=26.6
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhC-----CCCCCccCc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS-----HSTCPLCRT 46 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 46 (129)
|.||...- ....+.....|...||..|+.+-|.. .-.||.|..
T Consensus 29 C~vC~~~~-~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 29 CRVCGGKH-EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CSSSCCCC-CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CcCcCCcC-CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 56666432 22334444468899999999854432 346888853
No 126
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=69.09 E-value=3.6 Score=24.33 Aligned_cols=45 Identities=18% Similarity=0.445 Sum_probs=29.9
Q ss_pred ccccccccc-cCCCcceEeCCCCChhhHHhHHHHH--hCCCCCCccCc
Q 033041 2 DCAVCLSEF-EENESGRVLPGCNHSFHIGCIDMWF--HSHSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~-~~~~~~~~lp~C~H~Fh~~Ci~~wl--~~~~~CP~Cr~ 46 (129)
.|.||...- ...+.+.....|.-.||..|+..-. .....||.|..
T Consensus 18 ~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 588998753 2333455555799999999997432 12347888864
No 127
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=68.71 E-value=2 Score=28.73 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=30.3
Q ss_pred cccccccccc-CCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCcc
Q 033041 2 DCAVCLSEFE-ENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~-~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 47 (129)
.|.+|...|. ..........|.|.+|..|-..-... ...|-+|+..
T Consensus 57 ~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 57 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred cccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 6999999984 32233555569999999996432111 2268888763
No 128
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.12 E-value=0.33 Score=30.40 Aligned_cols=45 Identities=27% Similarity=0.516 Sum_probs=30.2
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhC----CCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS----HSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 47 (129)
.|.||...-. ...+.....|...||..|+.+=|.. ...||.|...
T Consensus 18 ~C~vC~~~~~-~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 18 ICQVCSRGDE-DDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCSSSCCSGG-GGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCccCCCcCC-CCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4888887532 2234555569999999999754432 3469999653
No 129
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=68.11 E-value=0.24 Score=29.18 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=23.5
Q ss_pred cccccccCCCcceEeC--CCCChhhHHhHHHHH---h-----CCCCCCccCc
Q 033041 5 VCLSEFEENESGRVLP--GCNHSFHIGCIDMWF---H-----SHSTCPLCRT 46 (129)
Q Consensus 5 IC~~~~~~~~~~~~lp--~C~H~Fh~~Ci~~wl---~-----~~~~CP~Cr~ 46 (129)
||......+ ..+..- .|..+||..|+.--- . ....||.||.
T Consensus 14 ~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 14 ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 675543333 222222 388899999983211 1 1457999974
No 130
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=65.67 E-value=3.6 Score=24.23 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=20.8
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHH
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDM 33 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 33 (129)
.|.+|...|..-..--..-.||.+||..|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 57888888764321122234999999999753
No 131
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.56 E-value=3 Score=23.83 Aligned_cols=39 Identities=21% Similarity=0.513 Sum_probs=26.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|+.|...+...+.+... -+..||..|+ .|-.|..++..
T Consensus 7 ~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCC
Confidence 488888887754333333 5677887764 68888877643
No 132
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=65.31 E-value=3.4 Score=25.06 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=21.7
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHH
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMW 34 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 34 (129)
.|.+|...|..-..--..-.||++||..|....
T Consensus 23 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 23 ACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp BCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 588888887643221222349999999997654
No 133
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=64.78 E-value=3.2 Score=25.04 Aligned_cols=32 Identities=25% Similarity=0.513 Sum_probs=20.4
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHH
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDM 33 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 33 (129)
.|.+|...|..-..--..-.||.+||..|...
T Consensus 21 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 21 HCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 47788887764322122234999999988754
No 134
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=64.74 E-value=1.3 Score=28.52 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=17.4
Q ss_pred CCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 21 GCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 21 ~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
+||+.|. .-+.....||.|+......
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCBCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCccCC
Confidence 5999991 1123345799999877654
No 135
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=64.31 E-value=0.95 Score=36.59 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=28.8
Q ss_pred cccccccCCCcceEeCCCCChhhHHhHHHHHh-----CCCCCCccCccc
Q 033041 5 VCLSEFEENESGRVLPGCNHSFHIGCIDMWFH-----SHSTCPLCRTPV 48 (129)
Q Consensus 5 IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~~ 48 (129)
||..........+....|.-+||..|+.---. ....||.|+...
T Consensus 41 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 41 VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 78776543434444556999999999953211 245899997643
No 136
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=63.71 E-value=1.5 Score=34.14 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=0.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHh-------CCCCCCccCccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH-------SHSTCPLCRTPV 48 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-------~~~~CP~Cr~~~ 48 (129)
.|.+|...|..-..--..-.||++||..|...++. ...+|-.|...+
T Consensus 377 ~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 377 MCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ------------------------------------------------------
T ss_pred cCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 48888887753321112224999999999876541 134677775543
No 137
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.48 E-value=3.3 Score=23.70 Aligned_cols=38 Identities=26% Similarity=0.792 Sum_probs=25.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|..|...+...+..+ .. -+..||..|+ .|-.|...+.
T Consensus 7 ~C~~C~~~I~~~~~~~-~a-~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGV-VA-LDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCSSSCSCCCSSSCCE-EC-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCccCCCccCCCceEE-EE-CCCeEcccCC--------cccccCCcCC
Confidence 4788888776533222 23 5677888774 6888888774
No 138
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=62.93 E-value=3.4 Score=25.44 Aligned_cols=49 Identities=20% Similarity=0.444 Sum_probs=31.2
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHh-------CCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFH-------SHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-------~~~~CP~Cr~~~~~ 50 (129)
.|.+|...|..-..--..-.||.+||..|....+. ...+|-.|...+..
T Consensus 11 ~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66 (88)
T ss_dssp BCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHH
T ss_pred CCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHh
Confidence 58899888864322122234999999999765331 12468888666544
No 139
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=62.56 E-value=1.6 Score=31.90 Aligned_cols=43 Identities=30% Similarity=0.683 Sum_probs=24.7
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhC-----CCCCCccCc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHS-----HSTCPLCRT 46 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 46 (129)
|.+|...- .+..+.....|...||..|+.+=|.. .-.||.|..
T Consensus 177 C~vC~~~~-~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 177 CHLCGGRQ-DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp CSSSCCCC-C--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CcCCCCCC-CCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 66665532 12234444569999999999855432 346999964
No 140
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=62.41 E-value=1.8 Score=22.12 Aligned_cols=12 Identities=17% Similarity=0.617 Sum_probs=7.3
Q ss_pred ccccccccccCC
Q 033041 2 DCAVCLSEFEEN 13 (129)
Q Consensus 2 ~C~IC~~~~~~~ 13 (129)
.||||+..+...
T Consensus 7 iCP~C~~~l~s~ 18 (34)
T 3mjh_B 7 ICPQCMKSLGSA 18 (34)
T ss_dssp ECTTTCCEESSH
T ss_pred CCcHHHHHcCCH
Confidence 477777666543
No 141
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.07 E-value=3.3 Score=24.32 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=24.9
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|..|...+... .+.. -+..||..|+ .|-.|+..|.
T Consensus 17 ~C~~C~~~I~~~---~~~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 17 MCDKCGTGIVGV---FVKL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCSSSCCCCCSS---CEEC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred ccccCCCCccCc---EEEE-CcceeCcCcC--------eeCCCCCCCC
Confidence 478888877642 3333 6778888775 6888887764
No 142
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.78 E-value=3.2 Score=29.60 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=21.2
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHH
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMW 34 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 34 (129)
.|.+|...|..-..--..-.||++||..|....
T Consensus 163 ~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 163 VCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred ccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 588888887543221223349999999886543
No 143
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=60.90 E-value=7.8 Score=25.71 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=25.8
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHH------h-----CCCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWF------H-----SHSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl------~-----~~~~CP~Cr~ 46 (129)
.|.||.+. ..+.....|-..||..||..-+ . ....|++|.-
T Consensus 59 ~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 59 QCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred cCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 36666543 1223334588999999998652 1 1347999954
No 144
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.85 E-value=4 Score=24.72 Aligned_cols=31 Identities=26% Similarity=0.604 Sum_probs=18.9
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHH
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCID 32 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~ 32 (129)
.|.+|...|..-..--..-.||.+||..|..
T Consensus 16 ~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 16 NCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred cCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 4778888775332111222499999988854
No 145
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.40 E-value=3.8 Score=23.70 Aligned_cols=39 Identities=21% Similarity=0.424 Sum_probs=25.3
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|+.|...+...+.+... -+..||..|+ .|-.|..++..
T Consensus 13 ~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 13 TCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp BCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 477888877644333333 5667787664 68888877654
No 146
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=60.33 E-value=4.8 Score=27.46 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=28.9
Q ss_pred ccccccccccCC-CcceEeCCCCChhhHHhHHHHHhC--CCCCCccCc
Q 033041 2 DCAVCLSEFEEN-ESGRVLPGCNHSFHIGCIDMWFHS--HSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~-~~~~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~ 46 (129)
.|++|...|.-- ........|.|.+|..|- .|+.. ...|-+|+.
T Consensus 70 ~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 70 HCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp BCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred cchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 699999986422 123455569999999997 24332 235888865
No 147
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.30 E-value=3 Score=23.82 Aligned_cols=39 Identities=18% Similarity=0.516 Sum_probs=25.6
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|..|...+...+. .+.. -+..||..|+ .|-.|..++..
T Consensus 7 ~C~~C~~~I~~~~~-~~~a-~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 7 GCSACGETVMPGSR-KLEY-GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp BCSSSCCBCCSSSC-EECS-TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCccCCCccccCcc-EEEE-CccccCcccC--------eECCCCCcCCC
Confidence 47888887765322 2333 6778888774 68888877643
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.25 E-value=3.7 Score=29.56 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=22.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHH
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMW 34 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 34 (129)
.|.+|...|..-..--..-.||++||..|...+
T Consensus 166 ~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 588888887643222233359999999997644
No 149
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.73 E-value=4.2 Score=23.25 Aligned_cols=38 Identities=18% Similarity=0.466 Sum_probs=25.9
Q ss_pred ccccccccccC--CCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEE--NESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~--~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|+.|...+.. .+.+ +.. -+..||..|+ .|-.|...|.
T Consensus 7 ~C~~C~~~I~~~~~~~~-~~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKY-ISF-EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SBTTTTBCCCCSSSCSC-EEC-SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCcCCCccccCCCCcce-EEE-CCcccCcccC--------EeccCCCcCC
Confidence 48888888764 2222 333 6778888774 7888988775
No 150
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.56 E-value=0.65 Score=26.76 Aligned_cols=35 Identities=20% Similarity=0.582 Sum_probs=21.0
Q ss_pred ccccccccccCCCcceEe--CC--CCChhhHHhHHHHHh
Q 033041 2 DCAVCLSEFEENESGRVL--PG--CNHSFHIGCIDMWFH 36 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~l--p~--C~H~Fh~~Ci~~wl~ 36 (129)
.||-|...++..+....+ .. |++.||..|+..|..
T Consensus 8 ~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 8 ECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 477777776654332222 23 677777777777653
No 151
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=59.22 E-value=1.7 Score=27.16 Aligned_cols=42 Identities=19% Similarity=0.394 Sum_probs=24.0
Q ss_pred ccccccccccCCCcceEeCCCC---ChhhHHhHHHHH--hCCCCCCc-cCc
Q 033041 2 DCAVCLSEFEENESGRVLPGCN---HSFHIGCIDMWF--HSHSTCPL-CRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~---H~Fh~~Ci~~wl--~~~~~CP~-Cr~ 46 (129)
.| ||..... + ..+...+|. .+||..|+.--. .....||. |+.
T Consensus 28 yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 28 YC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHH
T ss_pred EE-EeCCCCC-C-CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcc
Confidence 46 7876432 2 223333444 799999985110 12457999 864
No 152
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.13 E-value=4.2 Score=23.87 Aligned_cols=39 Identities=21% Similarity=0.543 Sum_probs=23.3
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|+.|...+...+.+ +.. -+..||..|+ .|-.|+.++..
T Consensus 17 ~C~~C~~~I~~~~~~-~~a-~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 17 KCKGCFKAIVAGDQN-VEY-KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp BCSSSCCBCCSSSCE-EEC-SSCEEETTTC--------CCSSSCCCCTT
T ss_pred cCccCCcccccCceE-EEE-CccccccccC--------chhhCCCccCC
Confidence 366676666543332 222 5667777664 68888877643
No 153
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.60 E-value=3.3 Score=25.02 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=24.2
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|+.|...+... .+.. -+..||..|+ .|-.|+..|..
T Consensus 27 ~C~~C~~~I~~~---~v~a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 27 MCAHCNQVIRGP---FLVA-LGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp BBSSSCCBCCSC---EEEE-TTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCccCCCEecce---EEEE-CCccccccCC--------ccCCCCCCCCC
Confidence 477888777422 2333 6777887764 78888887753
No 154
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=57.63 E-value=3.9 Score=26.09 Aligned_cols=12 Identities=25% Similarity=1.016 Sum_probs=10.6
Q ss_pred hhhHHhHHHHHh
Q 033041 25 SFHIGCIDMWFH 36 (129)
Q Consensus 25 ~Fh~~Ci~~wl~ 36 (129)
-||..||.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 155
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=57.51 E-value=3.9 Score=26.03 Aligned_cols=12 Identities=25% Similarity=0.880 Sum_probs=10.6
Q ss_pred hhhHHhHHHHHh
Q 033041 25 SFHIGCIDMWFH 36 (129)
Q Consensus 25 ~Fh~~Ci~~wl~ 36 (129)
-||..||.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 156
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=57.01 E-value=21 Score=22.43 Aligned_cols=26 Identities=23% Similarity=0.522 Sum_probs=17.7
Q ss_pred CCCChhhHHhHH------HHHhC-----CCCCCccCc
Q 033041 21 GCNHSFHIGCID------MWFHS-----HSTCPLCRT 46 (129)
Q Consensus 21 ~C~H~Fh~~Ci~------~wl~~-----~~~CP~Cr~ 46 (129)
.|+.+||..|+. ..+.. ...||.|..
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 499999999962 12222 367999954
No 157
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=56.34 E-value=4.7 Score=24.21 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=24.7
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|..|...+... .+.. -+..||..|+ .|-.|...|..
T Consensus 27 ~C~~C~~~I~~~---~~~a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 27 LCDKCGSGIVGA---VVKA-RDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp BCTTTCCBCCSC---CEES-SSCEECTTTC--------CCSSSCCCTTT
T ss_pred CcccCCCEeccc---EEEE-CCceECccCC--------EecCCCCCCCC
Confidence 477888777642 2333 6678888774 68888877653
No 158
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.92 E-value=5.4 Score=22.57 Aligned_cols=36 Identities=22% Similarity=0.615 Sum_probs=25.1
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|..|...+... .+.. -+..||..|+ .|-.|+.++.
T Consensus 7 ~C~~C~~~I~~~---~~~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 7 GCVQCKKPITTG---GVTY-REQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp BCSSSCCBCCSS---EEES-SSSEEETTTS--------BCSSSCCBCT
T ss_pred CCcccCCeeccc---eEEE-CccccCCCCC--------ccCCCCCcCC
Confidence 478888877643 2333 6778888774 6888988774
No 159
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.80 E-value=5.4 Score=23.13 Aligned_cols=38 Identities=16% Similarity=0.470 Sum_probs=25.6
Q ss_pred ccccccccccC--CCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEE--NESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~--~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|+.|...+.. .... +.. -+..||..|+ .|-.|...|.
T Consensus 7 ~C~~C~~~I~~~g~~~~-~~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 7 GCVACSKPISGLTGAKF-ICF-QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCTTTCCCCCTTTTCCE-EEE-TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCccCCCcccCCCCcee-EEE-CCcccCcccC--------ChhhCCCcCC
Confidence 47888887764 2222 333 6778888875 6888887764
No 160
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=54.99 E-value=3.9 Score=26.24 Aligned_cols=37 Identities=22% Similarity=0.573 Sum_probs=22.2
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPV 48 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 48 (129)
.|+.|...+...+.+... -+..||..|+ .|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF--------~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLECF--------KCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTTC--------BCTTTCCBC
T ss_pred cccCCCCeecCCceEEEE--CCcccccccC--------ccccCCCCC
Confidence 488888877654333222 4667777764 466665555
No 161
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=54.28 E-value=4.9 Score=22.69 Aligned_cols=39 Identities=21% Similarity=0.424 Sum_probs=26.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|+.|...+...+.+... -+..||..|+ .|-.|...+..
T Consensus 13 ~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 13 TCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp BCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred cchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 478888877655433332 5667887775 68888887754
No 162
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=53.58 E-value=5.1 Score=22.59 Aligned_cols=9 Identities=22% Similarity=0.881 Sum_probs=5.1
Q ss_pred ccccccccc
Q 033041 2 DCAVCLSEF 10 (129)
Q Consensus 2 ~C~IC~~~~ 10 (129)
.|++|...+
T Consensus 12 ~CP~c~~~L 20 (56)
T 2kpi_A 12 ACPACHAPL 20 (56)
T ss_dssp CCSSSCSCE
T ss_pred eCCCCCCcc
Confidence 466666554
No 163
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.38 E-value=4.3 Score=23.55 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=25.8
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|+.|...+...+.+ .. -+..||..|+ .|-.|+.+|..
T Consensus 11 ~C~~C~~~I~~~~~v--~a-~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 11 KCPKCDKTVYFAEKV--SS-LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp BCTTTCCBCCTTTEE--EE-TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCcCCCCEeECCeEE--EE-CCeEeeCCCC--------CCCCCCCccCC
Confidence 488888887654332 23 5677887764 68889887753
No 164
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=52.64 E-value=5.3 Score=22.38 Aligned_cols=36 Identities=22% Similarity=0.540 Sum_probs=24.7
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|+.|...+... .+.. -+..||..|+ .|-.|..++.
T Consensus 7 ~C~~C~~~I~~~---~~~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 7 ICGACRRPIEGR---VVNA-MGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp EETTTTEECCSC---EECC-TTSBEETTTC--------BCTTTCCBCS
T ss_pred CCcccCCEecce---EEEE-CccccccCcC--------EECCCCCCCC
Confidence 478888877622 2333 6778887764 7888988775
No 165
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=52.23 E-value=0.92 Score=27.47 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=13.2
Q ss_pred CCCChhhHHhHHHHH
Q 033041 21 GCNHSFHIGCIDMWF 35 (129)
Q Consensus 21 ~C~H~Fh~~Ci~~wl 35 (129)
.|++.||..|...|-
T Consensus 55 ~C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 55 GCGFAFCRECKEAYH 69 (80)
T ss_dssp CCSCCEETTTTEECC
T ss_pred CCCCeeccccCcccc
Confidence 599999999998883
No 166
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=51.64 E-value=4.2 Score=25.81 Aligned_cols=41 Identities=20% Similarity=0.672 Sum_probs=22.8
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 51 (129)
.||+|..++.... ++.+|..|-.. +.....||-|..++...
T Consensus 34 ~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 34 HCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQVL 74 (101)
T ss_dssp BCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCEEE
T ss_pred cCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHHHH
Confidence 5888887764321 22234444322 23344689998887643
No 167
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=51.29 E-value=14 Score=21.31 Aligned_cols=35 Identities=20% Similarity=0.509 Sum_probs=26.7
Q ss_pred CccccccccccCCCcceEeCCCCChhhHH-hHHHHH
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIG-CIDMWF 35 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~-Ci~~wl 35 (129)
+.|.-|...+..+.........-|.||.. ||..+-
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs 56 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS 56 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHC
T ss_pred cChhhccchhhcCceeeeecCchhheechHHHcccC
Confidence 36888999988887666666688999854 887753
No 168
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.97 E-value=5.9 Score=22.92 Aligned_cols=36 Identities=17% Similarity=0.440 Sum_probs=24.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|+-|...+... .+.. -+..||..|+ .|-.|..++.
T Consensus 7 ~C~~C~~~I~~~---~v~a-~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGR---VLEA-GEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSC---CBCC-SSCCBCTTTS--------CCSSSCCCCC
T ss_pred CcccCCCEecCe---eEEe-CCCCCCCCcC--------EeCCCCCCCC
Confidence 477788777542 2223 6778888774 6888887765
No 169
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=50.92 E-value=11 Score=23.98 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=26.3
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
+.|..|...|.......... =|..||..|....+.....|..|..+|.
T Consensus 30 F~C~~C~~~L~~~~~~~~~~-~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYK-LGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEE-TTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred cccCcCCCccccCCCeEEEE-CCEEeecCchhhhCCCccChhhcCCccC
Confidence 35666666664211111222 4566777777664433337888887764
No 170
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.11 E-value=4.9 Score=22.81 Aligned_cols=37 Identities=24% Similarity=0.526 Sum_probs=24.4
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|..|...+... .+.. -+..||..|+ .|-.|+.+|..
T Consensus 7 ~C~~C~~~I~~~---~~~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 7 GCHQCGEFIIGR---VIKA-MNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp BCSSSCCBCCSC---CEEE-TTEEECTTTS--------BCSSSCCBCSS
T ss_pred cCccCCCEecce---EEEE-CcccccccCC--------EeCCCCCcCCC
Confidence 478888877632 2222 5677887774 68888877653
No 171
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=50.08 E-value=6.5 Score=25.18 Aligned_cols=41 Identities=17% Similarity=0.475 Sum_probs=24.5
Q ss_pred ccccccccccCCCcceEeC--CCCChhhHHhHHHHHhC----CCCCCccCccc
Q 033041 2 DCAVCLSEFEENESGRVLP--GCNHSFHIGCIDMWFHS----HSTCPLCRTPV 48 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp--~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 48 (129)
.|.+|.+. + .+.... .|...||..|+. |.. ...||.|.-.+
T Consensus 17 ~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 17 YCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 47777732 2 223332 377899999997 433 33688765443
No 172
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.71 E-value=5.9 Score=23.42 Aligned_cols=37 Identities=24% Similarity=0.653 Sum_probs=24.3
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|+.|-..+...+.+. . -+..||..|+ .|-.|+..|.
T Consensus 17 ~C~~C~~~I~~~~~v~--a-~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 17 HCAGCKEEIKHGQSLL--A-LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CCTTTCCCCSSSCCEE--E-TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCcCcCCeeCCCeEEE--E-CCcccccccC--------CcCcCCCCcC
Confidence 4778888776543322 2 5667887764 7888887764
No 173
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.33 E-value=5.3 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.584 Sum_probs=24.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|..|...+... . +.. -+..||..|+ .|-.|..++.
T Consensus 7 ~C~~C~~~I~~~-~--~~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 7 GCVKCNKAITSG-G--ITY-QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCSSSCCCCCTT-C--EEE-TTEEECTTTT--------BCTTTCCBCT
T ss_pred CCcccCCEeCcc-e--EEE-CccccccCcC--------EECCCCCCCC
Confidence 477888877532 2 233 5677887764 6888888775
No 174
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.17 E-value=7.1 Score=23.10 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=25.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|+.|...+...+.+. . -+..||..|+ .|-.|...|..
T Consensus 17 ~C~~C~~~I~~~e~v~--a-~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 17 LCALCGEHLYVLERLC--V-NGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp BCSSSCCBCCTTTBCC--B-TTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCcccCCCcccceEEE--E-CCCeeCCCcC--------EEcCCCCCcCC
Confidence 4788888775443332 2 5667888774 68888877654
No 175
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=48.69 E-value=1.9 Score=24.82 Aligned_cols=40 Identities=23% Similarity=0.524 Sum_probs=22.8
Q ss_pred cccccccCCCcceEeCC--CC-ChhhHHhHHHHH--hCCCCCCccCc
Q 033041 5 VCLSEFEENESGRVLPG--CN-HSFHIGCIDMWF--HSHSTCPLCRT 46 (129)
Q Consensus 5 IC~~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl--~~~~~CP~Cr~ 46 (129)
||..... + ..+...+ |. .+||..|+.--- .....||.|+.
T Consensus 15 ~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 15 LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp TTTEECC-S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred ECCCCCC-C-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 7766422 2 2233334 54 899999996211 12447999854
No 176
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.80 E-value=12 Score=23.85 Aligned_cols=47 Identities=9% Similarity=0.024 Sum_probs=26.7
Q ss_pred ccccccccccC-CCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEE-NESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|..|...|.. +... ... =+..||..|....+.....|-.|..+|..
T Consensus 34 ~C~~C~~~L~~~~~~~-~~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIGTSS-YTK-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSEECC-EEE-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccCCeE-EEE-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 46666665542 1111 122 45567777776655444478888877754
No 177
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.16 E-value=6.8 Score=23.00 Aligned_cols=37 Identities=19% Similarity=0.478 Sum_probs=23.3
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|+.|...+... . +.. -+..||..|+ .|-.|..+|..
T Consensus 17 ~C~~C~~~I~~~-~--v~a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 17 ICQKCHAIIDEQ-P--LIF-KNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp BCTTTCCBCCSC-C--CCC-SSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCccCCCEecce-E--EEE-CcceeCCCCC--------EeCCCCCccCC
Confidence 477777776622 1 222 5667777663 78888887753
No 178
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=47.04 E-value=4 Score=19.97 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=16.6
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhH
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCI 31 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci 31 (129)
.|+.|-..+...+.+. . -|..||..|+
T Consensus 5 ~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred cCCccCCEEecceeEE--E-CCeEecccCC
Confidence 4778877765543322 2 5677888773
No 179
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=46.58 E-value=1.5 Score=26.84 Aligned_cols=27 Identities=26% Similarity=0.753 Sum_probs=18.6
Q ss_pred eEeCCCCChhhHHhHHHHHhCCC--CCCc
Q 033041 17 RVLPGCNHSFHIGCIDMWFHSHS--TCPL 43 (129)
Q Consensus 17 ~~lp~C~H~Fh~~Ci~~wl~~~~--~CP~ 43 (129)
+..+.|++.||..|-..|-..|. +|..
T Consensus 44 v~C~~C~~~FC~~C~~~w~~~H~~~sC~~ 72 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQWEEQHRGRSCED 72 (86)
T ss_dssp EECTTTCCEECSSSCSBCCTTTTTSCHHH
T ss_pred eEeCCCCCccccccCCchhhcCCCCChHH
Confidence 45556999999999888844333 4543
No 180
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=46.24 E-value=1.5 Score=28.16 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=19.9
Q ss_pred ceEeCCCCChhhHHhHHHHHhC--------CCCCCccCc
Q 033041 16 GRVLPGCNHSFHIGCIDMWFHS--------HSTCPLCRT 46 (129)
Q Consensus 16 ~~~lp~C~H~Fh~~Ci~~wl~~--------~~~CP~Cr~ 46 (129)
+.....|..+||..|+...... ...||.|+.
T Consensus 75 m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 75 LMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 4444569999999998643211 235998863
No 181
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=46.07 E-value=3.5 Score=32.97 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=29.1
Q ss_pred cccccccCCCcceEeCCCCChhhHHhHHHHH-----hCCCCCCccCcccc
Q 033041 5 VCLSEFEENESGRVLPGCNHSFHIGCIDMWF-----HSHSTCPLCRTPVE 49 (129)
Q Consensus 5 IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~~~~ 49 (129)
||..........+....|.-+||..|+.--- .....||.|+....
T Consensus 9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 7877654333444445699999999994211 13468999976543
No 182
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.01 E-value=8.6 Score=22.32 Aligned_cols=35 Identities=29% Similarity=0.740 Sum_probs=21.0
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
|+.|...+... .+.. -+..||..|+ .|-.|..+|.
T Consensus 18 C~~C~~~I~~~---~v~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 18 CARCSKTLTQG---GVTY-RDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CTTTCCCCCSC---CEES-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCCCEecCc---EEEE-CCchhhhhhC--------CcccCCCcCC
Confidence 55666555432 2333 5667777664 6888887774
No 183
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=45.33 E-value=4.5 Score=23.45 Aligned_cols=37 Identities=24% Similarity=0.561 Sum_probs=22.3
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|+.|...+...+. +.. -+..||..|+ .|-.|+.++.
T Consensus 2 ~C~~C~~~I~~~~~--v~a-~~~~~H~~CF--------~C~~C~~~L~ 38 (76)
T 1iml_A 2 KCPKCDKEVYFAER--VTS-LGKDWHRPCL--------KCEKCGKTLT 38 (76)
T ss_dssp BCTTTSSBCCGGGE--EEE-TTEEEETTTC--------BCTTTCCBCC
T ss_pred cCCCCCCEEECceE--EEE-CCccccCCCC--------CccccCccCC
Confidence 47777777654432 222 4667777664 5777776664
No 184
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.68 E-value=8.8 Score=22.43 Aligned_cols=37 Identities=24% Similarity=0.649 Sum_probs=20.5
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
|..|...+...+.+ +.. -+..||..|+ .|-.|..+|.
T Consensus 18 C~~C~~~I~~~~~~-~~a-~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 18 CAECQQLIGHDSRE-LFY-EDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp CTTTCCBCCSSCCB-CCC-SSCCCBTTTS--------BCTTTCCBCS
T ss_pred CccCCCccccCcEE-EEe-CCccccccCC--------eecCCCCccC
Confidence 55666655522222 111 4566776664 6888877764
No 185
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.59 E-value=7.5 Score=22.68 Aligned_cols=35 Identities=20% Similarity=0.545 Sum_probs=20.1
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
|+.|...+... .+.. -+..||..|+ .|-.|...|.
T Consensus 18 C~~C~~~I~~~---~~~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 18 CHGCSLLMTGP---FMVA-GEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp CTTTCCBCCSC---CBCC-TTCCBCTTSC--------BCTTTCCBCC
T ss_pred CccCCCCcCce---EEEE-CCceeccccC--------CccCCCCccC
Confidence 55666655521 1222 4566666553 6888887774
No 186
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.50 E-value=7.3 Score=22.80 Aligned_cols=36 Identities=28% Similarity=0.677 Sum_probs=21.4
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|+.|...+.. . .+.. -+..||..|+ .|-.|..++.
T Consensus 17 ~C~~C~~~I~~--~-~v~a-~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 17 RCFSCDQFIEG--E-VVSA-LGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp BCTTTCCBCCS--C-CEEE-TTEEECTTTS--------SCSSSCCCCC
T ss_pred cCccccCEecc--c-eEEE-CCceeCccCC--------ccccCCCCCC
Confidence 36666666552 1 2222 5666776664 6888887765
No 187
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=43.42 E-value=9.2 Score=22.00 Aligned_cols=37 Identities=27% Similarity=0.507 Sum_probs=21.7
Q ss_pred cccccccccC---CCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 3 CAVCLSEFEE---NESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 3 C~IC~~~~~~---~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
|+.|...+.. ... .+.. -+..||..|+ .|-.|..++.
T Consensus 18 C~~C~~~I~~~g~~~~-~~~a-~~~~~H~~CF--------~C~~C~~~L~ 57 (77)
T 2egq_A 18 CAGCKNPITGFGKGSS-VVAY-EGQSWHDYCF--------HCKKCSVNLA 57 (77)
T ss_dssp CSSSCCCCCCCSSCCC-EEEE-TTEEEETTTC--------BCSSSCCBCT
T ss_pred CcccCCcccCCCCCce-eEEE-CcceeCcccC--------EehhcCCCCC
Confidence 5666665553 212 2222 4567777663 7888988775
No 188
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=41.76 E-value=6.9 Score=23.07 Aligned_cols=18 Identities=28% Similarity=0.785 Sum_probs=11.7
Q ss_pred HHHhCCCCCCccCccccc
Q 033041 33 MWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 33 ~wl~~~~~CP~Cr~~~~~ 50 (129)
.||..--.||+|+.++..
T Consensus 3 ~~LLeiL~CP~ck~~L~~ 20 (69)
T 2pk7_A 3 TKLLDILACPICKGPLKL 20 (69)
T ss_dssp CCGGGTCCCTTTCCCCEE
T ss_pred hHHHhheeCCCCCCcCeE
Confidence 345555578888877654
No 189
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.38 E-value=1.4 Score=27.03 Aligned_cols=41 Identities=29% Similarity=0.698 Sum_probs=22.0
Q ss_pred CccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 1 MDCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
+.|++|...+........ |..|-.. +.....||-|..++..
T Consensus 3 ~~CP~C~~~l~~~~~~~~--------C~~C~~~-~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAH--------CETCAKD-FSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSSEEE--------CTTTCCE-EEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCCceE--------Ccccccc-CCCcccCcchhhHHHH
Confidence 368999888765433222 2333222 1222368888777643
No 190
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=40.28 E-value=6.6 Score=25.38 Aligned_cols=37 Identities=19% Similarity=0.583 Sum_probs=24.8
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|+.|-..+... . .+.. -+..||..|+ .|-.|+..|.
T Consensus 63 ~C~~C~~~I~~~-~-~v~a-~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 63 RCAGCGGKIADR-F-LLYA-MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp BBSSSSSBCCSS-S-EEEE-TTEEEETTTS--------BCTTTCCBGG
T ss_pred cCcCCCCCcCCc-E-EEEe-CCcEEccccc--------CcCcCCCccc
Confidence 478888776643 1 1222 6677887774 7999988875
No 191
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.50 E-value=8.4 Score=22.49 Aligned_cols=35 Identities=26% Similarity=0.719 Sum_probs=20.4
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
|+.|...+... .+.. -+..||..| +.|-.|..++.
T Consensus 18 C~~C~~~I~~~---~~~a-~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 2dlo_A 18 CATCSQPILDR---ILRA-MGKAYHPGC--------FTCVVCHRGLD 52 (81)
T ss_dssp CTTTCCBCCSC---CEEE-TTEEECTTT--------CBCSSSCCBCT
T ss_pred cccCCCeecce---eEEE-CCccccHHh--------cCcccCCCccC
Confidence 55566555421 2222 456667655 37888987775
No 192
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=38.98 E-value=6.2 Score=23.15 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=14.0
Q ss_pred HHHHhCCCCCCccCcccccc
Q 033041 32 DMWFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 32 ~~wl~~~~~CP~Cr~~~~~~ 51 (129)
+.||..--.||+|+.++...
T Consensus 4 d~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 4 DPQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp CGGGTCCCBCTTTCCBCEEE
T ss_pred CHHHHHHhCCCCCCCcCeEe
Confidence 34566666899999887654
No 193
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=38.61 E-value=5.9 Score=23.19 Aligned_cols=38 Identities=29% Similarity=0.596 Sum_probs=25.0
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|..|...+...+. +.. -+..||..|+ .|-.|..++..
T Consensus 9 ~C~~C~~~I~~~~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~ 46 (81)
T 1a7i_A 9 KCGACGRTVYHAEE--VQC-DGRSFHRCCF--------LCMVCRKNLDS 46 (81)
T ss_dssp BCSSSCCBCSSTTE--EEE-TTEEEESSSE--------ECSSSCCEECS
T ss_pred cCcCcCccccCcee--EEe-CCcccccccC--------ccCCCCCCCCC
Confidence 48888888765542 233 5677887764 68888777643
No 194
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.02 E-value=9.8 Score=22.05 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=19.9
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
|+.|...+... .+.. -+..||..| +.|-.|+.++..
T Consensus 18 C~~C~~~I~~~---~v~a-~~~~~H~~C--------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 18 CGGCNRPVLEN---YLSA-MDTVWHPEC--------FVCGDCFTSFST 53 (80)
T ss_dssp CTTTCCBCCSS---CEEE-TTEEECTTT--------CBCSSSCCBSCS
T ss_pred cccCCCeecce---eEEE-CCCeEecCc--------CChhhCCCCCCC
Confidence 55555554431 1222 455666655 368888887753
No 195
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.70 E-value=2.5 Score=32.16 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=26.9
Q ss_pred ccccccccccCCCcceEe---C-CCCChhhHHhHHHHHhCCCCCCccCcc
Q 033041 2 DCAVCLSEFEENESGRVL---P-GCNHSFHIGCIDMWFHSHSTCPLCRTP 47 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~l---p-~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 47 (129)
.||||-..-... +... . +=.+.+|..|-..|-.....||.|...
T Consensus 184 ~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 184 LCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp SCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 599998764322 0110 0 111456667777887777899999654
No 196
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=36.49 E-value=16 Score=25.03 Aligned_cols=9 Identities=22% Similarity=0.936 Sum_probs=4.4
Q ss_pred CCCccCccc
Q 033041 40 TCPLCRTPV 48 (129)
Q Consensus 40 ~CP~Cr~~~ 48 (129)
.|..|...|
T Consensus 71 ~C~~C~~~I 79 (188)
T 1rut_X 71 ACSACGQSI 79 (188)
T ss_dssp ECTTTCCEE
T ss_pred ccccCCCcc
Confidence 355555444
No 197
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.20 E-value=16 Score=21.77 Aligned_cols=38 Identities=29% Similarity=0.721 Sum_probs=25.6
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCccccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVEL 50 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 50 (129)
.|..|...+...+. +.. -+..||..|+ .|-.|...|..
T Consensus 17 ~C~~C~~~I~~~~~--v~a-~~~~~H~~CF--------~C~~C~~~L~~ 54 (91)
T 2d8y_A 17 TCVECQKTVYPMER--LLA-NQQVFHISCF--------RCSYCNNKLSL 54 (91)
T ss_dssp BCTTTCCBCCTTSE--EEC-SSSEEETTTC--------BCTTTCCBCCT
T ss_pred cCccCCCccCCcee--EEE-CCCEECCCCC--------eeCCCCCCCCC
Confidence 47888887765432 233 6778888774 68888777654
No 198
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=36.15 E-value=14 Score=22.35 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=5.0
Q ss_pred ccccccccc
Q 033041 3 CAVCLSEFE 11 (129)
Q Consensus 3 C~IC~~~~~ 11 (129)
|+.|...+.
T Consensus 8 C~~C~~~I~ 16 (101)
T 2cup_A 8 CVECRKPIG 16 (101)
T ss_dssp CSSSCCBCC
T ss_pred CcccCCccc
Confidence 555555554
No 199
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=35.85 E-value=13 Score=20.74 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=25.5
Q ss_pred ccccccccccCCCcceEeCCCCChhh--HHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFH--IGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh--~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|+.|...+...+..+. . -+..|| ..|+ .|-.|+.++.
T Consensus 4 ~C~~C~~~I~~~~~~v~-a-~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVT-Y-NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp ECTTTSSEECTTSCEEE-E-TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCcCCCCeeccCceEEE-E-CCCccCCCCCCE--------ECCCCCCcCC
Confidence 47888888775323332 2 577888 7774 7888888774
No 200
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=32.99 E-value=19 Score=24.72 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=16.1
Q ss_pred ceEeCCCCChhhHHhHHHHHhCCCCCCccCcc
Q 033041 16 GRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTP 47 (129)
Q Consensus 16 ~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 47 (129)
..+.+.|||++-. ..-..||+|..+
T Consensus 138 ~~~C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 138 VYICPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp EEECTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eeEeCCCCCeeCC-------CCCCCCCCCCCC
Confidence 3456679997641 223489999764
No 201
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=32.27 E-value=15 Score=22.39 Aligned_cols=31 Identities=19% Similarity=0.541 Sum_probs=19.1
Q ss_pred CccccccccccCCCcceE--eCCCCChhhHHhHHH
Q 033041 1 MDCAVCLSEFEENESGRV--LPGCNHSFHIGCIDM 33 (129)
Q Consensus 1 ~~C~IC~~~~~~~~~~~~--lp~C~H~Fh~~Ci~~ 33 (129)
+.|.||...- .+ ..+. .++|.-.||..|-..
T Consensus 18 l~C~iC~~~~-~G-AciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 18 LTCYLCKQKG-VG-ASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCBTTTTBCC-SS-CEEECSCTTTCCEEEHHHHHH
T ss_pred CCCcCCCCCC-Cc-EeEecCCCCCCCcCcHHHHHH
Confidence 5799996531 11 1122 124889999999865
No 202
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=31.57 E-value=16 Score=21.38 Aligned_cols=27 Identities=22% Similarity=0.615 Sum_probs=18.8
Q ss_pred cccccccccCCCcceEeCCC-CChhhHHhHHHH
Q 033041 3 CAVCLSEFEENESGRVLPGC-NHSFHIGCIDMW 34 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C-~H~Fh~~Ci~~w 34 (129)
|.||.++- .++-+ +| +-.||..|....
T Consensus 11 C~ICneDA----tlrC~-gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 11 CCICNEDA----TLRCA-GCDGDLYCARCFREG 38 (67)
T ss_dssp CTTTCSCC----CEEET-TTTSEEECSSHHHHH
T ss_pred eEEeCCCC----eEEec-CCCCceehHHHHHHH
Confidence 78998872 23344 48 679999997664
No 203
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=30.88 E-value=28 Score=23.84 Aligned_cols=40 Identities=20% Similarity=0.606 Sum_probs=25.1
Q ss_pred ccccccccccCCCcceEeC--CCCChhhHHhHHHHHhC----------CCCCCccC
Q 033041 2 DCAVCLSEFEENESGRVLP--GCNHSFHIGCIDMWFHS----------HSTCPLCR 45 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp--~C~H~Fh~~Ci~~wl~~----------~~~CP~Cr 45 (129)
.|.||-+. ..+.... .|...||..||..++.. ...|=+|.
T Consensus 81 yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~ 132 (159)
T 3a1b_A 81 YCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132 (159)
T ss_dssp SCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred eeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence 35566542 2333333 48899999999988632 23687774
No 204
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=30.53 E-value=29 Score=27.15 Aligned_cols=41 Identities=24% Similarity=0.615 Sum_probs=26.3
Q ss_pred ccccccccccCCCcceEeC--CCCChhhHHhHHHHHhC----------CCCCCccCc
Q 033041 2 DCAVCLSEFEENESGRVLP--GCNHSFHIGCIDMWFHS----------HSTCPLCRT 46 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp--~C~H~Fh~~Ci~~wl~~----------~~~CP~Cr~ 46 (129)
.|-||-+. ..+.... .|...||..||..++.. ...|=+|.-
T Consensus 95 yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 95 YCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 35555543 2334443 58899999999998722 346888854
No 205
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=29.55 E-value=40 Score=21.12 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=23.2
Q ss_pred ccccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 2 DCAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 2 ~C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
.|..|...+... . .... =|..||..|.... ....|..|..+|.
T Consensus 32 ~C~~C~~~L~~~-~-f~~~-~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 32 CCFDCDSILAGE-I-YVMV-NDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp BCTTTCCBCTTS-E-EEEE-TTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CcCCCCCCCCcC-E-EEeE-CCEEechHHhCcC--cCccCcccCCcCC
Confidence 455555555422 1 1111 4556666666442 3457888887765
No 206
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=29.54 E-value=29 Score=29.38 Aligned_cols=35 Identities=29% Similarity=0.672 Sum_probs=24.7
Q ss_pred ccccccccccCC-------CcceEeCCCCChhhHHhHHHHHhC
Q 033041 2 DCAVCLSEFEEN-------ESGRVLPGCNHSFHIGCIDMWFHS 37 (129)
Q Consensus 2 ~C~IC~~~~~~~-------~~~~~lp~C~H~Fh~~Ci~~wl~~ 37 (129)
+||+|+-..... ..+..+. |+-.||..|++.+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~s-~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 15 TCPVCFASASERCAKNGYTSRWYHLS-CGEHFCNECFDHYYRS 56 (776)
T ss_dssp SSCCBSCCCSTTCCTTSCBSCEEEEE-TTEEEEHHHHHHHHST
T ss_pred cccHHHHHHHHHHHhCCCCcceeEec-cccchhHHHHHHHhcc
Confidence 588888765432 1355677 9989999999866543
No 207
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.07 E-value=21 Score=21.46 Aligned_cols=30 Identities=27% Similarity=0.584 Sum_probs=18.1
Q ss_pred ccccccccccC-CCcceEeCCCCChhhHHhH
Q 033041 2 DCAVCLSEFEE-NESGRVLPGCNHSFHIGCI 31 (129)
Q Consensus 2 ~C~IC~~~~~~-~~~~~~lp~C~H~Fh~~Ci 31 (129)
.|+.|.+.|.- .......+.|.|..|..|-
T Consensus 27 ~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 27 TCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp BCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred chhhhCccccccccCCCcCcccChhhccccc
Confidence 47778777642 1122344558888777774
No 208
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=29.00 E-value=12 Score=18.11 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=7.2
Q ss_pred CCCCccCccc
Q 033041 39 STCPLCRTPV 48 (129)
Q Consensus 39 ~~CP~Cr~~~ 48 (129)
..||+|+...
T Consensus 4 ~~CpvCk~q~ 13 (28)
T 2jvx_A 4 FCCPKCQYQA 13 (28)
T ss_dssp EECTTSSCEE
T ss_pred ccCccccccC
Confidence 4699998644
No 209
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.92 E-value=6.5 Score=23.09 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=11.4
Q ss_pred HHhCCCCCCccCcccccc
Q 033041 34 WFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 34 wl~~~~~CP~Cr~~~~~~ 51 (129)
||..--.||+|+.++...
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEYH 21 (68)
T ss_dssp SSSCCCBCSSSCCBCEEE
T ss_pred HHhhheECCCCCCcCeEe
Confidence 344445788888877643
No 210
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.49 E-value=25 Score=21.94 Aligned_cols=36 Identities=19% Similarity=0.603 Sum_probs=17.7
Q ss_pred cccccccccCCCcceEeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 3 CAVCLSEFEENESGRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 3 C~IC~~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
|+-|...+.... .+.. -+..||..|+ .|-.|..+|.
T Consensus 6 C~~C~~~I~~~~--~~~a-~~~~wH~~CF--------~C~~C~~~L~ 41 (114)
T 1j2o_A 6 CGGCQQNIGDRY--FLKA-IDQYWHEDCL--------SCDLCGCRLG 41 (114)
T ss_dssp BSSSCSCBCSSE--EEEC-SSSEECTTTC--------CCSSSCSCCC
T ss_pred CcCCCCeeCCcE--EEEE-CchhHHHhcC--------cccccCCchh
Confidence 666666554321 1112 4555665543 5666655553
No 211
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.30 E-value=19 Score=24.18 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=16.9
Q ss_pred EeCCCCChhhHHhHHHHHhCCCCCCccCcccc
Q 033041 18 VLPGCNHSFHIGCIDMWFHSHSTCPLCRTPVE 49 (129)
Q Consensus 18 ~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 49 (129)
....|||.|-.. .....||.|..++.
T Consensus 134 ~C~~Cg~~~~~~------~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 134 VCIGCGRKFSTL------PPGGVCPDCGSKVK 159 (165)
T ss_dssp EESSSCCEESSC------CGGGBCTTTCCBEE
T ss_pred ECCCCCCcccCC------CCCCcCCCCCCcce
Confidence 444699988532 12347999988753
No 212
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.94 E-value=7 Score=23.09 Aligned_cols=18 Identities=22% Similarity=0.625 Sum_probs=11.1
Q ss_pred HHhCCCCCCccCcccccc
Q 033041 34 WFHSHSTCPLCRTPVELV 51 (129)
Q Consensus 34 wl~~~~~CP~Cr~~~~~~ 51 (129)
||..--.||+|+.++...
T Consensus 4 ~LL~iL~CP~ck~~L~~~ 21 (70)
T 2js4_A 4 RLLDILVCPVCKGRLEFQ 21 (70)
T ss_dssp CCCCCCBCTTTCCBEEEE
T ss_pred HHhhheECCCCCCcCEEe
Confidence 333445688888876543
No 213
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=24.90 E-value=6.5 Score=23.09 Aligned_cols=14 Identities=36% Similarity=0.916 Sum_probs=9.3
Q ss_pred CCCCCccCcccccc
Q 033041 38 HSTCPLCRTPVELV 51 (129)
Q Consensus 38 ~~~CP~Cr~~~~~~ 51 (129)
--.||+|+.++...
T Consensus 8 iL~CP~ck~~L~~~ 21 (68)
T 2hf1_A 8 ILVCPLCKGPLVFD 21 (68)
T ss_dssp ECBCTTTCCBCEEE
T ss_pred heECCCCCCcCeEe
Confidence 34688888776543
No 214
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=24.36 E-value=30 Score=24.31 Aligned_cols=25 Identities=24% Similarity=0.552 Sum_probs=15.7
Q ss_pred ceEeCCCCChhhHHhHHHHHhCCCCCCccCcc
Q 033041 16 GRVLPGCNHSFHIGCIDMWFHSHSTCPLCRTP 47 (129)
Q Consensus 16 ~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 47 (129)
..+.+.|||++-. ..-..||+|..+
T Consensus 171 ~~~C~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES-------SCCSBCTTTCCB
T ss_pred EEEECCCCCEEcC-------cCCCCCCCCCCC
Confidence 3445569998542 123489999764
No 215
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.46 E-value=26 Score=24.34 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=15.8
Q ss_pred eEeCCCCChhhHHhHHHHHhCCCCCCccCcc
Q 033041 17 RVLPGCNHSFHIGCIDMWFHSHSTCPLCRTP 47 (129)
Q Consensus 17 ~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 47 (129)
.+.+.|||++-.. .-...||+|..+
T Consensus 156 ~~C~~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 156 WRCRNCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp EEETTTCCEEEEE------ECCSBCTTTCCB
T ss_pred EEECCCCCEeeCC------CCCCCCCCCcCC
Confidence 4455699986421 123389999875
No 216
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=23.05 E-value=31 Score=17.08 Aligned_cols=13 Identities=38% Similarity=0.856 Sum_probs=9.6
Q ss_pred ccccccccccCCC
Q 033041 2 DCAVCLSEFEENE 14 (129)
Q Consensus 2 ~C~IC~~~~~~~~ 14 (129)
+|++|+..-+.++
T Consensus 11 ecalcysitdpge 23 (36)
T 2jyp_A 11 ECALCYSITDPGE 23 (36)
T ss_dssp CCSSSTTTTTTTC
T ss_pred hheeEEeecCcch
Confidence 6899988766653
No 217
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=22.84 E-value=6.8 Score=18.14 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=7.8
Q ss_pred hhhHHhHHHHHh
Q 033041 25 SFHIGCIDMWFH 36 (129)
Q Consensus 25 ~Fh~~Ci~~wl~ 36 (129)
.||..|-++||.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 467777777763
No 218
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.02 E-value=25 Score=21.87 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=9.5
Q ss_pred CCCCCccCcccc
Q 033041 38 HSTCPLCRTPVE 49 (129)
Q Consensus 38 ~~~CP~Cr~~~~ 49 (129)
...||+|..++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 457999988775
No 219
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=20.82 E-value=57 Score=17.20 Aligned_cols=9 Identities=22% Similarity=0.726 Sum_probs=5.0
Q ss_pred CCCccCccc
Q 033041 40 TCPLCRTPV 48 (129)
Q Consensus 40 ~CP~Cr~~~ 48 (129)
.|+.|...+
T Consensus 26 vC~~CG~v~ 34 (50)
T 1pft_A 26 VCAKCGYVI 34 (50)
T ss_dssp EESSSCCBC
T ss_pred ECcccCCcc
Confidence 466665444
Done!