Query 033043
Match_columns 128
No_of_seqs 174 out of 524
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:06:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1725 Protein involved in me 99.9 5.2E-26 1.1E-30 176.9 1.3 105 3-114 53-184 (186)
2 PF03134 TB2_DP1_HVA22: TB2/DP 99.8 6.5E-20 1.4E-24 127.1 4.4 68 4-71 1-94 (94)
3 KOG1726 HVA22/DP1 gene product 99.6 2E-15 4.4E-20 120.6 6.0 63 16-78 15-101 (225)
4 COG5052 YOP1 Protein involved 99.5 9E-15 1.9E-19 113.5 3.6 69 3-72 55-149 (186)
5 KOG3269 Predicted membrane pro 59.3 51 0.0011 26.0 6.8 70 16-87 67-161 (180)
6 smart00648 SWAP Suppressor-of- 55.0 15 0.00032 22.5 2.6 24 98-121 3-26 (54)
7 COG4095 Uncharacterized conser 46.8 71 0.0015 22.5 5.2 47 3-53 7-54 (89)
8 PF14975 DUF4512: Domain of un 44.6 15 0.00032 25.8 1.5 13 60-72 12-24 (88)
9 PF01805 Surp: Surp module; I 42.7 48 0.001 20.3 3.6 25 97-121 3-27 (55)
10 PF11626 Rap1_C: TRF2-interact 39.8 1.2E+02 0.0025 20.4 6.4 63 56-121 21-85 (87)
11 PF15190 DUF4583: Domain of un 38.1 86 0.0019 23.4 4.8 48 1-48 7-76 (128)
12 PRK02910 light-independent pro 35.9 1.3E+02 0.0027 26.8 6.3 62 53-114 400-505 (519)
13 PF08621 RPAP1_N: RPAP1-like, 33.9 1.2E+02 0.0026 18.8 4.4 36 91-126 12-48 (49)
14 PF07442 Ponericin: Ponericin; 33.6 82 0.0018 17.7 3.1 24 98-121 5-28 (29)
15 CHL00076 chlB photochlorophyll 33.5 1.3E+02 0.0028 26.8 6.0 62 53-114 412-499 (513)
16 PF09415 CENP-X: CENP-S associ 33.4 35 0.00075 22.7 1.9 33 93-125 19-51 (72)
17 PF10274 ParcG: Parkin co-regu 30.2 2.3E+02 0.0049 22.2 6.3 59 53-117 111-174 (183)
18 PF12390 Se-cys_synth_N: Selen 29.5 1.1E+02 0.0024 17.7 3.5 24 102-125 16-39 (40)
19 PF14213 DUF4325: Domain of un 28.8 96 0.0021 20.0 3.4 52 59-118 3-55 (74)
20 PF01411 tRNA-synt_2c: tRNA sy 28.2 1.5E+02 0.0032 26.8 5.5 72 52-123 290-378 (552)
21 PF05418 Apo-VLDL-II: Apovitel 26.8 22 0.00047 24.5 0.0 16 50-66 11-26 (82)
22 PHA01623 hypothetical protein 25.9 1.2E+02 0.0025 19.1 3.3 29 93-122 19-47 (56)
23 PF03489 SapB_2: Saposin-like 25.5 58 0.0013 17.9 1.7 20 102-121 4-23 (35)
24 TIGR01278 DPOR_BchB light-inde 24.7 2.2E+02 0.0049 25.1 6.0 62 53-114 402-498 (511)
25 KOG2551 Phospholipase/carboxyh 23.5 59 0.0013 26.5 2.0 16 96-111 89-104 (230)
26 smart00315 RGS Regulator of G 23.4 2.2E+02 0.0048 18.6 4.9 15 56-70 47-61 (118)
27 PF04293 SpoVR: SpoVR like pro 21.7 1.1E+02 0.0025 27.0 3.5 34 88-122 126-159 (426)
28 smart00526 H15 Domain in histo 21.3 2.1E+02 0.0045 17.9 3.9 28 98-125 25-55 (66)
29 PF12459 DUF3687: D-Ala-teicho 21.2 53 0.0011 20.0 1.0 27 38-64 14-41 (42)
30 PF08369 PCP_red: Proto-chloro 21.1 1.4E+02 0.003 17.9 2.9 17 96-112 18-34 (45)
31 cd00073 H15 linker histone 1 a 20.3 1.9E+02 0.0041 19.4 3.7 27 99-125 26-55 (88)
No 1
>KOG1725 consensus Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.2e-26 Score=176.93 Aligned_cols=105 Identities=38% Similarity=0.624 Sum_probs=88.0
Q ss_pred hHHHHHHHHhHHHH-----HHHHHHHhCCCcccccceee---------------------ecchHHHHHHHHHHHhcccc
Q 033043 3 VLAVIAKRLDALIG-----YASLRAIESPSTLDDQQWLT---------------------LPFWAYMKLLFCMWLVLPMF 56 (128)
Q Consensus 3 ~lg~~a~~l~~l~g-----YaS~kAies~~~~d~~~WLt---------------------iPfY~~~K~~fl~wL~~P~~ 56 (128)
.+|.++.++||++| |+|++||||++++||+|||+ |||||++|++|++||++|++
T Consensus 53 ~~g~~~~l~cn~ig~~yP~y~Sv~aIes~~k~dD~~wL~YWivys~lslie~~~~~il~~iP~y~~~K~~fl~~l~lP~~ 132 (186)
T KOG1725|consen 53 LFGSGGPLLCNLIGFLYPAYASVKAIESPSKDDDTQWLTYWIVYSILSLVEFFSVAILSWIPFYWYAKLIFLLWLVLPQF 132 (186)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHhccCC
Confidence 46778899999999 99999999999999999999 99999999999999999999
Q ss_pred CcHHHHHHHhhhhhhh-hCCccCCCCCCCHHHHHHHhhcCHHHHHHHHHHHHHhCHHHH
Q 033043 57 HGAAYIYEKHIRRYVK-IGGYVSPSSNYTADQRKVLQMMSLDARKSVSQYVEKHGWEAV 114 (128)
Q Consensus 57 ~GA~~iY~~~i~P~~~-~~~~id~~~~~~~~~k~~~~~~~~~~~~a~~~y~~e~G~eA~ 114 (128)
+||.++|+++|||++. |..++|...+.+ + ..+++...++..+..++++++.
T Consensus 133 ~Ga~~iY~~~vrp~~~~~~~~~~~~~~~~---k----~~~~~i~~~a~~~~n~~~~~~~ 184 (186)
T KOG1725|consen 133 NGAAIIYNHIVRPFFLKHSREIDDIEDAN---K----QIKDDILTAAGEEENKKDADAP 184 (186)
T ss_pred CCceeeechhhhhhhhhhhhhhhhhhhcc---c----ccchhcccccchhhccccCCCC
Confidence 9999999999999996 777777322222 1 2346677778888887777653
No 2
>PF03134 TB2_DP1_HVA22: TB2/DP1, HVA22 family; InterPro: IPR004345 This family includes members from a wide variety of eukaryotes. It includes the TB2/DP1 (deleted in polyposis) protein which in human is deleted in severe forms of familial adenomatous polyposis, an autosomal dominant oncological inherited disease. The family also includes the plant protein of known similarity to TB2/DP1, the HVA22 abscisic acid-induced protein (e.g. Q07764 from SWISSPROT), which is thought to be a regulatory protein.
Probab=99.79 E-value=6.5e-20 Score=127.14 Aligned_cols=68 Identities=50% Similarity=0.941 Sum_probs=63.9
Q ss_pred HHHHHHHHhHHHH-----HHHHHHHhCCCcccccceee---------------------ecchHHHHHHHHHHHhccccC
Q 033043 4 LAVIAKRLDALIG-----YASLRAIESPSTLDDQQWLT---------------------LPFWAYMKLLFCMWLVLPMFH 57 (128)
Q Consensus 4 lg~~a~~l~~l~g-----YaS~kAies~~~~d~~~WLt---------------------iPfY~~~K~~fl~wL~~P~~~ 57 (128)
+|.+++.+|+++| |+|+||+++++++++++||+ +|+|+++|++|++||.+|+++
T Consensus 1 ~~~~~~~l~~~i~~~yP~~~s~kal~~~~~~~~~~wL~YWiv~~~~~~~e~~~~~~l~~iP~y~~~K~~~~~wL~~p~~~ 80 (94)
T PF03134_consen 1 FGFIARLLCNLIGILYPAYKSFKALKSKDKKDLKQWLTYWIVYGLFTLFESFLDFILSWIPFYYEFKLLFLVWLQLPQFQ 80 (94)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHcCCCC
Confidence 4667888888888 99999999999999999999 999999999999999999999
Q ss_pred cHHHHHHHhhhhhh
Q 033043 58 GAAYIYEKHIRRYV 71 (128)
Q Consensus 58 GA~~iY~~~i~P~~ 71 (128)
||.++|+++++|++
T Consensus 81 Ga~~iy~~~i~P~~ 94 (94)
T PF03134_consen 81 GAEYIYDKFIRPFL 94 (94)
T ss_pred cHHHHHHHHccccC
Confidence 99999999999975
No 3
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=99.58 E-value=2e-15 Score=120.62 Aligned_cols=63 Identities=30% Similarity=0.732 Sum_probs=57.8
Q ss_pred HHHHHHHHhC--CCcccccceee---------------------ecchHHHHHHHHHHHhccccCcHHHHHHHhhhhhhh
Q 033043 16 GYASLRAIES--PSTLDDQQWLT---------------------LPFWAYMKLLFCMWLVLPMFHGAAYIYEKHIRRYVK 72 (128)
Q Consensus 16 gYaS~kAies--~~~~d~~~WLt---------------------iPfY~~~K~~fl~wL~~P~~~GA~~iY~~~i~P~~~ 72 (128)
.|+|+||+++ ++..+...|+. ||||+++|++|++||..|.++|+.+||+.|+||++.
T Consensus 15 Ay~tyKavk~~~~~i~el~~W~~YWIv~A~~t~~e~~~d~~lsw~P~Y~e~Kl~fv~wL~~p~t~G~~~vY~~f~~p~ls 94 (225)
T KOG1726|consen 15 AYATYKAVKSNRKDIRELLRWMMYWIVFAALTVFETLTDFLLSWFPFYSEFKLAFVIWLLSPATKGASYVYRKFLRPFLS 94 (225)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccccCccHHHHHHHhhhhhh
Confidence 3999999999 55666777777 999999999999999999999999999999999997
Q ss_pred -hCCccC
Q 033043 73 -IGGYVS 78 (128)
Q Consensus 73 -~~~~id 78 (128)
||+.||
T Consensus 95 ~~E~eid 101 (225)
T KOG1726|consen 95 KHEEEID 101 (225)
T ss_pred hHHHHHH
Confidence 888998
No 4
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=99.51 E-value=9e-15 Score=113.47 Aligned_cols=69 Identities=38% Similarity=0.540 Sum_probs=62.3
Q ss_pred hHHHHHHHHhHHHH-----HHHHHHHhCCCcccccceee---------------------ecchHHHHHHHHHHHhcccc
Q 033043 3 VLAVIAKRLDALIG-----YASLRAIESPSTLDDQQWLT---------------------LPFWAYMKLLFCMWLVLPMF 56 (128)
Q Consensus 3 ~lg~~a~~l~~l~g-----YaS~kAies~~~~d~~~WLt---------------------iPfY~~~K~~fl~wL~~P~~ 56 (128)
++|.+. ++.|++| +-|+.|+++.+..||+|||+ +||||..|.+|++|+..|+|
T Consensus 55 vlG~g~-ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~Y~~~K~vFllw~~~prt 133 (186)
T COG5052 55 VLGFGL-ILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPFYWTLKNVFLLWLLLPRT 133 (186)
T ss_pred hhhHHH-HHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 345544 6666666 89999999999999999999 99999999999999999999
Q ss_pred CcHHHHHHHhhhhhhh
Q 033043 57 HGAAYIYEKHIRRYVK 72 (128)
Q Consensus 57 ~GA~~iY~~~i~P~~~ 72 (128)
+||..||+++|+|+.+
T Consensus 134 ~GA~~IY~~~i~p~~s 149 (186)
T COG5052 134 EGARIIYDDIIAPDVS 149 (186)
T ss_pred CceeeeHHhhcccccc
Confidence 9999999999999996
No 5
>KOG3269 consensus Predicted membrane protein [Function unknown]
Probab=59.30 E-value=51 Score=25.98 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCcccccceee--------------ecchH-----------HHHHHHHHHHhccccCcHHHHHHHhhhhh
Q 033043 16 GYASLRAIESPSTLDDQQWLT--------------LPFWA-----------YMKLLFCMWLVLPMFHGAAYIYEKHIRRY 70 (128)
Q Consensus 16 gYaS~kAies~~~~d~~~WLt--------------iPfY~-----------~~K~~fl~wL~~P~~~GA~~iY~~~i~P~ 70 (128)
.|.++.-+-.|.-+|+-.-|- +|=+- +.-..+.++|+.|.+.| |.---+|.|+
T Consensus 67 ~y~~m~~mAkpkydd~G~Lld~G~Dln~~g~~~sy~~D~iylt~~v~llsiis~kfw~~lLl~P~~a~--yk~~g~i~p~ 144 (180)
T KOG3269|consen 67 AYYFMHSMAKPKYDDDGALLDGGFDLNDEGAICSYVKDAIYLTCFVQLLSIISGKFWASLLLIPIFAG--YKAAGLILPM 144 (180)
T ss_pred HHHHHHHhccCCcCCCCceeecCcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHhhcch
Confidence 377777777776665554443 11111 11445677888898533 3333499999
Q ss_pred hhhCCccCCCCCCCHHH
Q 033043 71 VKIGGYVSPSSNYTADQ 87 (128)
Q Consensus 71 ~~~~~~id~~~~~~~~~ 87 (128)
+++...-+++...++.+
T Consensus 145 ls~g~~~~dn~e~~~kk 161 (180)
T KOG3269|consen 145 LSQGSEQGDNDEKNRKK 161 (180)
T ss_pred hccccccccchhhcchh
Confidence 98555333244444433
No 6
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=55.04 E-value=15 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHH
Q 033043 98 ARKSVSQYVEKHGWEAVERAIKAA 121 (128)
Q Consensus 98 ~~~a~~~y~~e~G~eA~ekli~~a 121 (128)
+...+.+|+.+||++--++++++-
T Consensus 3 iI~~tA~~Va~~G~~fe~~l~~~~ 26 (54)
T smart00648 3 IIDKTAQFVARNGPEFEAKLMERE 26 (54)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhc
Confidence 445678899999998666666554
No 7
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=46.84 E-value=71 Score=22.47 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=35.4
Q ss_pred hHHHHHHHHhHHHH-HHHHHHHhCCCcccccceeeecchHHHHHHHHHHHhc
Q 033043 3 VLAVIAKRLDALIG-YASLRAIESPSTLDDQQWLTLPFWAYMKLLFCMWLVL 53 (128)
Q Consensus 3 ~lg~~a~~l~~l~g-YaS~kAies~~~~d~~~WLtiPfY~~~K~~fl~wL~~ 53 (128)
+.|..|..+.+++- =.-+|.+++++..+- ++|++...-..+++||..
T Consensus 7 viG~ia~ilttf~flPQ~iki~ktK~t~~I----sl~~fii~~ia~~lwliy 54 (89)
T COG4095 7 VIGTIAGILTTFAFLPQLIKIIKTKNTASI----SLPMFIILNIALFLWLIY 54 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccc----cHHHHHHHHHHHHHHHHH
Confidence 45667777777665 367788888776554 389999999999999963
No 8
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=44.62 E-value=15 Score=25.79 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=11.0
Q ss_pred HHHHHHhhhhhhh
Q 033043 60 AYIYEKHIRRYVK 72 (128)
Q Consensus 60 ~~iY~~~i~P~~~ 72 (128)
.+||++||+|++-
T Consensus 12 LwIykkFlqP~i~ 24 (88)
T PF14975_consen 12 LWIYKKFLQPYIY 24 (88)
T ss_pred HHHHHHHHHHHHH
Confidence 4789999999883
No 9
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins []. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 2E5Z_A 2DT7_B 2DT6_A 1UG0_A 1X4P_A 2E60_A 1X4O_A 4DGW_B.
Probab=42.73 E-value=48 Score=20.33 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHH
Q 033043 97 DARKSVSQYVEKHGWEAVERAIKAA 121 (128)
Q Consensus 97 ~~~~a~~~y~~e~G~eA~ekli~~a 121 (128)
++...+.+|+.+||++--+.++++-
T Consensus 3 ~~I~~tA~~Va~~G~~fE~~l~~~~ 27 (55)
T PF01805_consen 3 EIIDKTAEFVAKNGPEFEEKLRERE 27 (55)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhc
Confidence 3455678899999986555555544
No 10
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=39.77 E-value=1.2e+02 Score=20.43 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=36.4
Q ss_pred cCcHHHHHHHhhhhhhhhCCcc--CCCCCCCHHHHHHHhhcCHHHHHHHHHHHHHhCHHHHHHHHHHH
Q 033043 56 FHGAAYIYEKHIRRYVKIGGYV--SPSSNYTADQRKVLQMMSLDARKSVSQYVEKHGWEAVERAIKAA 121 (128)
Q Consensus 56 ~~GA~~iY~~~i~P~~~~~~~i--d~~~~~~~~~k~~~~~~~~~~~~a~~~y~~e~G~eA~ekli~~a 121 (128)
+.|=..+-..+|.-+++.+..+ +....|++.-.+.+...++ ...++.+++||.+.+++-.+.-
T Consensus 21 tSgd~~~a~~~vl~~l~~g~~~P~n~~GiWT~eDD~~L~~~~~---~~~~~L~~khG~~~i~~R~~FL 85 (87)
T PF11626_consen 21 TSGDPELARRFVLNFLQAGKGIPDNMPGIWTPEDDEMLRSGDK---DDIERLIKKHGEERIERRKEFL 85 (87)
T ss_dssp TTTBHHHHHHHHHHCHCHTTSS-TT-TT---HHHHHHHTS--H---HHHHHHHHHH-HHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHcCCH---HHHHHHHHHhCHHHHHHHHHHH
Confidence 5566666666666666533332 2346677776666654333 4467899999999999877653
No 11
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=38.08 E-value=86 Score=23.43 Aligned_cols=48 Identities=25% Similarity=0.519 Sum_probs=28.1
Q ss_pred CchHHHHHHHHhHHHH----------H--HHHHHHhCCCccc--ccceee--------ecchHHHHHHHH
Q 033043 1 MGVLAVIAKRLDALIG----------Y--ASLRAIESPSTLD--DQQWLT--------LPFWAYMKLLFC 48 (128)
Q Consensus 1 mg~lg~~a~~l~~l~g----------Y--aS~kAies~~~~d--~~~WLt--------iPfY~~~K~~fl 48 (128)
||++|++..++..+.. | .+..-|++.+.++ ...|-. +|||-.+-+..+
T Consensus 7 mgWv~v~lyLl~s~~~~yyvFei~~~Yn~laLehiq~~~~~~~~~~sW~~s~~~rL~slPfW~wa~ifll 76 (128)
T PF15190_consen 7 MGWVGVSLYLLASAAAVYYVFEIHDTYNRLALEHIQRAPRPPPSQLSWSQSLKARLLSLPFWMWALIFLL 76 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhccCCCcccccchHHHHhhcccCcHHHHHHHHHH
Confidence 7899988888777765 2 3444555433222 233433 999965544443
No 12
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=35.90 E-value=1.3e+02 Score=26.76 Aligned_cols=62 Identities=16% Similarity=0.353 Sum_probs=43.7
Q ss_pred ccc--cCcHHHHHHHhhhhhhh-hCCc------------------------------cC-------CCCCCCHHHHHHHh
Q 033043 53 LPM--FHGAAYIYEKHIRRYVK-IGGY------------------------------VS-------PSSNYTADQRKVLQ 92 (128)
Q Consensus 53 ~P~--~~GA~~iY~~~i~P~~~-~~~~------------------------------id-------~~~~~~~~~k~~~~ 92 (128)
.|. +.|+..+.+.+..|++. .|+. +. ....|++..+..+.
T Consensus 400 ~p~~Gy~Ga~~l~d~i~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ea~~~l~ 479 (519)
T PRK02910 400 SPQMGFEGANVIFDTWYHPLMLGLEEHLLDMFGDDFEFYDGAAAAAAAASAGHDTKEVATKAAAADSELVWTPEAEAELK 479 (519)
T ss_pred CCeeehhHHHHHHHHHHHHHHhccHHHHHHhcccccccccccccccccccccccccccccCCCCCCCCCCCCHHHHHHHh
Confidence 477 78999999999999884 2222 10 12347777666665
Q ss_pred hcC----HHHHHHHHHHHHHhCHHHH
Q 033043 93 MMS----LDARKSVSQYVEKHGWEAV 114 (128)
Q Consensus 93 ~~~----~~~~~a~~~y~~e~G~eA~ 114 (128)
.++ +.++..+|+|.+++|-+-.
T Consensus 480 ~~P~f~r~~~r~~~e~~a~~~g~~~i 505 (519)
T PRK02910 480 KIPFFVRGKVRRNTEKFARERGLPEI 505 (519)
T ss_pred hCChhhHHHHHHHHHHHHHHcCCCee
Confidence 544 6678889999999997643
No 13
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=33.88 E-value=1.2e+02 Score=18.80 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=27.3
Q ss_pred HhhcCH-HHHHHHHHHHHHhCHHHHHHHHHHHHHhhh
Q 033043 91 LQMMSL-DARKSVSQYVEKHGWEAVERAIKAAEKETK 126 (128)
Q Consensus 91 ~~~~~~-~~~~a~~~y~~e~G~eA~ekli~~a~~~~k 126 (128)
+..|++ +...+=++.+..-+|..++.|.+++.+..+
T Consensus 12 L~~MS~eEI~~er~eL~~~LdP~li~~L~~R~~~~~~ 48 (49)
T PF08621_consen 12 LASMSPEEIEEEREELLESLDPKLIEFLKKRANKKEK 48 (49)
T ss_pred HHhCCHHHHHHHHHHHHHhCCHHHHHHHHHhhhcccc
Confidence 334554 467777778888899999999999877654
No 14
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=33.56 E-value=82 Score=17.66 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHH
Q 033043 98 ARKSVSQYVEKHGWEAVERAIKAA 121 (128)
Q Consensus 98 ~~~a~~~y~~e~G~eA~ekli~~a 121 (128)
-+..+..++++.||.-+..+|++|
T Consensus 5 w~k~~~~wlkkkgpgi~kaal~aa 28 (29)
T PF07442_consen 5 WLKKAGEWLKKKGPGILKAALKAA 28 (29)
T ss_pred HHHHHHHHHHhcCchHHHHHHHhc
Confidence 345567799999999888888765
No 15
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=33.53 E-value=1.3e+02 Score=26.78 Aligned_cols=62 Identities=8% Similarity=0.250 Sum_probs=42.8
Q ss_pred ccc--cCcHHHHHHHhhhhhhh------------hCC-cc-------CCCCCCCHHHHHHHhhcC----HHHHHHHHHHH
Q 033043 53 LPM--FHGAAYIYEKHIRRYVK------------IGG-YV-------SPSSNYTADQRKVLQMMS----LDARKSVSQYV 106 (128)
Q Consensus 53 ~P~--~~GA~~iY~~~i~P~~~------------~~~-~i-------d~~~~~~~~~k~~~~~~~----~~~~~a~~~y~ 106 (128)
.|+ ++|+.++-+.+..++.. |+. ++ .....|++..+..++.++ +.++..+|+|.
T Consensus 412 ~p~~Gy~Ga~~l~~~i~n~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~ea~~~l~~iP~f~r~~~r~~~e~~a 491 (513)
T CHL00076 412 RPFLGYEGTNQIADLVYNSFTLGMEDHLLEIFGGHDTKEIITKSLSTDSDLIWSPESQLELSKIPGFVRGKVKRNTEKFA 491 (513)
T ss_pred CCccchHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCcccccCCccccCCCCCCCHHHHHHHHhCCHHhHHHHHHHHHHHH
Confidence 376 79999999999998811 111 00 012357777777776654 56788899999
Q ss_pred HHhCHHHH
Q 033043 107 EKHGWEAV 114 (128)
Q Consensus 107 ~e~G~eA~ 114 (128)
+++|-+..
T Consensus 492 ~~~g~~~i 499 (513)
T CHL00076 492 RQNGITNI 499 (513)
T ss_pred HHcCCCeE
Confidence 99997743
No 16
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=33.42 E-value=35 Score=22.74 Aligned_cols=33 Identities=39% Similarity=0.372 Sum_probs=26.9
Q ss_pred hcCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhh
Q 033043 93 MMSLDARKSVSQYVEKHGWEAVERAIKAAEKET 125 (128)
Q Consensus 93 ~~~~~~~~a~~~y~~e~G~eA~ekli~~a~~~~ 125 (128)
.+++|++..+.+|++-.-.||+.|+...|..+.
T Consensus 19 kIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~ 51 (72)
T PF09415_consen 19 KISKDALKLSAEYLRIFVREAVARAAEQAEAEG 51 (72)
T ss_dssp EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466788999999999999999999998665543
No 17
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=30.23 E-value=2.3e+02 Score=22.22 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=33.1
Q ss_pred ccccCcHHHHHHHhhhhhhh----hCCccCCCCCCCHHHHHHHhhcCHHHHHHHHHHHHHh-CHHHHHHH
Q 033043 53 LPMFHGAAYIYEKHIRRYVK----IGGYVSPSSNYTADQRKVLQMMSLDARKSVSQYVEKH-GWEAVERA 117 (128)
Q Consensus 53 ~P~~~GA~~iY~~~i~P~~~----~~~~id~~~~~~~~~k~~~~~~~~~~~~a~~~y~~e~-G~eA~ekl 117 (128)
.|..+-|-.=|-+-+-|.++ .+.++-+..++ ...+++. |....+-+-+++| |+|||-++
T Consensus 111 ~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y-~~~~~~~-----dlI~etL~~lE~~GG~dA~~nI 174 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDY-RKRKNLG-----DLIQETLELLERNGGPDAFINI 174 (183)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcccCCCccccc-ccccchh-----HHHHHHHHHHHHhcChhHHHHH
Confidence 67778888888888888775 22222223445 2222332 3334444556666 78887643
No 18
>PF12390 Se-cys_synth_N: Selenocysteine synthase N terminal
Probab=29.52 E-value=1.1e+02 Score=17.68 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.0
Q ss_pred HHHHHHHhCHHHHHHHHHHHHHhh
Q 033043 102 VSQYVEKHGWEAVERAIKAAEKET 125 (128)
Q Consensus 102 ~~~y~~e~G~eA~ekli~~a~~~~ 125 (128)
...+++++|.+++.++++....+.
T Consensus 16 ~~~l~~~~~r~~v~~~vR~~ld~~ 39 (40)
T PF12390_consen 16 IQDLIERYGRPLVVDAVREVLDEL 39 (40)
T ss_pred hHHHHHHcCHHHHHHHHHHHHHHh
Confidence 567899999999999998887654
No 19
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=28.82 E-value=96 Score=20.01 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=29.9
Q ss_pred HHHHHHHhhhhhhhhCCccCCCCCCCHHHHHHHhhcCHHHHH-HHHHHHHHhCHHHHHHHH
Q 033043 59 AAYIYEKHIRRYVKIGGYVSPSSNYTADQRKVLQMMSLDARK-SVSQYVEKHGWEAVERAI 118 (128)
Q Consensus 59 A~~iY~~~i~P~~~~~~~id~~~~~~~~~k~~~~~~~~~~~~-a~~~y~~e~G~eA~ekli 118 (128)
+..+|++ |.|.+.....|. .++... ..++.-++. +.-+++.++|.|.+.+-|
T Consensus 3 G~~~~~~-i~~~l~~~~~V~--lDF~gv-----~~~~ssFl~eafg~l~~~~~~~~~~~~l 55 (74)
T PF14213_consen 3 GERLRDE-IEPALKEGEKVV--LDFEGV-----ESITSSFLNEAFGQLVREFGEEEIKKRL 55 (74)
T ss_pred hHHHHHH-HHHHHhcCCeEE--EECCCc-----ccccHHHHHHHHHHHHHHcCHHHHhhee
Confidence 5678888 889997444343 223221 122233332 345678888988777654
No 20
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=28.19 E-value=1.5e+02 Score=26.83 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=38.6
Q ss_pred hccccCcHHHHHHHhhhhhhhhCCccCC-CCCCCHHHHHHHhhcC---H-----------HHHHHHHHHHH--HhCHHHH
Q 033043 52 VLPMFHGAAYIYEKHIRRYVKIGGYVSP-SSNYTADQRKVLQMMS---L-----------DARKSVSQYVE--KHGWEAV 114 (128)
Q Consensus 52 ~~P~~~GA~~iY~~~i~P~~~~~~~id~-~~~~~~~~k~~~~~~~---~-----------~~~~a~~~y~~--e~G~eA~ 114 (128)
++|...|.-||=+++||..+.+...+.. ..-+.+.-..+.+.+. + -....-++|.+ +.|.+-|
T Consensus 290 v~PsN~GrGYvlRriiRRa~r~~~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l 369 (552)
T PF01411_consen 290 VLPSNEGRGYVLRRIIRRAVRFGRKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLL 369 (552)
T ss_dssp --SSSSHHHHHHHHHHHHHHHHHHHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccCCcchHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999988864433321 1112222222222222 1 11222334433 5688888
Q ss_pred HHHHHHHHH
Q 033043 115 ERAIKAAEK 123 (128)
Q Consensus 115 ekli~~a~~ 123 (128)
+++|+.+.+
T Consensus 370 ~~~i~~~~~ 378 (552)
T PF01411_consen 370 EKLIKKLKK 378 (552)
T ss_dssp HHHHHHHHC
T ss_pred HHHHhhhcc
Confidence 888887653
No 21
>PF05418 Apo-VLDL-II: Apovitellenin I (Apo-VLDL-II); InterPro: IPR008404 This family consists of several avian apovitellenin I sequences. As part of the avian reproductive effort, large quantities of triglyceride-rich very-low-density lipoprotein (VLDL) particles are transported by receptor-mediated endocytosis into the female germ cells. Although the oocytes are surrounded by a layer of granulosa cells harbouring high levels of active lipoprotein lipase, non-lipolysed VLDL is transported into the yolk. This is because VLDL particles from laying chickens (Gallus gallus) are protected from lipolysis by apolipoprotein (apo)-VLDL-II, a potent dimeric lipoprotein lipase inhibitor []. Apo-VLDL-II is produced in the liver and secreted into the blood stream when induced by estrogen production in female birds.; GO: 0004857 enzyme inhibitor activity, 0006629 lipid metabolic process, 0042627 chylomicron
Probab=26.83 E-value=22 Score=24.50 Aligned_cols=16 Identities=63% Similarity=1.026 Sum_probs=12.6
Q ss_pred HHhccccCcHHHHHHHh
Q 033043 50 WLVLPMFHGAAYIYEKH 66 (128)
Q Consensus 50 wL~~P~~~GA~~iY~~~ 66 (128)
||++|. --|.|+|+.+
T Consensus 11 wlviPd-aiA~YiYEav 26 (82)
T PF05418_consen 11 WLVIPD-AIAAYIYEAV 26 (82)
T ss_pred eeeccH-HHHHHHHHHH
Confidence 677887 4688999976
No 22
>PHA01623 hypothetical protein
Probab=25.88 E-value=1.2e+02 Score=19.15 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=19.7
Q ss_pred hcCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 033043 93 MMSLDARKSVSQYVEKHGWEAVERAIKAAE 122 (128)
Q Consensus 93 ~~~~~~~~a~~~y~~e~G~eA~ekli~~a~ 122 (128)
.++++.....++|+.++|-. ...+|+.|.
T Consensus 19 rldeel~~~Ld~y~~~~g~~-rSe~IreAI 47 (56)
T PHA01623 19 YMDKDLKTRLKVYCAKNNLQ-LTQAIEEAI 47 (56)
T ss_pred EeCHHHHHHHHHHHHHcCCC-HHHHHHHHH
Confidence 45677788889999999854 444444443
No 23
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=25.48 E-value=58 Score=17.89 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=15.2
Q ss_pred HHHHHHHhCHHHHHHHHHHH
Q 033043 102 VSQYVEKHGWEAVERAIKAA 121 (128)
Q Consensus 102 ~~~y~~e~G~eA~ekli~~a 121 (128)
=..++++|||+.++-+++..
T Consensus 4 C~~~V~~y~~~ii~~l~~~~ 23 (35)
T PF03489_consen 4 CKNFVDQYGPQIIQLLEKQL 23 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 35689999999888876543
No 24
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=24.75 E-value=2.2e+02 Score=25.10 Aligned_cols=62 Identities=15% Similarity=0.346 Sum_probs=41.9
Q ss_pred ccc--cCcHHHHHHHhhhhhhh-h-------------CC-c-----c--------C-CCCCCCHHHHHHHhhcC----HH
Q 033043 53 LPM--FHGAAYIYEKHIRRYVK-I-------------GG-Y-----V--------S-PSSNYTADQRKVLQMMS----LD 97 (128)
Q Consensus 53 ~P~--~~GA~~iY~~~i~P~~~-~-------------~~-~-----i--------d-~~~~~~~~~k~~~~~~~----~~ 97 (128)
.|. +.|+.++.+.+..+++. . +. . . + ....|++..+..+..++ +.
T Consensus 402 ~p~~Gy~Ga~~l~~~i~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ea~~~l~~~P~f~r~~ 481 (511)
T TIGR01278 402 RPFLGFEGANVMADTVYNTFKLGLEEHLLEMFGDAGHDTPAHLEPAATAAISSAPAPGELGWTAEAEAELKKVPFFVRGK 481 (511)
T ss_pred CCccchHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCCcccccccccccccccCCCCCCCCCcCHHHHHHHhhCChhhhHH
Confidence 466 78999999999998862 2 10 0 0 0 01247777666665544 66
Q ss_pred HHHHHHHHHHHhCHHHH
Q 033043 98 ARKSVSQYVEKHGWEAV 114 (128)
Q Consensus 98 ~~~a~~~y~~e~G~eA~ 114 (128)
++..+|+|.+++|-+..
T Consensus 482 ~r~~~e~~a~~~g~~~i 498 (511)
T TIGR01278 482 VRRNTENFARERGYSVI 498 (511)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 88889999999997643
No 25
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=23.52 E-value=59 Score=26.54 Aligned_cols=16 Identities=13% Similarity=0.358 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhCH
Q 033043 96 LDARKSVSQYVEKHGW 111 (128)
Q Consensus 96 ~~~~~a~~~y~~e~G~ 111 (128)
++.+..+++||+||||
T Consensus 89 eesl~yl~~~i~enGP 104 (230)
T KOG2551|consen 89 EESLEYLEDYIKENGP 104 (230)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 5678999999999998
No 26
>smart00315 RGS Regulator of G protein signalling domain. RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.
Probab=23.36 E-value=2.2e+02 Score=18.57 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=11.6
Q ss_pred cCcHHHHHHHhhhhh
Q 033043 56 FHGAAYIYEKHIRRY 70 (128)
Q Consensus 56 ~~GA~~iY~~~i~P~ 70 (128)
..-|..||+++|.|-
T Consensus 47 ~~~a~~I~~~yi~~~ 61 (118)
T smart00315 47 IAKAREIYDKFLSPN 61 (118)
T ss_pred HHHHHHHHHHHhCCC
Confidence 466788999998874
No 27
>PF04293 SpoVR: SpoVR like protein; InterPro: IPR007390 One of the family members P37875 from SWISSPROT is Bacillus subtilis stage V sporulation protein R, which is involved in spore cortex formation []. Little is known about cortex biosynthesis, except that it depends on several sigma E controlled genes, including spoVR [].
Probab=21.75 E-value=1.1e+02 Score=27.00 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=24.4
Q ss_pred HHHHhhcCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 033043 88 RKVLQMMSLDARKSVSQYVEKHGWEAVERAIKAAE 122 (128)
Q Consensus 88 k~~~~~~~~~~~~a~~~y~~e~G~eA~ekli~~a~ 122 (128)
++..+.+. ....-+++|++++|.+++|+.|-+|.
T Consensus 126 ~~~~~~~~-~~a~~I~~~~~~~G~~~VE~~lDaa~ 159 (426)
T PF04293_consen 126 RDMLDYMA-FHARRIRRYEERYGREEVERFLDAAL 159 (426)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 34444333 23455788999999999999998875
No 28
>smart00526 H15 Domain in histone families 1 and 5.
Probab=21.32 E-value=2.1e+02 Score=17.86 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhC---HHHHHHHHHHHHHhh
Q 033043 98 ARKSVSQYVEKHG---WEAVERAIKAAEKET 125 (128)
Q Consensus 98 ~~~a~~~y~~e~G---~eA~ekli~~a~~~~ 125 (128)
.+.+..+||+++. ++.+..++..+.+..
T Consensus 25 S~~aI~kyi~~~~~~~~~~~~~~l~~~Lk~~ 55 (66)
T smart00526 25 SLQAIKKYIEANYKVLPNNFRSLLKLALKKL 55 (66)
T ss_pred CHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 3567888999983 578888888777654
No 29
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=21.22 E-value=53 Score=20.01 Aligned_cols=27 Identities=19% Similarity=0.344 Sum_probs=20.0
Q ss_pred cchHHHHHHHHHHHhccc-cCcHHHHHH
Q 033043 38 PFWAYMKLLFCMWLVLPM-FHGAAYIYE 64 (128)
Q Consensus 38 PfY~~~K~~fl~wL~~P~-~~GA~~iY~ 64 (128)
-++|.+=++.++||.-=. .+++.+||+
T Consensus 14 T~fYf~Ill~L~ylYgy~g~~~~~FIYN 41 (42)
T PF12459_consen 14 TLFYFAILLALIYLYGYSGIGQGPFIYN 41 (42)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCeecC
Confidence 356777788888988744 677888875
No 30
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=21.05 E-value=1.4e+02 Score=17.94 Aligned_cols=17 Identities=18% Similarity=0.565 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhCHH
Q 033043 96 LDARKSVSQYVEKHGWE 112 (128)
Q Consensus 96 ~~~~~a~~~y~~e~G~e 112 (128)
+.++..+|+|..++|-+
T Consensus 18 ~~~r~~~E~~Ar~~G~~ 34 (45)
T PF08369_consen 18 KKLRDAAEKYARERGYD 34 (45)
T ss_dssp HHHHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 45677899999999865
No 31
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber
Probab=20.27 E-value=1.9e+02 Score=19.36 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCH---HHHHHHHHHHHHhh
Q 033043 99 RKSVSQYVEKHGW---EAVERAIKAAEKET 125 (128)
Q Consensus 99 ~~a~~~y~~e~G~---eA~ekli~~a~~~~ 125 (128)
+.+..+||+++.+ +.+..++..+.+..
T Consensus 26 ~~aI~kyI~~~y~~~~~~~~~~l~~aLkk~ 55 (88)
T cd00073 26 LQAIKKYIEAKYKVDDENFNKLLKLALKKG 55 (88)
T ss_pred HHHHHHHHHHHCCcchHHHHHHHHHHHHHH
Confidence 5678899999977 66777777776644
Done!