Query 033042
Match_columns 128
No_of_seqs 122 out of 922
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 100.0 5.4E-38 1.2E-42 234.7 9.3 124 1-125 93-216 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.9 3.3E-28 7.2E-33 151.2 4.1 68 54-122 1-68 (68)
3 PF02885 Glycos_trans_3N: Glyc 35.6 96 0.0021 18.3 5.5 53 17-71 4-59 (66)
4 PHA03029 hypothetical protein; 32.5 67 0.0015 20.3 2.9 28 99-126 15-42 (92)
5 PRK04307 putative disulfide ox 31.2 57 0.0012 24.5 3.0 56 64-122 159-214 (218)
6 PF04835 Pox_A9: A9 protein co 30.6 1.2E+02 0.0025 17.8 4.3 39 13-51 7-45 (54)
7 cd02577 PSTD1 PSTD1: Pseudouri 30.1 72 0.0015 25.3 3.5 27 93-119 228-255 (319)
8 PF03698 UPF0180: Uncharacteri 28.5 48 0.001 21.0 1.8 17 58-74 63-79 (80)
9 PF04854 DUF624: Protein of un 27.5 1.4E+02 0.0031 17.8 4.0 37 42-79 21-61 (77)
10 PF13943 WPP: WPP domain 24.7 21 0.00044 23.6 -0.4 9 81-89 1-9 (99)
11 TIGR01641 phageSPP1_gp7 phage 24.1 92 0.002 20.0 2.7 21 53-74 6-26 (108)
12 PF10960 DUF2762: Protein of u 23.2 1.9E+02 0.0042 17.7 3.9 25 31-55 4-28 (71)
13 COG5393 Predicted membrane pro 20.3 1.4E+02 0.0031 20.4 3.0 26 103-128 93-123 (131)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=100.00 E-value=5.4e-38 Score=234.69 Aligned_cols=124 Identities=31% Similarity=0.628 Sum_probs=120.2
Q ss_pred CeeeeeeecccccHHHHHHhhhcCCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCChhhHHHHHHhhChHHHHh
Q 033042 1 MLFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFT 80 (128)
Q Consensus 1 a~~G~~~~gp~~h~wy~~L~~~~~~~~~~~~~~Kv~~Dq~v~~P~~~~~f~~~~~~~l~g~s~~~~~~~~~~~~~~~~~~ 80 (128)
+++|+++.||.+|+||+.||+++|.++..++++|++.||++++|+.+..|+..++ ++||++.++..++++++++|++++
T Consensus 93 ~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~kvl~dql~~~P~~~~~ff~~~~-~legk~~~~~~~~~~~~~~p~l~~ 171 (222)
T KOG1944|consen 93 GIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVKKVLLDQLVFAPLFIVVFFLLMG-LLEGKTNEEAKAKLKRKFWPTLKA 171 (222)
T ss_pred HhhhhheeccchhHHHHHHHHHccCccHHHHHHHHHHhhhhhchHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cceechHHHhhhheeecCCchhhHhHHHHHHHHHHHHHhhhhHhh
Q 033042 81 SWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAESAAI 125 (128)
Q Consensus 81 ~~~~Wp~~~~inf~~vP~~~Rvl~~n~v~~~W~~yLS~~~~~~~~ 125 (128)
+|++||++|++||++||+++|++++|+++++||+|||+++++.++
T Consensus 172 ~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W~~~Ls~~~~~~~~ 216 (222)
T KOG1944|consen 172 NWMVWPLVQFINFRLVPLQYRVLFVNIVSLVWNTYLSYKNASLVE 216 (222)
T ss_pred hheecchhheeeeEEccccceehhhhhHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999887743
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.94 E-value=3.3e-28 Score=151.19 Aligned_cols=68 Identities=35% Similarity=0.852 Sum_probs=66.1
Q ss_pred HHHHhcCCChhhHHHHHHhhChHHHHhcceechHHHhhhheeecCCchhhHhHHHHHHHHHHHHHhhhh
Q 033042 54 FGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAES 122 (128)
Q Consensus 54 ~~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inf~~vP~~~Rvl~~n~v~~~W~~yLS~~~~~ 122 (128)
|+ ++||+|++++.+++|++++++++++|++|||+|++||.+||+++|++++|+|+++||+|||+++||
T Consensus 1 Mg-~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MG-LLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CC-cccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 57 899999999999999999999999999999999999999999999999999999999999999886
No 3
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=35.56 E-value=96 Score=18.26 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=28.3
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhcCCChhhHHHHHH
Q 033042 17 KFLDAIFKGRDNKSVAKKVLLEQLI---FSPWINFLFMTYFGLVVEGKPWGSVMKKVR 71 (128)
Q Consensus 17 ~~L~~~~~~~~~~~~~~Kv~~Dq~v---~~P~~~~~f~~~~~~~l~g~s~~~~~~~~~ 71 (128)
..|++...++++..-=.+-+++..+ .+|.-++.|++.+. .+|.+.+|+..-.+
T Consensus 4 ~~l~~l~~g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~--~kget~~Eiag~~~ 59 (66)
T PF02885_consen 4 EILKKLRDGEDLSREEAKAAFDAILDGEVSDAQIAAFLMALR--MKGETPEEIAGFAK 59 (66)
T ss_dssp HHHHHHHTT----HHHHHHHHHHHHTTSS-HHHHHHHHHHHH--HH---HHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhCcCHHHHHHHHH
Confidence 3556666654443333344444443 47888999998875 78999888766443
No 4
>PHA03029 hypothetical protein; Provisional
Probab=32.50 E-value=67 Score=20.25 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=21.8
Q ss_pred CchhhHhHHHHHHHHHHHHHhhhhHhhh
Q 033042 99 QFRELFFSLVASCWAIFINLKAESAAIK 126 (128)
Q Consensus 99 ~~Rvl~~n~v~~~W~~yLS~~~~~~~~~ 126 (128)
-|-++..+.+|+.|.-.||--+-|+++.
T Consensus 15 iyiilila~igiiwg~llsi~k~raai~ 42 (92)
T PHA03029 15 IYIILILAIIGIIWGFLLSINKIRAAID 42 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999876666553
No 5
>PRK04307 putative disulfide oxidoreductase; Provisional
Probab=31.24 E-value=57 Score=24.55 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=43.0
Q ss_pred hhHHHHHHhhChHHHHhcceechHHHhhhheeecCCchhhHhHHHHHHHHHHHHHhhhh
Q 033042 64 GSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYAPQQFRELFFSLVASCWAIFINLKAES 122 (128)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~Wp~~~~inf~~vP~~~Rvl~~n~v~~~W~~yLS~~~~~ 122 (128)
+...+++++.+.+.+..+|...|.-+++| +|.-.-+.|....-+.=...+|+..++
T Consensus 159 ~~~l~~~q~~~~~~y~~gwyl~p~w~f~~---Maq~~~~~f~~~~~~l~~~~~~~~~~~ 214 (218)
T PRK04307 159 GVTLSSVQQWFVDLYSEGWYLLPPWHFMN---MAQACLLAFGLCLVLLVVMSGAWALKL 214 (218)
T ss_pred cchhHHHHHHHhhhccccccccccHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888899999999999999999965 677777777776666666666665444
No 6
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=30.64 E-value=1.2e+02 Score=17.78 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=29.6
Q ss_pred cHHHHHHhhhcCCCChHHHHHHHHHHHHhhhHHHHHHHH
Q 033042 13 HFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFM 51 (128)
Q Consensus 13 h~wy~~L~~~~~~~~~~~~~~Kv~~Dq~v~~P~~~~~f~ 51 (128)
|....+-|..+.+++...++.|+++...++--+-+++++
T Consensus 7 H~~myfce~k~R~NsF~fViik~vismimylilGi~L~y 45 (54)
T PF04835_consen 7 HCFMYFCENKLRPNSFWFVIIKSVISMIMYLILGIALIY 45 (54)
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555567788888899999999999998887555444443
No 7
>cd02577 PSTD1 PSTD1: Pseudouridine synthase, a subgroup of the TruD family. This group consists of several hypothetical archeal pseudouridine synthases assigned to the TruD family of psuedouridine synthases. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). The TruD family is comprised of proteins related to Escherichia coli TruD.
Probab=30.05 E-value=72 Score=25.30 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=22.6
Q ss_pred heeecCCchhhHhHH-HHHHHHHHHHHh
Q 033042 93 FQYAPQQFRELFFSL-VASCWAIFINLK 119 (128)
Q Consensus 93 f~~vP~~~Rvl~~n~-v~~~W~~yLS~~ 119 (128)
+.-+|...|.+|++. -|.+||-.+|..
T Consensus 228 l~~iP~~lr~myvhAYQSylfN~~lS~R 255 (319)
T cd02577 228 FLALPKNLRRMFVHAYQSYLFNEILSER 255 (319)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336999999999885 589999999974
No 8
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=28.50 E-value=48 Score=20.96 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=14.7
Q ss_pred hcCCChhhHHHHHHhhC
Q 033042 58 VEGKPWGSVMKKVRKDY 74 (128)
Q Consensus 58 l~g~s~~~~~~~~~~~~ 74 (128)
.+|+|.+|+.+++++++
T Consensus 63 A~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 63 ASGLTAEEIVQEVEERL 79 (80)
T ss_pred cCCCCHHHHHHHHHHhh
Confidence 37999999999999875
No 9
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=27.52 E-value=1.4e+02 Score=17.80 Aligned_cols=37 Identities=8% Similarity=0.202 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHhcCC-C---hhhHHHHHHhhChHHHH
Q 033042 42 FSPWINFLFMTYFGLVVEGK-P---WGSVMKKVRKDYPAVQF 79 (128)
Q Consensus 42 ~~P~~~~~f~~~~~~~l~g~-s---~~~~~~~~~~~~~~~~~ 79 (128)
..|-..+.+.+... ..+++ + +++-.+..|+++.....
T Consensus 21 igPA~~Al~~~~~~-~~~~~~~~~~~~~f~~~fk~nf~~~~~ 61 (77)
T PF04854_consen 21 IGPATAALYYVVRK-WVRDEEDSYLFRDFWRAFKQNFKQSLL 61 (77)
T ss_pred HHHHHHHHHHHHHH-HHcCCccChHHHHHHHHHHHHHHHHHH
Confidence 45666677777777 55665 2 33444555555544443
No 10
>PF13943 WPP: WPP domain
Probab=24.67 E-value=21 Score=23.64 Aligned_cols=9 Identities=44% Similarity=1.173 Sum_probs=6.6
Q ss_pred cceechHHH
Q 033042 81 SWKVWPTVT 89 (128)
Q Consensus 81 ~~~~Wp~~~ 89 (128)
+.++|||.|
T Consensus 1 s~~lWPpsq 9 (99)
T PF13943_consen 1 SFKLWPPSQ 9 (99)
T ss_pred CCCcCCCCc
Confidence 457888875
No 11
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=24.06 E-value=92 Score=19.99 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=17.7
Q ss_pred HHHHHhcCCChhhHHHHHHhhC
Q 033042 53 YFGLVVEGKPWGSVMKKVRKDY 74 (128)
Q Consensus 53 ~~~~~l~g~s~~~~~~~~~~~~ 74 (128)
..+ +.+|++.+++.+++++.+
T Consensus 6 ~~g-i~~G~~~~~iak~i~~~~ 26 (108)
T TIGR01641 6 ADG-VQRGLGPNELAKRLRKEL 26 (108)
T ss_pred HHH-HHcCCCHHHHHHHHHHHH
Confidence 456 889999999999998876
No 12
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=23.17 E-value=1.9e+02 Score=17.75 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Q 033042 31 VAKKVLLEQLIFSPWINFLFMTYFG 55 (128)
Q Consensus 31 ~~~Kv~~Dq~v~~P~~~~~f~~~~~ 55 (128)
-+.|++..|-+|+-++..+++..+.
T Consensus 4 ei~k~~~sQG~fA~LFv~Ll~yvlK 28 (71)
T PF10960_consen 4 EIIKLALSQGIFAVLFVWLLFYVLK 28 (71)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 4679999999999988776665554
No 13
>COG5393 Predicted membrane protein [Function unknown]
Probab=20.33 E-value=1.4e+02 Score=20.45 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=19.4
Q ss_pred hHhHHHHHHHHHHHHHh-----hhhHhhhhC
Q 033042 103 LFFSLVASCWAIFINLK-----AESAAIKKD 128 (128)
Q Consensus 103 l~~n~v~~~W~~yLS~~-----~~~~~~~~~ 128 (128)
+....++++|..+-|.. +.++|+.||
T Consensus 93 ~vl~~i~ciW~lrks~~s~l~~aT~~ELanD 123 (131)
T COG5393 93 LVLALIGCIWTLRKSRKSTLLRATRHELAND 123 (131)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHhhh
Confidence 45678899999999953 466777665
Done!