Query 033043
Match_columns 128
No_of_seqs 174 out of 524
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 14:50:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033043.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033043hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4oa1 a.217.1.1 (A:8-72) Spl 67.9 2.6 0.00019 24.9 3.4 23 97-120 12-34 (65)
2 d1ug0a_ a.217.1.1 (A:) Splicin 56.0 6.6 0.00048 24.4 3.9 23 97-120 29-51 (88)
3 d2dt7b1 a.217.1.1 (B:134-217) 37.2 18 0.0013 22.0 3.7 24 97-120 32-55 (84)
4 d1riqa1 a.203.1.1 (A:237-457) 34.7 34 0.0025 24.3 5.4 24 52-75 48-71 (221)
5 d2dt6a1 a.217.1.1 (A:48-110) S 28.8 28 0.0021 19.9 3.4 23 97-120 4-26 (63)
6 d2hzaa1 a.43.1.3 (A:1-48) Nick 24.7 54 0.0039 18.0 4.5 33 94-126 8-44 (48)
7 d2bj7a1 a.43.1.3 (A:1-50) Nick 22.8 61 0.0044 17.9 4.1 33 94-126 10-46 (50)
8 d2ik8b1 a.91.1.1 (B:65-180) Re 20.5 22 0.0016 21.6 1.7 13 58-70 49-61 (116)
9 d1dd9a_ e.13.1.1 (A:) DNA prim 19.9 18 0.0013 26.9 1.4 18 104-121 234-251 (314)
10 d1u9pa1 a.43.1.1 (A:72-107) Ar 19.7 61 0.0044 16.7 4.5 29 97-125 2-34 (36)
No 1
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=67.90 E-value=2.6 Score=24.91 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHH
Q 033043 97 DARKSVSQYVEKHGWEAVERAIKA 120 (128)
Q Consensus 97 ~~~~a~~~y~~e~G~eA~ekli~~ 120 (128)
++...+.+|+.+||++ ||..|..
T Consensus 12 ~iI~~tA~~Vak~G~~-fE~~l~~ 34 (65)
T d1x4oa1 12 NLAEKLARFIADGGPE-VETIALQ 34 (65)
T ss_dssp HHHHHHHHHHHHSCTT-HHHHHHH
T ss_pred HHHHHHHHHHHHccHH-HHHHHHH
Confidence 4456688999999988 6666543
No 2
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=56.01 E-value=6.6 Score=24.40 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHH
Q 033043 97 DARKSVSQYVEKHGWEAVERAIKA 120 (128)
Q Consensus 97 ~~~~a~~~y~~e~G~eA~ekli~~ 120 (128)
.+...+.+|+.+||++ ||.+|..
T Consensus 29 ~iI~~tA~~Vak~G~~-fE~~l~~ 51 (88)
T d1ug0a_ 29 RVIEKLARFVAEGGPE-LEKVAME 51 (88)
T ss_dssp HHHHHHHHHHHHHCHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhCHH-HHHHHHH
Confidence 4556688999999999 5555543
No 3
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.16 E-value=18 Score=22.02 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHH
Q 033043 97 DARKSVSQYVEKHGWEAVERAIKA 120 (128)
Q Consensus 97 ~~~~a~~~y~~e~G~eA~ekli~~ 120 (128)
|+...+++|+.+||++-.+.++++
T Consensus 32 ~iI~~tA~fVa~~G~~fe~~l~~~ 55 (84)
T d2dt7b1 32 DVVKLTAQFVARNGRQFLTQLMQK 55 (84)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHc
Confidence 577788999999999755555444
No 4
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=34.68 E-value=34 Score=24.28 Aligned_cols=24 Identities=29% Similarity=0.628 Sum_probs=20.6
Q ss_pred hccccCcHHHHHHHhhhhhhhhCC
Q 033043 52 VLPMFHGAAYIYEKHIRRYVKIGG 75 (128)
Q Consensus 52 ~~P~~~GA~~iY~~~i~P~~~~~~ 75 (128)
++|...|.-||=+++||.-+.|..
T Consensus 48 v~PsN~grGYvlRriiRRa~r~~~ 71 (221)
T d1riqa1 48 VIPSNEGRGYVIRRILRRAMRFGY 71 (221)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCchHHHHHHHHHHHHHH
Confidence 689999999999999999886433
No 5
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.81 E-value=28 Score=19.91 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhCHHHHHHHHHH
Q 033043 97 DARKSVSQYVEKHGWEAVERAIKA 120 (128)
Q Consensus 97 ~~~~a~~~y~~e~G~eA~ekli~~ 120 (128)
.+...+.+|+.+||++ ||..|..
T Consensus 4 ~iI~~tA~fVak~G~~-fE~~l~~ 26 (63)
T d2dt6a1 4 NIVDKTASFVARNGPE-FEARIRQ 26 (63)
T ss_dssp HHHHHHHHHHHHHCTH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcHH-HHHHHHH
Confidence 3455678899999998 5555543
No 6
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.74 E-value=54 Score=17.99 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=26.0
Q ss_pred cCHHHHHHHHHHHHHhC----HHHHHHHHHHHHHhhh
Q 033043 94 MSLDARKSVSQYVEKHG----WEAVERAIKAAEKETK 126 (128)
Q Consensus 94 ~~~~~~~a~~~y~~e~G----~eA~ekli~~a~~~~k 126 (128)
++++.+...++++++.| +||+-.+|+....+.+
T Consensus 8 lp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~l~~~~ 44 (48)
T d2hzaa1 8 LDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEA 44 (48)
T ss_dssp ECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 56778888999999987 7888888887765543
No 7
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=22.81 E-value=61 Score=17.93 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=25.3
Q ss_pred cCHHHHHHHHHHHHHhC----HHHHHHHHHHHHHhhh
Q 033043 94 MSLDARKSVSQYVEKHG----WEAVERAIKAAEKETK 126 (128)
Q Consensus 94 ~~~~~~~a~~~y~~e~G----~eA~ekli~~a~~~~k 126 (128)
++++.+...++++++.| +||+-.+|+....+.+
T Consensus 10 lp~~Ll~~lD~~v~~~gy~nRSEaIRdliR~~l~~~~ 46 (50)
T d2bj7a1 10 IPSKLLEKFDQIIEEIGYENRSEAIRDLIRDFIIRHE 46 (50)
T ss_dssp EEHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 45677888889999887 7888888887766543
No 8
>d2ik8b1 a.91.1.1 (B:65-180) Regulator of G-protein signaling 16, RGS16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.45 E-value=22 Score=21.59 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=10.3
Q ss_pred cHHHHHHHhhhhh
Q 033043 58 GAAYIYEKHIRRY 70 (128)
Q Consensus 58 GA~~iY~~~i~P~ 70 (128)
-|..||+++|.|-
T Consensus 49 ~a~~Iy~~yi~~~ 61 (116)
T d2ik8b1 49 RAHQIFEEFICSE 61 (116)
T ss_dssp HHHHHHHHHTSTT
T ss_pred HHHHHHHHHhcCC
Confidence 4678999999873
No 9
>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}
Probab=19.88 E-value=18 Score=26.89 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=14.8
Q ss_pred HHHHHhCHHHHHHHHHHH
Q 033043 104 QYVEKHGWEAVERAIKAA 121 (128)
Q Consensus 104 ~y~~e~G~eA~ekli~~a 121 (128)
.|++++|+|+|.+++..+
T Consensus 234 e~l~k~G~e~~~~ll~~a 251 (314)
T d1dd9a_ 234 TLVRKEGKEAFEARMEQA 251 (314)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHhcC
Confidence 489999999999987643
No 10
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=19.68 E-value=61 Score=16.70 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCH----HHHHHHHHHHHHhh
Q 033043 97 DARKSVSQYVEKHGW----EAVERAIKAAEKET 125 (128)
Q Consensus 97 ~~~~a~~~y~~e~G~----eA~ekli~~a~~~~ 125 (128)
+++.-+.+-.+|||- +...+.|.+-.|+.
T Consensus 2 evldlvrkvaeeng~s~ns~iy~~vmes~kkeg 34 (36)
T d1u9pa1 2 EVLDLVRKVAEENGRSVNSEIYQRVMESFKKEG 34 (36)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHcCcchhHHHHHHHHHHHHHcc
Confidence 455567777888884 45666666666654
Done!