BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033044
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KS6|A Chain A, Nmr Solution Structure Of Alg13 --- Obtained With
           Iterative Cs-Rosetta From Backbone Nmr Data
          Length = 201

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query: 39  VISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHP 89
           VISHAG+GSI ++LRL KPLIV VN+ LMDNHQ ++A++  +  +++   P
Sbjct: 113 VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAP 163


>pdb|2JZC|A Chain A, Nmr Solution Structure Of Alg13: The Sugar Donor Subunit
           Of A Yeast N-Acetylglucosamine Transferase. Northeast
           Structural Genomics Consortium Target Yg1
          Length = 224

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query: 39  VISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHP 89
           VISHAG+GSI ++LRL KPLIV VN+ LMDNHQ ++A++  +  +++   P
Sbjct: 136 VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCAP 186


>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
           Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
 pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
           Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
          Length = 415

 Score = 28.5 bits (62), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 40  ISHAGSGSIFETLRLGKPLIVV 61
           ++H G G++ E L  G+PL+VV
Sbjct: 318 VTHGGXGTLXEALYWGRPLVVV 339


>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
           Glycosyltransferase, Tdp Bound Form
 pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
           Glycosyltransferase, Tdp Bound Form
          Length = 416

 Score = 28.5 bits (62), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 40  ISHAGSGSIFETLRLGKPLIVV 61
           ++H G G++ E L  G+PL+VV
Sbjct: 318 VTHGGXGTLXEALYWGRPLVVV 339


>pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris
 pdb|1AX4|B Chain B, Tryptophanase From Proteus Vulgaris
 pdb|1AX4|C Chain C, Tryptophanase From Proteus Vulgaris
 pdb|1AX4|D Chain D, Tryptophanase From Proteus Vulgaris
          Length = 467

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 88  HPQSLHQVIVGMDLKSLLPYQPGDATPVAKLIN 120
           +P   H V V  D K L+P  PGD  P   +IN
Sbjct: 348 YPTGGHAVFV--DCKKLVPQIPGDQFPAQAVIN 378


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.140    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,534,585
Number of Sequences: 62578
Number of extensions: 118202
Number of successful extensions: 191
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 7
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)