BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033043
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U5T|A Chain A, Structure Of The Escrt-Ii Endosomal Trafficking Complex
 pdb|1W7P|A Chain A, The Crystal Structure Of Endosomal Complex Escrt-Ii
           (Vps22VPS25VPS36)
          Length = 233

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 78  SPSSNYTADQRKVLQMMSLDARKSVSQYVEKHGWEAV 114
           S  +  T+DQ K+L++ S+    S+S      GWEAV
Sbjct: 160 SVPNELTSDQTKILEICSILGYSSISLLKANLGWEAV 196


>pdb|3QKW|A Chain A, Structure Of Streptococcus Parasangunini Gtf3
           Glycosyltransferase
 pdb|3QKW|B Chain B, Structure Of Streptococcus Parasangunini Gtf3
           Glycosyltransferase
 pdb|3QKW|C Chain C, Structure Of Streptococcus Parasangunini Gtf3
           Glycosyltransferase
 pdb|3QKW|D Chain D, Structure Of Streptococcus Parasangunini Gtf3
           Glycosyltransferase
          Length = 332

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 7   IAKRLDALIG---YASLRAIESPS----TLDDQQWLTLPFWAYMKLLFCMWLVLPMFHGA 59
           ++KRLD ++    +  +   ++P+      D++    L  +    +LF   +V  MF G 
Sbjct: 53  LSKRLDGIVAGLRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFSGN 112

Query: 60  AYIYEKHIRRYVKIGGYVSPSSNYTADQRKVLQMMSLDARKSVSQYVEKHGWEA 113
            Y+ ++ I  Y K    V+PS       R       ++  K+V Q +  H  +A
Sbjct: 113 FYLMDRTIAYYNKADVVVAPSQKMIDKLRD----FGMNVSKTVVQGMWDHPTQA 162


>pdb|3RHZ|A Chain A, Structure And Functional Analysis Of A New Subfamily Of
           Glycosyltransferases Required For Glycosylation Of
           Serine-Rich Streptococcal Adhesions
 pdb|3RHZ|B Chain B, Structure And Functional Analysis Of A New Subfamily Of
           Glycosyltransferases Required For Glycosylation Of
           Serine-Rich Streptococcal Adhesions
          Length = 339

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 7   IAKRLDALIG---YASLRAIESPS----TLDDQQWLTLPFWAYMKLLFCMWLVLPMFHGA 59
           ++KRLD ++    +  +   ++P+      D++    L  +    +LF   +V  MF G 
Sbjct: 61  LSKRLDGIVAGLRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFSGN 120

Query: 60  AYIYEKHIRRYVKIGGYVSPSSNYTADQRKVLQMMSLDARKSVSQYVEKHGWEA 113
            Y+ ++ I  Y K    V+PS       R       ++  K+V Q +  H  +A
Sbjct: 121 FYLMDRTIAYYNKADVVVAPSQKMIDKLRD----FGMNVSKTVVQGMWDHPTQA 170


>pdb|3QUM|B Chain B, Crystal Structure Of Human Prostate Specific Antigen (Psa)
           In Fab Sandwich With A High Affinity And A Pca Selective
           Antibody
 pdb|3QUM|D Chain D, Crystal Structure Of Human Prostate Specific Antigen (Psa)
           In Fab Sandwich With A High Affinity And A Pca Selective
           Antibody
          Length = 219

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 75  GYVSPSSNYTADQRKVLQMMSLDARKS 101
           GY++PS+ YT + +K    ++L A KS
Sbjct: 49  GYINPSTGYTENNQKFKDKVTLTADKS 75


>pdb|2I9L|B Chain B, Structure Of Fab 7d11 From A Neutralizing Antibody Against
           The Poxvirus L1 Protein
 pdb|2I9L|D Chain D, Structure Of Fab 7d11 From A Neutralizing Antibody Against
           The Poxvirus L1 Protein
 pdb|2I9L|F Chain F, Structure Of Fab 7d11 From A Neutralizing Antibody Against
           The Poxvirus L1 Protein
 pdb|2I9L|H Chain H, Structure Of Fab 7d11 From A Neutralizing Antibody Against
           The Poxvirus L1 Protein
          Length = 219

 Score = 25.4 bits (54), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 75  GYVSPSSNYTADQRKVLQMMSLDARKSVS 103
           GY++PS+ YT   +K     +L A KS S
Sbjct: 49  GYINPSTGYTEYNQKFKDKATLTADKSSS 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,563,490
Number of Sequences: 62578
Number of extensions: 128497
Number of successful extensions: 365
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 10
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)