Query 033042
Match_columns 128
No_of_seqs 122 out of 922
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m93_A Serine proteinase inhib 20.8 15 0.0005 20.4 -0.6 30 38-67 14-43 (55)
2 2qho_B E3 ubiquitin-protein li 18.4 76 0.0026 17.5 2.0 20 57-76 19-38 (53)
3 1szw_A TRNA pseudouridine synt 17.7 54 0.0019 25.5 1.8 27 93-119 205-232 (379)
4 1fs1_B SKP1, cyclin A/CDK2-ass 14.6 2E+02 0.0069 18.5 3.8 13 57-69 120-132 (141)
5 1z2z_A Probable tRNA pseudouri 12.1 88 0.003 24.6 1.6 27 93-119 258-285 (446)
6 3r88_A Anthranilate phosphorib 11.3 3.5E+02 0.012 20.7 4.8 53 13-68 24-80 (377)
7 2hl7_A Cytochrome C-type bioge 10.3 1.2E+02 0.0041 18.4 1.5 20 57-76 56-75 (84)
8 2kw0_A CCMH protein; oxidoredu 9.8 1.3E+02 0.0044 18.6 1.5 21 57-77 53-73 (90)
9 2kii_A Putative uncharacterize 9.3 1.3E+02 0.0045 20.4 1.5 70 9-79 3-78 (181)
10 1wv8_A TT1413, hypothetical pr 9.3 97 0.0033 18.4 0.7 25 57-81 28-52 (73)
No 1
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=20.80 E-value=15 Score=20.39 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=16.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHhcCCChhhHH
Q 033042 38 EQLIFSPWINFLFMTYFGLVVEGKPWGSVM 67 (128)
Q Consensus 38 Dq~v~~P~~~~~f~~~~~~~l~g~s~~~~~ 67 (128)
+.++++|+.+..-+....+-.+|+|.+|+.
T Consensus 14 ~Ni~~SP~Si~~aLaml~~GA~g~T~~ql~ 43 (55)
T 1m93_A 14 ENVFISPPSISSVLTILYYGANGSTAEQLS 43 (55)
T ss_dssp SCEEECHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHhhccchHHHHHH
Confidence 367899997655544433123555544443
No 2
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=18.45 E-value=76 Score=17.48 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=15.9
Q ss_pred HhcCCChhhHHHHHHhhChH
Q 033042 57 VVEGKPWGSVMKKVRKDYPA 76 (128)
Q Consensus 57 ~l~g~s~~~~~~~~~~~~~~ 76 (128)
+++|+|.+-++.++++.=.+
T Consensus 19 VLqgksR~vIirELqrTnLd 38 (53)
T 2qho_B 19 VLQGKSRSVIIRELQRTNLD 38 (53)
T ss_dssp HSTTCCHHHHHHHHHHTTTC
T ss_pred HhcCCcHHHHHHHHHHhCcc
Confidence 88999988888888875443
No 3
>1szw_A TRNA pseudouridine synthase D; novel fold, RNA modification, TRUD, structural proteomics in europe, spine, structural genomics; 2.00A {Escherichia coli} SCOP: d.265.1.4 PDB: 1si7_A 1sb7_A
Probab=17.71 E-value=54 Score=25.50 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=19.0
Q ss_pred heeecCCchhhHhHH-HHHHHHHHHHHh
Q 033042 93 FQYAPQQFRELFFSL-VASCWAIFINLK 119 (128)
Q Consensus 93 f~~vP~~~Rvl~~n~-v~~~W~~yLS~~ 119 (128)
+.-+|...|-++++. -|.+||-.+|..
T Consensus 205 ~~~ipr~lr~~yv~AyQS~lfN~~lS~R 232 (379)
T 1szw_A 205 TPVRDRNKRSFWLSAARSALFNQIVAER 232 (379)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999885 489999999963
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=14.55 E-value=2e+02 Score=18.50 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=10.6
Q ss_pred HhcCCChhhHHHH
Q 033042 57 VVEGKPWGSVMKK 69 (128)
Q Consensus 57 ~l~g~s~~~~~~~ 69 (128)
.++|+|.+|+++.
T Consensus 120 ~ikgkt~eeiR~~ 132 (141)
T 1fs1_B 120 MIKGKTPEEIRKT 132 (141)
T ss_dssp HHTTCCHHHHHHH
T ss_pred HHcCCCHHHHHHH
Confidence 6789999888774
No 5
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=12.10 E-value=88 Score=24.63 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=22.6
Q ss_pred heeecCCchhhHhHH-HHHHHHHHHHHh
Q 033042 93 FQYAPQQFRELFFSL-VASCWAIFINLK 119 (128)
Q Consensus 93 f~~vP~~~Rvl~~n~-v~~~W~~yLS~~ 119 (128)
+.-+|...|.+|++. -|.+||..+|..
T Consensus 258 ~~~ipr~lr~myv~AyQS~lfN~~lS~R 285 (446)
T 1z2z_A 258 FRVLPQNLYRMFVHGYQSYIYNIILCRR 285 (446)
T ss_dssp GTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999988885 599999999963
No 6
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=11.27 E-value=3.5e+02 Score=20.71 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=34.9
Q ss_pred cHHHHHHhhhcCCCCh----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCChhhHHH
Q 033042 13 HFLNKFLDAIFKGRDN----KSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMK 68 (128)
Q Consensus 13 h~wy~~L~~~~~~~~~----~~~~~Kv~~Dq~v~~P~~~~~f~~~~~~~l~g~s~~~~~~ 68 (128)
..|=+.|+++..++++ ..-+.+.++|.- .+|.-+..|++.+. .+|+|.+|+..
T Consensus 24 ~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~-~~~~QiaAfL~Alr--~kGet~eEi~g 80 (377)
T 3r88_A 24 PSWPQILGRLTDNRDLARGQAAWAMDQIMTGN-ARPAQIAAFAVAMT--MKAPTADEVGE 80 (377)
T ss_dssp CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTC-SCHHHHHHHHHHHH--HHCCCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHH--HhCcCHHHHHH
Confidence 3577888888877543 222223333332 37888999997774 79999887754
No 7
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=10.27 E-value=1.2e+02 Score=18.37 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.7
Q ss_pred HhcCCChhhHHHHHHhhChH
Q 033042 57 VVEGKPWGSVMKKVRKDYPA 76 (128)
Q Consensus 57 ~l~g~s~~~~~~~~~~~~~~ 76 (128)
+.+|+|-+++++.+.++|.+
T Consensus 56 l~~G~sd~eI~~~~v~RYG~ 75 (84)
T 2hl7_A 56 LQQGKSDGEIVDYMVARYGD 75 (84)
T ss_dssp HHHTCCHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHhcCC
Confidence 77899999999988887754
No 8
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=9.79 E-value=1.3e+02 Score=18.56 Aligned_cols=21 Identities=19% Similarity=0.280 Sum_probs=17.3
Q ss_pred HhcCCChhhHHHHHHhhChHH
Q 033042 57 VVEGKPWGSVMKKVRKDYPAV 77 (128)
Q Consensus 57 ~l~g~s~~~~~~~~~~~~~~~ 77 (128)
+.+|+|-+++++-+.++|.+.
T Consensus 53 l~~G~Sd~eI~~~mv~RYGdf 73 (90)
T 2kw0_A 53 MQEGKSKKEIVDYMVARYGNF 73 (90)
T ss_dssp HHHTCCHHHHHHHHHHHHTTT
T ss_pred HHcCCCHHHHHHHHHHhcCCe
Confidence 778999999999988887543
No 9
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=9.34 E-value=1.3e+02 Score=20.40 Aligned_cols=70 Identities=10% Similarity=-0.092 Sum_probs=41.9
Q ss_pred cccccHHHHHHhhhcCCCChHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHhcCCChhhHHHHHHhhChHHHH
Q 033042 9 VPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPW------INFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQF 79 (128)
Q Consensus 9 gp~~h~wy~~L~~~~~~~~~~~~~~Kv~~Dq~v~~P~------~~~~f~~~~~~~l~g~s~~~~~~~~~~~~~~~~~ 79 (128)
|-+.+.|-.+++..++...|..+..+.-++.-++.|. .+.-.....+ -.-|.|.+++.+..-+.+.....
T Consensus 3 G~I~~~~~~~v~~~~G~e~w~~i~~~a~~~~~~f~~~~~Y~D~~~~~lv~a~s-~~~g~~~~~ll~~fG~~~~~~~~ 78 (181)
T 2kii_A 3 GIIFNVLEDMVVAQCGMSVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVA-QRLNMPIQDVVKAFGQFLFNGLA 78 (181)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHCCSSCCCCSSCCTTTTHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHcCHHHHHHHHHHhCCCCCceeeccccCHHHHHHHHHHHH-HHHCcCHHHHHHHHHHHHHHHHH
Confidence 4455667777777776666777777776655555554 2233333344 45578877777766555544443
No 10
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=9.26 E-value=97 Score=18.36 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=19.7
Q ss_pred HhcCCChhhHHHHHHhhChHHHHhc
Q 033042 57 VVEGKPWGSVMKKVRKDYPAVQFTS 81 (128)
Q Consensus 57 ~l~g~s~~~~~~~~~~~~~~~~~~~ 81 (128)
..||+|.++..+++|.-....+..+
T Consensus 28 vtea~Tleel~~~i~~~i~~lLe~n 52 (73)
T 1wv8_A 28 ATEAATLEELLAKLAVMVPELLEEN 52 (73)
T ss_dssp CCEESSHHHHHHHHHHHHHHHHHHS
T ss_pred eeecCCHHHHHHHHHHHHHHHHHhc
Confidence 5688999999999998777666544
Done!