Query 033043
Match_columns 128
No_of_seqs 174 out of 524
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:49:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b0b_C CENP-X, centromere prot 57.8 13 0.00044 24.5 3.9 32 93-124 28-59 (81)
2 4dra_E Centromere protein X; D 49.9 20 0.00069 23.8 3.9 32 93-124 32-63 (84)
3 3v9r_B MHF2, uncharacterized p 44.1 13 0.00044 25.2 2.1 31 93-123 21-51 (88)
4 3cz6_A DNA-binding protein RAP 42.2 86 0.0029 23.4 6.6 54 66-122 98-153 (168)
5 2dt6_A Splicing factor 3 subun 36.2 38 0.0013 20.7 3.4 25 97-121 5-29 (64)
6 3k5j_A Putative SUFU (suppress 32.0 15 0.00051 27.0 1.1 19 104-122 149-167 (183)
7 1x4o_A Splicing factor 4; stru 25.5 65 0.0022 20.5 3.2 25 97-121 19-43 (78)
8 2l09_A ASR4154 protein; proto- 24.7 97 0.0033 19.3 3.8 30 83-112 5-38 (62)
9 2dt7_B Splicing factor 3 subun 24.4 86 0.0029 20.5 3.7 24 97-120 33-56 (85)
10 3hpw_C Protein CCDA; alpha+bet 24.0 60 0.002 18.1 2.4 16 96-111 13-28 (36)
11 1ug0_A Splicing factor 4; SURP 23.4 83 0.0028 20.6 3.4 24 97-120 29-52 (88)
12 2kru_A Light-independent proto 22.1 1.1E+02 0.0037 19.2 3.6 31 82-112 5-39 (63)
13 3u50_C Telomerase-associated p 21.9 36 0.0012 25.1 1.6 41 82-122 92-137 (172)
No 1
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=57.82 E-value=13 Score=24.52 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=27.9
Q ss_pred hcCHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Q 033043 93 MMSLDARKSVSQYVEKHGWEAVERAIKAAEKE 124 (128)
Q Consensus 93 ~~~~~~~~a~~~y~~e~G~eA~ekli~~a~~~ 124 (128)
.+++|++..+.+|++-.-.||+.|++..|..+
T Consensus 28 rI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e 59 (81)
T 3b0b_C 28 RVNGDALLLMAELLKVFVREAAARAARQAQAE 59 (81)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56789999999999999999999998877543
No 2
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=49.94 E-value=20 Score=23.79 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=28.3
Q ss_pred hcCHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Q 033043 93 MMSLDARKSVSQYVEKHGWEAVERAIKAAEKE 124 (128)
Q Consensus 93 ~~~~~~~~a~~~y~~e~G~eA~ekli~~a~~~ 124 (128)
.+++|++..+.+|++-.-.||+.|++..|..+
T Consensus 32 kIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e 63 (84)
T 4dra_E 32 KVSGDALQLMVELLKVFVVEAAVRGVRQAQAE 63 (84)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999999999999999877643
No 3
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=44.08 E-value=13 Score=25.17 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=26.4
Q ss_pred hcCHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Q 033043 93 MMSLDARKSVSQYVEKHGWEAVERAIKAAEK 123 (128)
Q Consensus 93 ~~~~~~~~a~~~y~~e~G~eA~ekli~~a~~ 123 (128)
.+++|+...+.+|++-.-.||+-|.+..++.
T Consensus 21 rIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 21 KIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp EECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999999999876654
No 4
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=42.19 E-value=86 Score=23.40 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=36.8
Q ss_pred hhhhhhhhCCcc--CCCCCCCHHHHHHHhhcCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Q 033043 66 HIRRYVKIGGYV--SPSSNYTADQRKVLQMMSLDARKSVSQYVEKHGWEAVERAIKAAE 122 (128)
Q Consensus 66 ~i~P~~~~~~~i--d~~~~~~~~~k~~~~~~~~~~~~a~~~y~~e~G~eA~ekli~~a~ 122 (128)
.|--.++.+..+ ++-..|++.-.+.+..-++ ...++.+++||.+.++.-++.-.
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~---~dikrL~kKHG~erie~R~~FLe 153 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQ---EQIRKLVKKHGTGRMEMRKRFFE 153 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCH---HHHHHHHHHHCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCH---HHHHHHHHHhCHHHHHHHHHHHH
Confidence 344444444444 3447788887788775554 34789999999999998766543
No 5
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=36.19 E-value=38 Score=20.72 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHH
Q 033043 97 DARKSVSQYVEKHGWEAVERAIKAA 121 (128)
Q Consensus 97 ~~~~a~~~y~~e~G~eA~ekli~~a 121 (128)
++...+.+|+.+||++--+.++++-
T Consensus 5 ~iI~ktA~fVarnG~~fE~~l~~~e 29 (64)
T 2dt6_A 5 NIVDKTASFVARNGPEFEARIRQNE 29 (64)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 4556678899999997666665553
No 6
>3k5j_A Putative SUFU (suppressor of fused protein) homol; YP_208451.1; HET: MSE; 1.40A {Neisseria gonorrhoeae fa 1090}
Probab=31.98 E-value=15 Score=27.02 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=16.3
Q ss_pred HHHHHhCHHHHHHHHHHHH
Q 033043 104 QYVEKHGWEAVERAIKAAE 122 (128)
Q Consensus 104 ~y~~e~G~eA~ekli~~a~ 122 (128)
+|.++||.|||++++..++
T Consensus 149 ~~~~~~G~daL~~~l~~~g 167 (183)
T 3k5j_A 149 LFLNTHSVEELETKFDEAG 167 (183)
T ss_dssp HHTTSSCHHHHHHHHHHHT
T ss_pred HHHHHhCHHHHHHHHHHcC
Confidence 5889999999999988653
No 7
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=25.51 E-value=65 Score=20.55 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHHH
Q 033043 97 DARKSVSQYVEKHGWEAVERAIKAA 121 (128)
Q Consensus 97 ~~~~a~~~y~~e~G~eA~ekli~~a 121 (128)
.+...+.+|+.+||++--++++++-
T Consensus 19 ~iIdktA~fVaknG~~fE~~l~~~~ 43 (78)
T 1x4o_A 19 NLAEKLARFIADGGPEVETIALQNN 43 (78)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 3455678899999987655555543
No 8
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=24.74 E-value=97 Score=19.34 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=20.3
Q ss_pred CCHHHHHHHhhcC----HHHHHHHHHHHHHhCHH
Q 033043 83 YTADQRKVLQMMS----LDARKSVSQYVEKHGWE 112 (128)
Q Consensus 83 ~~~~~k~~~~~~~----~~~~~a~~~y~~e~G~e 112 (128)
|++..+.-+..++ +-++..+|+|..++|-+
T Consensus 5 Wt~EAe~~LkkIP~FVR~kvrr~tE~~Are~G~~ 38 (62)
T 2l09_A 5 WTSEAKTKLKNIPFFARSQAKARIEQLARQAEQD 38 (62)
T ss_dssp ECHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Confidence 4555555454443 56788899999999854
No 9
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=24.42 E-value=86 Score=20.47 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHH
Q 033043 97 DARKSVSQYVEKHGWEAVERAIKA 120 (128)
Q Consensus 97 ~~~~a~~~y~~e~G~eA~ekli~~ 120 (128)
++...+++|+.+||.+=.+.++++
T Consensus 33 ~iIk~TA~FVArnG~~Fe~~l~~r 56 (85)
T 2dt7_B 33 DVVKLTAQFVARNGRQFLTQLMQK 56 (85)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh
Confidence 667788999999999655555554
No 10
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=24.01 E-value=60 Score=18.10 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhCH
Q 033043 96 LDARKSVSQYVEKHGW 111 (128)
Q Consensus 96 ~~~~~a~~~y~~e~G~ 111 (128)
.++..+..+|+++||.
T Consensus 13 ~~ai~~~N~~ve~~Gl 28 (36)
T 3hpw_C 13 QEGMAEVARFIEMNGS 28 (36)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4678889999999994
No 11
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=23.44 E-value=83 Score=20.56 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHH
Q 033043 97 DARKSVSQYVEKHGWEAVERAIKA 120 (128)
Q Consensus 97 ~~~~a~~~y~~e~G~eA~ekli~~ 120 (128)
.+...+.+|+.+||++--++++++
T Consensus 29 ~iIdktA~fVaknG~~FE~~l~~~ 52 (88)
T 1ug0_A 29 RVIEKLARFVAEGGPELEKVAMED 52 (88)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHh
Confidence 445668899999998755555554
No 12
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=22.14 E-value=1.1e+02 Score=19.15 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhhcC----HHHHHHHHHHHHHhCHH
Q 033043 82 NYTADQRKVLQMMS----LDARKSVSQYVEKHGWE 112 (128)
Q Consensus 82 ~~~~~~k~~~~~~~----~~~~~a~~~y~~e~G~e 112 (128)
.|++..+.-+..++ +-++..+|+|..++|-+
T Consensus 5 ~Wt~EAe~~LkkIP~FVR~kvrr~tE~~Are~G~~ 39 (63)
T 2kru_A 5 SWTAEAEKMLGKVPFFVRKKVRKNTDNYAREIGEP 39 (63)
T ss_dssp EECHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC
Confidence 35555555555554 55677899999999854
No 13
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=21.86 E-value=36 Score=25.12 Aligned_cols=41 Identities=10% Similarity=0.218 Sum_probs=27.3
Q ss_pred CCCHHHHHHHhhcC-HHHHHHHHHH---HHHhC-HHHHHHHHHHHH
Q 033043 82 NYTADQRKVLQMMS-LDARKSVSQY---VEKHG-WEAVERAIKAAE 122 (128)
Q Consensus 82 ~~~~~~k~~~~~~~-~~~~~a~~~y---~~e~G-~eA~ekli~~a~ 122 (128)
-+.+..++++++++ +..+..|..+ ++|+| +++|+++++.+.
T Consensus 92 ~F~e~ae~ilG~~~~~~~~~~A~eL~~~l~e~~~~~~~~~~~~~~~ 137 (172)
T 3u50_C 92 IFDQQSSQLINQIDPSIHVQEAGQYVKNCIENGQEEIIRQLFSKLD 137 (172)
T ss_dssp ECHHHHHHHHHHHCTTSCGGGHHHHHHHHHTTTCHHHHHHHHHTTT
T ss_pred EEhHHHHHHhCCCCCccchhhHHHHHHHHHhcCcHHHHHHHHHhhc
Confidence 45666778887634 3334445555 66888 999999998653
Done!