Query 033044
Match_columns 128
No_of_seqs 168 out of 1104
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:07:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3349 Predicted glycosyltran 99.9 3.2E-24 7E-29 150.8 10.9 125 1-125 43-170 (170)
2 PF04101 Glyco_tran_28_C: Glyc 99.9 1.2E-23 2.6E-28 149.9 3.0 101 2-102 39-144 (167)
3 COG0707 MurG UDP-N-acetylgluco 99.9 4.3E-21 9.3E-26 152.6 11.7 104 20-123 237-355 (357)
4 PRK12446 undecaprenyldiphospho 99.8 1.1E-17 2.4E-22 132.5 11.4 103 19-121 235-351 (352)
5 PF13528 Glyco_trans_1_3: Glyc 99.7 6.9E-17 1.5E-21 124.5 10.9 81 17-99 231-317 (318)
6 COG5017 Uncharacterized conser 99.7 3.6E-16 7.7E-21 108.7 10.4 102 1-110 37-146 (161)
7 COG1819 Glycosyl transferases, 99.6 7.4E-16 1.6E-20 124.4 9.5 103 16-123 282-399 (406)
8 TIGR00661 MJ1255 conserved hyp 99.6 2.7E-15 5.9E-20 117.0 10.5 81 17-100 228-309 (321)
9 cd03784 GT1_Gtf_like This fami 99.6 1.2E-15 2.6E-20 121.2 7.7 80 17-101 287-371 (401)
10 PHA03392 egt ecdysteroid UDP-g 99.6 2.6E-15 5.7E-20 124.2 7.3 81 16-101 344-431 (507)
11 TIGR01426 MGT glycosyltransfer 99.6 1.2E-14 2.5E-19 115.7 9.5 102 17-123 274-390 (392)
12 PRK00726 murG undecaprenyldiph 99.6 2.7E-14 5.9E-19 111.8 10.8 107 17-123 234-355 (357)
13 COG4671 Predicted glycosyl tra 99.5 4.7E-14 1E-18 111.3 10.7 106 17-123 276-389 (400)
14 PRK13608 diacylglycerol glucos 99.5 7.6E-14 1.6E-18 111.6 10.9 103 18-124 256-370 (391)
15 PF00201 UDPGT: UDP-glucoronos 99.5 5.5E-14 1.2E-18 114.9 9.0 81 16-101 321-408 (500)
16 PLN02605 monogalactosyldiacylg 99.5 3.4E-13 7.4E-18 107.3 10.5 103 18-123 265-379 (382)
17 cd03785 GT1_MurG MurG is an N- 99.4 2.1E-12 4.6E-17 100.2 10.8 85 17-101 234-323 (350)
18 PRK13609 diacylglycerol glucos 99.4 2.5E-12 5.4E-17 101.7 10.8 104 18-125 256-371 (380)
19 TIGR03492 conserved hypothetic 99.4 4.8E-12 1E-16 101.9 11.4 98 19-122 280-395 (396)
20 TIGR03590 PseG pseudaminic aci 99.4 1.7E-12 3.6E-17 100.1 6.8 56 18-78 224-279 (279)
21 PLN02410 UDP-glucoronosyl/UDP- 99.3 4.5E-12 9.8E-17 103.8 6.8 79 18-101 324-409 (451)
22 PLN03004 UDP-glycosyltransfera 99.3 8.6E-12 1.9E-16 102.2 7.7 79 18-101 334-423 (451)
23 PLN02670 transferase, transfer 99.3 4.5E-12 9.8E-17 104.3 6.0 77 20-101 341-428 (472)
24 PLN02210 UDP-glucosyl transfer 99.3 5.9E-12 1.3E-16 103.2 6.6 77 20-101 326-414 (456)
25 PLN02554 UDP-glycosyltransfera 99.3 7.1E-12 1.5E-16 103.2 6.5 78 19-101 343-439 (481)
26 PLN02562 UDP-glycosyltransfera 99.3 1.5E-11 3.2E-16 100.7 8.2 79 18-101 328-412 (448)
27 PLN02448 UDP-glycosyltransfera 99.3 1.5E-11 3.3E-16 100.7 7.8 78 19-101 324-414 (459)
28 PLN03007 UDP-glucosyltransfera 99.3 6.1E-12 1.3E-16 103.6 5.5 80 17-101 344-439 (482)
29 PLN02992 coniferyl-alcohol glu 99.3 1.4E-11 3.1E-16 101.6 7.4 79 18-101 338-426 (481)
30 PLN02207 UDP-glycosyltransfera 99.3 8.4E-12 1.8E-16 102.6 6.0 79 18-101 332-425 (468)
31 PLN02173 UDP-glucosyl transfer 99.2 1.3E-11 2.8E-16 101.0 6.7 79 18-101 317-407 (449)
32 PLN02152 indole-3-acetate beta 99.2 1.6E-11 3.4E-16 100.7 6.3 79 18-101 327-416 (455)
33 PLN02208 glycosyltransferase f 99.2 2.9E-11 6.3E-16 98.8 7.8 79 18-101 311-400 (442)
34 PLN02555 limonoid glucosyltran 99.2 2.3E-11 5E-16 100.3 6.6 78 18-100 337-427 (480)
35 PLN02764 glycosyltransferase f 99.2 5.5E-11 1.2E-15 97.5 7.9 79 18-101 317-406 (453)
36 PLN02863 UDP-glucoronosyl/UDP- 99.2 4.1E-11 8.9E-16 98.7 6.9 77 19-100 344-431 (477)
37 PLN00414 glycosyltransferase f 99.2 8.5E-11 1.8E-15 96.2 8.6 78 19-101 313-401 (446)
38 PLN00164 glucosyltransferase; 99.2 8.9E-11 1.9E-15 96.8 7.9 78 19-101 340-430 (480)
39 TIGR01133 murG undecaprenyldip 99.2 3.2E-10 6.8E-15 88.0 10.0 73 28-101 243-320 (348)
40 PLN02167 UDP-glycosyltransfera 99.1 9.1E-11 2E-15 96.6 6.9 76 21-101 343-433 (475)
41 KOG1192 UDP-glucuronosyl and U 99.1 1.9E-10 4.2E-15 93.7 7.2 78 18-99 335-419 (496)
42 TIGR00215 lpxB lipid-A-disacch 99.1 6.9E-11 1.5E-15 94.7 3.7 81 21-102 253-347 (385)
43 PLN02534 UDP-glycosyltransfera 99.0 1.3E-09 2.7E-14 90.3 7.5 80 17-101 343-443 (491)
44 PLN03015 UDP-glucosyl transfer 99.0 1.9E-09 4.1E-14 88.8 8.3 76 20-100 337-424 (470)
45 PRK00025 lpxB lipid-A-disaccha 98.9 8.7E-10 1.9E-14 86.9 4.5 98 25-123 251-375 (380)
46 COG3980 spsG Spore coat polysa 98.9 2.6E-09 5.7E-14 82.5 6.4 80 16-100 208-291 (318)
47 PRK14089 ipid-A-disaccharide s 98.5 9.5E-08 2.1E-12 76.1 4.5 93 25-121 225-346 (347)
48 cd03786 GT1_UDP-GlcNAc_2-Epime 98.5 5.9E-07 1.3E-11 70.1 7.5 93 18-119 258-362 (363)
49 PRK05749 3-deoxy-D-manno-octul 98.2 1.2E-05 2.7E-10 64.6 8.7 79 19-101 303-387 (425)
50 cd03808 GT1_cap1E_like This fa 98.1 2.5E-05 5.4E-10 58.7 8.4 77 17-101 245-328 (359)
51 TIGR00236 wecB UDP-N-acetylglu 98.1 4.9E-05 1.1E-09 59.9 10.2 95 18-121 255-363 (365)
52 cd03814 GT1_like_2 This family 98.0 4.4E-05 9.6E-10 58.0 8.5 77 17-101 246-331 (364)
53 cd03801 GT1_YqgM_like This fam 98.0 4.1E-05 8.9E-10 57.3 8.0 77 17-101 255-340 (374)
54 cd03823 GT1_ExpE7_like This fa 98.0 3.3E-05 7.1E-10 58.5 7.5 77 17-101 242-328 (359)
55 cd03820 GT1_amsD_like This fam 97.9 5.2E-05 1.1E-09 56.7 7.9 77 17-101 234-318 (348)
56 PF00534 Glycos_transf_1: Glyc 97.9 0.00014 3.1E-09 50.8 9.5 79 16-102 71-158 (172)
57 cd03807 GT1_WbnK_like This fam 97.9 5.8E-05 1.3E-09 56.9 7.6 76 18-101 251-331 (365)
58 cd04951 GT1_WbdM_like This fam 97.8 5.5E-05 1.2E-09 58.0 6.6 76 17-100 244-324 (360)
59 PF13692 Glyco_trans_1_4: Glyc 97.8 5.2E-05 1.1E-09 51.1 5.7 76 17-101 52-134 (135)
60 PF04007 DUF354: Protein of un 97.8 0.00027 5.8E-09 56.3 9.9 88 29-122 242-333 (335)
61 cd03819 GT1_WavL_like This fam 97.7 0.0002 4.2E-09 55.0 8.3 76 17-100 245-328 (355)
62 cd03821 GT1_Bme6_like This fam 97.7 0.00013 2.9E-09 55.2 7.1 76 17-101 261-344 (375)
63 cd03795 GT1_like_4 This family 97.7 0.00026 5.6E-09 54.2 8.6 79 16-101 242-331 (357)
64 cd05844 GT1_like_7 Glycosyltra 97.7 0.00017 3.6E-09 55.8 7.2 77 17-101 244-335 (367)
65 cd03798 GT1_wlbH_like This fam 97.7 0.00027 5.8E-09 53.2 8.1 78 17-102 258-344 (377)
66 cd04962 GT1_like_5 This family 97.6 0.00025 5.5E-09 54.9 7.7 76 18-101 253-335 (371)
67 cd03794 GT1_wbuB_like This fam 97.6 0.00018 4E-09 54.5 6.5 75 18-100 275-363 (394)
68 cd03799 GT1_amsK_like This is 97.6 0.00029 6.2E-09 53.9 7.6 77 17-101 235-326 (355)
69 cd03812 GT1_CapH_like This fam 97.6 0.00035 7.5E-09 53.7 8.0 76 17-101 248-330 (358)
70 cd03817 GT1_UGDG_like This fam 97.6 0.00024 5.3E-09 53.8 6.9 77 17-101 258-342 (374)
71 cd03825 GT1_wcfI_like This fam 97.6 0.00033 7.2E-09 53.7 7.3 77 17-101 243-329 (365)
72 cd03822 GT1_ecORF704_like This 97.6 0.00041 8.9E-09 52.8 7.7 76 17-101 246-333 (366)
73 TIGR03088 stp2 sugar transfera 97.6 0.00038 8.2E-09 54.5 7.6 76 18-101 255-337 (374)
74 cd03811 GT1_WabH_like This fam 97.6 0.00077 1.7E-08 50.3 8.9 75 17-99 245-326 (353)
75 TIGR03087 stp1 sugar transfera 97.5 0.00015 3.2E-09 57.8 5.0 76 17-101 279-361 (397)
76 cd03800 GT1_Sucrose_synthase T 97.5 0.00056 1.2E-08 53.3 7.8 77 17-101 282-367 (398)
77 PLN02871 UDP-sulfoquinovose:DA 97.5 0.0005 1.1E-08 56.1 7.7 76 18-101 312-399 (465)
78 PRK15484 lipopolysaccharide 1, 97.5 0.00056 1.2E-08 54.5 7.7 78 16-101 255-343 (380)
79 PLN02275 transferase, transfer 97.5 0.00092 2E-08 53.0 8.8 74 19-100 287-371 (371)
80 cd04949 GT1_gtfA_like This fam 97.3 0.00066 1.4E-08 53.0 6.2 78 17-101 260-344 (372)
81 cd03804 GT1_wbaZ_like This fam 97.3 0.00087 1.9E-08 52.0 6.6 78 16-102 240-326 (351)
82 cd03816 GT1_ALG1_like This fam 97.2 0.0022 4.7E-08 51.8 8.5 76 19-102 295-381 (415)
83 PRK09922 UDP-D-galactose:(gluc 97.2 0.0024 5.2E-08 50.2 8.0 78 17-102 235-324 (359)
84 PRK15427 colanic acid biosynth 97.1 0.0031 6.8E-08 50.9 8.5 76 18-101 279-369 (406)
85 TIGR03449 mycothiol_MshA UDP-N 97.1 0.0023 5E-08 50.6 7.6 76 18-101 283-367 (405)
86 cd03818 GT1_ExpC_like This fam 97.1 0.0019 4.2E-08 51.3 7.1 76 18-101 281-365 (396)
87 cd03796 GT1_PIG-A_like This fa 96.9 0.0032 6.9E-08 50.2 6.9 76 18-101 250-332 (398)
88 cd01635 Glycosyltransferase_GT 96.9 0.003 6.5E-08 44.7 5.9 49 17-65 160-215 (229)
89 PF02350 Epimerase_2: UDP-N-ac 96.9 0.0047 1E-07 49.2 7.5 93 19-120 240-346 (346)
90 cd03805 GT1_ALG2_like This fam 96.8 0.008 1.7E-07 47.1 7.9 77 17-101 279-363 (392)
91 TIGR02149 glgA_Coryne glycogen 96.8 0.0096 2.1E-07 46.5 8.3 67 27-101 272-351 (388)
92 cd03809 GT1_mtfB_like This fam 96.8 0.0012 2.5E-08 50.3 2.9 76 17-100 252-334 (365)
93 PHA01633 putative glycosyl tra 96.8 0.0066 1.4E-07 48.4 7.2 84 18-101 201-306 (335)
94 cd03792 GT1_Trehalose_phosphor 96.7 0.0081 1.8E-07 47.2 7.7 76 18-101 252-336 (372)
95 cd03802 GT1_AviGT4_like This f 96.7 0.0083 1.8E-07 45.6 7.5 76 17-100 223-306 (335)
96 cd04946 GT1_AmsK_like This fam 96.6 0.012 2.6E-07 47.4 7.9 76 18-101 289-376 (407)
97 cd04950 GT1_like_1 Glycosyltra 96.6 0.0065 1.4E-07 48.2 6.1 73 17-100 253-338 (373)
98 PF02684 LpxB: Lipid-A-disacch 96.6 0.012 2.6E-07 47.5 7.6 78 20-101 245-339 (373)
99 TIGR02472 sucr_P_syn_N sucrose 96.4 0.015 3.2E-07 47.3 7.5 76 18-101 317-405 (439)
100 PRK10307 putative glycosyl tra 96.4 0.017 3.7E-07 46.1 7.5 77 19-101 285-372 (412)
101 cd03813 GT1_like_3 This family 96.4 0.013 2.9E-07 48.1 6.9 75 18-101 354-441 (475)
102 cd04955 GT1_like_6 This family 96.3 0.011 2.4E-07 45.3 5.6 76 17-101 247-329 (363)
103 COG0381 WecB UDP-N-acetylgluco 96.2 0.026 5.6E-07 45.7 7.8 89 28-125 274-374 (383)
104 PF06258 Mito_fiss_Elm1: Mitoc 96.2 0.063 1.4E-06 42.4 9.4 85 29-123 222-309 (311)
105 PRK09814 beta-1,6-galactofuran 96.2 0.026 5.7E-07 44.2 7.3 77 17-101 206-299 (333)
106 PRK15490 Vi polysaccharide bio 96.1 0.033 7.3E-07 47.4 8.2 48 17-64 454-505 (578)
107 TIGR02918 accessory Sec system 96.1 0.023 5.1E-07 47.4 7.0 75 18-100 376-465 (500)
108 COG1519 KdtA 3-deoxy-D-manno-o 96.1 0.049 1.1E-06 44.6 8.5 79 18-101 300-385 (419)
109 PRK15179 Vi polysaccharide bio 96.0 0.041 8.9E-07 47.8 8.2 76 17-100 573-657 (694)
110 PF04464 Glyphos_transf: CDP-G 95.9 0.013 2.8E-07 46.4 4.6 102 19-121 253-369 (369)
111 TIGR03568 NeuC_NnaA UDP-N-acet 95.8 0.099 2.1E-06 41.8 9.4 72 18-101 262-338 (365)
112 PLN02846 digalactosyldiacylgly 95.8 0.077 1.7E-06 44.1 8.8 100 17-125 282-391 (462)
113 PF05159 Capsule_synth: Capsul 95.6 0.031 6.8E-07 42.5 5.4 45 19-64 183-227 (269)
114 PLN02501 digalactosyldiacylgly 95.5 0.063 1.4E-06 47.0 7.3 100 16-124 599-708 (794)
115 cd03806 GT1_ALG11_like This fa 95.4 0.063 1.4E-06 43.5 6.9 79 18-101 305-391 (419)
116 COG3660 Predicted nucleoside-d 95.0 0.16 3.5E-06 39.6 7.7 89 30-125 239-328 (329)
117 COG4370 Uncharacterized protei 94.8 0.083 1.8E-06 42.1 5.7 100 19-123 295-411 (412)
118 TIGR02468 sucrsPsyn_pln sucros 94.4 0.18 4E-06 45.7 7.5 75 18-101 548-636 (1050)
119 TIGR02095 glgA glycogen/starch 94.3 0.17 3.7E-06 41.4 6.7 82 18-101 346-436 (473)
120 PHA01630 putative group 1 glyc 94.1 0.083 1.8E-06 41.7 4.3 38 27-64 201-242 (331)
121 cd03791 GT1_Glycogen_synthase_ 94.0 0.1 2.2E-06 42.4 4.9 81 18-101 351-441 (476)
122 TIGR00730 conserved hypothetic 93.9 0.75 1.6E-05 33.4 8.7 77 20-97 81-176 (178)
123 PRK14098 glycogen synthase; Pr 93.8 0.17 3.7E-06 42.1 5.8 79 17-100 361-449 (489)
124 TIGR00421 ubiX_pad polyprenyl 93.1 1.1 2.3E-05 32.7 8.5 52 35-86 75-143 (181)
125 PRK01021 lpxB lipid-A-disaccha 93.1 0.28 6.2E-06 42.1 6.1 47 30-80 483-529 (608)
126 PRK00654 glgA glycogen synthas 92.9 0.33 7.2E-06 39.8 6.1 79 19-100 338-426 (466)
127 PRK10125 putative glycosyl tra 92.7 0.28 6.1E-06 39.7 5.4 46 19-64 287-339 (405)
128 COG0763 LpxB Lipid A disacchar 92.7 0.23 5E-06 40.3 4.8 70 28-101 257-343 (381)
129 TIGR03713 acc_sec_asp1 accesso 92.7 0.24 5.1E-06 41.7 5.1 73 18-101 409-487 (519)
130 PF03641 Lysine_decarbox: Poss 92.2 2 4.4E-05 29.4 8.5 63 20-83 38-111 (133)
131 PLN02939 transferase, transfer 91.6 0.72 1.6E-05 41.7 6.9 82 18-100 837-929 (977)
132 PF11071 DUF2872: Protein of u 91.5 1 2.2E-05 31.5 6.2 64 30-98 67-138 (141)
133 COG1817 Uncharacterized protei 91.5 1.2 2.5E-05 35.6 7.3 64 31-100 248-312 (346)
134 PF13844 Glyco_transf_41: Glyc 91.4 0.7 1.5E-05 38.6 6.4 63 19-84 343-410 (468)
135 PLN02949 transferase, transfer 91.2 0.52 1.1E-05 39.1 5.4 80 18-101 335-421 (463)
136 TIGR02400 trehalose_OtsA alpha 91.0 0.83 1.8E-05 37.8 6.4 65 27-101 347-421 (456)
137 PRK14099 glycogen synthase; Pr 90.9 0.72 1.6E-05 38.3 6.1 76 21-98 354-440 (485)
138 TIGR03646 YtoQ_fam YtoQ family 90.2 1.3 2.8E-05 31.1 5.8 64 30-98 70-141 (144)
139 TIGR02470 sucr_synth sucrose s 90.1 1.9 4.1E-05 38.3 8.1 74 18-100 619-707 (784)
140 PF05014 Nuc_deoxyrib_tr: Nucl 88.8 0.78 1.7E-05 30.3 3.9 35 30-64 56-98 (113)
141 PRK09932 glycerate kinase II; 88.3 2.1 4.6E-05 34.9 6.7 89 28-127 277-381 (381)
142 PRK10964 ADP-heptose:LPS hepto 88.3 0.72 1.6E-05 35.8 3.9 35 26-61 244-278 (322)
143 COG0438 RfaG Glycosyltransfera 87.8 1.7 3.8E-05 31.5 5.5 74 18-100 257-340 (381)
144 TIGR00725 conserved hypothetic 87.5 2.7 5.9E-05 29.8 6.2 36 30-65 86-125 (159)
145 PLN02316 synthase/transferase 87.4 2.7 5.9E-05 38.4 7.4 82 19-101 901-997 (1036)
146 cd03788 GT1_TPS Trehalose-6-Ph 87.1 1.3 2.8E-05 36.5 5.0 67 26-101 351-426 (460)
147 PLN00142 sucrose synthase 86.9 3.3 7.2E-05 36.9 7.6 62 29-99 659-729 (815)
148 PRK10017 colanic acid biosynth 86.8 4.6 0.0001 33.2 8.0 66 28-101 320-391 (426)
149 PF04230 PS_pyruv_trans: Polys 86.2 1.8 3.8E-05 31.5 4.8 36 27-63 249-284 (286)
150 TIGR02919 accessory Sec system 86.1 2.7 5.8E-05 34.8 6.2 76 18-101 328-410 (438)
151 PF06506 PrpR_N: Propionate ca 85.9 0.39 8.5E-06 34.5 1.2 30 34-64 33-62 (176)
152 PRK03372 ppnK inorganic polyph 85.0 2.5 5.3E-05 33.4 5.3 54 31-101 68-127 (306)
153 TIGR00732 dprA DNA protecting 84.9 4.8 0.0001 30.2 6.7 61 33-95 155-219 (220)
154 PRK05920 aromatic acid decarbo 84.0 4.1 9E-05 30.3 5.9 37 50-86 125-161 (204)
155 cd03789 GT1_LPS_heptosyltransf 83.8 2.4 5.2E-05 32.1 4.7 36 26-62 189-224 (279)
156 PLN02929 NADH kinase 83.8 2.7 5.8E-05 33.2 5.0 72 30-101 59-136 (301)
157 PRK04885 ppnK inorganic polyph 83.1 3.3 7.1E-05 32.0 5.2 30 34-63 34-69 (265)
158 PRK10342 glycerate kinase I; P 82.4 4.9 0.00011 32.8 6.1 66 28-99 277-358 (381)
159 PF13524 Glyco_trans_1_2: Glyc 82.3 3.4 7.4E-05 25.7 4.3 51 42-101 9-61 (92)
160 TIGR02699 archaeo_AfpA archaeo 81.9 3.5 7.6E-05 29.9 4.7 63 34-96 77-174 (174)
161 cd03793 GT1_Glycogen_synthase_ 81.6 1.9 4E-05 37.1 3.6 35 29-64 468-507 (590)
162 PRK06029 3-octaprenyl-4-hydrox 81.0 10 0.00022 27.8 6.9 52 35-86 78-146 (185)
163 PRK02155 ppnK NAD(+)/NADH kina 80.1 4.8 0.0001 31.5 5.2 33 31-63 59-95 (291)
164 COG3914 Spy Predicted O-linked 80.0 7.4 0.00016 33.5 6.6 90 28-123 501-611 (620)
165 KOG4180 Predicted kinase [Gene 80.0 0.57 1.2E-05 37.5 0.0 35 28-62 98-136 (395)
166 PRK14077 pnk inorganic polypho 79.6 4.6 9.9E-05 31.6 5.0 33 31-63 60-96 (287)
167 PRK03708 ppnK inorganic polyph 79.1 4.3 9.3E-05 31.5 4.7 30 35-64 57-89 (277)
168 PRK04539 ppnK inorganic polyph 78.8 7 0.00015 30.7 5.8 55 30-101 63-123 (296)
169 PRK10736 hypothetical protein; 78.7 13 0.00029 30.2 7.5 69 27-97 212-284 (374)
170 KOG0780 Signal recognition par 78.5 1.4 3.1E-05 36.3 1.9 53 31-84 238-298 (483)
171 TIGR02329 propionate_PrpR prop 78.1 12 0.00025 31.8 7.3 29 35-64 54-82 (526)
172 PF01075 Glyco_transf_9: Glyco 78.1 5.1 0.00011 29.5 4.7 35 26-61 174-208 (247)
173 PRK15424 propionate catabolism 77.8 12 0.00025 32.0 7.2 29 35-64 64-92 (538)
174 PRK01911 ppnK inorganic polyph 75.6 8.5 0.00019 30.1 5.5 54 31-101 60-119 (292)
175 PRK10017 colanic acid biosynth 75.0 6.6 0.00014 32.3 4.9 40 25-64 107-157 (426)
176 PRK02649 ppnK inorganic polyph 74.9 7.3 0.00016 30.7 5.0 33 31-63 64-100 (305)
177 TIGR03609 S_layer_CsaB polysac 74.4 12 0.00027 28.5 6.1 48 28-83 243-290 (298)
178 PF07429 Glyco_transf_56: 4-al 74.1 20 0.00043 29.1 7.2 64 28-99 258-330 (360)
179 TIGR02201 heptsyl_trn_III lipo 74.0 7.3 0.00016 30.4 4.8 35 26-61 251-285 (344)
180 COG2099 CobK Precorrin-6x redu 73.3 6.2 0.00013 30.5 4.1 41 24-64 182-231 (257)
181 TIGR00045 glycerate kinase. Th 73.2 6.5 0.00014 32.0 4.4 66 28-99 276-357 (375)
182 PRK07313 phosphopantothenoylcy 72.3 14 0.00031 26.8 5.6 55 32-86 74-147 (182)
183 PRK10422 lipopolysaccharide co 71.7 8.9 0.00019 30.1 4.8 35 26-61 253-287 (352)
184 PRK14075 pnk inorganic polypho 70.7 12 0.00026 28.6 5.2 30 34-63 40-70 (256)
185 COG5039 Exopolysaccharide bios 70.4 27 0.00059 27.9 7.1 72 27-101 260-332 (339)
186 TIGR02113 coaC_strep phosphopa 70.1 17 0.00036 26.3 5.6 54 33-86 74-146 (177)
187 PRK03501 ppnK inorganic polyph 70.1 14 0.0003 28.6 5.4 30 34-63 38-72 (264)
188 TIGR02195 heptsyl_trn_II lipop 69.9 10 0.00023 29.4 4.8 35 26-61 242-276 (334)
189 TIGR02193 heptsyl_trn_I lipopo 69.6 11 0.00023 29.1 4.8 36 26-62 245-280 (319)
190 PRK03378 ppnK inorganic polyph 69.3 13 0.00028 29.1 5.2 57 30-101 58-118 (292)
191 PRK01185 ppnK inorganic polyph 69.2 13 0.00029 28.7 5.2 52 35-101 52-104 (271)
192 PLN03063 alpha,alpha-trehalose 69.0 11 0.00024 33.5 5.3 66 27-101 367-442 (797)
193 cd07766 DHQ_Fe-ADH Dehydroquin 68.5 6.3 0.00014 30.8 3.3 29 35-64 78-113 (332)
194 PRK02231 ppnK inorganic polyph 67.2 20 0.00043 27.8 5.8 34 30-63 37-74 (272)
195 PLN02935 Bifunctional NADH kin 66.6 15 0.00033 31.1 5.4 52 33-101 260-317 (508)
196 cd08177 MAR Maleylacetate redu 66.6 11 0.00024 29.8 4.3 30 34-64 76-110 (337)
197 PRK01231 ppnK inorganic polyph 66.2 15 0.00033 28.7 5.0 54 33-101 60-117 (295)
198 cd08171 GlyDH-like2 Glycerol d 66.1 7.4 0.00016 30.8 3.3 30 34-64 77-111 (345)
199 PLN02727 NAD kinase 65.5 14 0.00031 33.6 5.2 56 29-101 737-798 (986)
200 cd08549 G1PDH_related Glycerol 65.1 8 0.00017 30.5 3.3 30 34-64 79-113 (332)
201 PRK04761 ppnK inorganic polyph 64.9 8.7 0.00019 29.4 3.3 31 34-64 24-58 (246)
202 PF10093 DUF2331: Uncharacteri 64.9 26 0.00055 28.6 6.1 65 17-82 243-309 (374)
203 PRK02797 4-alpha-L-fucosyltran 64.7 62 0.0013 25.9 8.1 64 23-95 215-287 (322)
204 PRK10916 ADP-heptose:LPS hepto 63.7 16 0.00034 28.6 4.8 35 26-61 252-286 (348)
205 PF07085 DRTGG: DRTGG domain; 62.7 38 0.00083 21.8 5.9 77 19-98 23-101 (105)
206 PF15024 Glyco_transf_18: Glyc 62.7 24 0.00051 30.4 5.8 94 27-123 333-453 (559)
207 COG0859 RfaF ADP-heptose:LPS h 62.6 15 0.00033 28.8 4.5 35 26-61 242-276 (334)
208 PF01113 DapB_N: Dihydrodipico 62.2 20 0.00043 24.0 4.5 53 27-81 59-115 (124)
209 PRK00048 dihydrodipicolinate r 62.1 67 0.0015 24.3 9.7 96 26-124 51-170 (257)
210 PRK09423 gldA glycerol dehydro 61.7 10 0.00022 30.3 3.4 29 35-64 84-117 (366)
211 TIGR00661 MJ1255 conserved hyp 61.4 12 0.00026 29.0 3.7 29 35-63 93-121 (321)
212 COG0163 UbiX 3-polyprenyl-4-hy 61.2 37 0.00081 25.1 5.9 49 38-86 84-148 (191)
213 cd08550 GlyDH-like Glycerol_de 60.7 11 0.00023 29.9 3.3 30 34-64 76-110 (349)
214 cd08170 GlyDH Glycerol dehydro 60.7 9.4 0.0002 30.2 3.0 29 35-64 77-110 (351)
215 COG0703 AroK Shikimate kinase 60.1 61 0.0013 23.5 6.8 17 29-45 65-81 (172)
216 PRK02645 ppnK inorganic polyph 59.8 12 0.00027 29.3 3.5 30 34-63 56-89 (305)
217 cd08181 PPD-like 1,3-propanedi 59.6 11 0.00025 29.9 3.3 29 35-64 83-133 (357)
218 COG0541 Ffh Signal recognition 58.7 19 0.0004 30.1 4.4 55 29-84 235-297 (451)
219 cd08175 G1PDH Glycerol-1-phosp 58.3 18 0.00039 28.6 4.2 29 35-64 80-113 (348)
220 cd08173 Gro1PDH Sn-glycerol-1- 57.8 18 0.00039 28.5 4.1 29 35-64 78-111 (339)
221 PRK00843 egsA NAD(P)-dependent 57.7 19 0.0004 28.6 4.2 29 35-64 87-120 (350)
222 PRK12446 undecaprenyldiphospho 57.5 15 0.00033 29.1 3.7 29 35-63 91-122 (352)
223 PRK10586 putative oxidoreducta 57.0 15 0.00032 29.5 3.6 29 35-64 86-119 (362)
224 COG1052 LdhA Lactate dehydroge 56.7 25 0.00053 28.0 4.7 23 23-46 189-211 (324)
225 PF02593 dTMP_synthase: Thymid 56.2 84 0.0018 23.7 7.2 53 33-85 49-106 (217)
226 PF13685 Fe-ADH_2: Iron-contai 55.6 19 0.0004 27.6 3.8 34 35-69 75-113 (250)
227 PRK11914 diacylglycerol kinase 55.1 31 0.00067 26.6 5.0 29 36-64 65-97 (306)
228 PLN02496 probable phosphopanto 54.3 56 0.0012 24.5 6.0 57 30-86 91-166 (209)
229 cd08191 HHD 6-hydroxyhexanoate 54.2 17 0.00036 29.3 3.4 29 35-64 79-130 (386)
230 cd08187 BDH Butanol dehydrogen 54.2 18 0.00038 29.1 3.6 29 35-64 86-137 (382)
231 COG1929 Glycerate kinase [Carb 54.2 22 0.00047 29.0 4.0 68 27-100 276-359 (378)
232 PF02882 THF_DHG_CYH_C: Tetrah 54.1 13 0.00029 26.5 2.6 38 24-61 68-105 (160)
233 cd08174 G1PDH-like Glycerol-1- 53.5 16 0.00036 28.6 3.3 29 35-64 75-108 (331)
234 PRK14076 pnk inorganic polypho 53.3 31 0.00066 29.5 5.0 53 34-101 347-403 (569)
235 TIGR02990 ectoine_eutA ectoine 52.8 92 0.002 23.6 7.1 76 47-125 110-207 (239)
236 cd08176 LPO Lactadehyde:propan 52.4 18 0.00038 29.0 3.3 29 35-64 85-136 (377)
237 PRK13054 lipid kinase; Reviewe 52.4 36 0.00079 26.2 5.0 30 35-64 56-93 (300)
238 TIGR03837 efp_adjacent_2 conse 51.8 54 0.0012 26.8 5.9 65 18-83 242-308 (371)
239 PF02445 NadA: Quinolinate syn 51.8 28 0.00061 27.5 4.2 47 17-63 98-144 (296)
240 PRK05579 bifunctional phosphop 51.4 50 0.0011 27.0 5.8 70 31-100 78-181 (399)
241 cd07035 TPP_PYR_POX_like Pyrim 51.4 75 0.0016 21.6 6.8 64 38-103 62-141 (155)
242 PRK05632 phosphate acetyltrans 51.1 1.4E+02 0.0031 26.1 8.8 69 26-94 236-310 (684)
243 COG2327 WcaK Polysaccharide py 50.8 75 0.0016 26.1 6.6 65 28-100 278-348 (385)
244 smart00046 DAGKc Diacylglycero 50.5 17 0.00038 24.3 2.6 31 34-64 48-87 (124)
245 TIGR02638 lactal_redase lactal 50.4 18 0.00038 29.1 3.0 29 35-64 86-139 (379)
246 PRK13059 putative lipid kinase 50.3 16 0.00035 28.2 2.7 30 35-64 56-91 (295)
247 COG4080 SpoU rRNA Methylase fa 50.3 22 0.00047 25.1 3.0 27 37-63 30-64 (147)
248 PRK00561 ppnK inorganic polyph 50.2 29 0.00062 26.8 4.0 30 34-63 32-65 (259)
249 cd08180 PDD 1,3-propanediol de 50.0 19 0.00042 28.2 3.2 29 35-64 78-118 (332)
250 cd08169 DHQ-like Dehydroquinat 49.9 32 0.0007 27.3 4.4 29 35-64 83-118 (344)
251 PRK13057 putative lipid kinase 49.3 27 0.00059 26.7 3.8 31 34-64 49-83 (287)
252 cd07039 TPP_PYR_POX Pyrimidine 48.9 91 0.002 21.9 6.7 81 20-102 39-144 (164)
253 PF08937 DUF1863: MTH538 TIR-l 48.9 22 0.00048 23.9 3.0 38 28-65 63-109 (130)
254 PRK13463 phosphatase PhoE; Pro 48.8 16 0.00036 26.4 2.4 21 38-58 147-167 (203)
255 COG0379 NadA Quinolinate synth 48.7 12 0.00026 29.9 1.7 47 17-63 121-167 (324)
256 cd08193 HVD 5-hydroxyvalerate 48.3 22 0.00048 28.4 3.3 29 35-64 83-134 (376)
257 PF10087 DUF2325: Uncharacteri 48.2 23 0.0005 22.6 2.8 36 29-64 42-84 (97)
258 TIGR03848 MSMEG_4193 probable 48.1 20 0.00043 25.8 2.8 21 38-58 148-168 (204)
259 cd08182 HEPD Hydroxyethylphosp 47.6 34 0.00075 27.2 4.3 35 29-64 69-132 (367)
260 COG3613 Nucleoside 2-deoxyribo 47.4 28 0.0006 25.4 3.3 35 30-64 63-107 (172)
261 cd08184 Fe-ADH3 Iron-containin 47.4 37 0.0008 27.1 4.4 29 35-64 81-132 (347)
262 PRK14116 gpmA phosphoglyceromu 47.4 16 0.00035 27.2 2.2 20 38-57 178-197 (228)
263 PRK10624 L-1,2-propanediol oxi 46.9 25 0.00054 28.3 3.4 30 35-65 87-141 (382)
264 cd08194 Fe-ADH6 Iron-containin 46.9 24 0.00052 28.2 3.3 30 34-64 79-131 (375)
265 PRK00861 putative lipid kinase 46.8 55 0.0012 25.1 5.2 29 36-64 58-90 (300)
266 cd08551 Fe-ADH iron-containing 46.4 24 0.00053 28.0 3.2 30 35-65 80-132 (370)
267 cd08183 Fe-ADH2 Iron-containin 46.0 24 0.00053 28.2 3.2 29 35-64 75-130 (374)
268 PF00994 MoCF_biosynth: Probab 45.9 21 0.00046 24.4 2.5 18 29-46 50-67 (144)
269 cd08188 Fe-ADH4 Iron-containin 45.5 25 0.00055 28.2 3.2 29 35-64 85-136 (377)
270 PRK14119 gpmA phosphoglyceromu 45.3 20 0.00043 26.6 2.4 20 38-57 178-197 (228)
271 TIGR03405 Phn_Fe-ADH phosphona 45.1 39 0.00085 26.9 4.3 16 36-52 81-96 (355)
272 TIGR02483 PFK_mixed phosphofru 44.8 76 0.0016 25.2 5.8 43 42-87 173-220 (324)
273 cd00758 MoCF_BD MoCF_BD: molyb 44.7 17 0.00036 24.7 1.8 18 29-46 52-69 (133)
274 PRK14180 bifunctional 5,10-met 43.9 24 0.00052 27.7 2.7 28 23-50 189-216 (282)
275 PRK13337 putative lipid kinase 43.8 55 0.0012 25.3 4.8 29 36-64 58-92 (304)
276 PRK15004 alpha-ribazole phosph 43.5 21 0.00045 25.7 2.2 22 37-58 144-165 (199)
277 KOG4626 O-linked N-acetylgluco 43.5 9.4 0.0002 33.6 0.5 51 31-84 831-884 (966)
278 TIGR03162 ribazole_cobC alpha- 43.4 22 0.00047 24.8 2.3 20 38-57 141-160 (177)
279 TIGR00732 dprA DNA protecting 43.3 1.1E+02 0.0025 22.7 6.3 60 27-86 64-131 (220)
280 PRK13982 bifunctional SbtC-lik 43.2 1.1E+02 0.0024 25.8 6.7 70 31-100 142-246 (475)
281 PRK14118 gpmA phosphoglyceromu 43.0 21 0.00046 26.5 2.3 21 38-58 177-197 (227)
282 cd08172 GlyDH-like1 Glycerol d 42.8 32 0.00069 27.2 3.4 29 35-64 76-109 (347)
283 PF01513 NAD_kinase: ATP-NAD k 42.7 32 0.0007 26.4 3.3 35 30-64 71-109 (285)
284 COG4394 Uncharacterized protei 42.3 1.6E+02 0.0034 23.7 7.0 48 16-64 236-285 (370)
285 PRK00002 aroB 3-dehydroquinate 42.3 44 0.00096 26.6 4.1 28 36-64 93-127 (358)
286 TIGR01357 aroB 3-dehydroquinat 42.2 31 0.00068 27.2 3.3 27 37-64 83-116 (344)
287 PF04230 PS_pyruv_trans: Polys 42.1 38 0.00082 24.3 3.5 47 35-81 63-127 (286)
288 PRK15454 ethanol dehydrogenase 42.1 33 0.00071 27.9 3.4 30 34-64 105-157 (395)
289 PF00117 GATase: Glutamine ami 41.8 30 0.00064 24.5 2.8 53 16-73 20-85 (192)
290 PRK14117 gpmA phosphoglyceromu 41.7 23 0.0005 26.4 2.3 20 38-57 178-197 (230)
291 PF00389 2-Hacid_dh: D-isomer 41.5 1E+02 0.0023 20.4 5.8 66 19-89 20-90 (133)
292 cd08195 DHQS Dehydroquinate sy 41.0 30 0.00065 27.3 3.0 27 37-64 87-120 (345)
293 cd08185 Fe-ADH1 Iron-containin 41.0 46 0.001 26.6 4.1 17 35-52 83-99 (380)
294 COG1618 Predicted nucleotide k 40.5 1.3E+02 0.0029 22.0 5.9 60 27-90 92-162 (179)
295 PF02606 LpxK: Tetraacyldisacc 40.5 71 0.0015 25.4 5.0 85 1-99 158-249 (326)
296 TIGR03609 S_layer_CsaB polysac 40.0 77 0.0017 24.1 5.1 36 28-64 57-108 (298)
297 COG0406 phoE Broad specificity 39.9 44 0.00095 24.0 3.5 31 29-59 136-170 (208)
298 COG0371 GldA Glycerol dehydrog 39.9 45 0.00098 27.1 3.8 30 35-65 84-118 (360)
299 PRK08322 acetolactate synthase 39.7 1.7E+02 0.0036 24.5 7.3 72 29-100 53-142 (547)
300 PTZ00122 phosphoglycerate muta 39.7 30 0.00065 27.1 2.8 20 38-57 236-255 (299)
301 PRK14183 bifunctional 5,10-met 39.6 28 0.00061 27.3 2.5 38 24-61 189-226 (281)
302 PF02571 CbiJ: Precorrin-6x re 39.5 58 0.0013 24.8 4.2 41 24-64 180-228 (249)
303 PRK14021 bifunctional shikimat 39.0 34 0.00073 29.1 3.1 29 35-64 269-304 (542)
304 TIGR00715 precor6x_red precorr 39.0 61 0.0013 24.8 4.3 41 24-64 183-232 (256)
305 PRK07979 acetolactate synthase 38.9 1.1E+02 0.0025 25.8 6.3 34 29-62 57-100 (574)
306 TIGR00177 molyb_syn molybdenum 38.9 22 0.00048 24.5 1.7 19 29-47 60-78 (144)
307 PRK14187 bifunctional 5,10-met 38.7 30 0.00064 27.3 2.6 38 24-61 192-229 (294)
308 PRK09860 putative alcohol dehy 38.4 40 0.00087 27.2 3.4 30 34-64 87-139 (383)
309 PRK03482 phosphoglycerate muta 38.1 31 0.00067 25.1 2.5 21 38-58 146-166 (215)
310 cd01170 THZ_kinase 4-methyl-5- 38.0 1.7E+02 0.0037 21.9 7.1 43 22-64 36-88 (242)
311 cd05212 NAD_bind_m-THF_DH_Cycl 38.0 34 0.00074 23.8 2.5 46 18-63 53-99 (140)
312 PRK14166 bifunctional 5,10-met 37.1 33 0.00073 26.8 2.6 28 23-50 188-215 (282)
313 COG0111 SerA Phosphoglycerate 36.9 24 0.00051 28.1 1.8 18 26-43 188-205 (324)
314 cd07037 TPP_PYR_MenD Pyrimidin 36.8 90 0.0019 22.1 4.6 44 20-63 36-94 (162)
315 cd01080 NAD_bind_m-THF_DH_Cycl 36.5 54 0.0012 23.4 3.5 44 18-61 69-113 (168)
316 PRK13055 putative lipid kinase 36.4 40 0.00087 26.5 3.0 29 36-64 60-94 (334)
317 COG1887 TagB Putative glycosyl 36.3 60 0.0013 26.4 4.1 69 27-100 278-351 (388)
318 cd00763 Bacterial_PFK Phosphof 36.3 2.1E+02 0.0045 22.7 7.0 55 42-99 171-236 (317)
319 cd00363 PFK Phosphofructokinas 36.0 1.1E+02 0.0025 24.3 5.5 45 42-86 177-226 (338)
320 PRK01295 phosphoglyceromutase; 36.0 31 0.00067 25.2 2.2 21 38-58 154-174 (206)
321 PRK14182 bifunctional 5,10-met 35.8 35 0.00076 26.7 2.5 24 25-48 190-213 (282)
322 TIGR00147 lipid kinase, YegS/R 35.7 39 0.00084 25.8 2.8 29 36-64 58-92 (293)
323 smart00852 MoCF_biosynth Proba 35.7 27 0.00059 23.5 1.8 18 29-46 51-68 (135)
324 PRK06882 acetolactate synthase 35.7 1.9E+02 0.0042 24.3 7.2 34 29-62 57-100 (574)
325 PRK08057 cobalt-precorrin-6x r 35.6 90 0.002 23.8 4.7 41 24-64 176-224 (248)
326 cd08198 DHQS-like2 Dehydroquin 35.4 48 0.001 26.9 3.3 27 37-64 101-134 (369)
327 PLN00125 Succinyl-CoA ligase [ 35.3 1.8E+02 0.0039 22.9 6.5 52 49-101 227-295 (300)
328 PRK14071 6-phosphofructokinase 35.3 1.2E+02 0.0026 24.5 5.6 23 42-64 187-209 (360)
329 cd00764 Eukaryotic_PFK Phospho 35.3 1.6E+02 0.0035 26.4 6.7 39 42-80 199-237 (762)
330 cd01743 GATase1_Anthranilate_S 35.2 78 0.0017 22.4 4.2 55 16-75 21-86 (184)
331 cd05566 PTS_IIB_galactitol PTS 35.1 63 0.0014 19.9 3.3 45 28-79 41-86 (89)
332 PRK14191 bifunctional 5,10-met 34.8 47 0.001 26.1 3.1 31 18-48 182-213 (285)
333 PLN02897 tetrahydrofolate dehy 34.7 41 0.00088 27.2 2.8 40 22-61 244-283 (345)
334 PRK07064 hypothetical protein; 34.6 1.6E+02 0.0034 24.6 6.5 34 29-62 56-99 (544)
335 COG1663 LpxK Tetraacyldisaccha 34.5 36 0.00077 27.4 2.4 32 1-46 171-202 (336)
336 TIGR02852 spore_dpaB dipicolin 34.5 1.1E+02 0.0023 22.5 4.8 51 35-86 79-148 (187)
337 cd08192 Fe-ADH7 Iron-containin 34.4 46 0.001 26.5 3.1 18 34-52 80-97 (370)
338 COG1445 FrwB Phosphotransferas 34.3 52 0.0011 22.6 2.9 34 30-64 51-85 (122)
339 PRK07524 hypothetical protein; 34.1 1.6E+02 0.0034 24.7 6.3 34 29-62 54-97 (535)
340 PRK14170 bifunctional 5,10-met 34.1 40 0.00086 26.5 2.6 38 24-61 189-226 (284)
341 PRK14173 bifunctional 5,10-met 34.1 39 0.00085 26.5 2.6 39 23-61 186-224 (287)
342 cd08197 DOIS 2-deoxy-scyllo-in 34.0 52 0.0011 26.4 3.4 26 38-64 87-119 (355)
343 COG3199 Predicted inorganic po 33.9 62 0.0013 26.3 3.7 36 29-64 92-132 (355)
344 PRK06112 acetolactate synthase 33.7 46 0.00099 28.2 3.1 34 29-62 64-107 (578)
345 cd08186 Fe-ADH8 Iron-containin 33.7 50 0.0011 26.5 3.2 29 35-64 84-136 (383)
346 PLN03139 formate dehydrogenase 33.6 92 0.002 25.4 4.7 56 26-83 246-310 (386)
347 PTZ00123 phosphoglycerate muta 33.5 37 0.0008 25.4 2.3 20 38-57 165-184 (236)
348 cd00885 cinA Competence-damage 33.4 29 0.00063 24.8 1.7 34 29-62 52-92 (170)
349 PRK08535 translation initiatio 33.2 1.7E+02 0.0037 23.0 6.1 55 31-86 116-175 (310)
350 PRK13302 putative L-aspartate 33.1 2.2E+02 0.0048 21.7 6.6 60 26-87 58-121 (271)
351 PRK01112 phosphoglyceromutase; 33.1 38 0.00082 25.3 2.3 22 37-58 176-197 (228)
352 PF00224 PK: Pyruvate kinase, 33.1 54 0.0012 26.2 3.3 36 26-61 230-280 (348)
353 PRK14181 bifunctional 5,10-met 33.1 42 0.00092 26.3 2.6 37 25-61 190-226 (287)
354 PRK14185 bifunctional 5,10-met 32.8 43 0.00094 26.4 2.6 38 24-61 193-230 (293)
355 PRK14193 bifunctional 5,10-met 32.8 43 0.00094 26.2 2.6 26 25-50 193-218 (284)
356 PRK00771 signal recognition pa 32.8 84 0.0018 26.1 4.4 48 37-84 236-290 (437)
357 PF04577 DUF563: Protein of un 32.7 64 0.0014 22.8 3.4 30 25-56 143-172 (206)
358 PRK14186 bifunctional 5,10-met 32.6 42 0.00091 26.5 2.5 38 24-61 190-227 (297)
359 PRK08335 translation initiatio 32.5 2.1E+02 0.0045 22.3 6.4 55 30-86 104-164 (275)
360 PRK10116 universal stress prot 32.1 1.4E+02 0.0031 19.5 4.9 36 29-64 94-140 (142)
361 PRK09375 quinolinate synthetas 32.0 1.2E+02 0.0026 24.2 5.0 46 18-63 120-165 (319)
362 PRK14168 bifunctional 5,10-met 31.9 46 0.001 26.3 2.7 38 24-61 197-234 (297)
363 PRK08273 thiamine pyrophosphat 31.9 1.9E+02 0.004 24.7 6.5 71 29-99 57-146 (597)
364 PRK11269 glyoxylate carboligas 31.7 3.2E+02 0.007 23.2 7.9 71 29-100 57-147 (591)
365 PRK06203 aroB 3-dehydroquinate 31.7 50 0.0011 26.9 2.9 28 36-64 112-146 (389)
366 COG0413 PanB Ketopantoate hydr 31.5 2.5E+02 0.0055 21.9 6.6 74 27-100 97-195 (268)
367 PRK12361 hypothetical protein; 31.4 84 0.0018 26.5 4.3 30 35-64 297-330 (547)
368 PTZ00066 pyruvate kinase; Prov 31.4 76 0.0017 27.0 4.0 35 26-60 264-313 (513)
369 COG1712 Predicted dinucleotide 31.4 2.5E+02 0.0054 21.7 6.8 59 27-85 52-114 (255)
370 PF03446 NAD_binding_2: NAD bi 31.3 1.8E+02 0.0039 20.1 7.0 59 28-86 50-116 (163)
371 PF12000 Glyco_trans_4_3: Gkyc 31.3 24 0.00052 25.5 0.9 26 37-62 68-95 (171)
372 PRK14177 bifunctional 5,10-met 31.3 46 0.001 26.1 2.6 25 25-49 192-216 (284)
373 cd08179 NADPH_BDH NADPH-depend 31.2 52 0.0011 26.3 2.9 17 35-52 81-97 (375)
374 PRK06276 acetolactate synthase 31.2 2.1E+02 0.0046 24.3 6.7 34 29-62 53-96 (586)
375 PTZ00408 NAD-dependent deacety 31.1 1.5E+02 0.0033 22.4 5.4 46 16-61 149-205 (242)
376 PRK14169 bifunctional 5,10-met 30.9 48 0.001 26.0 2.6 25 24-48 188-212 (282)
377 PRK14190 bifunctional 5,10-met 30.9 59 0.0013 25.5 3.1 23 24-46 190-212 (284)
378 PLN02516 methylenetetrahydrofo 30.9 48 0.001 26.2 2.6 23 24-46 199-221 (299)
379 PRK14072 6-phosphofructokinase 30.8 1.1E+02 0.0023 25.3 4.7 45 42-87 191-242 (416)
380 PRK14188 bifunctional 5,10-met 30.8 76 0.0016 25.0 3.7 45 17-61 182-227 (296)
381 cd08178 AAD_C C-terminal alcoh 30.5 54 0.0012 26.5 3.0 17 35-52 78-94 (398)
382 cd01079 NAD_bind_m-THF_DH NAD 30.4 43 0.00093 24.9 2.1 20 29-48 120-139 (197)
383 COG2081 Predicted flavoprotein 30.4 63 0.0014 26.7 3.2 90 33-123 1-121 (408)
384 TIGR01258 pgm_1 phosphoglycera 30.2 44 0.00094 25.2 2.2 21 37-57 176-196 (245)
385 PF04007 DUF354: Protein of un 30.2 1.1E+02 0.0025 24.4 4.7 36 29-64 75-112 (335)
386 PRK14194 bifunctional 5,10-met 30.1 77 0.0017 25.1 3.6 46 17-62 183-229 (301)
387 PRK14167 bifunctional 5,10-met 30.0 49 0.0011 26.1 2.5 38 24-61 193-230 (297)
388 PRK13462 acid phosphatase; Pro 30.0 53 0.0012 23.9 2.6 20 38-57 143-162 (203)
389 PF04558 tRNA_synt_1c_R1: Glut 29.9 51 0.0011 23.6 2.4 28 74-101 104-131 (164)
390 COG0614 FepB ABC-type Fe3+-hyd 29.8 1E+02 0.0022 23.2 4.2 40 25-64 104-146 (319)
391 TIGR03702 lip_kinase_YegS lipi 29.7 1.2E+02 0.0026 23.3 4.6 30 35-64 52-89 (293)
392 PF09547 Spore_IV_A: Stage IV 29.7 2.5E+02 0.0054 23.8 6.6 55 46-100 171-233 (492)
393 PLN02834 3-dehydroquinate synt 29.5 69 0.0015 26.5 3.4 27 37-64 165-198 (433)
394 PRK06739 pyruvate kinase; Vali 29.5 92 0.002 25.2 4.0 36 26-61 220-270 (352)
395 PRK06895 putative anthranilate 29.3 1.5E+02 0.0033 21.1 4.9 53 16-73 24-85 (190)
396 PRK05637 anthranilate synthase 29.1 1.5E+02 0.0033 21.7 5.0 55 16-75 24-88 (208)
397 PRK06774 para-aminobenzoate sy 29.0 1.6E+02 0.0035 21.0 5.0 56 16-76 22-88 (191)
398 PRK14115 gpmA phosphoglyceromu 29.0 50 0.0011 24.9 2.4 21 38-58 177-197 (247)
399 PF12496 BNIP2: Bcl2-/adenovir 29.0 24 0.00051 24.4 0.5 15 31-45 109-123 (127)
400 TIGR01088 aroQ 3-dehydroquinat 28.9 2.1E+02 0.0046 20.2 6.1 49 16-64 40-100 (141)
401 cd08189 Fe-ADH5 Iron-containin 28.9 66 0.0014 25.7 3.2 30 34-64 82-135 (374)
402 PRK07586 hypothetical protein; 28.8 3.4E+02 0.0073 22.5 7.5 72 29-100 54-143 (514)
403 PRK14172 bifunctional 5,10-met 28.8 55 0.0012 25.6 2.6 25 25-49 191-215 (278)
404 cd00886 MogA_MoaB MogA_MoaB fa 28.7 40 0.00087 23.4 1.7 12 35-46 61-72 (152)
405 PF02481 DNA_processg_A: DNA r 28.7 1.2E+02 0.0025 22.5 4.3 39 45-85 171-209 (212)
406 PRK14120 gpmA phosphoglyceromu 28.7 48 0.001 25.2 2.2 20 38-57 179-198 (249)
407 TIGR00853 pts-lac PTS system, 28.6 1.6E+02 0.0035 18.8 5.2 48 16-63 30-83 (95)
408 PF04816 DUF633: Family of unk 28.3 2E+02 0.0043 21.2 5.4 45 37-86 69-120 (205)
409 PRK15138 aldehyde reductase; P 28.2 1.1E+02 0.0025 24.6 4.5 17 35-52 85-101 (387)
410 PRK14171 bifunctional 5,10-met 28.1 55 0.0012 25.7 2.5 26 24-49 191-216 (288)
411 PRK09982 universal stress prot 28.0 95 0.0021 20.8 3.5 8 55-62 131-138 (142)
412 PRK08334 translation initiatio 28.0 1.8E+02 0.0039 23.6 5.5 55 30-86 155-223 (356)
413 PRK01215 competence damage-ind 27.9 58 0.0013 25.1 2.6 33 29-61 56-95 (264)
414 PRK15118 universal stress glob 27.9 1E+02 0.0023 20.3 3.6 11 54-64 130-140 (144)
415 PF05693 Glycogen_syn: Glycoge 27.9 1E+02 0.0023 27.0 4.3 36 28-64 462-502 (633)
416 PRK05395 3-dehydroquinate dehy 27.8 2.2E+02 0.0048 20.2 5.3 49 16-64 42-102 (146)
417 KOG0853 Glycosyltransferase [C 27.7 41 0.00089 28.5 1.8 35 30-65 360-399 (495)
418 PRK10792 bifunctional 5,10-met 27.7 70 0.0015 25.1 3.0 27 23-49 190-216 (285)
419 PRK08617 acetolactate synthase 27.7 2.3E+02 0.005 23.8 6.3 70 29-100 57-146 (552)
420 COG3848 Phosphohistidine swive 27.6 50 0.0011 22.2 1.8 45 17-61 33-80 (111)
421 cd08199 EEVS 2-epi-5-epi-valio 27.4 1.3E+02 0.0029 24.0 4.7 27 37-64 90-123 (354)
422 PRK12474 hypothetical protein; 27.3 3.3E+02 0.0071 22.7 7.2 71 29-100 58-147 (518)
423 COG0496 SurE Predicted acid ph 27.2 1.2E+02 0.0027 23.3 4.2 36 29-64 75-126 (252)
424 PRK15469 ghrA bifunctional gly 26.9 2.3E+02 0.005 22.2 5.9 55 27-83 182-245 (312)
425 PRK14184 bifunctional 5,10-met 26.8 77 0.0017 24.9 3.1 20 26-45 195-214 (286)
426 TIGR00511 ribulose_e2b2 ribose 26.8 3E+02 0.0065 21.5 6.5 54 31-86 111-170 (301)
427 TIGR00682 lpxK tetraacyldisacc 26.7 95 0.0021 24.5 3.6 29 2-44 152-180 (311)
428 PF03435 Saccharop_dh: Sacchar 26.6 1.6E+02 0.0034 23.4 5.0 57 28-87 60-120 (386)
429 PRK08266 hypothetical protein; 26.6 3E+02 0.0065 23.0 6.8 43 20-62 44-101 (542)
430 PRK06372 translation initiatio 26.6 1.8E+02 0.0039 22.4 5.1 49 36-86 87-138 (253)
431 PRK14175 bifunctional 5,10-met 26.6 79 0.0017 24.8 3.1 23 26-48 192-214 (286)
432 PRK14189 bifunctional 5,10-met 26.4 67 0.0014 25.2 2.7 23 24-46 190-212 (285)
433 cd03143 A4_beta-galactosidase_ 26.4 1.3E+02 0.0027 20.5 3.9 34 54-87 52-85 (154)
434 cd01408 SIRT1 SIRT1: Eukaryoti 26.3 85 0.0018 23.6 3.2 46 16-61 150-207 (235)
435 TIGR02478 6PF1K_euk 6-phosphof 26.2 2.2E+02 0.0047 25.5 6.0 39 42-80 196-234 (745)
436 PF11248 DUF3046: Protein of u 26.2 28 0.00061 21.1 0.4 22 36-57 24-45 (63)
437 cd05565 PTS_IIB_lactose PTS_II 26.2 1.9E+02 0.0042 18.8 5.1 48 16-63 27-80 (99)
438 PF13607 Succ_CoA_lig: Succiny 26.1 1.4E+02 0.003 20.6 4.0 29 69-97 108-136 (138)
439 PRK14174 bifunctional 5,10-met 26.1 79 0.0017 24.9 3.1 20 26-45 197-216 (295)
440 PRK14176 bifunctional 5,10-met 26.1 74 0.0016 25.0 2.9 21 25-45 197-217 (287)
441 PRK03202 6-phosphofructokinase 25.8 3.4E+02 0.0074 21.5 7.2 57 42-99 172-237 (320)
442 PF08532 Glyco_hydro_42M: Beta 25.5 87 0.0019 22.8 3.1 35 53-87 55-89 (207)
443 PRK10867 signal recognition pa 25.4 1.3E+02 0.0029 24.9 4.4 48 36-84 243-298 (433)
444 PRK05800 cobU adenosylcobinami 25.3 2.3E+02 0.005 20.0 5.2 58 41-98 10-72 (170)
445 PLN02616 tetrahydrofolate dehy 25.3 68 0.0015 26.2 2.6 37 25-61 264-300 (364)
446 TIGR03457 sulphoacet_xsc sulfo 25.2 2.2E+02 0.0048 24.1 5.8 34 29-62 54-97 (579)
447 TIGR02667 moaB_proteo molybden 25.0 80 0.0017 22.3 2.7 12 35-46 63-74 (163)
448 cd01301 rDP_like renal dipepti 25.0 3.4E+02 0.0074 21.3 6.5 73 24-99 154-250 (309)
449 cd07034 TPP_PYR_PFOR_IOR-alpha 24.8 2.3E+02 0.005 19.2 6.7 54 47-101 82-145 (160)
450 TIGR01425 SRP54_euk signal rec 24.8 97 0.0021 25.7 3.5 41 43-84 255-297 (429)
451 COG1570 XseA Exonuclease VII, 24.6 74 0.0016 26.6 2.7 26 28-54 180-212 (440)
452 KOG0025 Zn2+-binding dehydroge 24.3 2.1E+02 0.0046 23.0 5.1 59 33-94 158-221 (354)
453 PRK09124 pyruvate dehydrogenas 24.2 2.2E+02 0.0048 24.1 5.6 34 29-62 56-99 (574)
454 PRK14178 bifunctional 5,10-met 24.0 99 0.0021 24.2 3.2 19 26-44 186-204 (279)
455 TIGR02482 PFKA_ATP 6-phosphofr 24.0 1.2E+02 0.0026 23.9 3.7 30 35-64 91-124 (301)
456 COG0061 nadF NAD kinase [Coenz 24.0 97 0.0021 23.9 3.2 31 34-64 54-88 (281)
457 PF02244 Propep_M14: Carboxype 23.9 1.7E+02 0.0036 17.3 3.9 40 53-97 31-71 (74)
458 PLN02470 acetolactate synthase 23.8 2.6E+02 0.0056 23.7 6.0 34 29-62 66-109 (585)
459 PRK14501 putative bifunctional 23.8 27 0.00059 30.5 0.1 66 27-101 353-427 (726)
460 PF08599 Nbs1_C: DNA damage re 23.6 8.4 0.00018 23.4 -2.2 24 28-51 17-40 (65)
461 PRK08979 acetolactate synthase 23.6 2.9E+02 0.0062 23.4 6.2 34 29-62 57-100 (572)
462 CHL00101 trpG anthranilate syn 23.2 2.7E+02 0.0059 19.8 5.3 55 16-75 22-87 (190)
463 COG1058 CinA Predicted nucleot 23.2 59 0.0013 25.1 1.8 47 16-62 33-94 (255)
464 CHL00188 hisH imidazole glycer 23.1 1.9E+02 0.004 21.4 4.5 47 17-73 25-87 (210)
465 cd01972 Nitrogenase_VnfE_like 23.1 1.1E+02 0.0024 24.9 3.5 35 28-62 364-400 (426)
466 cd00466 DHQase_II Dehydroquina 23.1 2.8E+02 0.006 19.5 5.6 49 16-64 40-100 (140)
467 PRK13181 hisH imidazole glycer 23.0 1.7E+02 0.0036 21.0 4.2 51 16-75 22-87 (199)
468 PF02601 Exonuc_VII_L: Exonucl 22.7 40 0.00086 26.2 0.8 15 38-53 79-93 (319)
469 PF12694 MoCo_carrier: Putativ 22.5 2.9E+02 0.0063 19.6 6.0 57 28-86 56-119 (145)
470 PF01372 Melittin: Melittin; 22.5 6.8 0.00015 19.4 -2.2 16 44-59 1-16 (26)
471 PRK13015 3-dehydroquinate dehy 22.4 2.9E+02 0.0063 19.5 5.8 49 16-64 42-102 (146)
472 cd05564 PTS_IIB_chitobiose_lic 22.3 2.2E+02 0.0048 18.1 4.8 36 28-63 39-79 (96)
473 COG1184 GCD2 Translation initi 22.1 2.1E+02 0.0046 22.7 4.7 52 31-84 115-172 (301)
474 TIGR00521 coaBC_dfp phosphopan 21.9 3.4E+02 0.0074 22.1 6.1 69 32-100 75-177 (390)
475 KOG1596 Fibrillarin and relate 21.7 2.3E+02 0.005 22.3 4.7 41 66-106 234-290 (317)
476 PRK07765 para-aminobenzoate sy 21.6 3.3E+02 0.0073 19.9 6.7 57 16-77 23-93 (214)
477 cd07067 HP_PGM_like Histidine 21.4 95 0.0021 20.7 2.5 22 36-57 101-122 (153)
478 PTZ00075 Adenosylhomocysteinas 21.4 1.8E+02 0.0038 24.7 4.4 36 28-63 302-340 (476)
479 PF03808 Glyco_tran_WecB: Glyc 21.4 3E+02 0.0065 19.3 7.3 86 31-121 1-99 (172)
480 PRK07092 benzoylformate decarb 21.3 1.2E+02 0.0025 25.4 3.4 34 29-62 63-106 (530)
481 PRK10474 putative PTS system f 21.3 80 0.0017 20.0 1.9 35 30-64 33-67 (88)
482 TIGR00959 ffh signal recogniti 21.3 1.6E+02 0.0035 24.4 4.1 47 37-84 243-297 (428)
483 COG0075 Serine-pyruvate aminot 20.9 4.8E+02 0.01 21.4 8.3 66 29-98 47-128 (383)
484 PF01902 ATP_bind_4: ATP-bindi 20.5 3.7E+02 0.008 20.0 6.1 52 48-99 51-106 (218)
485 cd01141 TroA_d Periplasmic bin 20.5 2.8E+02 0.006 19.2 4.8 37 27-63 60-100 (186)
486 PF13579 Glyco_trans_4_4: Glyc 20.4 1.9E+02 0.0042 18.5 3.8 33 30-63 124-159 (160)
487 TIGR00173 menD 2-succinyl-5-en 20.3 2.2E+02 0.0048 23.1 4.7 44 19-62 38-96 (432)
488 PF07075 DUF1343: Protein of u 20.2 58 0.0013 26.5 1.3 13 52-64 108-120 (365)
489 TIGR03254 oxalate_oxc oxalyl-C 20.1 4.5E+02 0.0098 22.1 6.7 34 29-62 55-98 (554)
490 PF01488 Shikimate_DH: Shikima 20.1 1.1E+02 0.0025 20.5 2.6 28 18-46 59-86 (135)
491 PRK03202 6-phosphofructokinase 20.0 1.7E+02 0.0036 23.3 3.8 29 36-64 94-125 (320)
492 PF13528 Glyco_trans_1_3: Glyc 20.0 1.6E+02 0.0035 22.2 3.7 30 35-64 94-123 (318)
493 PRK06707 amidase; Provisional 20.0 1.3E+02 0.0029 25.6 3.5 36 28-64 458-495 (536)
No 1
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=99.91 E-value=3.2e-24 Score=150.81 Aligned_cols=125 Identities=46% Similarity=0.755 Sum_probs=111.7
Q ss_pred CCcc-ccCCCcccCC--CCcccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHH
Q 033044 1 MGQG-TYLPAESIGE--DGLLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEE 77 (128)
Q Consensus 1 ~g~~-~~~p~~~~~~--~~~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~ 77 (128)
||+| .+.|.+...- ..+..+..|+|.++|.+.|+.||+||+|||+||++|.+..|||.|+|++...|||||.+.|++
T Consensus 43 ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~q 122 (170)
T KOG3349|consen 43 IGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQ 122 (170)
T ss_pred ecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHH
Confidence 5777 5555543100 346789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEeChHHHHHHHHhcchhcCCCCCCCChHHHHHHHHHhcCC
Q 033044 78 LADRKHLYCAHPQSLHQVIVGMDLKSLLPYQPGDATPVAKLINRFLGF 125 (128)
Q Consensus 78 l~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~i~~~i~~~~g~ 125 (128)
+++.|+.+..++..|.+.+.++...++++|++...+.+++.|.+..|+
T Consensus 123 L~~egyL~~C~ps~L~~~L~~~~~~~Lkpf~~~~~~~~~~~l~~~~~~ 170 (170)
T KOG3349|consen 123 LAEEGYLYYCTPSTLPAGLAKLDLESLKPFPPSDPENFSKFLDAVVGL 170 (170)
T ss_pred HHhcCcEEEeeccchHHHHHhhcccccccCCCCCCchHHHHHHHHhcC
Confidence 999999999999999999999988899999999999999999998875
No 2
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.88 E-value=1.2e-23 Score=149.87 Aligned_cols=101 Identities=37% Similarity=0.482 Sum_probs=78.0
Q ss_pred CccccCCCcccCCCCcccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC
Q 033044 2 GQGTYLPAESIGEDGLLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR 81 (128)
Q Consensus 2 g~~~~~p~~~~~~~~~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~ 81 (128)
|.+.+.+........+.++++++|+++|.++|+.||+||||||++|++|++++|+|+|++|++.+.++||..||..+++.
T Consensus 39 G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~ 118 (167)
T PF04101_consen 39 GKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK 118 (167)
T ss_dssp TTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc
Confidence 55544444332212347899999999999999999999999999999999999999999999977778999999999999
Q ss_pred CCEEEe-----ChHHHHHHHHhcchh
Q 033044 82 KHLYCA-----HPQSLHQVIVGMDLK 102 (128)
Q Consensus 82 g~~~~~-----~~~~l~~~i~~l~~~ 102 (128)
|+++.+ +++.|.+.|.++...
T Consensus 119 g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 119 GAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp CCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CCccccCcccCCHHHHHHHHHHHHcC
Confidence 998653 578899999988654
No 3
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=4.3e-21 Score=152.63 Aligned_cols=104 Identities=30% Similarity=0.335 Sum_probs=91.2
Q ss_pred EEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChHHHHH
Q 033044 20 VDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQSLHQ 94 (128)
Q Consensus 20 ~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~~l~~ 94 (128)
+++.+|+++|.++|++||+||||+|++|++|++++|+|+|+||++...++||+.||+.|+++|++.++ +++.|.+
T Consensus 237 ~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~ 316 (357)
T COG0707 237 VRVLPFIDDMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAE 316 (357)
T ss_pred EEEeeHHhhHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHH
Confidence 89999999999999999999999999999999999999999999988789999999999999999774 6788998
Q ss_pred HHHhcch----------hcCCCCCCCChHHHHHHHHHhc
Q 033044 95 VIVGMDL----------KSLLPYQPGDATPVAKLINRFL 123 (128)
Q Consensus 95 ~i~~l~~----------~~~~~~~~~~~~~i~~~i~~~~ 123 (128)
.|.++++ +..+...+++++.+++.+.+..
T Consensus 317 ~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~~ 355 (357)
T COG0707 317 LILRLLSNPEKLKAMAENAKKLGKPDAAERIADLLLALA 355 (357)
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 8888864 2233446678888888887653
No 4
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.75 E-value=1.1e-17 Score=132.55 Aligned_cols=103 Identities=21% Similarity=0.242 Sum_probs=84.5
Q ss_pred cEEEEeCh-hhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCC-CCchHHHHHHHHHhCCCEEEe-----ChHH
Q 033044 19 AVDCFTFS-SSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDL-MDNHQSELAEELADRKHLYCA-----HPQS 91 (128)
Q Consensus 19 ~~~v~~f~-~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~-~~~~Q~~nA~~l~~~g~~~~~-----~~~~ 91 (128)
++++++|+ ++|+++|+.||++|||||++|++|++++|+|+|++|++.+ .++||..||+++++.|++..+ +++.
T Consensus 235 ~~~~~~f~~~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~ 314 (352)
T PRK12446 235 GYRQFEYVHGELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNS 314 (352)
T ss_pred CcEEecchhhhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHH
Confidence 45778998 7899999999999999999999999999999999999754 357999999999999999764 6788
Q ss_pred HHHHHHhcchh-------cCCCCCCCChHHHHHHHHH
Q 033044 92 LHQVIVGMDLK-------SLLPYQPGDATPVAKLINR 121 (128)
Q Consensus 92 l~~~i~~l~~~-------~~~~~~~~~~~~i~~~i~~ 121 (128)
|.+.+.+++.+ ..+...+++++.|++.|.+
T Consensus 315 l~~~l~~ll~~~~~~~~~~~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 315 LIKHVEELSHNNEKYKTALKKYNGKEAIQTIIDHISE 351 (352)
T ss_pred HHHHHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 88888887531 1222345778888887754
No 5
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.71 E-value=6.9e-17 Score=124.52 Aligned_cols=81 Identities=27% Similarity=0.354 Sum_probs=73.5
Q ss_pred cccEEEEeCh-hhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChH
Q 033044 17 LLAVDCFTFS-SSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQ 90 (128)
Q Consensus 17 ~~~~~v~~f~-~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~ 90 (128)
..|+++++|. +++.++|+.||+||||+|++|++|++++|+|+|++|.+.+ .+|..||+++++.|++..+ +++
T Consensus 231 ~~ni~~~~~~~~~~~~~m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~--~EQ~~~a~~l~~~G~~~~~~~~~~~~~ 308 (318)
T PF13528_consen 231 PGNIHVRPFSTPDFAELMAAADLVISKGGYTTISEALALGKPALVIPRPGQ--DEQEYNARKLEELGLGIVLSQEDLTPE 308 (318)
T ss_pred CCCEEEeecChHHHHHHHHhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCC--chHHHHHHHHHHCCCeEEcccccCCHH
Confidence 5689999998 8999999999999999999999999999999999999743 6899999999999999874 678
Q ss_pred HHHHHHHhc
Q 033044 91 SLHQVIVGM 99 (128)
Q Consensus 91 ~l~~~i~~l 99 (128)
.|+++|+++
T Consensus 309 ~l~~~l~~~ 317 (318)
T PF13528_consen 309 RLAEFLERL 317 (318)
T ss_pred HHHHHHhcC
Confidence 888888765
No 6
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=3.6e-16 Score=108.74 Aligned_cols=102 Identities=36% Similarity=0.522 Sum_probs=82.9
Q ss_pred CCccccCCCcccCCCCcccEEEEeC--hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCC----CCCchHHHH
Q 033044 1 MGQGTYLPAESIGEDGLLAVDCFTF--SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNED----LMDNHQSEL 74 (128)
Q Consensus 1 ~g~~~~~p~~~~~~~~~~~~~v~~f--~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~----~~~~~Q~~n 74 (128)
||+|++.|-+ + .++++| .+.|..++..|.+||+|||.||+..++..+||.|++|+.. ++|+||.+.
T Consensus 37 yGn~d~kpva------g--l~v~~F~~~~kiQsli~darIVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvel 108 (161)
T COG5017 37 YGNGDIKPVA------G--LRVYGFDKEEKIQSLIHDARIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVEL 108 (161)
T ss_pred ecCCCccccc------c--cEEEeechHHHHHHHhhcceEEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHH
Confidence 6899998843 3 355555 4679999999999999999999999999999999999986 899999999
Q ss_pred HHHHHhCCCEEEeCh-HH-HHHHHHhcchhcCCCCCCC
Q 033044 75 AEELADRKHLYCAHP-QS-LHQVIVGMDLKSLLPYQPG 110 (128)
Q Consensus 75 A~~l~~~g~~~~~~~-~~-l~~~i~~l~~~~~~~~~~~ 110 (128)
|..|.+.++...++| +. |.+.++........+++..
T Consensus 109 a~klae~~~vv~~spte~~L~a~l~~s~~~v~~~~~~s 146 (161)
T COG5017 109 ALKLAEINYVVACSPTELVLQAGLQVSVADVLHPFPIS 146 (161)
T ss_pred HHHHHhcCceEEEcCCchhhHHhHhhhhhhhcCCCccc
Confidence 999999999977653 44 5666665555555666543
No 7
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.65 E-value=7.4e-16 Score=124.43 Aligned_cols=103 Identities=20% Similarity=0.207 Sum_probs=86.0
Q ss_pred CcccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChH
Q 033044 16 GLLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQ 90 (128)
Q Consensus 16 ~~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~ 90 (128)
...|+.+..|+++ .+++.+||+||||||+||++|++++|+|+|++|.. .||..||.++++.|+|+.+ +++
T Consensus 282 ~p~n~~v~~~~p~-~~~l~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~----~DQ~~nA~rve~~G~G~~l~~~~l~~~ 356 (406)
T COG1819 282 VPDNVIVADYVPQ-LELLPRADAVIHHGGAGTTSEALYAGVPLVVIPDG----ADQPLNAERVEELGAGIALPFEELTEE 356 (406)
T ss_pred CCCceEEecCCCH-HHHhhhcCEEEecCCcchHHHHHHcCCCEEEecCC----cchhHHHHHHHHcCCceecCcccCCHH
Confidence 4458999999996 68999999999999999999999999999999996 7899999999999999763 789
Q ss_pred HHHHHHHhcchh----------cCCCCCCCChHHHHHHHHHhc
Q 033044 91 SLHQVIVGMDLK----------SLLPYQPGDATPVAKLINRFL 123 (128)
Q Consensus 91 ~l~~~i~~l~~~----------~~~~~~~~~~~~i~~~i~~~~ 123 (128)
.|+++|++++.. ........+.+++++.|.++.
T Consensus 357 ~l~~av~~vL~~~~~~~~~~~~~~~~~~~~g~~~~a~~le~~~ 399 (406)
T COG1819 357 RLRAAVNEVLADDSYRRAAERLAEEFKEEDGPAKAADLLEEFA 399 (406)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 999999999751 111223345777888887764
No 8
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.63 E-value=2.7e-15 Score=116.96 Aligned_cols=81 Identities=27% Similarity=0.322 Sum_probs=70.1
Q ss_pred cccEEEEeChh-hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHH
Q 033044 17 LLAVDCFTFSS-SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQV 95 (128)
Q Consensus 17 ~~~~~v~~f~~-~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~ 95 (128)
..|+++++|.+ +|.++|.+||++|||+|++|++|++++|+|+|++|.+. +.||..||+.+++.|+++.++..++ +.
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~--~~eQ~~na~~l~~~g~~~~l~~~~~-~~ 304 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAELVITHGGFSLISEALSLGKPLIVIPDLG--QFEQGNNAVKLEDLGCGIALEYKEL-RL 304 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCEEEECCChHHHHHHHHcCCCEEEEcCCC--cccHHHHHHHHHHCCCEEEcChhhH-HH
Confidence 45889999995 89999999999999999999999999999999999973 3589999999999999988766665 44
Q ss_pred HHhcc
Q 033044 96 IVGMD 100 (128)
Q Consensus 96 i~~l~ 100 (128)
++.++
T Consensus 305 ~~~~~ 309 (321)
T TIGR00661 305 LEAIL 309 (321)
T ss_pred HHHHH
Confidence 44443
No 9
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.62 E-value=1.2e-15 Score=121.16 Aligned_cols=80 Identities=21% Similarity=0.166 Sum_probs=72.0
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChHH
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQS 91 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~~ 91 (128)
..|+.+.+|++ +.++|..||++|||||+||++|++++|+|+|++|.. .+|..||+++++.|+++.+ ++++
T Consensus 287 ~~~v~~~~~~p-~~~ll~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~----~dQ~~~a~~~~~~G~g~~l~~~~~~~~~ 361 (401)
T cd03784 287 PDNVRVVDFVP-HDWLLPRCAAVVHHGGAGTTAAALRAGVPQLVVPFF----GDQPFWAARVAELGAGPALDPRELTAER 361 (401)
T ss_pred CCceEEeCCCC-HHHHhhhhheeeecCCchhHHHHHHcCCCEEeeCCC----CCcHHHHHHHHHCCCCCCCCcccCCHHH
Confidence 45899999997 589999999999999999999999999999999986 5799999999999998663 6788
Q ss_pred HHHHHHhcch
Q 033044 92 LHQVIVGMDL 101 (128)
Q Consensus 92 l~~~i~~l~~ 101 (128)
|.++++++++
T Consensus 362 l~~al~~~l~ 371 (401)
T cd03784 362 LAAALRRLLD 371 (401)
T ss_pred HHHHHHHHhC
Confidence 9999988764
No 10
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.59 E-value=2.6e-15 Score=124.23 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=72.7
Q ss_pred CcccEEEEeChhhHHHHH--hhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----C
Q 033044 16 GLLAVDCFTFSSSIADHL--SSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----H 88 (128)
Q Consensus 16 ~~~~~~v~~f~~~~~~~~--~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~ 88 (128)
...|+.+.+|.|+ .++| .+++++|||||.||++|++++|+|+|++|.. .||..||++++++|+|+.+ +
T Consensus 344 ~p~Nv~i~~w~Pq-~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~----~DQ~~Na~rv~~~G~G~~l~~~~~t 418 (507)
T PHA03392 344 LPANVLTQKWFPQ-RAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMM----GDQFYNTNKYVELGIGRALDTVTVS 418 (507)
T ss_pred CCCceEEecCCCH-HHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCC----ccHHHHHHHHHHcCcEEEeccCCcC
Confidence 3468999999997 6888 6799999999999999999999999999997 6899999999999999764 7
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
.++|.++|++++.
T Consensus 419 ~~~l~~ai~~vl~ 431 (507)
T PHA03392 419 AAQLVLAIVDVIE 431 (507)
T ss_pred HHHHHHHHHHHhC
Confidence 7899999988864
No 11
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.57 E-value=1.2e-14 Score=115.65 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=81.6
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChHH
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQS 91 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~~ 91 (128)
..++.+.+|+++ .++|+.||++|||||.+|++|++++|+|+|++|.. .+|..||+++++.|++..+ ++++
T Consensus 274 ~~~v~~~~~~p~-~~ll~~~~~~I~hgG~~t~~Eal~~G~P~v~~p~~----~dq~~~a~~l~~~g~g~~l~~~~~~~~~ 348 (392)
T TIGR01426 274 PPNVEVRQWVPQ-LEILKKADAFITHGGMNSTMEALFNGVPMVAVPQG----ADQPMTARRIAELGLGRHLPPEEVTAEK 348 (392)
T ss_pred CCCeEEeCCCCH-HHHHhhCCEEEECCCchHHHHHHHhCCCEEecCCc----ccHHHHHHHHHHCCCEEEeccccCCHHH
Confidence 357889999987 58999999999999999999999999999999986 6899999999999999664 5788
Q ss_pred HHHHHHhcchhc----------CCCCCCCChHHHHHHHHHhc
Q 033044 92 LHQVIVGMDLKS----------LLPYQPGDATPVAKLINRFL 123 (128)
Q Consensus 92 l~~~i~~l~~~~----------~~~~~~~~~~~i~~~i~~~~ 123 (128)
|.++|++++.+. ......++++..++.|.+++
T Consensus 349 l~~ai~~~l~~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 349 LREAVLAVLSDPRYAERLRKMRAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 999998875321 00112245667777776653
No 12
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.57 E-value=2.7e-14 Score=111.79 Aligned_cols=107 Identities=24% Similarity=0.325 Sum_probs=88.4
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---C--hHH
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---H--PQS 91 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~--~~~ 91 (128)
+.++++.+|++++.++|+.||++|+++|.+|++|++++|+|+|++|.+....++|..+++.+.+.|.++++ + ++.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~ 313 (357)
T PRK00726 234 GINAEVVPFIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEK 313 (357)
T ss_pred CCcEEEeehHhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHH
Confidence 34589999999999999999999999999999999999999999998655557899999999999999765 3 899
Q ss_pred HHHHHHhcchh----------cCCCCCCCChHHHHHHHHHhc
Q 033044 92 LHQVIVGMDLK----------SLLPYQPGDATPVAKLINRFL 123 (128)
Q Consensus 92 l~~~i~~l~~~----------~~~~~~~~~~~~i~~~i~~~~ 123 (128)
|.++|++++.+ ..+...+.+++.+++.+.+.+
T Consensus 314 l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 314 LAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEELA 355 (357)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHh
Confidence 99999988531 222344567778888877653
No 13
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.55 E-value=4.7e-14 Score=111.28 Aligned_cols=106 Identities=22% Similarity=0.307 Sum_probs=88.7
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChHH
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQS 91 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~~ 91 (128)
.++++++.|..+|..+|..|+++||.||+||++|.+.+|||.++||+..... +|...|+++++.|+.-++ +++.
T Consensus 276 ~p~i~I~~f~~~~~~ll~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~e-EQliRA~Rl~~LGL~dvL~pe~lt~~~ 354 (400)
T COG4671 276 RPHISIFEFRNDFESLLAGARLVVSMGGYNTVCEILSFGKPALIVPRAAPRE-EQLIRAQRLEELGLVDVLLPENLTPQN 354 (400)
T ss_pred CCCeEEEEhhhhHHHHHHhhheeeecccchhhhHHHhCCCceEEeccCCCcH-HHHHHHHHHHhcCcceeeCcccCChHH
Confidence 3789999999999999999999999999999999999999999999986644 899999999999999553 7888
Q ss_pred HHHHHHhcchh---cCCCCCCCChHHHHHHHHHhc
Q 033044 92 LHQVIVGMDLK---SLLPYQPGDATPVAKLINRFL 123 (128)
Q Consensus 92 l~~~i~~l~~~---~~~~~~~~~~~~i~~~i~~~~ 123 (128)
|+++|..++.. ......=++.+.++++|.+++
T Consensus 355 La~al~~~l~~P~~~~~~L~L~G~~~~a~~l~e~L 389 (400)
T COG4671 355 LADALKAALARPSPSKPHLDLEGLEHIARILAELL 389 (400)
T ss_pred HHHHHHhcccCCCCCccccCchhhHhHHHHHHHHh
Confidence 99999888652 111111256888888887765
No 14
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.53 E-value=7.6e-14 Score=111.62 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=86.0
Q ss_pred ccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE-eCCCCCCchHHHHHHHHHhCCCEEEe-ChHHHHHH
Q 033044 18 LAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV-VNEDLMDNHQSELAEELADRKHLYCA-HPQSLHQV 95 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v-P~~~~~~~~Q~~nA~~l~~~g~~~~~-~~~~l~~~ 95 (128)
.++++.+|+++|.++|+.||++|+++|..|++|++++|+|+|++ |.+ ++|..|+..+.+.|+++.. +++++.+.
T Consensus 256 ~~v~~~G~~~~~~~~~~~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~p----gqe~~N~~~~~~~G~g~~~~~~~~l~~~ 331 (391)
T PRK13608 256 ENVLILGYTKHMNEWMASSQLMITKPGGITISEGLARCIPMIFLNPAP----GQELENALYFEEKGFGKIADTPEEAIKI 331 (391)
T ss_pred CCeEEEeccchHHHHHHhhhEEEeCCchHHHHHHHHhCCCEEECCCCC----CcchhHHHHHHhCCcEEEeCCHHHHHHH
Confidence 47899999999999999999999999999999999999999998 665 5678999999999999765 88899888
Q ss_pred HHhcch----------hcCCCCCCCChHHHHHHHHHhcC
Q 033044 96 IVGMDL----------KSLLPYQPGDATPVAKLINRFLG 124 (128)
Q Consensus 96 i~~l~~----------~~~~~~~~~~~~~i~~~i~~~~g 124 (128)
|.++++ +..+...+.+.+.+++.+.+.++
T Consensus 332 i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 332 VASLTNGNEQLTNMISTMEQDKIKYATQTICRDLLDLIG 370 (391)
T ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Confidence 887753 12233445678888888877664
No 15
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.52 E-value=5.5e-14 Score=114.92 Aligned_cols=81 Identities=20% Similarity=0.150 Sum_probs=65.6
Q ss_pred CcccEEEEeChhhHHHHHh--hccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----C
Q 033044 16 GLLAVDCFTFSSSIADHLS--SASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----H 88 (128)
Q Consensus 16 ~~~~~~v~~f~~~~~~~~~--~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~ 88 (128)
.+.|+.+..|.|+ .++|+ +.+++|||||.+|+.|++++|+|+|.+|.. +||..||.++++.|.|+.+ +
T Consensus 321 l~~n~~~~~W~PQ-~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~----~DQ~~na~~~~~~G~g~~l~~~~~~ 395 (500)
T PF00201_consen 321 LPKNVLIVKWLPQ-NDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLF----GDQPRNAARVEEKGVGVVLDKNDLT 395 (500)
T ss_dssp HHTTEEEESS--H-HHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCS----TTHHHHHHHHHHTTSEEEEGGGC-S
T ss_pred ccceEEEeccccc-hhhhhcccceeeeeccccchhhhhhhccCCccCCCCc----ccCCccceEEEEEeeEEEEEecCCc
Confidence 3468899999998 58885 667999999999999999999999999997 7899999999999999874 7
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
.++|.++|++++.
T Consensus 396 ~~~l~~ai~~vl~ 408 (500)
T PF00201_consen 396 EEELRAAIREVLE 408 (500)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8899999999864
No 16
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.48 E-value=3.4e-13 Score=107.30 Aligned_cols=103 Identities=16% Similarity=0.254 Sum_probs=85.2
Q ss_pred ccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-ChHHHHHHH
Q 033044 18 LAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-HPQSLHQVI 96 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-~~~~l~~~i 96 (128)
.++++.+|+++|.++|+.||++|+.+|.+|++|++++|+|+|+.+.. .+++..|+..+.+.|.++.. +++.|.++|
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~---pgqe~gn~~~i~~~g~g~~~~~~~~la~~i 341 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDCIITKAGPGTIAEALIRGLPIILNGYI---PGQEEGNVPYVVDNGFGAFSESPKEIARIV 341 (382)
T ss_pred CCeEEEeccccHHHHHHhCCEEEECCCcchHHHHHHcCCCEEEecCC---CccchhhHHHHHhCCceeecCCHHHHHHHH
Confidence 46889999999999999999999999999999999999999999653 35667899999999998664 889999998
Q ss_pred Hhcchh-----------cCCCCCCCChHHHHHHHHHhc
Q 033044 97 VGMDLK-----------SLLPYQPGDATPVAKLINRFL 123 (128)
Q Consensus 97 ~~l~~~-----------~~~~~~~~~~~~i~~~i~~~~ 123 (128)
.+++.+ .++...+++++.+++.|.+.+
T Consensus 342 ~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 342 AEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 877532 122345577888888887764
No 17
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.41 E-value=2.1e-12 Score=100.19 Aligned_cols=85 Identities=26% Similarity=0.350 Sum_probs=75.4
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChHH
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQS 91 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~~ 91 (128)
+.++++.+|++++.++|+.||++|+++|.+|+.|++++|+|+|++|.+...+++|..+++.+.+.|.++.+ +++.
T Consensus 234 ~~~v~~~g~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~ 313 (350)
T cd03785 234 GVNYEVFPFIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPER 313 (350)
T ss_pred CCCeEEeehhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHH
Confidence 35799999999999999999999999999999999999999999998765568999999999999988653 5889
Q ss_pred HHHHHHhcch
Q 033044 92 LHQVIVGMDL 101 (128)
Q Consensus 92 l~~~i~~l~~ 101 (128)
|.++|.+++.
T Consensus 314 l~~~i~~ll~ 323 (350)
T cd03785 314 LAAALLELLS 323 (350)
T ss_pred HHHHHHHHhc
Confidence 9999987753
No 18
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.41 E-value=2.5e-12 Score=101.68 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=85.8
Q ss_pred ccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE-eCCCCCCchHHHHHHHHHhCCCEEEe-ChHHHHHH
Q 033044 18 LAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV-VNEDLMDNHQSELAEELADRKHLYCA-HPQSLHQV 95 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v-P~~~~~~~~Q~~nA~~l~~~g~~~~~-~~~~l~~~ 95 (128)
.++++.+|++++.++|+.||++|+++|..|+.|++++|+|+|+. |.+ ++|..|+..+.+.|+++.. ++++|.++
T Consensus 256 ~~v~~~g~~~~~~~l~~~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~----g~~~~n~~~~~~~G~~~~~~~~~~l~~~ 331 (380)
T PRK13609 256 DALKVFGYVENIDELFRVTSCMITKPGGITLSEAAALGVPVILYKPVP----GQEKENAMYFERKGAAVVIRDDEEVFAK 331 (380)
T ss_pred CcEEEEechhhHHHHHHhccEEEeCCCchHHHHHHHhCCCEEECCCCC----CcchHHHHHHHhCCcEEEECCHHHHHHH
Confidence 47999999999999999999999999999999999999998885 554 5678899999999998764 88999999
Q ss_pred HHhcchh----------cCCCCCCCChHHHHHHHHHhcCC
Q 033044 96 IVGMDLK----------SLLPYQPGDATPVAKLINRFLGF 125 (128)
Q Consensus 96 i~~l~~~----------~~~~~~~~~~~~i~~~i~~~~g~ 125 (128)
|.+++.+ ..+...+.+.+++++.+.+.++.
T Consensus 332 i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 332 TEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILAENHV 371 (380)
T ss_pred HHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHhhhh
Confidence 8887531 12233446788999999887753
No 19
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.39 E-value=4.8e-12 Score=101.93 Aligned_cols=98 Identities=20% Similarity=0.199 Sum_probs=77.2
Q ss_pred cEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC----CCEEEe---ChHH
Q 033044 19 AVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR----KHLYCA---HPQS 91 (128)
Q Consensus 19 ~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~----g~~~~~---~~~~ 91 (128)
++++..|.++|.++|+.||+|||++|+.| .|++++|+|+|++|.+ +||. ||..+++. |.++.+ +++.
T Consensus 280 ~~~v~~~~~~~~~~l~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~----~~q~-na~~~~~~~~l~g~~~~l~~~~~~~ 353 (396)
T TIGR03492 280 TLEVLLGRGAFAEILHWADLGIAMAGTAT-EQAVGLGKPVIQLPGK----GPQF-TYGFAEAQSRLLGGSVFLASKNPEQ 353 (396)
T ss_pred ceEEEechHhHHHHHHhCCEEEECcCHHH-HHHHHhCCCEEEEeCC----CCHH-HHHHHHhhHhhcCCEEecCCCCHHH
Confidence 36777888899999999999999999877 9999999999999985 6897 99888874 666553 5688
Q ss_pred HHHHHHhcchh-----------cCCCCCCCChHHHHHHHHHh
Q 033044 92 LHQVIVGMDLK-----------SLLPYQPGDATPVAKLINRF 122 (128)
Q Consensus 92 l~~~i~~l~~~-----------~~~~~~~~~~~~i~~~i~~~ 122 (128)
|.+.+.+++++ ..+...+++++.+++.|.+.
T Consensus 354 l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~~i~~~ 395 (396)
T TIGR03492 354 AAQVVRQLLADPELLERCRRNGQERMGPPGASARIAESILKQ 395 (396)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence 88888777531 11223456788888888765
No 20
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.36 E-value=1.7e-12 Score=100.05 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=51.7
Q ss_pred ccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHH
Q 033044 18 LAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEEL 78 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l 78 (128)
.++++++|+++|.++|++||++||++| +|++|++++|+|+|++|.. ++|..||+.|
T Consensus 224 ~~i~~~~~~~~m~~lm~~aDl~Is~~G-~T~~E~~a~g~P~i~i~~~----~nQ~~~a~~~ 279 (279)
T TIGR03590 224 PNIILFIDVENMAELMNEADLAIGAAG-STSWERCCLGLPSLAICLA----ENQQSNSQQL 279 (279)
T ss_pred CCEEEEeCHHHHHHHHHHCCEEEECCc-hHHHHHHHcCCCEEEEEec----ccHHHHhhhC
Confidence 479999999999999999999999999 8999999999999999986 4688999864
No 21
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.30 E-value=4.5e-12 Score=103.76 Aligned_cols=79 Identities=18% Similarity=0.102 Sum_probs=68.6
Q ss_pred ccEEEEeChhhHHHHHhhcc--EEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC-CCEEE----eChH
Q 033044 18 LAVDCFTFSSSIADHLSSAS--LVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR-KHLYC----AHPQ 90 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~ad--lvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~-g~~~~----~~~~ 90 (128)
.+..+.+|.|+ .++++..+ ++|||||.||++|++++|+|+|.+|.. .||..||+++++. |+++. .+.+
T Consensus 324 ~~g~v~~w~PQ-~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~----~DQ~~na~~~~~~~~~G~~~~~~~~~~ 398 (451)
T PLN02410 324 GRGYIVKWAPQ-KEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFS----SDQKVNARYLECVWKIGIQVEGDLDRG 398 (451)
T ss_pred CCeEEEccCCH-HHHhCCCccCeeeecCchhHHHHHHHcCCCEEecccc----ccCHHHHHHHHHHhCeeEEeCCcccHH
Confidence 35678899998 68998855 599999999999999999999999996 6899999999876 88855 3789
Q ss_pred HHHHHHHhcch
Q 033044 91 SLHQVIVGMDL 101 (128)
Q Consensus 91 ~l~~~i~~l~~ 101 (128)
+++++|++++.
T Consensus 399 ~v~~av~~lm~ 409 (451)
T PLN02410 399 AVERAVKRLMV 409 (451)
T ss_pred HHHHHHHHHHc
Confidence 99999999874
No 22
>PLN03004 UDP-glycosyltransferase
Probab=99.29 E-value=8.6e-12 Score=102.16 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=70.6
Q ss_pred ccEEEEeChhhHHHHHhhccE--EEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEEe-------
Q 033044 18 LAVDCFTFSSSIADHLSSASL--VISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD-RKHLYCA------- 87 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adl--vIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~-~g~~~~~------- 87 (128)
.++.+.+|.|+ .++++.+++ +|||||.+|++|++++|+|+|.+|.. .+|..||+++++ .|+++.+
T Consensus 334 ~g~~v~~W~PQ-~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~----~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVVKSWAPQ-VPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLY----AEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEEEeeCCH-HHHhCCCccceEeccCcchHHHHHHHcCCCEEecccc----ccchhhHHHHHHHhCceEEecCCcCCc
Confidence 57889999998 589999998 99999999999999999999999996 789999999986 5888543
Q ss_pred -ChHHHHHHHHhcch
Q 033044 88 -HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 -~~~~l~~~i~~l~~ 101 (128)
+.++++++|++++.
T Consensus 409 ~~~e~l~~av~~vm~ 423 (451)
T PLN03004 409 VSSTEVEKRVQEIIG 423 (451)
T ss_pred cCHHHHHHHHHHHhc
Confidence 67899999999974
No 23
>PLN02670 transferase, transferring glycosyl groups
Probab=99.29 E-value=4.5e-12 Score=104.28 Aligned_cols=77 Identities=21% Similarity=0.195 Sum_probs=67.9
Q ss_pred EEEEeChhhHHHHHhhccE--EEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---------C
Q 033044 20 VDCFTFSSSIADHLSSASL--VISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---------H 88 (128)
Q Consensus 20 ~~v~~f~~~~~~~~~~adl--vIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---------~ 88 (128)
+.+.+|.|+ .++++..++ +|||||.+|++|++++|+|+|.+|.. .+|..||+++++.|+++.+ +
T Consensus 341 ~vv~~W~PQ-~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~----~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~ 415 (472)
T PLN02670 341 MIHVGWVPQ-VKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL----NEQGLNTRLLHGKKLGLEVPRDERDGSFT 415 (472)
T ss_pred eEEeCcCCH-HHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch----hccHHHHHHHHHcCeeEEeeccccCCcCc
Confidence 677899998 588977665 99999999999999999999999986 7899999999999999653 5
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
.++++++|++++.
T Consensus 416 ~e~i~~av~~vm~ 428 (472)
T PLN02670 416 SDSVAESVRLAMV 428 (472)
T ss_pred HHHHHHHHHHHhc
Confidence 7889999999873
No 24
>PLN02210 UDP-glucosyl transferase
Probab=99.29 E-value=5.9e-12 Score=103.19 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=67.9
Q ss_pred EEEEeChhhHHHHHhhcc--EEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEEe---------
Q 033044 20 VDCFTFSSSIADHLSSAS--LVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD-RKHLYCA--------- 87 (128)
Q Consensus 20 ~~v~~f~~~~~~~~~~ad--lvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~-~g~~~~~--------- 87 (128)
..+.+|.|+ .++++.++ ++|||||.||++|++++|+|+|.+|.. .||..||+++++ .|+|+.+
T Consensus 326 g~v~~w~PQ-~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~----~DQ~~na~~~~~~~g~G~~l~~~~~~~~~ 400 (456)
T PLN02210 326 GVVLEWSPQ-EKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSW----TDQPIDARLLVDVFGIGVRMRNDAVDGEL 400 (456)
T ss_pred eEEEecCCH-HHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccc----cccHHHHHHHHHHhCeEEEEeccccCCcC
Confidence 357799998 58999998 999999999999999999999999996 789999999998 7888543
Q ss_pred ChHHHHHHHHhcch
Q 033044 88 HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ~~~~l~~~i~~l~~ 101 (128)
+.++|++++++++.
T Consensus 401 ~~~~l~~av~~~m~ 414 (456)
T PLN02210 401 KVEEVERCIEAVTE 414 (456)
T ss_pred CHHHHHHHHHHHhc
Confidence 67889999998863
No 25
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.27 E-value=7.1e-12 Score=103.22 Aligned_cols=78 Identities=17% Similarity=0.129 Sum_probs=66.6
Q ss_pred cEEEEeChhhHHHHH--hhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHH-HHhCCCEEE---------
Q 033044 19 AVDCFTFSSSIADHL--SSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEE-LADRKHLYC--------- 86 (128)
Q Consensus 19 ~~~v~~f~~~~~~~~--~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~-l~~~g~~~~--------- 86 (128)
+..+.+|.|+ .+++ .++.++|||||.||+.|++++|+|+|++|.. .||..||++ +++.|+++.
T Consensus 343 ~g~v~~W~PQ-~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~----~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~ 417 (481)
T PLN02554 343 IGKVIGWAPQ-VAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY----AEQKFNAFEMVEELGLAVEIRKYWRGDL 417 (481)
T ss_pred CceEEeeCCH-HHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc----ccchhhHHHHHHHhCceEEeeccccccc
Confidence 5677899998 5888 7778899999999999999999999999996 789999954 677888743
Q ss_pred -------eChHHHHHHHHhcch
Q 033044 87 -------AHPQSLHQVIVGMDL 101 (128)
Q Consensus 87 -------~~~~~l~~~i~~l~~ 101 (128)
++.+++.++|++++.
T Consensus 418 ~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 418 LAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred cccccCeEcHHHHHHHHHHHhc
Confidence 367889999998874
No 26
>PLN02562 UDP-glycosyltransferase
Probab=99.27 E-value=1.5e-11 Score=100.66 Aligned_cols=79 Identities=13% Similarity=0.083 Sum_probs=69.0
Q ss_pred ccEEEEeChhhHHHHHhhcc--EEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC-CCEEEe---ChHH
Q 033044 18 LAVDCFTFSSSIADHLSSAS--LVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR-KHLYCA---HPQS 91 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~ad--lvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~-g~~~~~---~~~~ 91 (128)
.|+.+.+|.|+ .++++.++ ++|||||.||++|++++|+|+|.+|.. .||..||+++++. |.++.+ +.++
T Consensus 328 ~~~~v~~w~PQ-~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~----~DQ~~na~~~~~~~g~g~~~~~~~~~~ 402 (448)
T PLN02562 328 KQGKVVSWAPQ-LEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVA----GDQFVNCAYIVDVWKIGVRISGFGQKE 402 (448)
T ss_pred cCEEEEecCCH-HHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcc----cchHHHHHHHHHHhCceeEeCCCCHHH
Confidence 46788899998 68998866 799999999999999999999999996 7899999999874 877653 7889
Q ss_pred HHHHHHhcch
Q 033044 92 LHQVIVGMDL 101 (128)
Q Consensus 92 l~~~i~~l~~ 101 (128)
+.++|++++.
T Consensus 403 l~~~v~~~l~ 412 (448)
T PLN02562 403 VEEGLRKVME 412 (448)
T ss_pred HHHHHHHHhC
Confidence 9999988863
No 27
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.26 E-value=1.5e-11 Score=100.69 Aligned_cols=78 Identities=13% Similarity=0.110 Sum_probs=67.3
Q ss_pred cEEEEeChhhHHHHHhhccE--EEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC-CCEEE---------
Q 033044 19 AVDCFTFSSSIADHLSSASL--VISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR-KHLYC--------- 86 (128)
Q Consensus 19 ~~~v~~f~~~~~~~~~~adl--vIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~-g~~~~--------- 86 (128)
+..+.+|.|+ .++++.+++ +|||||.||++|++++|+|+|++|.. .+|..||+++++. |+++.
T Consensus 324 ~~~v~~w~pQ-~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~----~DQ~~na~~v~~~~g~G~~~~~~~~~~~ 398 (459)
T PLN02448 324 MGLVVPWCDQ-LKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLF----WDQPLNSKLIVEDWKIGWRVKREVGEET 398 (459)
T ss_pred CEEEeccCCH-HHHhccCccceEEecCchhHHHHHHHcCCCEEecccc----ccchhhHHHHHHHhCceEEEecccccCC
Confidence 5678899998 689988876 99999999999999999999999986 7899999999984 55533
Q ss_pred -eChHHHHHHHHhcch
Q 033044 87 -AHPQSLHQVIVGMDL 101 (128)
Q Consensus 87 -~~~~~l~~~i~~l~~ 101 (128)
.++++|++++++++.
T Consensus 399 ~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 399 LVGREEIAELVKRFMD 414 (459)
T ss_pred cCcHHHHHHHHHHHhc
Confidence 267889999999874
No 28
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.26 E-value=6.1e-12 Score=103.60 Aligned_cols=80 Identities=10% Similarity=0.063 Sum_probs=68.3
Q ss_pred cccEEEEeChhhHHHHHhhccE--EEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHH---hCCCEEE-----
Q 033044 17 LLAVDCFTFSSSIADHLSSASL--VISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELA---DRKHLYC----- 86 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adl--vIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~---~~g~~~~----- 86 (128)
+.++.+.+|.|+ .++++.+++ +|||||.+|++|++++|+|+|.+|.. .+|..||++++ +.|+++.
T Consensus 344 ~~g~~v~~w~PQ-~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~----~DQ~~na~~~~~~~~~G~~~~~~~~~ 418 (482)
T PLN03007 344 GKGLIIRGWAPQ-VLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVG----AEQFYNEKLVTQVLRTGVSVGAKKLV 418 (482)
T ss_pred cCCEEEecCCCH-HHHhccCccceeeecCcchHHHHHHHcCCCeeeccch----hhhhhhHHHHHHhhcceeEecccccc
Confidence 347889999998 689999865 99999999999999999999999996 78999999876 4566641
Q ss_pred ------eChHHHHHHHHhcch
Q 033044 87 ------AHPQSLHQVIVGMDL 101 (128)
Q Consensus 87 ------~~~~~l~~~i~~l~~ 101 (128)
++.++|.++|++++.
T Consensus 419 ~~~~~~~~~~~l~~av~~~m~ 439 (482)
T PLN03007 419 KVKGDFISREKVEKAVREVIV 439 (482)
T ss_pred ccccCcccHHHHHHHHHHHhc
Confidence 378889999998874
No 29
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.26 E-value=1.4e-11 Score=101.56 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=69.1
Q ss_pred ccEEEEeChhhHHHHHhhccE--EEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHH-hCCCEEEe-------
Q 033044 18 LAVDCFTFSSSIADHLSSASL--VISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELA-DRKHLYCA------- 87 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adl--vIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~-~~g~~~~~------- 87 (128)
-++.+.+|.|+ .++++.+.+ +|||||.+|++|++++|+|+|.+|.. .+|..||+++. +.|+++.+
T Consensus 338 rg~vv~~W~PQ-~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~----~DQ~~na~~~~~~~g~gv~~~~~~~~~ 412 (481)
T PLN02992 338 RGFVVPSWAPQ-AEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLF----AEQNMNAALLSDELGIAVRSDDPKEVI 412 (481)
T ss_pred CCEEEeecCCH-HHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCcc----chhHHHHHHHHHHhCeeEEecCCCCcc
Confidence 36888999998 589999885 99999999999999999999999996 78999999995 88988653
Q ss_pred ChHHHHHHHHhcch
Q 033044 88 HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ~~~~l~~~i~~l~~ 101 (128)
+.+++.++|++++.
T Consensus 413 ~~~~l~~av~~vm~ 426 (481)
T PLN02992 413 SRSKIEALVRKVMV 426 (481)
T ss_pred cHHHHHHHHHHHhc
Confidence 67888999988863
No 30
>PLN02207 UDP-glycosyltransferase
Probab=99.26 E-value=8.4e-12 Score=102.61 Aligned_cols=79 Identities=19% Similarity=0.146 Sum_probs=68.2
Q ss_pred ccEEEEeChhhHHHHHhhccE--EEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEE---------
Q 033044 18 LAVDCFTFSSSIADHLSSASL--VISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD-RKHLY--------- 85 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adl--vIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~-~g~~~--------- 85 (128)
.+..+.+|.|+ .++++...+ +|||||.+|++|++++|+|+|.+|.. .+|..||+++++ .|+++
T Consensus 332 ~~g~i~~W~PQ-~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~----~DQ~~Na~~~~~~~gvGv~~~~~~~~~ 406 (468)
T PLN02207 332 GRGMICGWSPQ-VEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMY----AEQQLNAFLMVKELKLAVELKLDYRVH 406 (468)
T ss_pred CCeEEEEeCCH-HHHhcccccceeeecCccccHHHHHHcCCCEEecCcc----ccchhhHHHHHHHhCceEEEecccccc
Confidence 45677899998 588888665 99999999999999999999999996 789999999887 78886
Q ss_pred ---EeChHHHHHHHHhcch
Q 033044 86 ---CAHPQSLHQVIVGMDL 101 (128)
Q Consensus 86 ---~~~~~~l~~~i~~l~~ 101 (128)
.++.++|.++|++++.
T Consensus 407 ~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 407 SDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cCCcccHHHHHHHHHHHHh
Confidence 1377899999999874
No 31
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.25 E-value=1.3e-11 Score=101.03 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=68.7
Q ss_pred ccEEEEeChhhHHHHHhhcc--EEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC-CCEEEe-------
Q 033044 18 LAVDCFTFSSSIADHLSSAS--LVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR-KHLYCA------- 87 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~ad--lvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~-g~~~~~------- 87 (128)
-++.+.+|.|+ .++++..+ ++|||||.+|++|++++|+|+|.+|.. .+|..||+++++. |+++.+
T Consensus 317 ~~~~i~~W~PQ-~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~----~DQ~~Na~~v~~~~g~Gv~v~~~~~~~ 391 (449)
T PLN02173 317 DKSLVLKWSPQ-LQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQW----TDQPMNAKYIQDVWKVGVRVKAEKESG 391 (449)
T ss_pred CceEEeCCCCH-HHHhCCCccceEEecCccchHHHHHHcCCCEEecCch----hcchHHHHHHHHHhCceEEEeecccCC
Confidence 46788899998 57888877 999999999999999999999999986 7899999999975 666432
Q ss_pred --ChHHHHHHHHhcch
Q 033044 88 --HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 --~~~~l~~~i~~l~~ 101 (128)
+.+++.+++++++.
T Consensus 392 ~~~~e~v~~av~~vm~ 407 (449)
T PLN02173 392 IAKREEIEFSIKEVME 407 (449)
T ss_pred cccHHHHHHHHHHHhc
Confidence 67889999999873
No 32
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.23 E-value=1.6e-11 Score=100.70 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=68.4
Q ss_pred ccEEEEeChhhHHHHHhhcc--EEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh---CCCEEE------
Q 033044 18 LAVDCFTFSSSIADHLSSAS--LVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD---RKHLYC------ 86 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~ad--lvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~---~g~~~~------ 86 (128)
.+..+.+|.|++ ++++..+ ++|||||.+|+.|++++|+|+|.+|.. .+|..||+++++ .|.++.
T Consensus 327 ~~g~v~~W~PQ~-~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~----~DQ~~na~~~~~~~~~G~~~~~~~~~~ 401 (455)
T PLN02152 327 EVGMIVSWCSQI-EVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMW----SDQPANAKLLEEIWKTGVRVRENSEGL 401 (455)
T ss_pred CCeEEEeeCCHH-HHhCCcccceEEeeCCcccHHHHHHcCCCEEecccc----ccchHHHHHHHHHhCceEEeecCcCCc
Confidence 456788999984 7888888 699999999999999999999999996 789999999998 565553
Q ss_pred eChHHHHHHHHhcch
Q 033044 87 AHPQSLHQVIVGMDL 101 (128)
Q Consensus 87 ~~~~~l~~~i~~l~~ 101 (128)
.+.++|+++|++++.
T Consensus 402 ~~~e~l~~av~~vm~ 416 (455)
T PLN02152 402 VERGEIRRCLEAVME 416 (455)
T ss_pred CcHHHHHHHHHHHHh
Confidence 378899999999874
No 33
>PLN02208 glycosyltransferase family protein
Probab=99.23 E-value=2.9e-11 Score=98.83 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=68.2
Q ss_pred ccEEEEeChhhHHHHHhhcc--EEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEEe-------
Q 033044 18 LAVDCFTFSSSIADHLSSAS--LVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD-RKHLYCA------- 87 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~ad--lvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~-~g~~~~~------- 87 (128)
.++.+.+|.|+ .++++..+ ++|||||.+|++|++++|+|+|.+|.. .||..||+++.+ .|.++.+
T Consensus 311 ~g~~v~~W~PQ-~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~----~DQ~~na~~~~~~~g~gv~~~~~~~~~ 385 (442)
T PLN02208 311 RGVVWGGWVQQ-PLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFL----SDQVLFTRLMTEEFEVSVEVSREKTGW 385 (442)
T ss_pred CCcEeeccCCH-HHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcc----hhhHHHHHHHHHHhceeEEeccccCCc
Confidence 46788899999 57888776 699999999999999999999999996 789999998877 7888543
Q ss_pred -ChHHHHHHHHhcch
Q 033044 88 -HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 -~~~~l~~~i~~l~~ 101 (128)
+.+++.++|++++.
T Consensus 386 ~~~~~l~~ai~~~m~ 400 (442)
T PLN02208 386 FSKESLSNAIKSVMD 400 (442)
T ss_pred CcHHHHHHHHHHHhc
Confidence 67889999988873
No 34
>PLN02555 limonoid glucosyltransferase
Probab=99.22 E-value=2.3e-11 Score=100.32 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=68.4
Q ss_pred ccEEEEeChhhHHHHH--hhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC-CCEEEe-------
Q 033044 18 LAVDCFTFSSSIADHL--SSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR-KHLYCA------- 87 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~--~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~-g~~~~~------- 87 (128)
.+..+.+|.|+ .+++ .++.++|||||.+|++|++++|+|+|.+|.. .+|..||+++++. |+++.+
T Consensus 337 ~~g~v~~W~PQ-~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~----~DQ~~Na~~~~~~~gvGv~l~~~~~~~ 411 (480)
T PLN02555 337 DKGKIVQWCPQ-EKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQW----GDQVTDAVYLVDVFKTGVRLCRGEAEN 411 (480)
T ss_pred CceEEEecCCH-HHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCc----cccHHHHHHHHHHhCceEEccCCcccc
Confidence 36778899998 5788 7788999999999999999999999999996 7899999999987 888543
Q ss_pred ---ChHHHHHHHHhcc
Q 033044 88 ---HPQSLHQVIVGMD 100 (128)
Q Consensus 88 ---~~~~l~~~i~~l~ 100 (128)
+.+++.++|++++
T Consensus 412 ~~v~~~~v~~~v~~vm 427 (480)
T PLN02555 412 KLITREEVAECLLEAT 427 (480)
T ss_pred CcCcHHHHHHHHHHHh
Confidence 5788999998886
No 35
>PLN02764 glycosyltransferase family protein
Probab=99.20 E-value=5.5e-11 Score=97.48 Aligned_cols=79 Identities=23% Similarity=0.154 Sum_probs=67.8
Q ss_pred ccEEEEeChhhHHHHHhhc--cEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEE--------
Q 033044 18 LAVDCFTFSSSIADHLSSA--SLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD-RKHLYC-------- 86 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~a--dlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~-~g~~~~-------- 86 (128)
-.+.+.+|.|+ .++++.. .++|||||.||++|++++|+|+|.+|.. .+|..||+++++ .|+++.
T Consensus 317 rG~v~~~W~PQ-~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~----~DQ~~na~~l~~~~g~gv~~~~~~~~~ 391 (453)
T PLN02764 317 RGVVWGGWVQQ-PLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQL----GDQVLNTRLLSDELKVSVEVAREETGW 391 (453)
T ss_pred CCcEEeCCCCH-HHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcc----cchHHHHHHHHHHhceEEEeccccCCc
Confidence 35677799998 5888875 5699999999999999999999999996 789999999965 687764
Q ss_pred eChHHHHHHHHhcch
Q 033044 87 AHPQSLHQVIVGMDL 101 (128)
Q Consensus 87 ~~~~~l~~~i~~l~~ 101 (128)
++.+++++++++++.
T Consensus 392 ~~~e~i~~av~~vm~ 406 (453)
T PLN02764 392 FSKESLRDAINSVMK 406 (453)
T ss_pred cCHHHHHHHHHHHhc
Confidence 377899999999874
No 36
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.19 E-value=4.1e-11 Score=98.75 Aligned_cols=77 Identities=21% Similarity=0.196 Sum_probs=65.3
Q ss_pred cEEEEeChhhHHHHHhh--ccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEEe--------
Q 033044 19 AVDCFTFSSSIADHLSS--ASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD-RKHLYCA-------- 87 (128)
Q Consensus 19 ~~~v~~f~~~~~~~~~~--adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~-~g~~~~~-------- 87 (128)
++.+.+|.|+ .++++. ++++|||||.||++|++++|+|+|++|.. .+|..||+++.+ .|+|+.+
T Consensus 344 g~~v~~w~PQ-~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~----~DQ~~na~~v~~~~gvG~~~~~~~~~~~ 418 (477)
T PLN02863 344 GLVIRGWAPQ-VAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMA----ADQFVNASLLVDELKVAVRVCEGADTVP 418 (477)
T ss_pred CEEecCCCCH-HHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCcc----ccchhhHHHHHHhhceeEEeccCCCCCc
Confidence 5778899998 578876 78999999999999999999999999996 689999999875 5888543
Q ss_pred ChHHHHHHHHhcc
Q 033044 88 HPQSLHQVIVGMD 100 (128)
Q Consensus 88 ~~~~l~~~i~~l~ 100 (128)
+.+++.+++.+++
T Consensus 419 ~~~~v~~~v~~~m 431 (477)
T PLN02863 419 DSDELARVFMESV 431 (477)
T ss_pred CHHHHHHHHHHHh
Confidence 5677888887765
No 37
>PLN00414 glycosyltransferase family protein
Probab=99.19 E-value=8.5e-11 Score=96.18 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=67.0
Q ss_pred cEEEEeChhhHHHHHhhc--cEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHH-hCCCEEE--------e
Q 033044 19 AVDCFTFSSSIADHLSSA--SLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELA-DRKHLYC--------A 87 (128)
Q Consensus 19 ~~~v~~f~~~~~~~~~~a--dlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~-~~g~~~~--------~ 87 (128)
...+.+|.|+ .++++.+ +++|||||.||++|++++|+|+|.+|.. .||..||+++. +.|+++. .
T Consensus 313 g~vv~~w~PQ-~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~----~dQ~~na~~~~~~~g~g~~~~~~~~~~~ 387 (446)
T PLN00414 313 GIVWEGWVEQ-PLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQL----ADQVLITRLLTEELEVSVKVQREDSGWF 387 (446)
T ss_pred CeEEeccCCH-HHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcc----cchHHHHHHHHHHhCeEEEeccccCCcc
Confidence 4566799998 5899777 6799999999999999999999999996 78999999996 5688854 3
Q ss_pred ChHHHHHHHHhcch
Q 033044 88 HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ~~~~l~~~i~~l~~ 101 (128)
+.+++++++++++.
T Consensus 388 ~~~~i~~~v~~~m~ 401 (446)
T PLN00414 388 SKESLRDTVKSVMD 401 (446)
T ss_pred CHHHHHHHHHHHhc
Confidence 67889999998874
No 38
>PLN00164 glucosyltransferase; Provisional
Probab=99.17 E-value=8.9e-11 Score=96.81 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=67.0
Q ss_pred cEEEEeChhhHHHHHhhcc--EEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEEe--------
Q 033044 19 AVDCFTFSSSIADHLSSAS--LVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD-RKHLYCA-------- 87 (128)
Q Consensus 19 ~~~v~~f~~~~~~~~~~ad--lvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~-~g~~~~~-------- 87 (128)
.+.+.+|.|+ .+++..++ ++|||||.||++|++++|+|+|.+|.. .||..||+++.+ .|+++.+
T Consensus 340 g~~v~~w~PQ-~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~----~DQ~~Na~~~~~~~gvG~~~~~~~~~~~ 414 (480)
T PLN00164 340 GLVWPTWAPQ-KEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLY----AEQHLNAFELVADMGVAVAMKVDRKRDN 414 (480)
T ss_pred CeEEeecCCH-HHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcc----ccchhHHHHHHHHhCeEEEeccccccCC
Confidence 4677799998 68888877 799999999999999999999999996 789999998865 6888643
Q ss_pred --ChHHHHHHHHhcch
Q 033044 88 --HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 --~~~~l~~~i~~l~~ 101 (128)
+.+++.++|++++.
T Consensus 415 ~~~~e~l~~av~~vm~ 430 (480)
T PLN00164 415 FVEAAELERAVRSLMG 430 (480)
T ss_pred cCcHHHHHHHHHHHhc
Confidence 56889999988863
No 39
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.15 E-value=3.2e-10 Score=87.97 Aligned_cols=73 Identities=26% Similarity=0.286 Sum_probs=63.5
Q ss_pred hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChHHHHHHHHhcch
Q 033044 28 SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQSLHQVIVGMDL 101 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~~l~~~i~~l~~ 101 (128)
++.++|+.||++|+++|.+|+.|++++|+|+|++|.+... .+|..+++.+.+.+.++.+ +++.|.+++.+++.
T Consensus 243 ~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~-~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 243 NMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAA-DDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCc-cchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 7999999999999999988999999999999999876543 4688999999998888664 38899999988763
No 40
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.15 E-value=9.1e-11 Score=96.57 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=64.4
Q ss_pred EEEeChhhHHHHHhh--ccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHH-HHhCCCEEE-----------
Q 033044 21 DCFTFSSSIADHLSS--ASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEE-LADRKHLYC----------- 86 (128)
Q Consensus 21 ~v~~f~~~~~~~~~~--adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~-l~~~g~~~~----------- 86 (128)
.+.+|.|+ .++++. ++++|||||.||++|++++|+|+|.+|.. .+|..||++ +++.|+++.
T Consensus 343 ~v~~w~PQ-~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~----~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~ 417 (475)
T PLN02167 343 LVCGWAPQ-VEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY----AEQQLNAFTMVKELGLAVELRLDYVSAYGE 417 (475)
T ss_pred eeeccCCH-HHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc----ccchhhHHHHHHHhCeeEEeecccccccCC
Confidence 57799998 688877 55899999999999999999999999996 789999986 567788853
Q ss_pred -eChHHHHHHHHhcch
Q 033044 87 -AHPQSLHQVIVGMDL 101 (128)
Q Consensus 87 -~~~~~l~~~i~~l~~ 101 (128)
.+.+++.++|++++.
T Consensus 418 ~~~~~~l~~av~~~m~ 433 (475)
T PLN02167 418 IVKADEIAGAVRSLMD 433 (475)
T ss_pred cccHHHHHHHHHHHhc
Confidence 267788888888864
No 41
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.11 E-value=1.9e-10 Score=93.71 Aligned_cols=78 Identities=17% Similarity=0.078 Sum_probs=62.8
Q ss_pred ccEEEEeChhhHHHH--HhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChH
Q 033044 18 LAVDCFTFSSSIADH--LSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQ 90 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~--~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~ 90 (128)
.++...+|.|+.+.+ -++-.++|||||.||++|++++|+|+|.+|.. .+|..||++++++|.+.+. +..
T Consensus 335 ~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf----~DQ~~Na~~i~~~g~~~v~~~~~~~~~ 410 (496)
T KOG1192|consen 335 GNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLF----GDQPLNARLLVRHGGGGVLDKRDLVSE 410 (496)
T ss_pred CceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCcc----ccchhHHHHHHhCCCEEEEehhhcCcH
Confidence 368888999996544 44567999999999999999999999999997 7899999999999998764 222
Q ss_pred HHHHHHHhc
Q 033044 91 SLHQVIVGM 99 (128)
Q Consensus 91 ~l~~~i~~l 99 (128)
.+.+++.++
T Consensus 411 ~~~~~~~~i 419 (496)
T KOG1192|consen 411 ELLEAIKEI 419 (496)
T ss_pred HHHHHHHHH
Confidence 245555554
No 42
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.09 E-value=6.9e-11 Score=94.73 Aligned_cols=81 Identities=15% Similarity=0.171 Sum_probs=68.0
Q ss_pred EEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE----eCCCCCCch-----HHHHHHHHHhCCCEEE-----
Q 033044 21 DCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV----VNEDLMDNH-----QSELAEELADRKHLYC----- 86 (128)
Q Consensus 21 ~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v----P~~~~~~~~-----Q~~nA~~l~~~g~~~~----- 86 (128)
++..|..++.++|+.||++|+++|+.|+ |++++|+|+|++ |+++.+..+ |..|+..+.+++++..
T Consensus 253 ~v~~~~~~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~ 331 (385)
T TIGR00215 253 QLHLIDGDARKAMFAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEE 331 (385)
T ss_pred cEEEECchHHHHHHhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCC
Confidence 4444555789999999999999999888 999999999999 887666666 8889999999998844
Q ss_pred eChHHHHHHHHhcchh
Q 033044 87 AHPQSLHQVIVGMDLK 102 (128)
Q Consensus 87 ~~~~~l~~~i~~l~~~ 102 (128)
.+++.|.+.+.+++..
T Consensus 332 ~~~~~l~~~~~~ll~~ 347 (385)
T TIGR00215 332 CTPHPLAIALLLLLEN 347 (385)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3789999999888753
No 43
>PLN02534 UDP-glycosyltransferase
Probab=98.99 E-value=1.3e-09 Score=90.30 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=67.2
Q ss_pred cccEEEEeChhhHHHHHhhccE--EEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC-CCEE--------
Q 033044 17 LLAVDCFTFSSSIADHLSSASL--VISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR-KHLY-------- 85 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adl--vIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~-g~~~-------- 85 (128)
+.++.+.+|.++ .++++.+++ +|||||.+|++|++++|+|+|.+|.. .+|..||+++.+. |.|+
T Consensus 343 ~~g~~v~~w~pq-~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~----~dq~~na~~~~e~~~vGv~~~~~~~~ 417 (491)
T PLN02534 343 GRGLLIKGWAPQ-VLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLF----AEQFLNEKLIVEVLRIGVRVGVEVPV 417 (491)
T ss_pred cCCeeccCCCCH-HHHhcCCccceEEecCccHHHHHHHHcCCCEEecccc----ccHHHHHHHHHHhhcceEEecccccc
Confidence 346778899998 689999887 99999999999999999999999996 6899999999843 4432
Q ss_pred ----------EeChHHHHHHHHhcch
Q 033044 86 ----------CAHPQSLHQVIVGMDL 101 (128)
Q Consensus 86 ----------~~~~~~l~~~i~~l~~ 101 (128)
..+.+++.++|++++.
T Consensus 418 ~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 418 RWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred cccccccccCccCHHHHHHHHHHHhc
Confidence 2467889999988873
No 44
>PLN03015 UDP-glucosyl transferase
Probab=98.98 E-value=1.9e-09 Score=88.83 Aligned_cols=76 Identities=18% Similarity=0.159 Sum_probs=65.0
Q ss_pred EEEEeChhhHHHHHhhcc--EEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHH-HhCCCEEE---------e
Q 033044 20 VDCFTFSSSIADHLSSAS--LVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEEL-ADRKHLYC---------A 87 (128)
Q Consensus 20 ~~v~~f~~~~~~~~~~ad--lvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l-~~~g~~~~---------~ 87 (128)
+.+.+|.|+ .++++... .+|||||.+|++|++++|+|+|.+|.. .+|..||+++ +..|+++. +
T Consensus 337 l~v~~W~PQ-~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~----~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQ-VEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLY----AEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCH-HHHhccCccCeEEecCCchhHHHHHHcCCCEEecccc----cchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 677899998 47888765 599999999999999999999999996 7899999999 45677743 3
Q ss_pred ChHHHHHHHHhcc
Q 033044 88 HPQSLHQVIVGMD 100 (128)
Q Consensus 88 ~~~~l~~~i~~l~ 100 (128)
+.+++.++|++++
T Consensus 412 ~~e~i~~~v~~lm 424 (470)
T PLN03015 412 GREEVASLVRKIV 424 (470)
T ss_pred CHHHHHHHHHHHH
Confidence 6778888998887
No 45
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.94 E-value=8.7e-10 Score=86.88 Aligned_cols=98 Identities=15% Similarity=0.231 Sum_probs=68.3
Q ss_pred ChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeC----CCCCCchHHHH-----HHHHHhCCCEE--E---eChH
Q 033044 25 FSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVN----EDLMDNHQSEL-----AEELADRKHLY--C---AHPQ 90 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~----~~~~~~~Q~~n-----A~~l~~~g~~~--~---~~~~ 90 (128)
+.+++.++|+.||++|+.+|.+|+ |++++|+|+|++|. ++.+++||..| ++.+.+.+.+. . .+++
T Consensus 251 ~~~~~~~~~~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 329 (380)
T PRK00025 251 LDGQKREAMAAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPE 329 (380)
T ss_pred EcccHHHHHHhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHH
Confidence 446799999999999999999877 99999999999954 43445566543 34444444331 1 3788
Q ss_pred HHHHHHHhcchh---------c----CCCCCCCChHHHHHHHHHhc
Q 033044 91 SLHQVIVGMDLK---------S----LLPYQPGDATPVAKLINRFL 123 (128)
Q Consensus 91 ~l~~~i~~l~~~---------~----~~~~~~~~~~~i~~~i~~~~ 123 (128)
.|.+.+.+++++ . .+...+++++.+++.|.+.+
T Consensus 330 ~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 330 KLARALLPLLADGARRQALLEGFTELHQQLRCGADERAAQAVLELL 375 (380)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 898888877531 0 01114567888888887764
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=2.6e-09 Score=82.51 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=68.0
Q ss_pred CcccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe----ChHH
Q 033044 16 GLLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA----HPQS 91 (128)
Q Consensus 16 ~~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~----~~~~ 91 (128)
..+++..+-+.++|+++|..||+.|+.||. |++|++..|+|.+++|.. .+|...|+.++..|+.... ..+.
T Consensus 208 ~~~~i~~~~~~~dma~LMke~d~aI~AaGs-tlyEa~~lgvP~l~l~~a----~NQ~~~a~~f~~lg~~~~l~~~l~~~~ 282 (318)
T COG3980 208 KYPNINLYIDTNDMAELMKEADLAISAAGS-TLYEALLLGVPSLVLPLA----ENQIATAKEFEALGIIKQLGYHLKDLA 282 (318)
T ss_pred hCCCeeeEecchhHHHHHHhcchheeccch-HHHHHHHhcCCceEEeee----ccHHHHHHHHHhcCchhhccCCCchHH
Confidence 357899999999999999999999999995 999999999999999986 5799999999999998653 4455
Q ss_pred HHHHHHhcc
Q 033044 92 LHQVIVGMD 100 (128)
Q Consensus 92 l~~~i~~l~ 100 (128)
+...+.++.
T Consensus 283 ~~~~~~~i~ 291 (318)
T COG3980 283 KDYEILQIQ 291 (318)
T ss_pred HHHHHHHhh
Confidence 555555554
No 47
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.53 E-value=9.5e-08 Score=76.12 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=65.3
Q ss_pred ChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC---CCE-EE--------------
Q 033044 25 FSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR---KHL-YC-------------- 86 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~---g~~-~~-------------- 86 (128)
+++++.++|+.||++|+.+|+.|+ |++.+|+|+|+. +. ++.+|..+|+++.+. |+. ++
T Consensus 225 ~~~~~~~~m~~aDlal~~SGT~TL-E~al~g~P~Vv~-Yk--~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEll 300 (347)
T PRK14089 225 ISYDTHKALLEAEFAFICSGTATL-EAALIGTPFVLA-YK--AKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELL 300 (347)
T ss_pred EeccHHHHHHhhhHHHhcCcHHHH-HHHHhCCCEEEE-Ee--CCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhh
Confidence 345778999999999999999888 999999999994 32 368999999999943 332 11
Q ss_pred ---eChHHHHHHHHhcchh--------cCCCCCCCChHHHHHHHHH
Q 033044 87 ---AHPQSLHQVIVGMDLK--------SLLPYQPGDATPVAKLINR 121 (128)
Q Consensus 87 ---~~~~~l~~~i~~l~~~--------~~~~~~~~~~~~i~~~i~~ 121 (128)
.+++.+.+.+.+...+ ..+...+++++.+++.|.+
T Consensus 301 Q~~~t~~~la~~i~~~~~~~~~~~~~~l~~~l~~~a~~~~A~~i~~ 346 (347)
T PRK14089 301 QEFVTVENLLKAYKEMDREKFFKKSKELREYLKHGSAKNVAKILKE 346 (347)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 2677777777553111 1111123667777777765
No 48
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.47 E-value=5.9e-07 Score=70.10 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=66.6
Q ss_pred ccEEEEeC--hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--ChHHHH
Q 033044 18 LAVDCFTF--SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA--HPQSLH 93 (128)
Q Consensus 18 ~~~~v~~f--~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~--~~~~l~ 93 (128)
.++++.++ .++|..+|..||++|+.+| |.+.|++++|+|+|.++.. |. +..+.+.|.++.. +++.+.
T Consensus 258 ~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~------~~--~~~~~~~g~~~~~~~~~~~i~ 328 (363)
T cd03786 258 PNVLLISPLGYLYFLLLLKNADLVLTDSG-GIQEEASFLGVPVLNLRDR------TE--RPETVESGTNVLVGTDPEAIL 328 (363)
T ss_pred CCEEEECCcCHHHHHHHHHcCcEEEEcCc-cHHhhhhhcCCCEEeeCCC------Cc--cchhhheeeEEecCCCHHHHH
Confidence 46777644 5679999999999999999 7788999999999998632 32 3356677877654 578999
Q ss_pred HHHHhcchhc-----C--CCC-CCCChHHHHHHH
Q 033044 94 QVIVGMDLKS-----L--LPY-QPGDATPVAKLI 119 (128)
Q Consensus 94 ~~i~~l~~~~-----~--~~~-~~~~~~~i~~~i 119 (128)
+++.+++... . ++| ..+++++|+++|
T Consensus 329 ~~i~~ll~~~~~~~~~~~~~~~~~~a~~~I~~~l 362 (363)
T cd03786 329 AAIEKLLSDEFAYSLMSINPYGDGNASERIVEIL 362 (363)
T ss_pred HHHHHHhcCchhhhcCCCCCCCCCHHHHHHHHHh
Confidence 9998886421 1 222 234566777665
No 49
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.16 E-value=1.2e-05 Score=64.58 Aligned_cols=79 Identities=14% Similarity=0.078 Sum_probs=61.5
Q ss_pred cEEEEeChhhHHHHHhhccEEEec-----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChHHH
Q 033044 19 AVDCFTFSSSIADHLSSASLVISH-----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-AHPQSL 92 (128)
Q Consensus 19 ~~~v~~f~~~~~~~~~~adlvIth-----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~~~~~l 92 (128)
++.+.++..+|..+|+.||+++.. +|..++.|++++|+|+|.-|.. ..+.+..+.+.+.|+++. .++++|
T Consensus 303 ~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~----~~~~e~~~~~~~~g~~~~~~d~~~L 378 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHT----FNFKEIFERLLQAGAAIQVEDAEDL 378 (425)
T ss_pred cEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCc----cCHHHHHHHHHHCCCeEEECCHHHH
Confidence 456666778899999999985431 3445799999999999998875 346677777777888765 488999
Q ss_pred HHHHHhcch
Q 033044 93 HQVIVGMDL 101 (128)
Q Consensus 93 ~~~i~~l~~ 101 (128)
.++|.++++
T Consensus 379 a~~l~~ll~ 387 (425)
T PRK05749 379 AKAVTYLLT 387 (425)
T ss_pred HHHHHHHhc
Confidence 999988753
No 50
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.08 E-value=2.5e-05 Score=58.70 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=58.7
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---Ch
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---HP 89 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~~ 89 (128)
..++++.++.+++.++|++||++|.-+. .+++.|++++|+|+|.-+.+ + ..+.+.+.+.+++. ++
T Consensus 245 ~~~v~~~g~~~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~----~~~~i~~~~~g~~~~~~~~ 316 (359)
T cd03808 245 EGRVEFLGFRDDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVP----G----CREAVIDGVNGFLVPPGDA 316 (359)
T ss_pred cceEEEeeccccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCC----C----chhhhhcCcceEEECCCCH
Confidence 4578999998899999999999997653 57999999999999997664 2 22344444455443 68
Q ss_pred HHHHHHHHhcch
Q 033044 90 QSLHQVIVGMDL 101 (128)
Q Consensus 90 ~~l~~~i~~l~~ 101 (128)
+++.++|.+++.
T Consensus 317 ~~~~~~i~~l~~ 328 (359)
T cd03808 317 EALADAIERLIE 328 (359)
T ss_pred HHHHHHHHHHHh
Confidence 889999888753
No 51
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.07 E-value=4.9e-05 Score=59.90 Aligned_cols=95 Identities=12% Similarity=0.178 Sum_probs=66.0
Q ss_pred ccEEEEeChh--hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--ChHHHH
Q 033044 18 LAVDCFTFSS--SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA--HPQSLH 93 (128)
Q Consensus 18 ~~~~v~~f~~--~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~--~~~~l~ 93 (128)
.++++.++.. ++..+|+.||++|+.+|. .+.|++++|+|+|.++... +.|+ +.+.|.++.+ +++++.
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad~vv~~Sg~-~~~EA~a~g~PvI~~~~~~---~~~e-----~~~~g~~~lv~~d~~~i~ 325 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSHLILTDSGG-VQEEAPSLGKPVLVLRDTT---ERPE-----TVEAGTNKLVGTDKENIT 325 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCEEEECChh-HHHHHHHcCCCEEECCCCC---CChH-----HHhcCceEEeCCCHHHHH
Confidence 3677776553 467889999999999985 5799999999999986531 2232 2334555443 789999
Q ss_pred HHHHhcchh---------cCCCC-CCCChHHHHHHHHH
Q 033044 94 QVIVGMDLK---------SLLPY-QPGDATPVAKLINR 121 (128)
Q Consensus 94 ~~i~~l~~~---------~~~~~-~~~~~~~i~~~i~~ 121 (128)
+++.++++. ..+++ ..+++++|++.|.+
T Consensus 326 ~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 326 KAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEELLN 363 (365)
T ss_pred HHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHHHh
Confidence 999887631 12233 33567888888875
No 52
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.00 E-value=4.4e-05 Score=58.03 Aligned_cols=77 Identities=13% Similarity=0.186 Sum_probs=57.8
Q ss_pred cccEEEEeCh--hhHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---
Q 033044 17 LLAVDCFTFS--SSIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA--- 87 (128)
Q Consensus 17 ~~~~~v~~f~--~~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~--- 87 (128)
..++++.+++ +++.++|+.||++|..+. .+++.|++++|+|+|.-+.+ + +.+.+.+.+.++..
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~----~~~~i~~~~~g~~~~~~ 317 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAG----G----PADIVTDGENGLLVEPG 317 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCC----C----chhhhcCCcceEEcCCC
Confidence 4578899975 469999999999997764 37899999999999998865 2 23344545566553
Q ss_pred ChHHHHHHHHhcch
Q 033044 88 HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ~~~~l~~~i~~l~~ 101 (128)
+.+++.+.|.++..
T Consensus 318 ~~~~l~~~i~~l~~ 331 (364)
T cd03814 318 DAEAFAAALAALLA 331 (364)
T ss_pred CHHHHHHHHHHHHc
Confidence 56778888888753
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.98 E-value=4.1e-05 Score=57.29 Aligned_cols=77 Identities=14% Similarity=0.177 Sum_probs=58.2
Q ss_pred cccEEEEeCh--hhHHHHHhhccEEEec----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---
Q 033044 17 LLAVDCFTFS--SSIADHLSSASLVISH----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA--- 87 (128)
Q Consensus 17 ~~~~~v~~f~--~~~~~~~~~adlvIth----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~--- 87 (128)
..++++.+++ +++.++|+.||++|.- +..+++.|++++|+|+|..+.+. ..+.+.+.+.++..
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~--------~~~~~~~~~~g~~~~~~ 326 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGG--------IPEVVEDGETGLLVPPG 326 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCC--------hhHHhcCCcceEEeCCC
Confidence 4578999999 7899999999999953 44579999999999999887641 33444444555443
Q ss_pred ChHHHHHHHHhcch
Q 033044 88 HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ~~~~l~~~i~~l~~ 101 (128)
+++++.+.|.++..
T Consensus 327 ~~~~l~~~i~~~~~ 340 (374)
T cd03801 327 DPEALAEAILRLLD 340 (374)
T ss_pred CHHHHHHHHHHHHc
Confidence 57889999888743
No 54
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.98 E-value=3.3e-05 Score=58.52 Aligned_cols=77 Identities=17% Similarity=0.097 Sum_probs=57.9
Q ss_pred cccEEEEeCh--hhHHHHHhhccEEEe-----cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--
Q 033044 17 LLAVDCFTFS--SSIADHLSSASLVIS-----HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-- 87 (128)
Q Consensus 17 ~~~~~v~~f~--~~~~~~~~~adlvIt-----haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-- 87 (128)
..++++.+|+ +++.++|++||++|. -+...++.|++++|+|+|.-+.+ . ..+.+.+.+.++..
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~----~~e~i~~~~~g~~~~~ 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIG----G----MAELVRDGVNGLLFPP 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC----C----HHHHhcCCCcEEEECC
Confidence 4688999998 679999999999994 23445899999999999987654 2 33445554455553
Q ss_pred -ChHHHHHHHHhcch
Q 033044 88 -HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 -~~~~l~~~i~~l~~ 101 (128)
+.+++.+++.++.+
T Consensus 314 ~d~~~l~~~i~~l~~ 328 (359)
T cd03823 314 GDAEDLAAALERLID 328 (359)
T ss_pred CCHHHHHHHHHHHHh
Confidence 57889999888864
No 55
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.94 E-value=5.2e-05 Score=56.66 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=57.3
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCC-CEEEe---C
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRK-HLYCA---H 88 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g-~~~~~---~ 88 (128)
..++.+.++.+++.++|++||++|.-+. ..++.|++++|+|+|.-+.. ..+. .+.+.+ .++.. +
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~----~~~~~~~~g~~~~~~~ 305 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCP----TGPS----EIIEDGVNGLLVPNGD 305 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCC----CchH----hhhccCcceEEeCCCC
Confidence 4578888888889999999999998762 46899999999999987654 1222 233343 55443 6
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
++++.++|.++++
T Consensus 306 ~~~~~~~i~~ll~ 318 (348)
T cd03820 306 VEALAEALLRLME 318 (348)
T ss_pred HHHHHHHHHHHHc
Confidence 6889999988854
No 56
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.93 E-value=0.00014 Score=50.85 Aligned_cols=79 Identities=14% Similarity=0.097 Sum_probs=58.6
Q ss_pred CcccEEEEeChh--hHHHHHhhccEEEec----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--
Q 033044 16 GLLAVDCFTFSS--SIADHLSSASLVISH----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-- 87 (128)
Q Consensus 16 ~~~~~~v~~f~~--~~~~~~~~adlvIth----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-- 87 (128)
...+++++++.+ ++.++++.||++|+- +...++.|++++|+|+|+-..+ .+.+.+.....++..
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~--------~~~e~~~~~~~g~~~~~ 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIG--------GNNEIINDGVNGFLFDP 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESST--------HHHHHSGTTTSEEEEST
T ss_pred ccccccccccccccccccccccceeccccccccccccccccccccccceeecccc--------CCceeeccccceEEeCC
Confidence 345789999997 899999999999987 5667999999999999976543 234455555556554
Q ss_pred -ChHHHHHHHHhcchh
Q 033044 88 -HPQSLHQVIVGMDLK 102 (128)
Q Consensus 88 -~~~~l~~~i~~l~~~ 102 (128)
+.+++.++|.+++..
T Consensus 143 ~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 143 NDIEELADAIEKLLND 158 (172)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCC
Confidence 668999999888753
No 57
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.90 E-value=5.8e-05 Score=56.91 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=56.6
Q ss_pred ccEEEEeChhhHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChHHH
Q 033044 18 LAVDCFTFSSSIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-AHPQSL 92 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~~~~~l 92 (128)
.++.+.++.+++..+|+.||++|..+. .+++.|++++|+|+|+...+ + ..+.+.+.|..+. .+++++
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~----~~e~~~~~g~~~~~~~~~~l 322 (365)
T cd03807 251 DKVILLGERSDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVG----D----NAELVGDTGFLVPPGDPEAL 322 (365)
T ss_pred ceEEEccccccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCC----C----hHHHhhcCCEEeCCCCHHHH
Confidence 467888888899999999999997654 37999999999999987654 2 2233333444433 278889
Q ss_pred HHHHHhcch
Q 033044 93 HQVIVGMDL 101 (128)
Q Consensus 93 ~~~i~~l~~ 101 (128)
.++|.++++
T Consensus 323 ~~~i~~l~~ 331 (365)
T cd03807 323 AEAIEALLA 331 (365)
T ss_pred HHHHHHHHh
Confidence 999888864
No 58
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.84 E-value=5.5e-05 Score=57.98 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=58.2
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChHH
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-AHPQS 91 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~~~~~ 91 (128)
..++++.++.+++.++|+.||++|.-+. ..++.|++++|+|+|+-..+ ...+.+.+.|..+. .++++
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~--------~~~e~i~~~g~~~~~~~~~~ 315 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAG--------GVREVVGDSGLIVPISDPEA 315 (360)
T ss_pred CCcEEEecccccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecCC--------ChhhEecCCceEeCCCCHHH
Confidence 3578999999999999999999998764 57899999999999986543 12333444454433 37888
Q ss_pred HHHHHHhcc
Q 033044 92 LHQVIVGMD 100 (128)
Q Consensus 92 l~~~i~~l~ 100 (128)
+.++|.+++
T Consensus 316 ~~~~i~~ll 324 (360)
T cd04951 316 LANKIDEIL 324 (360)
T ss_pred HHHHHHHHH
Confidence 999998885
No 59
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.83 E-value=5.2e-05 Score=51.12 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=49.5
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecC-----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eCh
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHA-----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC--AHP 89 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvItha-----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~ 89 (128)
..++++.++++++.+++++||++|.-. -.+++.|++++|+|+|.-+.. .....+..+.+.+ -++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~---------~~~~~~~~~~~~~~~~~~ 122 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG---------AEGIVEEDGCGVLVANDP 122 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH---------CHCHS---SEEEE-TT-H
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc---------hhhheeecCCeEEECCCH
Confidence 458999999999999999999988732 248999999999999997641 1122222344433 388
Q ss_pred HHHHHHHHhcch
Q 033044 90 QSLHQVIVGMDL 101 (128)
Q Consensus 90 ~~l~~~i~~l~~ 101 (128)
+++.++|.++..
T Consensus 123 ~~l~~~i~~l~~ 134 (135)
T PF13692_consen 123 EELAEAIERLLN 134 (135)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 60
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.79 E-value=0.00027 Score=56.28 Aligned_cols=88 Identities=20% Similarity=0.179 Sum_probs=61.9
Q ss_pred HHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChHHHHHHHHhcchhcCCCC
Q 033044 29 IADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-AHPQSLHQVIVGMDLKSLLPY 107 (128)
Q Consensus 29 ~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~~~~~l~~~i~~l~~~~~~~~ 107 (128)
..+++..||++|+-|| +...||+.+|+|+|.+ ++ +.-...-+++.++|.... .+++++.+.+.+......+..
T Consensus 242 ~~~Ll~~a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~----g~~~~vd~~L~~~Gll~~~~~~~ei~~~v~~~~~~~~~~~ 315 (335)
T PF04007_consen 242 GLDLLYYADLVIGGGG-TMAREAALLGTPAISC-FP----GKLLAVDKYLIEKGLLYHSTDPDEIVEYVRKNLGKRKKIR 315 (335)
T ss_pred HHHHHHhcCEEEeCCc-HHHHHHHHhCCCEEEe-cC----CcchhHHHHHHHCCCeEecCCHHHHHHHHHHhhhcccchh
Confidence 4589999999999999 6899999999999987 33 222345577888998655 488888887776654333222
Q ss_pred C---CCChHHHHHHHHHh
Q 033044 108 Q---PGDATPVAKLINRF 122 (128)
Q Consensus 108 ~---~~~~~~i~~~i~~~ 122 (128)
. .+-.+.|.+.|.+.
T Consensus 316 ~~~~~d~~~~i~~~i~~~ 333 (335)
T PF04007_consen 316 EKKSEDPTDLIIEEIEEY 333 (335)
T ss_pred hhhccCHHHHHHHHHHHh
Confidence 1 33455666666554
No 61
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.74 E-value=0.0002 Score=55.00 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=55.7
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecC-----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---C
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHA-----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---H 88 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvItha-----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~ 88 (128)
..++++.+|.+++.++|+.||++|.-+ ...++.|++++|+|+|.-... +. .+.+.+.+.++.. +
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~----~e~i~~~~~g~~~~~~~ 316 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GA----RETVRPGETGLLVPPGD 316 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----Cc----HHHHhCCCceEEeCCCC
Confidence 357999999989999999999999755 236999999999999987543 22 2333333345443 7
Q ss_pred hHHHHHHHHhcc
Q 033044 89 PQSLHQVIVGMD 100 (128)
Q Consensus 89 ~~~l~~~i~~l~ 100 (128)
++.+.++|.+++
T Consensus 317 ~~~l~~~i~~~~ 328 (355)
T cd03819 317 AEALAQALDQIL 328 (355)
T ss_pred HHHHHHHHHHHH
Confidence 888888886543
No 62
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.73 E-value=0.00013 Score=55.18 Aligned_cols=76 Identities=14% Similarity=0.049 Sum_probs=56.3
Q ss_pred cccEEEEeChh--hHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--C
Q 033044 17 LLAVDCFTFSS--SIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA--H 88 (128)
Q Consensus 17 ~~~~~v~~f~~--~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~--~ 88 (128)
..++++.+|++ ++..+|..||++|.-+- ..++.|++++|+|+|.-+.+ +. .+.+.. +.+++. +
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~----~~~~~~-~~~~~~~~~ 331 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----PW----QELIEY-GCGWVVDDD 331 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CH----HHHhhc-CceEEeCCC
Confidence 35789999987 79999999999987553 46899999999999998654 22 222223 455443 5
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
.+++.++|.++.+
T Consensus 332 ~~~~~~~i~~l~~ 344 (375)
T cd03821 332 VDALAAALRRALE 344 (375)
T ss_pred hHHHHHHHHHHHh
Confidence 6888888888864
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.72 E-value=0.00026 Score=54.17 Aligned_cols=79 Identities=18% Similarity=0.098 Sum_probs=56.5
Q ss_pred CcccEEEEeChhh--HHHHHhhccEEEec------CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe
Q 033044 16 GLLAVDCFTFSSS--IADHLSSASLVISH------AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA 87 (128)
Q Consensus 16 ~~~~~~v~~f~~~--~~~~~~~adlvIth------aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~ 87 (128)
...++++.+|+++ +.++++.||++|.- +...++.|++++|+|+|.-..+ ........ ..+.++..
T Consensus 242 ~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~----~~~~~i~~---~~~~g~~~ 314 (357)
T cd03795 242 LLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIG----TGGSYVNL---HGVTGLVV 314 (357)
T ss_pred CcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCC----CchhHHhh---CCCceEEe
Confidence 3468999999864 88999999998832 2245899999999999997654 22222222 23444443
Q ss_pred ---ChHHHHHHHHhcch
Q 033044 88 ---HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ---~~~~l~~~i~~l~~ 101 (128)
+++++.++|.+++.
T Consensus 315 ~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 315 PPGDPAALAEAIRRLLE 331 (357)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 68899999998865
No 64
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.69 E-value=0.00017 Score=55.84 Aligned_cols=77 Identities=10% Similarity=0.113 Sum_probs=57.6
Q ss_pred cccEEEEeCh--hhHHHHHhhccEEEecC----------chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCE
Q 033044 17 LLAVDCFTFS--SSIADHLSSASLVISHA----------GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHL 84 (128)
Q Consensus 17 ~~~~~v~~f~--~~~~~~~~~adlvItha----------G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~ 84 (128)
..++++.+++ +++.++|+.||++|.-+ -..++.|++++|+|+|.-+... +++.+.+.+.+
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~--------~~e~i~~~~~g 315 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG--------IPEAVEDGETG 315 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC--------chhheecCCee
Confidence 4578888887 45999999999988532 2579999999999999887641 34444455555
Q ss_pred EEe---ChHHHHHHHHhcch
Q 033044 85 YCA---HPQSLHQVIVGMDL 101 (128)
Q Consensus 85 ~~~---~~~~l~~~i~~l~~ 101 (128)
++. +++++.++|.++.+
T Consensus 316 ~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 316 LLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred EEECCCCHHHHHHHHHHHHc
Confidence 544 78899999988864
No 65
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.68 E-value=0.00027 Score=53.18 Aligned_cols=78 Identities=13% Similarity=0.169 Sum_probs=57.9
Q ss_pred cccEEEEeChh--hHHHHHhhccEEEec----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---
Q 033044 17 LLAVDCFTFSS--SIADHLSSASLVISH----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA--- 87 (128)
Q Consensus 17 ~~~~~v~~f~~--~~~~~~~~adlvIth----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~--- 87 (128)
..++++.++++ ++.+++.+||++|.- +..+++.|++++|+|+|+-+.. + ..+.+.+.+.++..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~----~~~~~~~~~~g~~~~~~ 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG----G----IPEIITDGENGLLVPPG 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC----C----hHHHhcCCcceeEECCC
Confidence 45789999985 588999999999943 4567899999999999987654 2 23345555555443
Q ss_pred ChHHHHHHHHhcchh
Q 033044 88 HPQSLHQVIVGMDLK 102 (128)
Q Consensus 88 ~~~~l~~~i~~l~~~ 102 (128)
+++++.++|.+++..
T Consensus 330 ~~~~l~~~i~~~~~~ 344 (377)
T cd03798 330 DPEALAEAILRLLAD 344 (377)
T ss_pred CHHHHHHHHHHHhcC
Confidence 788888888888653
No 66
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.65 E-value=0.00025 Score=54.90 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=56.3
Q ss_pred ccEEEEeChhhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChH
Q 033044 18 LAVDCFTFSSSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---HPQ 90 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~~~ 90 (128)
.++++.++.+++.++|+.||++|.-+ ...++.|++++|+|+|.-..+. .++.+.+...++.. +.+
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~--------~~e~i~~~~~G~~~~~~~~~ 324 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGG--------IPEVVKHGETGFLVDVGDVE 324 (371)
T ss_pred ceEEEecCcccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCC--------chhhhcCCCceEEcCCCCHH
Confidence 46899999999999999999999543 3469999999999999976541 23344443344443 678
Q ss_pred HHHHHHHhcch
Q 033044 91 SLHQVIVGMDL 101 (128)
Q Consensus 91 ~l~~~i~~l~~ 101 (128)
++.+++.+++.
T Consensus 325 ~l~~~i~~l~~ 335 (371)
T cd04962 325 AMAEYALSLLE 335 (371)
T ss_pred HHHHHHHHHHh
Confidence 88888877753
No 67
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.62 E-value=0.00018 Score=54.52 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=54.6
Q ss_pred ccEEEEeChh--hHHHHHhhccEEEecCc---------hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 033044 18 LAVDCFTFSS--SIADHLSSASLVISHAG---------SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 18 ~~~~v~~f~~--~~~~~~~~adlvIthaG---------~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
.++++.++.+ ++.++|+.||++|.... .+++.|++++|+|+|..+.+. .+. .+...+.++.
T Consensus 275 ~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~----~~~----~~~~~~~g~~ 346 (394)
T cd03794 275 DNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGE----SAE----LVEEAGAGLV 346 (394)
T ss_pred CcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCC----chh----hhccCCcceE
Confidence 5788999874 68999999999985432 445899999999999998762 222 2222234433
Q ss_pred e---ChHHHHHHHHhcc
Q 033044 87 A---HPQSLHQVIVGMD 100 (128)
Q Consensus 87 ~---~~~~l~~~i~~l~ 100 (128)
. +++++.++|.+++
T Consensus 347 ~~~~~~~~l~~~i~~~~ 363 (394)
T cd03794 347 VPPGDPEALAAAILELL 363 (394)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 2 7889999998886
No 68
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.62 E-value=0.00029 Score=53.87 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=57.1
Q ss_pred cccEEEEeCh--hhHHHHHhhccEEEe----------cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCE
Q 033044 17 LLAVDCFTFS--SSIADHLSSASLVIS----------HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHL 84 (128)
Q Consensus 17 ~~~~~v~~f~--~~~~~~~~~adlvIt----------haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~ 84 (128)
..++++.+++ +++..++++||++|. -+...++.|++++|+|+|..+.+. ..+.+.+...+
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~--------~~~~i~~~~~g 306 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG--------IPELVEDGETG 306 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC--------cchhhhCCCce
Confidence 3578899998 579999999999998 344579999999999999876542 11233333355
Q ss_pred EEe---ChHHHHHHHHhcch
Q 033044 85 YCA---HPQSLHQVIVGMDL 101 (128)
Q Consensus 85 ~~~---~~~~l~~~i~~l~~ 101 (128)
+.. +.+++.++|.++..
T Consensus 307 ~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 307 LLVPPGDPEALADAIERLLD 326 (355)
T ss_pred EEeCCCCHHHHHHHHHHHHh
Confidence 443 68889999988764
No 69
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.62 E-value=0.00035 Score=53.69 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=57.2
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-e--Ch
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-A--HP 89 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~--~~ 89 (128)
..++.+.++.+++.++++.||++|.-+ -..+++|++++|+|+|.-..+ +. .+.+.. +.+++ . ++
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~----~~----~~~i~~-~~~~~~~~~~~ 318 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTI----TK----EVDLTD-LVKFLSLDESP 318 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCC----ch----hhhhcc-CccEEeCCCCH
Confidence 457889999889999999999999643 357999999999999987654 21 223333 33433 2 56
Q ss_pred HHHHHHHHhcch
Q 033044 90 QSLHQVIVGMDL 101 (128)
Q Consensus 90 ~~l~~~i~~l~~ 101 (128)
+++.++|.++++
T Consensus 319 ~~~a~~i~~l~~ 330 (358)
T cd03812 319 EIWAEEILKLKS 330 (358)
T ss_pred HHHHHHHHHHHh
Confidence 999999999975
No 70
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.60 E-value=0.00024 Score=53.81 Aligned_cols=77 Identities=17% Similarity=0.217 Sum_probs=55.8
Q ss_pred cccEEEEeCh--hhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeC--
Q 033044 17 LLAVDCFTFS--SSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAH-- 88 (128)
Q Consensus 17 ~~~~~v~~f~--~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~-- 88 (128)
..++++.+++ +++.++|+.||++|.-+ ...++.|++++|+|+|...... .++.+.+.+.++..+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~--------~~~~i~~~~~g~~~~~~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPG--------LPDLVADGENGFLFPPG 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCC--------hhhheecCceeEEeCCC
Confidence 3578899998 46999999999999543 3478999999999999876541 334455545555442
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
.+++.+++.++++
T Consensus 330 ~~~~~~~i~~l~~ 342 (374)
T cd03817 330 DEALAEALLRLLQ 342 (374)
T ss_pred CHHHHHHHHHHHh
Confidence 2278888887764
No 71
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.57 E-value=0.00033 Score=53.74 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=55.2
Q ss_pred cccEEEEeChh---hHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--
Q 033044 17 LLAVDCFTFSS---SIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-- 87 (128)
Q Consensus 17 ~~~~~v~~f~~---~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-- 87 (128)
..++.+.+|++ ++.++|+.||++|.-+. ..++.|++++|+|+|....+.. .+.+.+.+.++..
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~--------~e~~~~~~~g~~~~~ 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGI--------PDIVDHGVTGYLAKP 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCC--------hhheeCCCceEEeCC
Confidence 45688888887 58899999999999652 4799999999999998765421 1122233344332
Q ss_pred -ChHHHHHHHHhcch
Q 033044 88 -HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 -~~~~l~~~i~~l~~ 101 (128)
+++++.+++.+++.
T Consensus 315 ~~~~~~~~~l~~l~~ 329 (365)
T cd03825 315 GDPEDLAEGIEWLLA 329 (365)
T ss_pred CCHHHHHHHHHHHHh
Confidence 68888888888764
No 72
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.56 E-value=0.00041 Score=52.82 Aligned_cols=76 Identities=22% Similarity=0.236 Sum_probs=53.8
Q ss_pred cccEEEEeC-h--hhHHHHHhhccEEEec------CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe
Q 033044 17 LLAVDCFTF-S--SSIADHLSSASLVISH------AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA 87 (128)
Q Consensus 17 ~~~~~v~~f-~--~~~~~~~~~adlvIth------aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~ 87 (128)
..++++.+. + +++..+|+.||++|.- +-.+++.|++++|+|+|.-+.+. .+.+...+.+++.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~---------~~~i~~~~~g~~~ 316 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH---------AEEVLDGGTGLLV 316 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC---------hheeeeCCCcEEE
Confidence 357777755 4 4699999999999932 33468999999999999887652 1223334444443
Q ss_pred ---ChHHHHHHHHhcch
Q 033044 88 ---HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ---~~~~l~~~i~~l~~ 101 (128)
+.+++.++|.++.+
T Consensus 317 ~~~d~~~~~~~l~~l~~ 333 (366)
T cd03822 317 PPGDPAALAEAIRRLLA 333 (366)
T ss_pred cCCCHHHHHHHHHHHHc
Confidence 68889999888754
No 73
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.56 E-value=0.00038 Score=54.50 Aligned_cols=76 Identities=13% Similarity=0.038 Sum_probs=55.1
Q ss_pred ccEEEEeChhhHHHHHhhccEEEe--c--CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChH
Q 033044 18 LAVDCFTFSSSIADHLSSASLVIS--H--AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---HPQ 90 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvIt--h--aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~~~ 90 (128)
.++.+.++.+++.++|+.||++|. + +-..++.||+++|+|+|.-... + +.+.+.+...+... +++
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g----~~e~i~~~~~g~~~~~~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVG----G----NPELVQHGVTGALVPPGDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCC----C----cHHHhcCCCceEEeCCCCHH
Confidence 356677788899999999999994 2 3346999999999999997654 2 22333333344443 788
Q ss_pred HHHHHHHhcch
Q 033044 91 SLHQVIVGMDL 101 (128)
Q Consensus 91 ~l~~~i~~l~~ 101 (128)
++.++|.+++.
T Consensus 327 ~la~~i~~l~~ 337 (374)
T TIGR03088 327 ALARALQPYVS 337 (374)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 74
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.55 E-value=0.00077 Score=50.29 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=54.2
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---Ch
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---HP 89 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~~ 89 (128)
..++++.++.+++.++++.||++|.-+ ..+++.|++++|+|+|.-..+ ...+.+.+...+++. +.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~--------~~~e~i~~~~~g~~~~~~~~ 316 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP--------GPREILEDGENGLLVPVGDE 316 (353)
T ss_pred CccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC--------ChHHHhcCCCceEEECCCCH
Confidence 357889999999999999999999543 356899999999999987553 234556666666654 45
Q ss_pred HHHHHHHHhc
Q 033044 90 QSLHQVIVGM 99 (128)
Q Consensus 90 ~~l~~~i~~l 99 (128)
+.+.+.+..+
T Consensus 317 ~~~~~~~~~i 326 (353)
T cd03811 317 AALAAAALAL 326 (353)
T ss_pred HHHHHHHHHH
Confidence 6664334443
No 75
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.52 E-value=0.00015 Score=57.79 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=54.6
Q ss_pred cccEEEEeChhhHHHHHhhccEEE--ec--Cch-HHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eCh
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVI--SH--AGS-GSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC--AHP 89 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvI--th--aG~-~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~ 89 (128)
..++++.++++++..+++.||++| ++ .|. +.+.|++++|+|+|.-+.. ..... ...|.+++ .++
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~----~~~i~-----~~~~~g~lv~~~~ 349 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA----AEGID-----ALPGAELLVAADP 349 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCcc----ccccc-----ccCCcceEeCCCH
Confidence 357899999999999999999998 43 232 3699999999999998653 11110 11233333 488
Q ss_pred HHHHHHHHhcch
Q 033044 90 QSLHQVIVGMDL 101 (128)
Q Consensus 90 ~~l~~~i~~l~~ 101 (128)
+++.++|.++++
T Consensus 350 ~~la~ai~~ll~ 361 (397)
T TIGR03087 350 ADFAAAILALLA 361 (397)
T ss_pred HHHHHHHHHHHc
Confidence 999999988754
No 76
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.49 E-value=0.00056 Score=53.26 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=57.6
Q ss_pred cccEEEEeChh--hHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---
Q 033044 17 LLAVDCFTFSS--SIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA--- 87 (128)
Q Consensus 17 ~~~~~v~~f~~--~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~--- 87 (128)
..++.+.+|++ ++..+++.||+++..+ -..++.|++++|+|+|.-+.. + ..+.+.+.+.+++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~----~~e~i~~~~~g~~~~~~ 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVG----G----PRDIVVDGVTGLLVDPR 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCC----C----HHHHccCCCCeEEeCCC
Confidence 35789999975 5889999999999542 236899999999999887653 2 33445555566554
Q ss_pred ChHHHHHHHHhcch
Q 033044 88 HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ~~~~l~~~i~~l~~ 101 (128)
+++++.+.|.++..
T Consensus 354 ~~~~l~~~i~~l~~ 367 (398)
T cd03800 354 DPEALAAALRRLLT 367 (398)
T ss_pred CHHHHHHHHHHHHh
Confidence 68899999988864
No 77
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.49 E-value=0.0005 Score=56.14 Aligned_cols=76 Identities=7% Similarity=0.089 Sum_probs=55.7
Q ss_pred ccEEEEeCh--hhHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh---CCCEEEe-
Q 033044 18 LAVDCFTFS--SSIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD---RKHLYCA- 87 (128)
Q Consensus 18 ~~~~v~~f~--~~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~---~g~~~~~- 87 (128)
.++++.+|+ +++.++|+.||++|.-+. ..++.|++++|+|+|...... ..+.+.+ .+.+++.
T Consensus 312 ~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg--------~~eiv~~~~~~~~G~lv~ 383 (465)
T PLN02871 312 TPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVVAARAGG--------IPDIIPPDQEGKTGFLYT 383 (465)
T ss_pred CCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEEEcCCCC--------cHhhhhcCCCCCceEEeC
Confidence 478899998 579999999999996653 357899999999999876531 1223333 3445443
Q ss_pred --ChHHHHHHHHhcch
Q 033044 88 --HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 --~~~~l~~~i~~l~~ 101 (128)
+++++.++|.++++
T Consensus 384 ~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 384 PGDVDDCVEKLETLLA 399 (465)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 78889998888753
No 78
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.47 E-value=0.00056 Score=54.51 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=55.9
Q ss_pred CcccEEEEeChh--hHHHHHhhccEEEecCc-----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE-E-
Q 033044 16 GLLAVDCFTFSS--SIADHLSSASLVISHAG-----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLY-C- 86 (128)
Q Consensus 16 ~~~~~~v~~f~~--~~~~~~~~adlvIthaG-----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~-~- 86 (128)
++.++.+.+|.+ ++.++|+.||++|.-+. ..++.|++++|+|+|.-.... +.+.+.+...|+ +
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg--------~~Eiv~~~~~G~~l~ 326 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG--------ITEFVLEGITGYHLA 326 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC--------cHhhcccCCceEEEe
Confidence 345788888874 69999999999986432 368899999999999976541 223333333343 2
Q ss_pred --eChHHHHHHHHhcch
Q 033044 87 --AHPQSLHQVIVGMDL 101 (128)
Q Consensus 87 --~~~~~l~~~i~~l~~ 101 (128)
.+++.+.++|.++++
T Consensus 327 ~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 327 EPMTSDSIISDINRTLA 343 (380)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 278999999988764
No 79
>PLN02275 transferase, transferring glycosyl groups
Probab=97.47 E-value=0.00092 Score=53.05 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=52.2
Q ss_pred cEEEEe-Ch--hhHHHHHhhccEEEe----cCc---hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-
Q 033044 19 AVDCFT-FS--SSIADHLSSASLVIS----HAG---SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA- 87 (128)
Q Consensus 19 ~~~v~~-f~--~~~~~~~~~adlvIt----haG---~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~- 87 (128)
++.+++ |. +++..+|+.||++|. ..| .+++.|++++|+|+|..... + +.+.+.+.+.|++.
T Consensus 287 ~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g----~~eiv~~g~~G~lv~ 358 (371)
T PLN02275 287 HVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----C----IGELVKDGKNGLLFS 358 (371)
T ss_pred ceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCC----C----hHHHccCCCCeEEEC
Confidence 466666 43 679999999999984 212 35899999999999997543 2 34455554455443
Q ss_pred ChHHHHHHHHhcc
Q 033044 88 HPQSLHQVIVGMD 100 (128)
Q Consensus 88 ~~~~l~~~i~~l~ 100 (128)
+++.|.++|.+++
T Consensus 359 ~~~~la~~i~~l~ 371 (371)
T PLN02275 359 SSSELADQLLELL 371 (371)
T ss_pred CHHHHHHHHHHhC
Confidence 7788888887763
No 80
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.32 E-value=0.00066 Score=53.01 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=56.6
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---Ch
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---HP 89 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~~ 89 (128)
..++++.+|.+++.++|+.||++|.-+ ...++.||+++|+|+|...... + ..+.+.....|+++ ++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g----~~~~v~~~~~G~lv~~~d~ 332 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---G----PSEIIEDGENGYLVPKGDI 332 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---C----cHHHcccCCCceEeCCCcH
Confidence 346888889999999999999988643 3468999999999999975431 1 12233333344332 78
Q ss_pred HHHHHHHHhcch
Q 033044 90 QSLHQVIVGMDL 101 (128)
Q Consensus 90 ~~l~~~i~~l~~ 101 (128)
++|.++|.+++.
T Consensus 333 ~~la~~i~~ll~ 344 (372)
T cd04949 333 EALAEAIIELLN 344 (372)
T ss_pred HHHHHHHHHHHc
Confidence 899999988864
No 81
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.29 E-value=0.00087 Score=52.00 Aligned_cols=78 Identities=17% Similarity=0.092 Sum_probs=57.0
Q ss_pred CcccEEEEeChhh--HHHHHhhccEEEec----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--
Q 033044 16 GLLAVDCFTFSSS--IADHLSSASLVISH----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-- 87 (128)
Q Consensus 16 ~~~~~~v~~f~~~--~~~~~~~adlvIth----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-- 87 (128)
...++++.+|+++ +.++|+.||++|.- .| .++.|++++|+|+|....... .+.+.+...+++.
T Consensus 240 ~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~~g-~~~~Eama~G~Pvi~~~~~~~--------~e~i~~~~~G~~~~~ 310 (351)
T cd03804 240 AGPNVTFLGRVSDEELRDLYARARAFLFPAEEDFG-IVPVEAMASGTPVIAYGKGGA--------LETVIDGVTGILFEE 310 (351)
T ss_pred cCCCEEEecCCCHHHHHHHHHhCCEEEECCcCCCC-chHHHHHHcCCCEEEeCCCCC--------cceeeCCCCEEEeCC
Confidence 3468999999876 89999999998853 24 478999999999999865421 1223333455443
Q ss_pred -ChHHHHHHHHhcchh
Q 033044 88 -HPQSLHQVIVGMDLK 102 (128)
Q Consensus 88 -~~~~l~~~i~~l~~~ 102 (128)
+++.+.++|.++.+.
T Consensus 311 ~~~~~la~~i~~l~~~ 326 (351)
T cd03804 311 QTVESLAAAVERFEKN 326 (351)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 678899999888653
No 82
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.23 E-value=0.0022 Score=51.78 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=54.2
Q ss_pred cEEEE-eCh--hhHHHHHhhccEEEe----cCc---hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-e
Q 033044 19 AVDCF-TFS--SSIADHLSSASLVIS----HAG---SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-A 87 (128)
Q Consensus 19 ~~~v~-~f~--~~~~~~~~~adlvIt----haG---~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~ 87 (128)
++.++ +|+ +++.++|+.||++|+ ..| ..++.|++++|+|+|....+ ...+.+.+.+.|++ -
T Consensus 295 ~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~--------~~~eiv~~~~~G~lv~ 366 (415)
T cd03816 295 KVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK--------CIDELVKHGENGLVFG 366 (415)
T ss_pred cEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC--------CHHHHhcCCCCEEEEC
Confidence 45555 465 579999999999984 222 45899999999999997543 23344555445544 4
Q ss_pred ChHHHHHHHHhcchh
Q 033044 88 HPQSLHQVIVGMDLK 102 (128)
Q Consensus 88 ~~~~l~~~i~~l~~~ 102 (128)
++++|.++|.+++++
T Consensus 367 d~~~la~~i~~ll~~ 381 (415)
T cd03816 367 DSEELAEQLIDLLSN 381 (415)
T ss_pred CHHHHHHHHHHHHhc
Confidence 889999999888654
No 83
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.16 E-value=0.0024 Score=50.18 Aligned_cols=78 Identities=8% Similarity=0.036 Sum_probs=54.5
Q ss_pred cccEEEEeChhh----HHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEe-CCCCCCchHHHHHHHHHhCCCEEE-
Q 033044 17 LLAVDCFTFSSS----IADHLSSASLVISHAG----SGSIFETLRLGKPLIVVV-NEDLMDNHQSELAEELADRKHLYC- 86 (128)
Q Consensus 17 ~~~~~v~~f~~~----~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP-~~~~~~~~Q~~nA~~l~~~g~~~~- 86 (128)
..++++.+|.++ +.++++.||++|.-+- ..++.||+++|+|+|..- .. + ..+.+.+...|+.
T Consensus 235 ~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~----g----~~eiv~~~~~G~lv 306 (359)
T PRK09922 235 EQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMS----G----PRDIIKPGLNGELY 306 (359)
T ss_pred CCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCC----C----hHHHccCCCceEEE
Confidence 457999999754 6667778999996432 579999999999999874 32 1 1123333333433
Q ss_pred --eChHHHHHHHHhcchh
Q 033044 87 --AHPQSLHQVIVGMDLK 102 (128)
Q Consensus 87 --~~~~~l~~~i~~l~~~ 102 (128)
.+++++.++|.+++.+
T Consensus 307 ~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 307 TPGNIDEFVGKLNKVISG 324 (359)
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 3789999999998654
No 84
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.13 E-value=0.0031 Score=50.86 Aligned_cols=76 Identities=17% Similarity=0.313 Sum_probs=55.2
Q ss_pred ccEEEEeChh--hHHHHHhhccEEEecC---------c-hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 033044 18 LAVDCFTFSS--SIADHLSSASLVISHA---------G-SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLY 85 (128)
Q Consensus 18 ~~~~v~~f~~--~~~~~~~~adlvItha---------G-~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~ 85 (128)
.++++.+|.+ ++.++|+.||++|.-+ | ..+++|++++|+|+|.-.... ..+.+.+...++
T Consensus 279 ~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g--------~~E~v~~~~~G~ 350 (406)
T PRK15427 279 DVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG--------IPELVEADKSGW 350 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC--------chhhhcCCCceE
Confidence 4688999984 6899999999988532 2 367999999999999876541 223333333454
Q ss_pred Ee---ChHHHHHHHHhcch
Q 033044 86 CA---HPQSLHQVIVGMDL 101 (128)
Q Consensus 86 ~~---~~~~l~~~i~~l~~ 101 (128)
+. +++.|.++|.++.+
T Consensus 351 lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 351 LVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 43 78899999988864
No 85
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.13 E-value=0.0023 Score=50.65 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=54.6
Q ss_pred ccEEEEeCh--hhHHHHHhhccEEEec----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---C
Q 033044 18 LAVDCFTFS--SSIADHLSSASLVISH----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---H 88 (128)
Q Consensus 18 ~~~~v~~f~--~~~~~~~~~adlvIth----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~ 88 (128)
.++++.+++ +++.++|+.||++|.- +...++.|++++|+|+|....+. ..+.+.+...++.. +
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~--------~~e~i~~~~~g~~~~~~d 354 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG--------LPVAVADGETGLLVDGHD 354 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC--------cHhhhccCCceEECCCCC
Confidence 468888887 4689999999998842 22358999999999999986542 12233343445443 7
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
++++.++|.++++
T Consensus 355 ~~~la~~i~~~l~ 367 (405)
T TIGR03449 355 PADWADALARLLD 367 (405)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888754
No 86
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.12 E-value=0.0019 Score=51.31 Aligned_cols=76 Identities=13% Similarity=0.098 Sum_probs=54.4
Q ss_pred ccEEEEeChh--hHHHHHhhccEEEecC--c--hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---C
Q 033044 18 LAVDCFTFSS--SIADHLSSASLVISHA--G--SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---H 88 (128)
Q Consensus 18 ~~~~v~~f~~--~~~~~~~~adlvItha--G--~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~ 88 (128)
.++++.++++ ++.++|+.||++|.-+ . ..++.|++++|+|+|.-..+. ..+.+.....++.. +
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~g--------~~e~i~~~~~G~lv~~~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTAP--------VREVITDGENGLLVDFFD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCCC--------chhhcccCCceEEcCCCC
Confidence 4788999984 6889999999988422 1 248999999999999875531 23333333344443 7
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
++.|.++|.++++
T Consensus 353 ~~~la~~i~~ll~ 365 (396)
T cd03818 353 PDALAAAVIELLD 365 (396)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999988864
No 87
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=96.94 E-value=0.0032 Score=50.16 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=53.3
Q ss_pred ccEEEEeCh--hhHHHHHhhccEEEecC---c-hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChH
Q 033044 18 LAVDCFTFS--SSIADHLSSASLVISHA---G-SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-AHPQ 90 (128)
Q Consensus 18 ~~~~v~~f~--~~~~~~~~~adlvItha---G-~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~~~~ 90 (128)
.++++.+++ +++..+++.||++|.-+ | ..++.||+++|+|+|+-+.... .+.+.+.+..+. .+.+
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~--------~e~i~~~~~~~~~~~~~ 321 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI--------PEVLPPDMILLAEPDVE 321 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc--------hhheeCCceeecCCCHH
Confidence 468888986 46999999999998643 1 2499999999999998776521 122222222222 2778
Q ss_pred HHHHHHHhcch
Q 033044 91 SLHQVIVGMDL 101 (128)
Q Consensus 91 ~l~~~i~~l~~ 101 (128)
++.+++.+++.
T Consensus 322 ~l~~~l~~~l~ 332 (398)
T cd03796 322 SIVRKLEEAIS 332 (398)
T ss_pred HHHHHHHHHHh
Confidence 88888887764
No 88
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.91 E-value=0.003 Score=44.74 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=40.5
Q ss_pred cccEEEEeCh---hhHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCC
Q 033044 17 LLAVDCFTFS---SSIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNED 65 (128)
Q Consensus 17 ~~~~~v~~f~---~~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~ 65 (128)
..++++.++. +++..+++.||++|+-.. .+++.|++++|+|+|.-+.+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4578888884 556677777999999885 689999999999999988763
No 89
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.90 E-value=0.0047 Score=49.18 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=57.0
Q ss_pred cEEEEeCh--hhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChHHHHH
Q 033044 19 AVDCFTFS--SSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC--AHPQSLHQ 94 (128)
Q Consensus 19 ~~~v~~f~--~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~~~l~~ 94 (128)
++++++-. .++-.+|+.|++|||-+| |-..|+.++|+|+|.+-.. ..-|. ....|..+. .+++++.+
T Consensus 240 ~v~~~~~l~~~~~l~ll~~a~~vvgdSs-GI~eEa~~lg~P~v~iR~~---geRqe-----~r~~~~nvlv~~~~~~I~~ 310 (346)
T PF02350_consen 240 NVRLIEPLGYEEYLSLLKNADLVVGDSS-GIQEEAPSLGKPVVNIRDS---GERQE-----GRERGSNVLVGTDPEAIIQ 310 (346)
T ss_dssp TEEEE----HHHHHHHHHHESEEEESSH-HHHHHGGGGT--EEECSSS----S-HH-----HHHTTSEEEETSSHHHHHH
T ss_pred CEEEECCCCHHHHHHHHhcceEEEEcCc-cHHHHHHHhCCeEEEecCC---CCCHH-----HHhhcceEEeCCCHHHHHH
Confidence 66666554 357899999999999999 5444999999999999221 11222 123444433 38899999
Q ss_pred HHHhcchh---------cCCCCC-CCChHHHHHHHH
Q 033044 95 VIVGMDLK---------SLLPYQ-PGDATPVAKLIN 120 (128)
Q Consensus 95 ~i~~l~~~---------~~~~~~-~~~~~~i~~~i~ 120 (128)
++.+++.. ...+|- .+++++|+++|+
T Consensus 311 ai~~~l~~~~~~~~~~~~~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 311 AIEKALSDKDFYRKLKNRPNPYGDGNASERIVEILK 346 (346)
T ss_dssp HHHHHHH-HHHHHHHHCS--TT-SS-HHHHHHHHHH
T ss_pred HHHHHHhChHHHHhhccCCCCCCCCcHHHHHHHhhC
Confidence 99888742 133554 346778887764
No 90
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=96.79 E-value=0.008 Score=47.07 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=54.1
Q ss_pred cccEEEEeChhh--HHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eC
Q 033044 17 LLAVDCFTFSSS--IADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC--AH 88 (128)
Q Consensus 17 ~~~~~v~~f~~~--~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~ 88 (128)
..++++.+++++ +..+|..||+++..+ -..++.|++++|+|+|..-.+ +.. +.+.+.+.+++ .+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~----e~i~~~~~g~~~~~~ 350 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPL----ETVVDGETGFLCEPT 350 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCC----CcH----HHhccCCceEEeCCC
Confidence 347899999864 678999999998532 135889999999999998543 211 22333334443 37
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
++++.+.|.++.+
T Consensus 351 ~~~~a~~i~~l~~ 363 (392)
T cd03805 351 PEEFAEAMLKLAN 363 (392)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888764
No 91
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=96.77 E-value=0.0096 Score=46.54 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=47.4
Q ss_pred hhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---Ch------HHHH
Q 033044 27 SSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---HP------QSLH 93 (128)
Q Consensus 27 ~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~~------~~l~ 93 (128)
+++.++|+.||++|.-+ ...++.|++++|+|+|.-..+ + ..+.+.....++.. ++ +.+.
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~----~~e~i~~~~~G~~~~~~~~~~~~~~~~l~ 343 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG----G----IPEVVVDGETGFLVPPDNSDADGFQAELA 343 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC----C----HHHHhhCCCceEEcCCCCCcccchHHHHH
Confidence 46999999999998643 235789999999999987654 1 23344444445543 44 7888
Q ss_pred HHHHhcch
Q 033044 94 QVIVGMDL 101 (128)
Q Consensus 94 ~~i~~l~~ 101 (128)
++|.+++.
T Consensus 344 ~~i~~l~~ 351 (388)
T TIGR02149 344 KAINILLA 351 (388)
T ss_pred HHHHHHHh
Confidence 88887753
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.76 E-value=0.0012 Score=50.33 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=52.9
Q ss_pred cccEEEEeCh--hhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eCh
Q 033044 17 LLAVDCFTFS--SSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-AHP 89 (128)
Q Consensus 17 ~~~~~v~~f~--~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~~~ 89 (128)
..++++.+++ +++.++++.||++|.-+ ...++.|++++|+|+|.-..+.. .+ .+.+.|..+. .+.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~--~e------~~~~~~~~~~~~~~ 323 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSL--PE------VAGDAALYFDPLDP 323 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCc--cc------eecCceeeeCCCCH
Confidence 4578899998 56889999999887542 24579999999999998655421 11 1222333222 268
Q ss_pred HHHHHHHHhcc
Q 033044 90 QSLHQVIVGMD 100 (128)
Q Consensus 90 ~~l~~~i~~l~ 100 (128)
+++.++|.++.
T Consensus 324 ~~~~~~i~~l~ 334 (365)
T cd03809 324 EALAAAIERLL 334 (365)
T ss_pred HHHHHHHHHHh
Confidence 88999988864
No 93
>PHA01633 putative glycosyl transferase group 1
Probab=96.75 E-value=0.0066 Score=48.36 Aligned_cols=84 Identities=13% Similarity=0.155 Sum_probs=55.0
Q ss_pred ccEEEEe---C--hhhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCC---CCCCch-----HHHHHHHHH-
Q 033044 18 LAVDCFT---F--SSSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNE---DLMDNH-----QSELAEELA- 79 (128)
Q Consensus 18 ~~~~v~~---f--~~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~---~~~~~~-----Q~~nA~~l~- 79 (128)
.++++.+ + .+++.++++.||++|.-+ =..++.||+++|+|+|.--.+ +..++. +..++..+.
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~ 280 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYD 280 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcC
Confidence 4677764 3 256999999999999632 236899999999998886332 211110 122333333
Q ss_pred -hCCCEEE---eChHHHHHHHHhcch
Q 033044 80 -DRKHLYC---AHPQSLHQVIVGMDL 101 (128)
Q Consensus 80 -~~g~~~~---~~~~~l~~~i~~l~~ 101 (128)
..|.++. .+++++.++|.++..
T Consensus 281 ~~~g~g~~~~~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 281 KEHGQKWKIHKFQIEDMANAIILAFE 306 (335)
T ss_pred cccCceeeecCCCHHHHHHHHHHHHh
Confidence 2456554 389999999988754
No 94
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.75 E-value=0.0081 Score=47.20 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=53.0
Q ss_pred ccEEEEeCh----hhHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eC
Q 033044 18 LAVDCFTFS----SSIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-AH 88 (128)
Q Consensus 18 ~~~~v~~f~----~~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~~ 88 (128)
.++.++++. .++..+++.||+++.-+- ..++.|++++|+|+|.-.... ..+.+.+...++. -+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~--------~~~~i~~~~~g~~~~~ 323 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG--------IPLQIEDGETGFLVDT 323 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC--------chhhcccCCceEEeCC
Confidence 467787776 468899999999997552 359999999999999876542 1223333344444 36
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
++.+..+|.+++.
T Consensus 324 ~~~~a~~i~~ll~ 336 (372)
T cd03792 324 VEEAAVRILYLLR 336 (372)
T ss_pred cHHHHHHHHHHHc
Confidence 7777777777653
No 95
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=96.74 E-value=0.0083 Score=45.57 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=53.6
Q ss_pred cccEEEEeChhh--HHHHHhhccEEEecC----c-hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-C
Q 033044 17 LLAVDCFTFSSS--IADHLSSASLVISHA----G-SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-H 88 (128)
Q Consensus 17 ~~~~~v~~f~~~--~~~~~~~adlvItha----G-~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-~ 88 (128)
..++++.+|+++ +.++|+.||+++.-+ | ..++.|++++|+|+|.-..+.. .+.+.+...++.. .
T Consensus 223 ~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~~--------~e~i~~~~~g~l~~~ 294 (335)
T cd03802 223 GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGAV--------PEVVEDGVTGFLVDS 294 (335)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCCc--------hhheeCCCcEEEeCC
Confidence 468999999864 678999999988422 2 3589999999999998876521 1222232244443 5
Q ss_pred hHHHHHHHHhcc
Q 033044 89 PQSLHQVIVGMD 100 (128)
Q Consensus 89 ~~~l~~~i~~l~ 100 (128)
++++.++|.++.
T Consensus 295 ~~~l~~~l~~l~ 306 (335)
T cd03802 295 VEELAAAVARAD 306 (335)
T ss_pred HHHHHHHHHHHh
Confidence 888888888774
No 96
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=96.61 E-value=0.012 Score=47.36 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=53.4
Q ss_pred ccEEEEeChh--hHHHHHhh--ccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--
Q 033044 18 LAVDCFTFSS--SIADHLSS--ASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-- 87 (128)
Q Consensus 18 ~~~~v~~f~~--~~~~~~~~--adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-- 87 (128)
.++++.+|++ ++.++++. ||++|..+- ..+++||+++|+|+|.-... + ..+.+.+..-|+..
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g----~~e~i~~~~~G~l~~~ 360 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----G----TPEIVDNGGNGLLLSK 360 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----C----cHHHhcCCCcEEEeCC
Confidence 4688999986 47788876 677765442 46899999999999986543 2 23444444345432
Q ss_pred --ChHHHHHHHHhcch
Q 033044 88 --HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 --~~~~l~~~i~~l~~ 101 (128)
+++++.++|.++.+
T Consensus 361 ~~~~~~la~~I~~ll~ 376 (407)
T cd04946 361 DPTPNELVSSLSKFID 376 (407)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 57889999998864
No 97
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.58 E-value=0.0065 Score=48.19 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=52.5
Q ss_pred cccEEEEeCh--hhHHHHHhhccEEEec--------Cc-hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC-CCE
Q 033044 17 LLAVDCFTFS--SSIADHLSSASLVISH--------AG-SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR-KHL 84 (128)
Q Consensus 17 ~~~~~v~~f~--~~~~~~~~~adlvIth--------aG-~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~-g~~ 84 (128)
..|+++.++. +++..+++.||+.|.- ++ ...+.|++++|+|+|..+.++. .... +..
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~-----------~~~~~~~~ 321 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEV-----------RRYEDEVV 321 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHH-----------HhhcCcEE
Confidence 3689999998 5799999999998742 22 2469999999999998765311 1111 233
Q ss_pred EEe-ChHHHHHHHHhcc
Q 033044 85 YCA-HPQSLHQVIVGMD 100 (128)
Q Consensus 85 ~~~-~~~~l~~~i~~l~ 100 (128)
+.. +++++.++|.+++
T Consensus 322 ~~~~d~~~~~~ai~~~l 338 (373)
T cd04950 322 LIADDPEEFVAAIEKAL 338 (373)
T ss_pred EeCCCHHHHHHHHHHHH
Confidence 332 7999999999864
No 98
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.55 E-value=0.012 Score=47.54 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=58.5
Q ss_pred EEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCE-EE------------
Q 033044 20 VDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHL-YC------------ 86 (128)
Q Consensus 20 ~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~-~~------------ 86 (128)
+.+.-...+-.++|+.||++++.+|. .+.|++.+|+|+|++=.. +.=....|+++.+..+. +.
T Consensus 245 ~~~~~~~~~~~~~m~~ad~al~~SGT-aTLE~Al~g~P~Vv~Yk~---~~lt~~iak~lvk~~~isL~Niia~~~v~PEl 320 (373)
T PF02684_consen 245 VSIVIIEGESYDAMAAADAALAASGT-ATLEAALLGVPMVVAYKV---SPLTYFIAKRLVKVKYISLPNIIAGREVVPEL 320 (373)
T ss_pred CeEEEcCCchHHHHHhCcchhhcCCH-HHHHHHHhCCCEEEEEcC---cHHHHHHHHHhhcCCEeechhhhcCCCcchhh
Confidence 34444444567899999999999995 788999999999999654 34567899999887653 21
Q ss_pred ----eChHHHHHHHHhcch
Q 033044 87 ----AHPQSLHQVIVGMDL 101 (128)
Q Consensus 87 ----~~~~~l~~~i~~l~~ 101 (128)
.+++.+.+.+.+++.
T Consensus 321 iQ~~~~~~~i~~~~~~ll~ 339 (373)
T PF02684_consen 321 IQEDATPENIAAELLELLE 339 (373)
T ss_pred hcccCCHHHHHHHHHHHhc
Confidence 167777777777654
No 99
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=96.44 E-value=0.015 Score=47.28 Aligned_cols=76 Identities=9% Similarity=0.108 Sum_probs=52.8
Q ss_pred ccEEEEeCh--hhHHHHHhhc----cEEEecC---c-hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe
Q 033044 18 LAVDCFTFS--SSIADHLSSA----SLVISHA---G-SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA 87 (128)
Q Consensus 18 ~~~~v~~f~--~~~~~~~~~a----dlvItha---G-~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~ 87 (128)
.++++.++. +++.++|+.| |++|.-+ | ..++.||+++|+|+|.-... + ..+.+.+...+++.
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g----~~eiv~~~~~G~lv 388 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----G----PRDIIANCRNGLLV 388 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----C----cHHHhcCCCcEEEe
Confidence 356666653 5688999987 8988643 2 35999999999999988664 1 22333333344443
Q ss_pred ---ChHHHHHHHHhcch
Q 033044 88 ---HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ---~~~~l~~~i~~l~~ 101 (128)
+++.|.++|.++++
T Consensus 389 ~~~d~~~la~~i~~ll~ 405 (439)
T TIGR02472 389 DVLDLEAIASALEDALS 405 (439)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 78999999988754
No 100
>PRK10307 putative glycosyl transferase; Provisional
Probab=96.39 E-value=0.017 Score=46.06 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=52.1
Q ss_pred cEEEEeChh--hHHHHHhhccEEEe--cCc------hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-e
Q 033044 19 AVDCFTFSS--SIADHLSSASLVIS--HAG------SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-A 87 (128)
Q Consensus 19 ~~~v~~f~~--~~~~~~~~adlvIt--haG------~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~ 87 (128)
++++.+|.+ ++.++++.||+.|. +.+ .+.+.|++++|+|+|....+. . ...+.+...|..+- -
T Consensus 285 ~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g---~---~~~~~i~~~G~~~~~~ 358 (412)
T PRK10307 285 NVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPG---T---ELGQLVEGIGVCVEPE 358 (412)
T ss_pred ceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCC---c---hHHHHHhCCcEEeCCC
Confidence 688899874 68999999997553 332 235789999999999987641 1 11222223333322 2
Q ss_pred ChHHHHHHHHhcch
Q 033044 88 HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ~~~~l~~~i~~l~~ 101 (128)
++++|.++|.++.+
T Consensus 359 d~~~la~~i~~l~~ 372 (412)
T PRK10307 359 SVEALVAAIAALAR 372 (412)
T ss_pred CHHHHHHHHHHHHh
Confidence 78899999988753
No 101
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.36 E-value=0.013 Score=48.06 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=53.1
Q ss_pred ccEEEEeChhhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC-----C-CEEE-
Q 033044 18 LAVDCFTFSSSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR-----K-HLYC- 86 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~-----g-~~~~- 86 (128)
.++++.+ ..++.++|+.||++|.-+ -..++.|++++|+|+|.-... + ..+.+.+. | .+++
T Consensus 354 ~~V~f~G-~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g----~----~~elv~~~~~~~~g~~G~lv 424 (475)
T cd03813 354 DNVKFTG-FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVG----S----CRELIEGADDEALGPAGEVV 424 (475)
T ss_pred CeEEEcC-CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCC----C----hHHHhcCCcccccCCceEEE
Confidence 4788888 567999999999998553 346899999999999985432 1 22333331 1 3433
Q ss_pred --eChHHHHHHHHhcch
Q 033044 87 --AHPQSLHQVIVGMDL 101 (128)
Q Consensus 87 --~~~~~l~~~i~~l~~ 101 (128)
.+++++.++|.++++
T Consensus 425 ~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 425 PPADPEALARAILRLLK 441 (475)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 278999999988864
No 102
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.26 E-value=0.011 Score=45.29 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=50.7
Q ss_pred cccEEEEeChh--hHHHHHhhccEEEecCch-----HHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeCh
Q 033044 17 LLAVDCFTFSS--SIADHLSSASLVISHAGS-----GSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHP 89 (128)
Q Consensus 17 ~~~~~v~~f~~--~~~~~~~~adlvIthaG~-----~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~ 89 (128)
..++++.++++ ++.+++.+||+++.++-. .++.|++++|+|+|....+.. . +.+...|.. +...
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~--~------e~~~~~g~~-~~~~ 317 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN--R------EVLGDKAIY-FKVG 317 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcc--c------eeecCCeeE-ecCc
Confidence 35789999985 477899999999876543 579999999999998865421 1 112222222 2222
Q ss_pred HHHHHHHHhcch
Q 033044 90 QSLHQVIVGMDL 101 (128)
Q Consensus 90 ~~l~~~i~~l~~ 101 (128)
+.+.+++.++.+
T Consensus 318 ~~l~~~i~~l~~ 329 (363)
T cd04955 318 DDLASLLEELEA 329 (363)
T ss_pred hHHHHHHHHHHh
Confidence 338888877754
No 103
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.25 E-value=0.026 Score=45.73 Aligned_cols=89 Identities=15% Similarity=0.282 Sum_probs=65.1
Q ss_pred hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--ChHHHHHHHHhcch----
Q 033044 28 SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA--HPQSLHQVIVGMDL---- 101 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~--~~~~l~~~i~~l~~---- 101 (128)
++..+|..|-+++|-+| |-.-||..+|+|++++-.. .++.+ -.+.|..+.. +.+.+.+.+.++++
T Consensus 274 ~f~~L~~~a~~iltDSG-giqEEAp~lg~Pvl~lR~~----TERPE----~v~agt~~lvg~~~~~i~~~~~~ll~~~~~ 344 (383)
T COG0381 274 DFHNLMKNAFLILTDSG-GIQEEAPSLGKPVLVLRDT----TERPE----GVEAGTNILVGTDEENILDAATELLEDEEF 344 (383)
T ss_pred HHHHHHHhceEEEecCC-chhhhHHhcCCcEEeeccC----CCCcc----ceecCceEEeCccHHHHHHHHHHHhhChHH
Confidence 47899999999999999 5789999999999999543 12222 2334555443 67888888888764
Q ss_pred -----hcCCCCCC-CChHHHHHHHHHhcCC
Q 033044 102 -----KSLLPYQP-GDATPVAKLINRFLGF 125 (128)
Q Consensus 102 -----~~~~~~~~-~~~~~i~~~i~~~~g~ 125 (128)
+..++|-. .++++|+++|.+..++
T Consensus 345 ~~~m~~~~npYgdg~as~rIv~~l~~~~~~ 374 (383)
T COG0381 345 YERMSNAKNPYGDGNASERIVEILLNYFDS 374 (383)
T ss_pred HHHHhcccCCCcCcchHHHHHHHHHHHhhh
Confidence 23345543 3788999999988764
No 104
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.16 E-value=0.063 Score=42.35 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=56.3
Q ss_pred HHHHHhhccEEEe-cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChH-HHHHHHHhcchhcCCC
Q 033044 29 IADHLSSASLVIS-HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQ-SLHQVIVGMDLKSLLP 106 (128)
Q Consensus 29 ~~~~~~~adlvIt-haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~-~l~~~i~~l~~~~~~~ 106 (128)
+..+|+.||.||. -=-.+.++||++.|+|+.++|.+. ..+-=....+.|.+.|+....+.. .+. ...+
T Consensus 222 y~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~g~~r~~~~~~~~~---------~~~~ 291 (311)
T PF06258_consen 222 YLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEERGAVRPFTGWRDLE---------QWTP 291 (311)
T ss_pred HHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHCCCEEECCCccccc---------cccc
Confidence 6789999995555 445667899999999999999875 222223467777888887654321 111 1222
Q ss_pred CCC-CChHHHHHHHHHhc
Q 033044 107 YQP-GDATPVAKLINRFL 123 (128)
Q Consensus 107 ~~~-~~~~~i~~~i~~~~ 123 (128)
+.+ +.++.+++.|.+.+
T Consensus 292 ~~pl~et~r~A~~i~~r~ 309 (311)
T PF06258_consen 292 YEPLDETDRVAAEIRERL 309 (311)
T ss_pred CCCccHHHHHHHHHHHHh
Confidence 333 56788888887754
No 105
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.15 E-value=0.026 Score=44.21 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=53.6
Q ss_pred cccEEEEeChh--hHHHHHhhccEEEec-C-------------chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh
Q 033044 17 LLAVDCFTFSS--SIADHLSSASLVISH-A-------------GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD 80 (128)
Q Consensus 17 ~~~~~v~~f~~--~~~~~~~~adlvIth-a-------------G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~ 80 (128)
..++++.+|++ ++..+|+..-.+|.- . =.+-+.+.+++|+|+|+-+. ...++.+++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~--------~~~~~~V~~ 277 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSK--------AAIADFIVE 277 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCC--------ccHHHHHHh
Confidence 35789998985 477777773223322 1 12347889999999998543 357788888
Q ss_pred CCCEEEe-ChHHHHHHHHhcch
Q 033044 81 RKHLYCA-HPQSLHQVIVGMDL 101 (128)
Q Consensus 81 ~g~~~~~-~~~~l~~~i~~l~~ 101 (128)
.+.|+++ +.+++.+.+.++.+
T Consensus 278 ~~~G~~v~~~~el~~~l~~~~~ 299 (333)
T PRK09814 278 NGLGFVVDSLEELPEIIDNITE 299 (333)
T ss_pred CCceEEeCCHHHHHHHHHhcCH
Confidence 9999876 56788888887653
No 106
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.15 E-value=0.033 Score=47.36 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=40.6
Q ss_pred cccEEEEeChhhHHHHHhhccEEEec----CchHHHHHHHHhCCCEEEEeCC
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISH----AGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIth----aG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
..++++.+|.+++..+|+.||++|.- +-..++.|++++|+|+|.-...
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvG 505 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAG 505 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCC
Confidence 35799999999999999999999863 2246999999999999987653
No 107
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.09 E-value=0.023 Score=47.40 Aligned_cols=75 Identities=15% Similarity=0.034 Sum_probs=51.4
Q ss_pred ccEEEEeChhhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeC-----
Q 033044 18 LAVDCFTFSSSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAH----- 88 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~----- 88 (128)
.++++.++. ++.++++.||++|.-+ -..++.||+++|+|+|....... ..+.+..-.-|+.+.
T Consensus 376 ~~V~f~G~~-~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G-------~~eiI~~g~nG~lv~~~~~~ 447 (500)
T TIGR02918 376 DYIHLKGHR-NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG-------NPTFIEDNKNGYLIPIDEEE 447 (500)
T ss_pred CeEEEcCCC-CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCC-------CHHHccCCCCEEEEeCCccc
Confidence 467888886 5899999999999644 34699999999999999765311 122222222333322
Q ss_pred ------hHHHHHHHHhcc
Q 033044 89 ------PQSLHQVIVGMD 100 (128)
Q Consensus 89 ------~~~l~~~i~~l~ 100 (128)
++.|+++|.+++
T Consensus 448 ~d~~~~~~~la~~I~~ll 465 (500)
T TIGR02918 448 DDEDQIITALAEKIVEYF 465 (500)
T ss_pred cchhHHHHHHHHHHHHHh
Confidence 677888887775
No 108
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=96.07 E-value=0.049 Score=44.61 Aligned_cols=79 Identities=15% Similarity=0.070 Sum_probs=63.5
Q ss_pred ccEEEEeChhhHHHHHhhccEEE------ecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-ChH
Q 033044 18 LAVDCFTFSSSIADHLSSASLVI------SHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-HPQ 90 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvI------thaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-~~~ 90 (128)
-++-+.+-.-+|..+++-||+.+ -+||.| ..|.+++|+|+|+=|+. ..|.+.++.+.+.|+++.+ +.+
T Consensus 300 tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~----~Nf~ei~~~l~~~ga~~~v~~~~ 374 (419)
T COG1519 300 TDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYT----FNFSDIAERLLQAGAGLQVEDAD 374 (419)
T ss_pred CcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCcc----ccHHHHHHHHHhcCCeEEECCHH
Confidence 36677777778999999999764 377875 89999999999999987 4599999999999999876 555
Q ss_pred HHHHHHHhcch
Q 033044 91 SLHQVIVGMDL 101 (128)
Q Consensus 91 ~l~~~i~~l~~ 101 (128)
.|...+..++.
T Consensus 375 ~l~~~v~~l~~ 385 (419)
T COG1519 375 LLAKAVELLLA 385 (419)
T ss_pred HHHHHHHHhcC
Confidence 66666665543
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.97 E-value=0.041 Score=47.83 Aligned_cols=76 Identities=9% Similarity=0.112 Sum_probs=53.3
Q ss_pred cccEEEEeChhhHHHHHhhccEEEec---Cc-hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---C-
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISH---AG-SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---H- 88 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIth---aG-~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~- 88 (128)
..++++.+|.+++..+|+.||++|.- -| .+++.|++++|+|+|.-... + ..+.+.+...++.+ +
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G----~~EiV~dg~~GlLv~~~d~ 644 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----G----AGEAVQEGVTGLTLPADTV 644 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEEEECCC----C----hHHHccCCCCEEEeCCCCC
Confidence 35789999999999999999998862 22 57899999999999997653 1 22334333345443 2
Q ss_pred -hHHHHHHHHhcc
Q 033044 89 -PQSLHQVIVGMD 100 (128)
Q Consensus 89 -~~~l~~~i~~l~ 100 (128)
++++.+++.+++
T Consensus 645 ~~~~La~aL~~ll 657 (694)
T PRK15179 645 TAPDVAEALARIH 657 (694)
T ss_pred ChHHHHHHHHHHH
Confidence 346777776654
No 110
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=95.92 E-value=0.013 Score=46.37 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=55.8
Q ss_pred cEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCE-EEeChHHHHHHHH
Q 033044 19 AVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHL-YCAHPQSLHQVIV 97 (128)
Q Consensus 19 ~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~-~~~~~~~l~~~i~ 97 (128)
++....-.+++.++|..||++||=-. +.+.|.+.+++|+|+......--.++...-.-+.....| ++.+.++|.++|.
T Consensus 253 ~i~~~~~~~~~~~ll~~aDiLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~~i~ 331 (369)
T PF04464_consen 253 NIIFVSDNEDIYDLLAAADILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIEAIE 331 (369)
T ss_dssp TEEE-TT-S-HHHHHHT-SEEEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHHHHT
T ss_pred cEEECCCCCCHHHHHHhcCEEEEech-hHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHHHHH
Confidence 45554445578999999999999997 599999999999999866410000000000112222223 4458899999988
Q ss_pred hcchh-------------cCCCCC-CCChHHHHHHHHH
Q 033044 98 GMDLK-------------SLLPYQ-PGDATPVAKLINR 121 (128)
Q Consensus 98 ~l~~~-------------~~~~~~-~~~~~~i~~~i~~ 121 (128)
+.... ..-.+. ..++++|++.|.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~k 369 (369)
T PF04464_consen 332 NIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIFK 369 (369)
T ss_dssp THHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhC
Confidence 75421 111232 3467777777653
No 111
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=95.85 E-value=0.099 Score=41.80 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=50.7
Q ss_pred ccEEEEeCh--hhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---eChHHH
Q 033044 18 LAVDCFTFS--SSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC---AHPQSL 92 (128)
Q Consensus 18 ~~~~v~~f~--~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~---~~~~~l 92 (128)
.++.+.+-. .++..+|..|+++||-++.+ +.|+.++|+|+|.+-. -|+. .+.|..+. .+++++
T Consensus 262 ~~v~l~~~l~~~~~l~Ll~~a~~vitdSSgg-i~EA~~lg~Pvv~l~~------R~e~-----~~~g~nvl~vg~~~~~I 329 (365)
T TIGR03568 262 PNFRLFKSLGQERYLSLLKNADAVIGNSSSG-IIEAPSFGVPTINIGT------RQKG-----RLRADSVIDVDPDKEEI 329 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCEEEEcChhH-HHhhhhcCCCEEeecC------Cchh-----hhhcCeEEEeCCCHHHH
Confidence 456766543 45889999999999999754 4999999999997731 2321 13343322 378999
Q ss_pred HHHHHhcch
Q 033044 93 HQVIVGMDL 101 (128)
Q Consensus 93 ~~~i~~l~~ 101 (128)
.+++.++++
T Consensus 330 ~~a~~~~~~ 338 (365)
T TIGR03568 330 VKAIEKLLD 338 (365)
T ss_pred HHHHHHHhC
Confidence 999888643
No 112
>PLN02846 digalactosyldiacylglycerol synthase
Probab=95.81 E-value=0.077 Score=44.08 Aligned_cols=100 Identities=10% Similarity=0.060 Sum_probs=60.6
Q ss_pred cccEEEEeChhhHHHHHhhccEEEec----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCE-EEeChHH
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISH----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHL-YCAHPQS 91 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIth----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~-~~~~~~~ 91 (128)
+.+.+++.-..+-+++++.+|++|.- +=..++.||+++|+|+|..-.+. + +.+.+.+-+ ...+.++
T Consensus 282 ~l~~~vf~G~~~~~~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~---~------~~v~~~~ng~~~~~~~~ 352 (462)
T PLN02846 282 ELDVRVYPGRDHADPLFHDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS---N------EFFKQFPNCRTYDDGKG 352 (462)
T ss_pred CCcEEEECCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC---c------ceeecCCceEecCCHHH
Confidence 33344443344567899999999876 33468999999999999996541 1 223223333 2347888
Q ss_pred HHHHHHhcchhcCCC-----CCCCChHHHHHHHHHhcCC
Q 033044 92 LHQVIVGMDLKSLLP-----YQPGDATPVAKLINRFLGF 125 (128)
Q Consensus 92 l~~~i~~l~~~~~~~-----~~~~~~~~i~~~i~~~~g~ 125 (128)
+.+++.+++...... ...-+-+.+++.+.+..++
T Consensus 353 ~a~ai~~~l~~~~~~~~~~a~~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 353 FVRATLKALAEEPAPLTDAQRHELSWEAATERFLRVADL 391 (462)
T ss_pred HHHHHHHHHccCchhHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 888888776422110 0123445566666665554
No 113
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=95.59 E-value=0.031 Score=42.51 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=36.7
Q ss_pred cEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCC
Q 033044 19 AVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 19 ~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
++.++.-.-++.++|..||.|||-.+ ++-+||+.+|||++++-.+
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~~VvtinS-tvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSDAVVTINS-TVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred CeEEECCCCCHHHHHHhCCEEEEECC-HHHHHHHHcCCceEEecCc
Confidence 34444444468999999999999999 4999999999999999554
No 114
>PLN02501 digalactosyldiacylglycerol synthase
Probab=95.46 E-value=0.063 Score=47.00 Aligned_cols=100 Identities=9% Similarity=0.022 Sum_probs=64.0
Q ss_pred CcccEEEEeChhhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCE-EEeChH
Q 033044 16 GLLAVDCFTFSSSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHL-YCAHPQ 90 (128)
Q Consensus 16 ~~~~~~v~~f~~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~-~~~~~~ 90 (128)
.+.++.+.++.++...+|+.+|++|.=+ =..++.||+++|+|+|....+. ... +..-+.+ ..-+++
T Consensus 599 LgL~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG----~e~-----V~~g~nGll~~D~E 669 (794)
T PLN02501 599 LDLNLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPS----NEF-----FRSFPNCLTYKTSE 669 (794)
T ss_pred cCCEEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCC----Cce-----EeecCCeEecCCHH
Confidence 3456778888888888999999988632 2468999999999999997652 111 1111222 234789
Q ss_pred HHHHHHHhcchhcCCC-----CCCCChHHHHHHHHHhcC
Q 033044 91 SLHQVIVGMDLKSLLP-----YQPGDATPVAKLINRFLG 124 (128)
Q Consensus 91 ~l~~~i~~l~~~~~~~-----~~~~~~~~i~~~i~~~~g 124 (128)
++.++|.+++...... ....+-+.+++.+.+...
T Consensus 670 afAeAI~~LLsd~~~rl~~~a~~~~SWeAaadrLle~~~ 708 (794)
T PLN02501 670 DFVAKVKEALANEPQPLTPEQRYNLSWEAATQRFMEYSD 708 (794)
T ss_pred HHHHHHHHHHhCchhhhHHHHHhhCCHHHHHHHHHHhhc
Confidence 9999988886532111 112344556665555443
No 115
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.42 E-value=0.063 Score=43.48 Aligned_cols=79 Identities=13% Similarity=0.121 Sum_probs=53.2
Q ss_pred ccEEEEeCh--hhHHHHHhhccEEEe-----cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE-EeCh
Q 033044 18 LAVDCFTFS--SSIADHLSSASLVIS-----HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLY-CAHP 89 (128)
Q Consensus 18 ~~~~v~~f~--~~~~~~~~~adlvIt-----haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~-~~~~ 89 (128)
.++++.+++ +++..+|+.||++|. |-| .++.|++++|+|+|..-.... - ............|+ +.++
T Consensus 305 ~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp---~-~~iv~~~~~g~~G~l~~d~ 379 (419)
T cd03806 305 DKVEFVVNAPFEELLEELSTASIGLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGP---L-LDIVVPWDGGPTGFLASTA 379 (419)
T ss_pred CeEEEecCCCHHHHHHHHHhCeEEEECCccCCcc-cHHHHHHHcCCcEEEEcCCCC---c-hheeeccCCCCceEEeCCH
Confidence 478888886 468999999999874 335 589999999999998754311 0 11110000222333 3489
Q ss_pred HHHHHHHHhcch
Q 033044 90 QSLHQVIVGMDL 101 (128)
Q Consensus 90 ~~l~~~i~~l~~ 101 (128)
+++.++|.++++
T Consensus 380 ~~la~ai~~ll~ 391 (419)
T cd03806 380 EEYAEAIEKILS 391 (419)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 116
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.03 E-value=0.16 Score=39.64 Aligned_cols=89 Identities=24% Similarity=0.259 Sum_probs=53.9
Q ss_pred HHHHhhccEEEecCch-HHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHHHHhcchhcCCCCC
Q 033044 30 ADHLSSASLVISHAGS-GSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVGMDLKSLLPYQ 108 (128)
Q Consensus 30 ~~~~~~adlvIthaG~-~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~~l~~~~~~~~~ 108 (128)
-++|++||.+|+-+-. +.++||++.|||+-++-.+.....--...-+.|.+.+++...+.+.+. +..-..+|
T Consensus 239 ~~~La~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~~~~~-----~e~ysy~P-- 311 (329)
T COG3660 239 IDMLAAADYIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEGSNLA-----LEEYSYKP-- 311 (329)
T ss_pred HHHHhhcceEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCcchhh-----hcccccCC--
Confidence 5789999988877654 557899999999866522211112223456666666666443332211 11112222
Q ss_pred CCChHHHHHHHHHhcCC
Q 033044 109 PGDATPVAKLINRFLGF 125 (128)
Q Consensus 109 ~~~~~~i~~~i~~~~g~ 125 (128)
-+.++++++.|..++|.
T Consensus 312 LnEt~RiA~~Ira~l~~ 328 (329)
T COG3660 312 LNETERIAEEIRAELGR 328 (329)
T ss_pred chHHHHHHHHHHHHhCC
Confidence 24688999999998874
No 117
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.84 E-value=0.083 Score=42.10 Aligned_cols=100 Identities=20% Similarity=0.151 Sum_probs=67.0
Q ss_pred cEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHH--HHHHHHHhC-CCEEEe--ChHHHH
Q 033044 19 AVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQS--ELAEELADR-KHLYCA--HPQSLH 93 (128)
Q Consensus 19 ~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~--~nA~~l~~~-g~~~~~--~~~~l~ 93 (128)
|..+.---.++.+.+.+||++|..+|. ..-.++-.|||+|-+|-. +.|. .+|++-.+. |..+.+ .+....
T Consensus 295 nc~l~lsqqsfadiLH~adaalgmAGT-AtEQavGLGkPvi~fPg~----GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a 369 (412)
T COG4370 295 NCSLWLSQQSFADILHAADAALGMAGT-ATEQAVGLGKPVIGFPGQ----GPQYNPGFAERQQRLLGASLTLVRPEAQAA 369 (412)
T ss_pred ceEEEEeHHHHHHHHHHHHHHHHhccc-hHHHhhccCCceeecCCC----CCCcChHHHHHHHHHhcceeeecCCchhhH
Confidence 445544456799999999999999994 566688999999999975 3454 466665554 777654 334444
Q ss_pred HHHHh-cch-----------hcCCCCCCCChHHHHHHHHHhc
Q 033044 94 QVIVG-MDL-----------KSLLPYQPGDATPVAKLINRFL 123 (128)
Q Consensus 94 ~~i~~-l~~-----------~~~~~~~~~~~~~i~~~i~~~~ 123 (128)
+.+.+ ++. -.++.-.+.++..|++.+.+..
T Consensus 370 ~~~~q~ll~dp~r~~air~nGqrRiGqaGaa~rIAe~l~e~a 411 (412)
T COG4370 370 AQAVQELLGDPQRLTAIRHNGQRRIGQAGAARRIAEELGEMA 411 (412)
T ss_pred HHHHHHHhcChHHHHHHHhcchhhccCcchHHHHHHHHHHhc
Confidence 44443 431 1233445577888888887754
No 118
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=94.38 E-value=0.18 Score=45.73 Aligned_cols=75 Identities=16% Similarity=0.153 Sum_probs=51.5
Q ss_pred ccEEEEeCh--hhHHHHHhhc----cEEEecC-----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 033044 18 LAVDCFTFS--SSIADHLSSA----SLVISHA-----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 18 ~~~~v~~f~--~~~~~~~~~a----dlvItha-----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
.++.+.+|. +++..+|+.| |++|.-+ | .++.||+++|+|+|.-..... .+.+....-|+.
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFG-LvlLEAMAcGlPVVASdvGG~--------~EII~~g~nGlL 618 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFG-LTLIEAAAHGLPMVATKNGGP--------VDIHRVLDNGLL 618 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCC-HHHHHHHHhCCCEEEeCCCCc--------HHHhccCCcEEE
Confidence 356777774 5689999988 5888753 5 599999999999999865421 122222223433
Q ss_pred e---ChHHHHHHHHhcch
Q 033044 87 A---HPQSLHQVIVGMDL 101 (128)
Q Consensus 87 ~---~~~~l~~~i~~l~~ 101 (128)
+ +++.|+++|.+++.
T Consensus 619 VdP~D~eaLA~AL~~LL~ 636 (1050)
T TIGR02468 619 VDPHDQQAIADALLKLVA 636 (1050)
T ss_pred ECCCCHHHHHHHHHHHhh
Confidence 3 78889988888753
No 119
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=94.32 E-value=0.17 Score=41.38 Aligned_cols=82 Identities=12% Similarity=0.072 Sum_probs=48.6
Q ss_pred ccEEEEe-Chhh-HHHHHhhccEEEecC---c-hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---C
Q 033044 18 LAVDCFT-FSSS-IADHLSSASLVISHA---G-SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---H 88 (128)
Q Consensus 18 ~~~~v~~-f~~~-~~~~~~~adlvItha---G-~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~ 88 (128)
.++.+.. |.++ +..+++.||++|.=+ | ..+++||+++|+|+|+-...... +.......-...+.|+.. +
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~--e~v~~~~~~~~~~~G~l~~~~d 423 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLA--DTVVDGDPEAESGTGFLFEEYD 423 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCcc--ceEecCCCCCCCCceEEeCCCC
Confidence 3455544 3333 678999999999532 2 24899999999999986554211 101000000111445443 7
Q ss_pred hHHHHHHHHhcch
Q 033044 89 PQSLHQVIVGMDL 101 (128)
Q Consensus 89 ~~~l~~~i~~l~~ 101 (128)
++.|.++|.+++.
T Consensus 424 ~~~la~~i~~~l~ 436 (473)
T TIGR02095 424 PGALLAALSRALR 436 (473)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887654
No 120
>PHA01630 putative group 1 glycosyl transferase
Probab=94.07 E-value=0.083 Score=41.74 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=31.4
Q ss_pred hhHHHHHhhccEEEe--cCc--hHHHHHHHHhCCCEEEEeCC
Q 033044 27 SSIADHLSSASLVIS--HAG--SGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 27 ~~~~~~~~~adlvIt--haG--~~Ti~E~l~~g~P~I~vP~~ 64 (128)
+++.++|+.||++|. +.. ..++.||+++|+|+|.....
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 579999999999984 322 56899999999999998654
No 121
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.03 E-value=0.1 Score=42.38 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=49.6
Q ss_pred ccEEE-EeChhh-HHHHHhhccEEEec-----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---
Q 033044 18 LAVDC-FTFSSS-IADHLSSASLVISH-----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA--- 87 (128)
Q Consensus 18 ~~~~v-~~f~~~-~~~~~~~adlvIth-----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~--- 87 (128)
.++.+ .+|.++ +..+++.||+++.- .| .+.+|++++|+|+|+-......+ .......-.+.|.|+..
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~g-l~~lEAma~G~pvI~~~~gg~~e--~v~~~~~~~~~~~G~~~~~~ 427 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCG-LTQMYAMRYGTVPIVRATGGLAD--TVIDYNEDTGEGTGFVFEGY 427 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCc-HHHHHHhhCCCCCEECcCCCccc--eEeCCcCCCCCCCeEEeCCC
Confidence 35554 455543 56899999999953 24 58899999999999765542211 01000000123355543
Q ss_pred ChHHHHHHHHhcch
Q 033044 88 HPQSLHQVIVGMDL 101 (128)
Q Consensus 88 ~~~~l~~~i~~l~~ 101 (128)
++++|.++|.+++.
T Consensus 428 ~~~~l~~~i~~~l~ 441 (476)
T cd03791 428 NADALLAALRRALA 441 (476)
T ss_pred CHHHHHHHHHHHHH
Confidence 67888888887753
No 122
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=93.87 E-value=0.75 Score=33.44 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=45.6
Q ss_pred EEEEeChhhHHHHHhhccEEEec-CchHHHHHHHH---------hCCCEEEEeCCCCCCchHHHHHHHHHhCCCE-----
Q 033044 20 VDCFTFSSSIADHLSSASLVISH-AGSGSIFETLR---------LGKPLIVVVNEDLMDNHQSELAEELADRKHL----- 84 (128)
Q Consensus 20 ~~v~~f~~~~~~~~~~adlvIth-aG~~Ti~E~l~---------~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~----- 84 (128)
+.+..+......++..||.+|.- +|.||+.|++. +.||++++=..... ++-...-+.+.+.|..
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~-~~l~~~l~~~~~~gfi~~~~~ 159 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHF-DGLVEWLKYSIQEGFISESHL 159 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchH-HHHHHHHHHHHHCCCCCHHHc
Confidence 34444444566778889977665 67899999864 39999888432211 2333344466666643
Q ss_pred ----EEeChHHHHHHHH
Q 033044 85 ----YCAHPQSLHQVIV 97 (128)
Q Consensus 85 ----~~~~~~~l~~~i~ 97 (128)
++-+++++.+.|+
T Consensus 160 ~~~~~~d~~~e~~~~i~ 176 (178)
T TIGR00730 160 KLIHVVSRPDELIEQVQ 176 (178)
T ss_pred CcEEEcCCHHHHHHHHH
Confidence 1125666666554
No 123
>PRK14098 glycogen synthase; Provisional
Probab=93.76 E-value=0.17 Score=42.08 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=50.6
Q ss_pred cccEEEEeChhh--HHHHHhhccEEEecC-----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--
Q 033044 17 LLAVDCFTFSSS--IADHLSSASLVISHA-----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-- 87 (128)
Q Consensus 17 ~~~~~v~~f~~~--~~~~~~~adlvItha-----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-- 87 (128)
+.++.+.++.++ +.++++.||+++.-+ | .+.+|++++|+|.|+.......+.-+ ......+-+++.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~G-l~~lEAma~G~ppVv~~~GGl~d~v~----~~~~~~~~G~l~~~ 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCG-MLQMFAMSYGTIPVAYAGGGIVETIE----EVSEDKGSGFIFHD 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCch-HHHHHHHhCCCCeEEecCCCCceeee----cCCCCCCceeEeCC
Confidence 346777776644 688999999998543 4 58899999999998875432211100 000112344443
Q ss_pred -ChHHHHHHHHhcc
Q 033044 88 -HPQSLHQVIVGMD 100 (128)
Q Consensus 88 -~~~~l~~~i~~l~ 100 (128)
+++.|.++|.+++
T Consensus 436 ~d~~~la~ai~~~l 449 (489)
T PRK14098 436 YTPEALVAKLGEAL 449 (489)
T ss_pred CCHHHHHHHHHHHH
Confidence 7888988887754
No 124
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=93.11 E-value=1.1 Score=32.67 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=39.6
Q ss_pred hcc-EEEecCchHHHH----------------HHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 033044 35 SAS-LVISHAGSGSIF----------------ETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 35 ~ad-lvIthaG~~Ti~----------------E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
+|| ++|.=|-++|+. .+++.++|++++|.......-+.+|.+.|.+.|+.++
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii 143 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIIL 143 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEE
Confidence 466 556666666665 3577899999999876655566789999999998875
No 125
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=93.08 E-value=0.28 Score=42.10 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=39.5
Q ss_pred HHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh
Q 033044 30 ADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD 80 (128)
Q Consensus 30 ~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~ 80 (128)
.++|+.||++++.+|. .+.|++.+|+|+|++=.. +.=-...|+++.+
T Consensus 483 ~~~m~aaD~aLaaSGT-aTLEaAL~g~PmVV~YK~---s~Lty~Iak~Lvk 529 (608)
T PRK01021 483 YELMRECDCALAKCGT-IVLETALNQTPTIVTCQL---RPFDTFLAKYIFK 529 (608)
T ss_pred HHHHHhcCeeeecCCH-HHHHHHHhCCCEEEEEec---CHHHHHHHHHHHh
Confidence 6899999999999995 788999999999998654 2345678888887
No 126
>PRK00654 glgA glycogen synthase; Provisional
Probab=92.87 E-value=0.33 Score=39.79 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=48.7
Q ss_pred cEE-EEeChhh-HHHHHhhccEEEec-----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---C
Q 033044 19 AVD-CFTFSSS-IADHLSSASLVISH-----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---H 88 (128)
Q Consensus 19 ~~~-v~~f~~~-~~~~~~~adlvIth-----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~ 88 (128)
++. ..+|.++ +..+++.||++|.= .| .+++||+++|+|+|+-...... +.........+.+.|+.. +
T Consensus 338 ~v~~~~g~~~~~~~~~~~~aDv~v~PS~~E~~g-l~~lEAma~G~p~V~~~~gG~~--e~v~~~~~~~~~~~G~lv~~~d 414 (466)
T PRK00654 338 KVGVQIGYDEALAHRIYAGADMFLMPSRFEPCG-LTQLYALRYGTLPIVRRTGGLA--DTVIDYNPEDGEATGFVFDDFN 414 (466)
T ss_pred cEEEEEeCCHHHHHHHHhhCCEEEeCCCCCCch-HHHHHHHHCCCCEEEeCCCCcc--ceeecCCCCCCCCceEEeCCCC
Confidence 444 3567554 56889999999964 24 5899999999999986543211 100000000122445543 7
Q ss_pred hHHHHHHHHhcc
Q 033044 89 PQSLHQVIVGMD 100 (128)
Q Consensus 89 ~~~l~~~i~~l~ 100 (128)
++.|.++|.+++
T Consensus 415 ~~~la~~i~~~l 426 (466)
T PRK00654 415 AEDLLRALRRAL 426 (466)
T ss_pred HHHHHHHHHHHH
Confidence 888888887764
No 127
>PRK10125 putative glycosyl transferase; Provisional
Probab=92.71 E-value=0.28 Score=39.70 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=36.4
Q ss_pred cEEEEeCh---hhHHHHHhhccEEEecC----chHHHHHHHHhCCCEEEEeCC
Q 033044 19 AVDCFTFS---SSIADHLSSASLVISHA----GSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 19 ~~~v~~f~---~~~~~~~~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~ 64 (128)
+++..+|. .++.++|+.||++|.-+ -..++.||+++|+|+|.-...
T Consensus 287 ~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~g 339 (405)
T PRK10125 287 NVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSD 339 (405)
T ss_pred ceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCC
Confidence 46666765 35788999999988643 346899999999999999775
No 128
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=92.68 E-value=0.23 Score=40.33 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=53.3
Q ss_pred hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-----------------eChH
Q 033044 28 SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-----------------AHPQ 90 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-----------------~~~~ 90 (128)
+-.+.|..||+.+..+|. .+.|++.+|+|+|+.-.. +.--...|+++.+..+.-. ++++
T Consensus 257 ~~~~a~~~aD~al~aSGT-~tLE~aL~g~P~Vv~Yk~---~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe 332 (381)
T COG0763 257 EKRKAFAAADAALAASGT-ATLEAALAGTPMVVAYKV---KPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPE 332 (381)
T ss_pred hHHHHHHHhhHHHHhccH-HHHHHHHhCCCEEEEEec---cHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHH
Confidence 346799999999999995 788999999999999665 3344678888887765411 1577
Q ss_pred HHHHHHHhcch
Q 033044 91 SLHQVIVGMDL 101 (128)
Q Consensus 91 ~l~~~i~~l~~ 101 (128)
.|..++..++.
T Consensus 333 ~la~~l~~ll~ 343 (381)
T COG0763 333 NLARALEELLL 343 (381)
T ss_pred HHHHHHHHHhc
Confidence 88888777754
No 129
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=92.67 E-value=0.24 Score=41.75 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=53.3
Q ss_pred ccEEEEeChh--hHHHHHhhccEEEecC---chHHHHHHHHhCCCEEEE-eCCCCCCchHHHHHHHHHhCCCEEEeChHH
Q 033044 18 LAVDCFTFSS--SIADHLSSASLVISHA---GSGSIFETLRLGKPLIVV-VNEDLMDNHQSELAEELADRKHLYCAHPQS 91 (128)
Q Consensus 18 ~~~~v~~f~~--~~~~~~~~adlvItha---G~~Ti~E~l~~g~P~I~v-P~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~ 91 (128)
..+++.+|.+ ++.+.+..|.++|.-+ |-+|.+||+++|+|+|-. |.....++ +.|. ++-+.++
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqInyg~~~~V~d~----------~NG~-li~d~~~ 477 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQINKVETDYVEHN----------KNGY-IIDDISE 477 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeeecCCceeeEcC----------CCcE-EeCCHHH
Confidence 4788899888 8999999999999865 778999999999999921 22111110 1233 3368888
Q ss_pred HHHHHHhcch
Q 033044 92 LHQVIVGMDL 101 (128)
Q Consensus 92 l~~~i~~l~~ 101 (128)
|.++|..++.
T Consensus 478 l~~al~~~L~ 487 (519)
T TIGR03713 478 LLKALDYYLD 487 (519)
T ss_pred HHHHHHHHHh
Confidence 8888877764
No 130
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=92.19 E-value=2 Score=29.45 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=36.8
Q ss_pred EEEEeChhhHHHHHhhccEEE-ecCchHHHHHHHHh---------CC-CEEEEeCCCCCCchHHHHHHHHHhCCC
Q 033044 20 VDCFTFSSSIADHLSSASLVI-SHAGSGSIFETLRL---------GK-PLIVVVNEDLMDNHQSELAEELADRKH 83 (128)
Q Consensus 20 ~~v~~f~~~~~~~~~~adlvI-thaG~~Ti~E~l~~---------g~-P~I~vP~~~~~~~~Q~~nA~~l~~~g~ 83 (128)
+.+..+......++..||.+| .-||.||+.|+... .+ |+|++=.....+ +=...-+.+.+.|.
T Consensus 38 ~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~-~l~~~l~~~~~~g~ 111 (133)
T PF03641_consen 38 IIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWD-PLLEFLDRMIEEGF 111 (133)
T ss_dssp EEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCH-HHHHHHHHHHHTTS
T ss_pred eEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHH-HHHHHHHHHHHCCC
Confidence 344444555677888999655 55678999988743 45 888885432111 22223345566664
No 131
>PLN02939 transferase, transferring glycosyl groups
Probab=91.57 E-value=0.72 Score=41.72 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=50.4
Q ss_pred ccEEEEeChhh--HHHHHhhccEEEec-----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEE---
Q 033044 18 LAVDCFTFSSS--IADHLSSASLVISH-----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD-RKHLYC--- 86 (128)
Q Consensus 18 ~~~~v~~f~~~--~~~~~~~adlvIth-----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~-~g~~~~--- 86 (128)
.++.+..+.++ ...+++.||++|.- +| .+++||+++|+|.|+.......+--...+...+.. .+-|+.
T Consensus 837 drV~FlG~~de~lah~IYAaADIFLmPSr~EPfG-LvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~ 915 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDMFIIPSMFEPCG-LTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT 915 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCEEEECCCccCCc-HHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC
Confidence 35777777665 35799999999964 36 58999999999999876543211000000011111 123433
Q ss_pred eChHHHHHHHHhcc
Q 033044 87 AHPQSLHQVIVGMD 100 (128)
Q Consensus 87 ~~~~~l~~~i~~l~ 100 (128)
.+++.|.++|.+++
T Consensus 916 ~D~eaLa~AL~rAL 929 (977)
T PLN02939 916 PDEQGLNSALERAF 929 (977)
T ss_pred CCHHHHHHHHHHHH
Confidence 27888888887664
No 132
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=91.54 E-value=1 Score=31.50 Aligned_cols=64 Identities=23% Similarity=0.389 Sum_probs=39.3
Q ss_pred HHHHhhccEEEecCc-----hHHHHH---HHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHHHHh
Q 033044 30 ADHLSSASLVISHAG-----SGSIFE---TLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVG 98 (128)
Q Consensus 30 ~~~~~~adlvIthaG-----~~Ti~E---~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~~ 98 (128)
..+|.+||+||.+-| .++.++ |+++|||.|++--+.+. |-. +.+...-.+.+-+++++.+.|+-
T Consensus 67 ~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~--HpL---KEvda~A~a~~et~~Qvv~iL~Y 138 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELH--HPL---KEVDAAALAVAETPEQVVEILRY 138 (141)
T ss_pred HHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhcc--ccH---HHHhHhhHhhhCCHHHHHHHHHH
Confidence 578999999999998 345554 56899999999443221 111 11111112334577777776653
No 133
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.47 E-value=1.2 Score=35.64 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=46.2
Q ss_pred HHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-ChHHHHHHHHhcc
Q 033044 31 DHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-HPQSLHQVIVGMD 100 (128)
Q Consensus 31 ~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-~~~~l~~~i~~l~ 100 (128)
.++-.|+++|+-||. ...||+..|+|+|.+= | +.-...-+++.+.|.-+.. ++.+.-+...+++
T Consensus 248 ~Llyya~lvig~ggT-MarEaAlLGtpaIs~~-p----Gkll~vdk~lie~G~~~~s~~~~~~~~~a~~~l 312 (346)
T COG1817 248 SLLYYATLVIGAGGT-MAREAALLGTPAISCY-P----GKLLAVDKYLIEKGLLYHSTDEIAIVEYAVRNL 312 (346)
T ss_pred HHHhhhheeecCCch-HHHHHHHhCCceEEec-C----CccccccHHHHhcCceeecCCHHHHHHHHHHHh
Confidence 588999999998884 7899999999999993 3 2234566788889988763 5544444333333
No 134
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=91.44 E-value=0.7 Score=38.60 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=36.0
Q ss_pred cEEEEeChh--hHHHHHhhccEEEe---cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCE
Q 033044 19 AVDCFTFSS--SIADHLSSASLVIS---HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHL 84 (128)
Q Consensus 19 ~~~v~~f~~--~~~~~~~~adlvIt---haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~ 84 (128)
++.+.+..+ +.-..++.+|+++= ..|.+|.+|++++|+|+|..|-... -.+.-|..|...|+.
T Consensus 343 Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~---~sR~~aSiL~~lGl~ 410 (468)
T PF13844_consen 343 RIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETM---ASRVGASILRALGLP 410 (468)
T ss_dssp GEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSG---GGSHHHHHHHHHT-G
T ss_pred hEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCc---hhHHHHHHHHHcCCc
Confidence 466666543 23356677999873 4577899999999999999997643 234566777777876
No 135
>PLN02949 transferase, transferring glycosyl groups
Probab=91.17 E-value=0.52 Score=39.05 Aligned_cols=80 Identities=13% Similarity=0.025 Sum_probs=51.9
Q ss_pred ccEEEEeCh--hhHHHHHhhccEEEe-----cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChH
Q 033044 18 LAVDCFTFS--SSIADHLSSASLVIS-----HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQ 90 (128)
Q Consensus 18 ~~~~v~~f~--~~~~~~~~~adlvIt-----haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~ 90 (128)
.++++.+++ +++.++|++||++|. |-| .++.|++++|+|+|......... +....... ...|. .+.+++
T Consensus 335 ~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FG-ivvlEAMA~G~PVIa~~~gGp~~-eIV~~~~~-g~tG~-l~~~~~ 410 (463)
T PLN02949 335 GDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFG-ISVVEYMAAGAVPIAHNSAGPKM-DIVLDEDG-QQTGF-LATTVE 410 (463)
T ss_pred CcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCC-hHHHHHHHcCCcEEEeCCCCCcc-eeeecCCC-Ccccc-cCCCHH
Confidence 468888887 568999999999983 235 48999999999999986542110 00000000 01122 224788
Q ss_pred HHHHHHHhcch
Q 033044 91 SLHQVIVGMDL 101 (128)
Q Consensus 91 ~l~~~i~~l~~ 101 (128)
++.++|.++++
T Consensus 411 ~la~ai~~ll~ 421 (463)
T PLN02949 411 EYADAILEVLR 421 (463)
T ss_pred HHHHHHHHHHh
Confidence 99998888753
No 136
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=90.95 E-value=0.83 Score=37.81 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=44.7
Q ss_pred hhHHHHHhhccEEEecC---c-hHHHHHHHHhCCC----EEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChHHHHHHH
Q 033044 27 SSIADHLSSASLVISHA---G-SGSIFETLRLGKP----LIVVVNEDLMDNHQSELAEELADRKHLYC--AHPQSLHQVI 96 (128)
Q Consensus 27 ~~~~~~~~~adlvItha---G-~~Ti~E~l~~g~P----~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~~~l~~~i 96 (128)
+++..+|+.||+++.-+ | ..++.|++++|+| +|+--.... .+ .+. ++.++ .+++.++++|
T Consensus 347 ~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~--~~------~l~--~gllVnP~d~~~lA~aI 416 (456)
T TIGR02400 347 EELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA--AQ------ELN--GALLVNPYDIDGMADAI 416 (456)
T ss_pred HHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCC--hH------HhC--CcEEECCCCHHHHHHHH
Confidence 56899999999999743 4 3588999999999 555544321 12 222 33333 2789999999
Q ss_pred Hhcch
Q 033044 97 VGMDL 101 (128)
Q Consensus 97 ~~l~~ 101 (128)
.++++
T Consensus 417 ~~aL~ 421 (456)
T TIGR02400 417 ARALT 421 (456)
T ss_pred HHHHc
Confidence 88754
No 137
>PRK14099 glycogen synthase; Provisional
Probab=90.93 E-value=0.72 Score=38.33 Aligned_cols=76 Identities=13% Similarity=0.091 Sum_probs=46.4
Q ss_pred EEEeChhhHHHHH-hhccEEEecC----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHH-Hh--CCCEEEe---Ch
Q 033044 21 DCFTFSSSIADHL-SSASLVISHA----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEEL-AD--RKHLYCA---HP 89 (128)
Q Consensus 21 ~v~~f~~~~~~~~-~~adlvItha----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l-~~--~g~~~~~---~~ 89 (128)
.+.+|.+++..+| +.||+++.-+ =..+.+||+++|+|.|+-...... +........ +. .+.|+.. ++
T Consensus 354 ~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~--d~V~~~~~~~~~~~~~~G~l~~~~d~ 431 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLA--DTVVDANEMAIATGVATGVQFSPVTA 431 (485)
T ss_pred EEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCcc--ceeecccccccccCCCceEEeCCCCH
Confidence 5778888888887 5699998521 135899999999887775433211 111111001 11 1234443 78
Q ss_pred HHHHHHHHh
Q 033044 90 QSLHQVIVG 98 (128)
Q Consensus 90 ~~l~~~i~~ 98 (128)
+.|.++|.+
T Consensus 432 ~~La~ai~~ 440 (485)
T PRK14099 432 DALAAALRK 440 (485)
T ss_pred HHHHHHHHH
Confidence 889988876
No 138
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=90.20 E-value=1.3 Score=31.05 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=38.8
Q ss_pred HHHHhhccEEEecCc-----hHHHHH---HHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHHHHh
Q 033044 30 ADHLSSASLVISHAG-----SGSIFE---TLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVG 98 (128)
Q Consensus 30 ~~~~~~adlvIthaG-----~~Ti~E---~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~~ 98 (128)
..+|.+||+||.+-| .++.++ ++++|||.|++-.+.+...=-+..|.. .+.+-+|+++.+.++-
T Consensus 70 ~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA-----~avaetp~Qvv~iL~Y 141 (144)
T TIGR03646 70 RKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKA-----QAVVETPEQAIETLKY 141 (144)
T ss_pred HHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHHH-----HHHhcCHHHHHHHHHH
Confidence 578999999999988 345544 568999999994443211111112221 2233477777666653
No 139
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=90.07 E-value=1.9 Score=38.32 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=48.0
Q ss_pred ccEEEEeCh---hhHHHHHh----hccEEEecC-----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 033044 18 LAVDCFTFS---SSIADHLS----SASLVISHA-----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLY 85 (128)
Q Consensus 18 ~~~~v~~f~---~~~~~~~~----~adlvItha-----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~ 85 (128)
-++++.++. .+..++++ .+|++|.=+ | .|+.||+++|+|+|.-... + ..+.+.+..-|+
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFG-LvvLEAMAcGlPVVAT~~G----G----~~EiV~dg~tGf 689 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFG-LTVLEAMTCGLPTFATRFG----G----PLEIIQDGVSGF 689 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCC-HHHHHHHHcCCCEEEcCCC----C----HHHHhcCCCcEE
Confidence 367777764 23445554 346877543 5 5999999999999986543 2 334444444455
Q ss_pred Ee---ChHHHHHHHHhcc
Q 033044 86 CA---HPQSLHQVIVGMD 100 (128)
Q Consensus 86 ~~---~~~~l~~~i~~l~ 100 (128)
.+ +++.+.++|.+++
T Consensus 690 LVdp~D~eaLA~aL~~ll 707 (784)
T TIGR02470 690 HIDPYHGEEAAEKIVDFF 707 (784)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 44 6788888887764
No 140
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=88.76 E-value=0.78 Score=30.35 Aligned_cols=35 Identities=31% Similarity=0.595 Sum_probs=26.9
Q ss_pred HHHHhhccEEEe---c--CchHHHHHHH---HhCCCEEEEeCC
Q 033044 30 ADHLSSASLVIS---H--AGSGSIFETL---RLGKPLIVVVNE 64 (128)
Q Consensus 30 ~~~~~~adlvIt---h--aG~~Ti~E~l---~~g~P~I~vP~~ 64 (128)
-+.|.+||+||. . .+.||.+|+- +.|||++++-..
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 378999998874 2 6789999964 789999999664
No 141
>PRK09932 glycerate kinase II; Provisional
Probab=88.34 E-value=2.1 Score=34.89 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=52.0
Q ss_pred hHHHHHhhccEEEecCc-----------hHHHHH-HHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe----ChHH
Q 033044 28 SIADHLSSASLVISHAG-----------SGSIFE-TLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA----HPQS 91 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG-----------~~Ti~E-~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~----~~~~ 91 (128)
++++.++.||+|||-=| ...+.. +-.+++|+|++--. ++ .+.+.+.+.|+.-+. .+..
T Consensus 277 ~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~--~~----~~~~~~~~~g~~~~~~i~~~~~~ 350 (381)
T PRK09932 277 NLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV--LG----DGVEVVHQYGIDAVFSILPRLAP 350 (381)
T ss_pred ChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecc--cC----CChHHHHhcCceEEEEcCCCCCC
Confidence 58899999999999887 233443 44678999998532 11 123456677765332 3445
Q ss_pred HHHHHHhcchhcCCCCCCCChHHHHHHHHHhcCCCC
Q 033044 92 LHQVIVGMDLKSLLPYQPGDATPVAKLINRFLGFPD 127 (128)
Q Consensus 92 l~~~i~~l~~~~~~~~~~~~~~~i~~~i~~~~g~~~ 127 (128)
|.+++++..+.. ...++++++.+.--.|++|
T Consensus 351 l~~a~~~~~~~l-----~~~~~~~~~~~~~~~~~~~ 381 (381)
T PRK09932 351 LAEVLASGETNL-----FNSARNIACAIKIGQGIKN 381 (381)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHhhccCCC
Confidence 666665542211 1235556665532255554
No 142
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=88.27 E-value=0.72 Score=35.80 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=31.1
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
+.++..+++.||++||--. |.+.=|.+.|+|+|.+
T Consensus 244 L~elaali~~a~l~I~nDS-Gp~HlA~A~g~p~val 278 (322)
T PRK10964 244 LEQVARVLAGAKAVVSVDT-GLSHLTAALDRPNITL 278 (322)
T ss_pred HHHHHHHHHhCCEEEecCC-cHHHHHHHhCCCEEEE
Confidence 4578899999999999887 5788899999999988
No 143
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=87.78 E-value=1.7 Score=31.51 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=49.2
Q ss_pred ccEEEEeChh--hHHHHHhhccEEEecC---c-hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC--CCEEEe--
Q 033044 18 LAVDCFTFSS--SIADHLSSASLVISHA---G-SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR--KHLYCA-- 87 (128)
Q Consensus 18 ~~~~v~~f~~--~~~~~~~~adlvItha---G-~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~--g~~~~~-- 87 (128)
.++...++.+ ++..+++.||+++.-. | ..++.|++++|+|+|.-..+. ..+.+... |. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~--------~~e~~~~~~~g~-~~~~~ 327 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGG--------IPEVVEDGETGL-LVPPG 327 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCCC--------hHHHhcCCCceE-ecCCC
Confidence 4567778776 6788899899888772 2 245799999999998876641 12222222 34 332
Q ss_pred ChHHHHHHHHhcc
Q 033044 88 HPQSLHQVIVGMD 100 (128)
Q Consensus 88 ~~~~l~~~i~~l~ 100 (128)
+.+.+.+++..+.
T Consensus 328 ~~~~~~~~i~~~~ 340 (381)
T COG0438 328 DVEELADALEQLL 340 (381)
T ss_pred CHHHHHHHHHHHh
Confidence 3678888777664
No 144
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=87.51 E-value=2.7 Score=29.84 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=25.9
Q ss_pred HHHHhhccEEEe-cCchHHHHH---HHHhCCCEEEEeCCC
Q 033044 30 ADHLSSASLVIS-HAGSGSIFE---TLRLGKPLIVVVNED 65 (128)
Q Consensus 30 ~~~~~~adlvIt-haG~~Ti~E---~l~~g~P~I~vP~~~ 65 (128)
..++..||.+|. -+|.||+.| ++.++||+++++...
T Consensus 86 ~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~g 125 (159)
T TIGR00725 86 FILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGTG 125 (159)
T ss_pred HHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECCC
Confidence 456677885554 467777765 567999999998764
No 145
>PLN02316 synthase/transferase
Probab=87.36 E-value=2.7 Score=38.42 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=49.0
Q ss_pred cEEEEeChhh-H-HHHHhhccEEEecC-----chHHHHHHHHhCCCEEEEeCCCCCC----c-hHHHHHHHHHhCCCEEE
Q 033044 19 AVDCFTFSSS-I-ADHLSSASLVISHA-----GSGSIFETLRLGKPLIVVVNEDLMD----N-HQSELAEELADRKHLYC 86 (128)
Q Consensus 19 ~~~v~~f~~~-~-~~~~~~adlvItha-----G~~Ti~E~l~~g~P~I~vP~~~~~~----~-~Q~~nA~~l~~~g~~~~ 86 (128)
++.++.+.++ + +.+|+.||+++.-+ | .+.+||+++|+|.|+-......+ . ++...++.-...+-|+.
T Consensus 901 rV~f~g~~de~lah~iyaaADiflmPS~~EP~G-LvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGfl 979 (1036)
T PLN02316 901 RARLCLTYDEPLSHLIYAGADFILVPSIFEPCG-LTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFS 979 (1036)
T ss_pred eEEEEecCCHHHHHHHHHhCcEEEeCCcccCcc-HHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEE
Confidence 4555544444 3 47999999999543 6 59999999999999865542211 0 00001110000123444
Q ss_pred e---ChHHHHHHHHhcch
Q 033044 87 A---HPQSLHQVIVGMDL 101 (128)
Q Consensus 87 ~---~~~~l~~~i~~l~~ 101 (128)
. +++.|..+|.+++.
T Consensus 980 f~~~d~~aLa~AL~raL~ 997 (1036)
T PLN02316 980 FDGADAAGVDYALNRAIS 997 (1036)
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 3 78888888888764
No 146
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=87.11 E-value=1.3 Score=36.50 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=43.2
Q ss_pred hhhHHHHHhhccEEEec---Cc-hHHHHHHHHhCCC---EEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChHHHHHHH
Q 033044 26 SSSIADHLSSASLVISH---AG-SGSIFETLRLGKP---LIVVVNEDLMDNHQSELAEELADRKHLYC--AHPQSLHQVI 96 (128)
Q Consensus 26 ~~~~~~~~~~adlvIth---aG-~~Ti~E~l~~g~P---~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~~~l~~~i 96 (128)
.+++..+|+.||++|.- =| ..++.|++++|+| +|++...... .++ . .+..++ -+++.++++|
T Consensus 351 ~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~-~~~-------~-~~g~lv~p~d~~~la~ai 421 (460)
T cd03788 351 REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA-AEE-------L-SGALLVNPYDIDEVADAI 421 (460)
T ss_pred HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccc-hhh-------c-CCCEEECCCCHHHHHHHH
Confidence 35799999999999952 23 3578999999999 4444332110 111 1 222233 2788999999
Q ss_pred Hhcch
Q 033044 97 VGMDL 101 (128)
Q Consensus 97 ~~l~~ 101 (128)
.+++.
T Consensus 422 ~~~l~ 426 (460)
T cd03788 422 HRALT 426 (460)
T ss_pred HHHHc
Confidence 88754
No 147
>PLN00142 sucrose synthase
Probab=86.94 E-value=3.3 Score=36.94 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=40.0
Q ss_pred HHHHHh-hccEEEecC-----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChHHHHHHHHhc
Q 033044 29 IADHLS-SASLVISHA-----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA---HPQSLHQVIVGM 99 (128)
Q Consensus 29 ~~~~~~-~adlvItha-----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~~~~l~~~i~~l 99 (128)
+..+++ .+|++|.-+ | .|+.||+++|+|+|.-... + ..+.+.+..-|+.+ +++.+.++|.++
T Consensus 659 Lyr~iadaaDVfVlPS~~EgFG-LvvLEAMA~GlPVVATdvG----G----~~EIV~dG~tG~LV~P~D~eaLA~aI~~l 729 (815)
T PLN00142 659 LYRYIADTKGAFVQPALYEAFG-LTVVEAMTCGLPTFATCQG----G----PAEIIVDGVSGFHIDPYHGDEAANKIADF 729 (815)
T ss_pred HHHHHHhhCCEEEeCCcccCCC-HHHHHHHHcCCCEEEcCCC----C----HHHHhcCCCcEEEeCCCCHHHHHHHHHHH
Confidence 445555 468887542 5 5999999999999886543 2 22333333345543 678888887654
No 148
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=86.82 E-value=4.6 Score=33.24 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=48.5
Q ss_pred hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE------eChHHHHHHHHhcch
Q 033044 28 SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC------AHPQSLHQVIVGMDL 101 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~------~~~~~l~~~i~~l~~ 101 (128)
++..++++||++|+.==++++. ++..|+|.|.+++. ......+...|+.-+ ++.++|.+.+.++++
T Consensus 320 e~~~iIs~~dl~ig~RlHa~I~-a~~~gvP~i~i~Y~-------~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 320 EMGKILGACELTVGTRLHSAII-SMNFGTPAIAINYE-------HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLG 391 (426)
T ss_pred HHHHHHhhCCEEEEecchHHHH-HHHcCCCEEEeeeh-------HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHh
Confidence 4668999999999977665444 89999999999983 345666677776632 256677777776654
No 149
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=86.21 E-value=1.8 Score=31.50 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=32.1
Q ss_pred hhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeC
Q 033044 27 SSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVN 63 (128)
Q Consensus 27 ~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~ 63 (128)
.++.+++++|+++||.-=++++. ++.+|+|.|.+.+
T Consensus 249 ~~~~~~~~~~~~~Is~RlH~~I~-a~~~g~P~i~i~y 284 (286)
T PF04230_consen 249 DELLELISQADLVISMRLHGAIL-ALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHHhcCCEEEecCCHHHHH-HHHcCCCEEEEec
Confidence 56889999999999999987666 9999999999976
No 150
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=86.06 E-value=2.7 Score=34.77 Aligned_cols=76 Identities=8% Similarity=0.131 Sum_probs=50.8
Q ss_pred ccEEEEe-Chh-hHHHHHhhccEE--Eec--CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChH
Q 033044 18 LAVDCFT-FSS-SIADHLSSASLV--ISH--AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-AHPQ 90 (128)
Q Consensus 18 ~~~~v~~-f~~-~~~~~~~~adlv--Ith--aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~~~~ 90 (128)
.|+.+++ |.+ ++.+++..||+. |+| +-..++.||+.+|+|++..=...+ .+..... |..+. -+++
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~~-----g~l~~~~~~~ 399 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIAS-----ENIFEHNEVD 399 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---CcccccC-----CceecCCCHH
Confidence 4555554 466 899999999955 455 445789999999999999866532 1121221 44332 3778
Q ss_pred HHHHHHHhcch
Q 033044 91 SLHQVIVGMDL 101 (128)
Q Consensus 91 ~l~~~i~~l~~ 101 (128)
++.++|.+++.
T Consensus 400 ~m~~~i~~lL~ 410 (438)
T TIGR02919 400 QLISKLKDLLN 410 (438)
T ss_pred HHHHHHHHHhc
Confidence 88888877753
No 151
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=85.89 E-value=0.39 Score=34.46 Aligned_cols=30 Identities=17% Similarity=0.374 Sum_probs=20.9
Q ss_pred hhccEEEecCchHHHHHHHHhCCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
..+|++|||||...+..-.. ++|+|-+|..
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 66999999999877777666 9999999985
No 152
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.96 E-value=2.5 Score=33.40 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=38.5
Q ss_pred HHHhhccEEEecCchHHHHHHHHh----CCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChHHHHHHHHhcch
Q 033044 31 DHLSSASLVISHAGSGSIFETLRL----GKPLIVVVNEDLMDNHQSELAEELADRKHLYC--AHPQSLHQVIVGMDL 101 (128)
Q Consensus 31 ~~~~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~~~l~~~i~~l~~ 101 (128)
...+.+|++|+=||=||+..++.. ++|++.|... + .++. .+++++.++++++.+
T Consensus 68 ~~~~~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G-----~------------lGFL~~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 68 DAADGCELVLVLGGDGTILRAAELARAADVPVLGVNLG-----H------------VGFLAEAEAEDLDEAVERVVD 127 (306)
T ss_pred hcccCCCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC-----C------------CceeccCCHHHHHHHHHHHHc
Confidence 334568999999999999998764 7898888653 1 3333 356777777776653
No 153
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=84.92 E-value=4.8 Score=30.15 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=40.3
Q ss_pred HhhccEEEec---Cc-hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHH
Q 033044 33 LSSASLVISH---AG-SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQV 95 (128)
Q Consensus 33 ~~~adlvIth---aG-~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~ 95 (128)
++.+=+|+.. +| ..|+..++..|+|+..+|-.. ++.+..=...|-+.|+..+.+.+++.+.
T Consensus 155 ls~~vivve~~~~sGtl~ta~~A~~~gr~v~~~pg~~--~~~~~~G~~~Li~~GA~~i~~~~d~~~~ 219 (220)
T TIGR00732 155 LSRAVLVVEAPLKSGALITARYALEQGREVFAYPGDL--NSPESDGCHKLIEQGAALITSAKDILET 219 (220)
T ss_pred hcCEEEEEECCCCCchHHHHHHHHHhCCcEEEEcCCC--CCccchHHHHHHHCCCEEECCHHHHHHh
Confidence 4444455543 23 356667788999999998652 3445555566778898887888887653
No 154
>PRK05920 aromatic acid decarboxylase; Validated
Probab=83.96 E-value=4.1 Score=30.31 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=29.0
Q ss_pred HHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 033044 50 ETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 50 E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
+++..++|++++|...+...-..+|.+.|.+.|+.++
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii 161 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIIL 161 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEe
Confidence 4577899999999865444445689999999998876
No 155
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=83.81 E-value=2.4 Score=32.07 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=29.6
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEe
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVV 62 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP 62 (128)
..++..+++.||++||.-. |++.-|.+.|+|+|.+=
T Consensus 189 l~e~~~li~~~~l~I~~Ds-g~~HlA~a~~~p~i~l~ 224 (279)
T cd03789 189 LRELAALLARADLVVTNDS-GPMHLAAALGTPTVALF 224 (279)
T ss_pred HHHHHHHHHhCCEEEeeCC-HHHHHHHHcCCCEEEEE
Confidence 3568999999999999954 45666789999999883
No 156
>PLN02929 NADH kinase
Probab=83.78 E-value=2.7 Score=33.22 Aligned_cols=72 Identities=17% Similarity=0.309 Sum_probs=44.6
Q ss_pred HHHHhhccEEEecCchHHHHHHHH---hCCCEEEEeCCCCCCchHHHHHHHHHhCC-CEEE--eChHHHHHHHHhcch
Q 033044 30 ADHLSSASLVISHAGSGSIFETLR---LGKPLIVVVNEDLMDNHQSELAEELADRK-HLYC--AHPQSLHQVIVGMDL 101 (128)
Q Consensus 30 ~~~~~~adlvIthaG~~Ti~E~l~---~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g-~~~~--~~~~~l~~~i~~l~~ 101 (128)
......+|+||+-||=||+..++. .++|++.|-......++=...-..+...+ .|+. .+++++.+.|.++++
T Consensus 59 ~~~~~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 59 SQPIRDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLF 136 (301)
T ss_pred ccccCCCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHc
Confidence 455678999999999999998864 36899988542100000011112233222 4433 478888888888864
No 157
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.15 E-value=3.3 Score=32.00 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=25.2
Q ss_pred hhccEEEecCchHHHHHHHH------hCCCEEEEeC
Q 033044 34 SSASLVISHAGSGSIFETLR------LGKPLIVVVN 63 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~------~g~P~I~vP~ 63 (128)
..+|++|+-||=||+..++. .++|++-|-.
T Consensus 34 ~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 34 KNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 35899999999999999985 4778888765
No 158
>PRK10342 glycerate kinase I; Provisional
Probab=82.41 E-value=4.9 Score=32.81 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=41.6
Q ss_pred hHHHHHhhccEEEecCc------------hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--e--ChHH
Q 033044 28 SIADHLSSASLVISHAG------------SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC--A--HPQS 91 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG------------~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~--~~~~ 91 (128)
++++.++.||+|||-=| .+-.--+..+++|+|++--. +. ...+.+.+.|+.-+ + .+..
T Consensus 277 ~l~~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~--~~----~~~~~~~~~g~~av~~i~~~~~~ 350 (381)
T PRK10342 277 NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS--LT----DDVGVVHQHGIDAVFSVLTSIGT 350 (381)
T ss_pred CHHHHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecc--cC----CChHHHHhcCceEEEEcCCCCCC
Confidence 58899999999999877 23333455789999999532 11 12345667776533 2 2445
Q ss_pred HHHHHHhc
Q 033044 92 LHQVIVGM 99 (128)
Q Consensus 92 l~~~i~~l 99 (128)
|.+++++.
T Consensus 351 l~~a~~~~ 358 (381)
T PRK10342 351 LDEAFRGA 358 (381)
T ss_pred HHHHHHHH
Confidence 55555443
No 159
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=82.31 E-value=3.4 Score=25.74 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=35.6
Q ss_pred cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCC-CEEE-eChHHHHHHHHhcch
Q 033044 42 HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRK-HLYC-AHPQSLHQVIVGMDL 101 (128)
Q Consensus 42 haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g-~~~~-~~~~~l~~~i~~l~~ 101 (128)
.+-...+.|++++|+|+|.-+.+ ..... ...| .++. -+++++.+.|..++.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~~--------~~~~~-~~~~~~~~~~~~~~el~~~i~~ll~ 61 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDSP--------GLREI-FEDGEHIITYNDPEELAEKIEYLLE 61 (92)
T ss_pred CCCchHHHHHHHCCCeEEECChH--------HHHHH-cCCCCeEEEECCHHHHHHHHHHHHC
Confidence 44456899999999999987542 33344 3334 3333 489999999998864
No 160
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=81.91 E-value=3.5 Score=29.93 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=40.1
Q ss_pred hhcc-EEEecCchHHHH----------------HHHHhCCCEEEEeCCC-------CCC-chHH---------HHHHHHH
Q 033044 34 SSAS-LVISHAGSGSIF----------------ETLRLGKPLIVVVNED-------LMD-NHQS---------ELAEELA 79 (128)
Q Consensus 34 ~~ad-lvIthaG~~Ti~----------------E~l~~g~P~I~vP~~~-------~~~-~~Q~---------~nA~~l~ 79 (128)
.++| ++|.=|-++|+. +++..++|++++|... ... +.+. +|.+.|.
T Consensus 77 ~~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~L~ 156 (174)
T TIGR02699 77 GKYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEKLA 156 (174)
T ss_pred cccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHHHh
Confidence 3455 455666666554 3345699999999841 111 1232 6888888
Q ss_pred hC-CCEEEeChHHHHHHH
Q 033044 80 DR-KHLYCAHPQSLHQVI 96 (128)
Q Consensus 80 ~~-g~~~~~~~~~l~~~i 96 (128)
+. |..+..++++|.+.+
T Consensus 157 ~~~gv~v~~~~~~~~~~~ 174 (174)
T TIGR02699 157 QMEGIEILTKPEDIYKIF 174 (174)
T ss_pred hCCCeEEECCHHHHHhhC
Confidence 87 666767888887653
No 161
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=81.60 E-value=1.9 Score=37.12 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=30.3
Q ss_pred HHHHHhhccEEEecC-----chHHHHHHHHhCCCEEEEeCC
Q 033044 29 IADHLSSASLVISHA-----GSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 29 ~~~~~~~adlvItha-----G~~Ti~E~l~~g~P~I~vP~~ 64 (128)
..++++.||++|.=+ | -|+.||+++|+|+|.-...
T Consensus 468 y~E~~~g~dl~v~PS~yE~fG-~~~lEAma~G~PvI~t~~~ 507 (590)
T cd03793 468 YEEFVRGCHLGVFPSYYEPWG-YTPAECTVMGIPSITTNLS 507 (590)
T ss_pred hHHHhhhceEEEeccccCCCC-cHHHHHHHcCCCEEEccCc
Confidence 578999999999843 5 5999999999999998775
No 162
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=80.97 E-value=10 Score=27.77 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=37.5
Q ss_pred hcc-EEEecCchHHHHH----------------HHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 033044 35 SAS-LVISHAGSGSIFE----------------TLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 35 ~ad-lvIthaG~~Ti~E----------------~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
+|| ++|.=|-++|+.. +++.++|++++|...+...--.+|...|.+.|+.++
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi 146 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIM 146 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeccccCCHHHHHHHHHHHHCcCEEE
Confidence 566 5667777777653 456899999999765433333579999999998876
No 163
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=80.07 E-value=4.8 Score=31.45 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=26.2
Q ss_pred HHHhhccEEEecCchHHHHHHHHh----CCCEEEEeC
Q 033044 31 DHLSSASLVISHAGSGSIFETLRL----GKPLIVVVN 63 (128)
Q Consensus 31 ~~~~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~ 63 (128)
+.-..+|++|+-||=||+.+++.. ++|++-|-.
T Consensus 59 ~~~~~~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~ 95 (291)
T PRK02155 59 EIGARADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH 95 (291)
T ss_pred HhccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC
Confidence 333468999999999999999863 678887754
No 164
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=79.99 E-value=7.4 Score=33.55 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=54.6
Q ss_pred hHHHHHhhccEEEe---cCchHHHHHHHHhCCCEEEEeCCCCCCchHHH--HHHH-HHhCCCEEE--eChH-HH------
Q 033044 28 SIADHLSSASLVIS---HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSE--LAEE-LADRKHLYC--AHPQ-SL------ 92 (128)
Q Consensus 28 ~~~~~~~~adlvIt---haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~--nA~~-l~~~g~~~~--~~~~-~l------ 92 (128)
++-+.+.-||+|.= =+|++|..|++.+|+|+|..+ ++|.. |..- +...|+--. .+.+ -+
T Consensus 501 ~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~------G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~ 574 (620)
T COG3914 501 DHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV------GEQFASRNGASIATNAGIPELVADSRADYVEKAVAF 574 (620)
T ss_pred HHHHhhchhheeeecccCCCccchHHHHHhcCceeeec------cHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHh
Confidence 46788899999985 489999999999999999986 34542 3333 333466522 2322 22
Q ss_pred ------HHHHHhcchhcCCCCCCCChHHHHHHHHHhc
Q 033044 93 ------HQVIVGMDLKSLLPYQPGDATPVAKLINRFL 123 (128)
Q Consensus 93 ------~~~i~~l~~~~~~~~~~~~~~~i~~~i~~~~ 123 (128)
+..++.-++..+...+=-+++.+++.+.+..
T Consensus 575 g~dral~q~~r~~l~~~r~tspL~d~~~far~le~~y 611 (620)
T COG3914 575 GSDRALRQQVRAELKRSRQTSPLFDPKAFARKLETLY 611 (620)
T ss_pred cccHHHHHhhHHHHHhccccCcccCHHHHHHHHHHHH
Confidence 2223222222333223346778888776654
No 165
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=79.97 E-value=0.57 Score=37.53 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=29.0
Q ss_pred hHHHHHhhccEEEecCchHHHHHHHH----hCCCEEEEe
Q 033044 28 SIADHLSSASLVISHAGSGSIFETLR----LGKPLIVVV 62 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~E~l~----~g~P~I~vP 62 (128)
++.+.|.+||+||+-||-||..-|.. -.+|+|.|-
T Consensus 98 ~lsq~i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvN 136 (395)
T KOG4180|consen 98 DLSQPIRWADMVISVGGDGTFLLAASRVIDDSKPVIGVN 136 (395)
T ss_pred hccCcCchhhEEEEecCccceeehhhhhhccCCceeeec
Confidence 46667999999999999999876554 479999983
No 166
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.56 E-value=4.6 Score=31.56 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=26.2
Q ss_pred HHHhhccEEEecCchHHHHHHHH----hCCCEEEEeC
Q 033044 31 DHLSSASLVISHAGSGSIFETLR----LGKPLIVVVN 63 (128)
Q Consensus 31 ~~~~~adlvIthaG~~Ti~E~l~----~g~P~I~vP~ 63 (128)
++...+|++|+-||=||+..++. .++|++.|-.
T Consensus 60 ~~~~~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~ 96 (287)
T PRK14077 60 ELFKISDFLISLGGDGTLISLCRKAAEYDKFVLGIHA 96 (287)
T ss_pred hcccCCCEEEEECCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 34457999999999999997765 3779888854
No 167
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.11 E-value=4.3 Score=31.49 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=25.2
Q ss_pred hccEEEecCchHHHHHHHH---hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR---LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~---~g~P~I~vP~~ 64 (128)
.+|++|+-||=||+.+++. .++|++.|+..
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G 89 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGINMG 89 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCC
Confidence 6899999999999999884 35688888864
No 168
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.82 E-value=7 Score=30.67 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=38.9
Q ss_pred HHHHhhccEEEecCchHHHHHHHH----hCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChHHHHHHHHhcch
Q 033044 30 ADHLSSASLVISHAGSGSIFETLR----LGKPLIVVVNEDLMDNHQSELAEELADRKHLYC--AHPQSLHQVIVGMDL 101 (128)
Q Consensus 30 ~~~~~~adlvIthaG~~Ti~E~l~----~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~~~l~~~i~~l~~ 101 (128)
.++-..+|++|+=||=||+..++. .++|++-|-.. + .|+. .+++++.+.++++.+
T Consensus 63 ~~~~~~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G-----~------------lGFL~~~~~~~~~~~l~~i~~ 123 (296)
T PRK04539 63 TELGQYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG-----H------------LGFLTQIPREYMTDKLLPVLE 123 (296)
T ss_pred hhcCcCCCEEEEECCcHHHHHHHHHhcccCCCEEEEecC-----C------------CeEeeccCHHHHHHHHHHHHc
Confidence 344457999999999999999874 37898888542 1 3333 367777777777653
No 169
>PRK10736 hypothetical protein; Provisional
Probab=78.73 E-value=13 Score=30.22 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=51.3
Q ss_pred hhHHHHHhhccEEEe---cCch-HHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHHHH
Q 033044 27 SSIADHLSSASLVIS---HAGS-GSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIV 97 (128)
Q Consensus 27 ~~~~~~~~~adlvIt---haG~-~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~ 97 (128)
+.+-.-++.+-+||- ++|+ .|.-.++..|+++..+|-. +++.+..=...|-+.|+..+.+++++.+.+.
T Consensus 212 NRIIagLS~~viVvEA~~kSGsliTA~~Al~~gR~VfavPG~--i~~~~s~G~n~LI~~GA~lv~~~~Di~~~l~ 284 (374)
T PRK10736 212 NRIISGLSKGVLVVEAALRSGSLVTARCALEQGRDVFALPGP--IGNPGSEGPHWLIKQGAYLVTSPEDILENLQ 284 (374)
T ss_pred hhHHHHhCCeEEEEEeCCCCchHHHHHHHHHhCCeEEEEcCC--CCCccchhHHHHHHCCCEEeCCHHHHHHHhh
Confidence 345566777878887 7774 4666788999999999854 2344455566777889888889999888874
No 170
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.54 E-value=1.4 Score=36.32 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=40.8
Q ss_pred HHHhhccEEEec------CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC--CCE
Q 033044 31 DHLSSASLVISH------AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR--KHL 84 (128)
Q Consensus 31 ~~~~~adlvIth------aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~--g~~ 84 (128)
+-..-..++||+ || |+++-..+.+.|+|+|-..+|+++-+.+-.+.|..+ |.+
T Consensus 238 ~~vdvg~vIlTKlDGhakGG-gAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmG 298 (483)
T KOG0780|consen 238 ETVDVGAVILTKLDGHAKGG-GALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMG 298 (483)
T ss_pred HhhccceEEEEecccCCCCC-ceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccc
Confidence 333444577763 44 688888899999999999999998888888888775 665
No 171
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=78.12 E-value=12 Score=31.83 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=25.0
Q ss_pred hccEEEecCchHHHHHHHHhCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
.+|+|||+||..++... ...+|+|-|+..
T Consensus 54 ~~dviIsrG~ta~~i~~-~~~iPVv~i~~s 82 (526)
T TIGR02329 54 RCDVVVAGGSNGAYLKS-RLSLPVIVIKPT 82 (526)
T ss_pred CCcEEEECchHHHHHHH-hCCCCEEEecCC
Confidence 57999999998888776 568999999886
No 172
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=78.09 E-value=5.1 Score=29.51 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=29.1
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
+.++..+++.||++||-=. |.+-=|.+.|+|+|.+
T Consensus 174 l~e~~ali~~a~~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 174 LRELAALISRADLVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHHTSSEEEEESS-HHHHHHHHTT--EEEE
T ss_pred HHHHHHHHhcCCEEEecCC-hHHHHHHHHhCCEEEE
Confidence 4568899999999999988 5788899999999999
No 173
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=77.77 E-value=12 Score=31.96 Aligned_cols=29 Identities=21% Similarity=0.504 Sum_probs=25.4
Q ss_pred hccEEEecCchHHHHHHHHhCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
.+|+|||+||.+..... ...+|+|-|+..
T Consensus 64 ~~dviIsrG~ta~~i~~-~~~iPVv~i~~s 92 (538)
T PRK15424 64 RCDAIIAAGSNGAYLKS-RLSVPVILIKPS 92 (538)
T ss_pred CCcEEEECchHHHHHHh-hCCCCEEEecCC
Confidence 68999999999888876 578999999886
No 174
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.61 E-value=8.5 Score=30.13 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=38.1
Q ss_pred HHHhhccEEEecCchHHHHHHHHh----CCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChHHHHHHHHhcch
Q 033044 31 DHLSSASLVISHAGSGSIFETLRL----GKPLIVVVNEDLMDNHQSELAEELADRKHLYC--AHPQSLHQVIVGMDL 101 (128)
Q Consensus 31 ~~~~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~~~l~~~i~~l~~ 101 (128)
.+-..+|++|+=||=||+..++.. ++|++.|-.. + .|+. .+++++.+.++++++
T Consensus 60 ~~~~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G-----~------------lGFLt~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 60 ELDGSADMVISIGGDGTFLRTATYVGNSNIPILGINTG-----R------------LGFLATVSKEEIEETIDELLN 119 (292)
T ss_pred hcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEecC-----C------------CCcccccCHHHHHHHHHHHHc
Confidence 334579999999999999998863 6798888653 1 2322 356777777776654
No 175
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=75.05 E-value=6.6 Score=32.35 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=29.2
Q ss_pred ChhhHHHHHhhccEEEecCchH-----------HHHHHHHhCCCEEEEeCC
Q 033044 25 FSSSIADHLSSASLVISHAGSG-----------SIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~~-----------Ti~E~l~~g~P~I~vP~~ 64 (128)
...++.+.+.+||++|+-||.. -+.-+..+|+|+++++..
T Consensus 107 ~~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 107 GFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred hHHHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 3445678899999999977643 122346789999999765
No 176
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.90 E-value=7.3 Score=30.72 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=26.8
Q ss_pred HHHhhccEEEecCchHHHHHHHHh----CCCEEEEeC
Q 033044 31 DHLSSASLVISHAGSGSIFETLRL----GKPLIVVVN 63 (128)
Q Consensus 31 ~~~~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~ 63 (128)
.+-+.+|++|+=||=||+..++.. ++|++.|-.
T Consensus 64 ~~~~~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~ 100 (305)
T PRK02649 64 GFDSSMKFAIVLGGDGTVLSAARQLAPCGIPLLTINT 100 (305)
T ss_pred hcccCcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC
Confidence 334469999999999999999864 779888854
No 177
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=74.42 E-value=12 Score=28.53 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=36.1
Q ss_pred hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCC
Q 033044 28 SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKH 83 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~ 83 (128)
++-.++++||++||-==++++. ++.+|+|.|.+++. ......+...|+
T Consensus 243 e~~~~i~~~~~vI~~RlH~~I~-A~~~gvP~i~i~y~-------~K~~~~~~~~g~ 290 (298)
T TIGR03609 243 ELLGLFASARLVIGMRLHALIL-AAAAGVPFVALSYD-------PKVRAFAADAGV 290 (298)
T ss_pred HHHHHHhhCCEEEEechHHHHH-HHHcCCCEEEeecc-------HHHHHHHHHhCC
Confidence 5667899999999988876555 89999999999763 345555555554
No 178
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=74.14 E-value=20 Score=29.09 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=48.2
Q ss_pred hHHHHHhhccEEEe----cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChHHHHHHHHh
Q 033044 28 SIADHLSSASLVIS----HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQSLHQVIVG 98 (128)
Q Consensus 28 ~~~~~~~~adlvIt----haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~~l~~~i~~ 98 (128)
+.-+++++||+.|- .-|.||+.-++.+|+|+++--. -..-+.|.+.|..+.. +...++++=++
T Consensus 258 eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~--------np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rq 329 (360)
T PF07429_consen 258 EYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRD--------NPFWQDLKEQGIPVLFYGDELDEALVREAQRQ 329 (360)
T ss_pred HHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecC--------ChHHHHHHhCCCeEEeccccCCHHHHHHHHHH
Confidence 46789999999886 4699999999999999988643 2356678888987653 55566665555
Q ss_pred c
Q 033044 99 M 99 (128)
Q Consensus 99 l 99 (128)
+
T Consensus 330 l 330 (360)
T PF07429_consen 330 L 330 (360)
T ss_pred H
Confidence 5
No 179
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=74.00 E-value=7.3 Score=30.42 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=31.2
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
+.++..+++.||++||.=. |.+.=|.+.|+|+|.+
T Consensus 251 L~el~ali~~a~l~Vs~DS-Gp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 251 LPQLAALIDHARLFIGVDS-VPMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHHHHHHhCCEEEecCC-HHHHHHHHcCCCEEEE
Confidence 4578999999999999976 6888899999999988
No 180
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=73.28 E-value=6.2 Score=30.50 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=31.2
Q ss_pred eChhhHHHHH---hhccEEEecCchHH------HHHHHHhCCCEEEEeCC
Q 033044 24 TFSSSIADHL---SSASLVISHAGSGS------IFETLRLGKPLIVVVNE 64 (128)
Q Consensus 24 ~f~~~~~~~~---~~adlvIthaG~~T------i~E~l~~g~P~I~vP~~ 64 (128)
+|..+++..| .++|+|||+.-.++ +.-|...|+|+|+|-+|
T Consensus 182 Pfs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 182 PFSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred CcChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 6776655543 57899999865555 66688999999999666
No 181
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=73.20 E-value=6.5 Score=32.00 Aligned_cols=66 Identities=18% Similarity=0.329 Sum_probs=41.2
Q ss_pred hHHHHHhhccEEEecCc------------hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--e--ChHH
Q 033044 28 SIADHLSSASLVISHAG------------SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC--A--HPQS 91 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG------------~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~--~~~~ 91 (128)
++++.++.||+|||-=| .+-.--+..+++|+|++--. +. .....+.+.|+.-+ + .+..
T Consensus 276 ~l~~~l~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~--v~----~~~~~~~~~g~~a~~~i~~~~~~ 349 (375)
T TIGR00045 276 DLEQKIKDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGS--LG----DGVDVLPQHGIDAAFSILPSPMP 349 (375)
T ss_pred CHHHHhcCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEecc--cC----CChHHHHhcCccEEEEcCCCCCC
Confidence 58899999999999877 33333455689999998532 11 22344666676532 2 3445
Q ss_pred HHHHHHhc
Q 033044 92 LHQVIVGM 99 (128)
Q Consensus 92 l~~~i~~l 99 (128)
|.+++++.
T Consensus 350 l~~a~~~~ 357 (375)
T TIGR00045 350 LEDALQNA 357 (375)
T ss_pred HHHHHHHH
Confidence 55555443
No 182
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=72.32 E-value=14 Score=26.79 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=35.6
Q ss_pred HHhhcc-EEEecCchHHHHHH-------------HHh--CCCEEEEeCC---CCCCchHHHHHHHHHhCCCEEE
Q 033044 32 HLSSAS-LVISHAGSGSIFET-------------LRL--GKPLIVVVNE---DLMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 32 ~~~~ad-lvIthaG~~Ti~E~-------------l~~--g~P~I~vP~~---~~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
+-.++| ++|.=+-++|+... ++. ++|+|++|.. .+...--.+|.+.|.+.|..++
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi 147 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEI 147 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEE
Confidence 446677 45566666665543 334 8999999973 2222333568999999888765
No 183
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=71.71 E-value=8.9 Score=30.15 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=30.8
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
+.++..+|+.||++||.=. |.+.=|.+.|+|+|.+
T Consensus 253 L~el~ali~~a~l~v~nDS-Gp~HlAaA~g~P~v~l 287 (352)
T PRK10422 253 FPELGALIDHAQLFIGVDS-APAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHHHHHHhCCEEEecCC-HHHHHHHHcCCCEEEE
Confidence 4678999999999999987 5788899999999887
No 184
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.65 E-value=12 Score=28.60 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=25.3
Q ss_pred hhccEEEecCchHHHHHHHH-hCCCEEEEeC
Q 033044 34 SSASLVISHAGSGSIFETLR-LGKPLIVVVN 63 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~-~g~P~I~vP~ 63 (128)
..+|++|+=||=||+..++. +++|++-|-.
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~ 70 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFKA 70 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEeC
Confidence 47899999999999999885 5888887754
No 185
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=70.43 E-value=27 Score=27.90 Aligned_cols=72 Identities=21% Similarity=0.144 Sum_probs=46.3
Q ss_pred hhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChHHHHHHHHhcch
Q 033044 27 SSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-AHPQSLHQVIVGMDL 101 (128)
Q Consensus 27 ~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~~~~~l~~~i~~l~~ 101 (128)
..+...++++.+|||-==.|-+. +..+|+|-|++|+.++.. .-. --..++....+.. .+++.++.++..++.
T Consensus 260 ~~g~~~l~s~~lViTdRLHghIl-StL~giPhivi~NSygKn-~~~-y~~Wl~~ipf~~~i~~~~~v~~~~a~~~e 332 (339)
T COG5039 260 EAGIYFLQSAELVITDRLHGHIL-STLTGIPHIVIPNSYGKN-ENY-YQTWLEGIPFCKLIKDPEKVENAAAVLLE 332 (339)
T ss_pred HHHHHHHhhceeeeechhHHHHH-HHHhCCCeEEecCcchhh-HHH-HHHHHhcCCcceeecCchhhhhHHHHHHH
Confidence 45778899999999977766666 556899999999975421 111 1112333334433 377777777665543
No 186
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=70.14 E-value=17 Score=26.31 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=33.5
Q ss_pred Hhhcc-EEEecCchHHHHHHH-------------Hh--CCCEEEEeCCC---CCCchHHHHHHHHHhCCCEEE
Q 033044 33 LSSAS-LVISHAGSGSIFETL-------------RL--GKPLIVVVNED---LMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 33 ~~~ad-lvIthaG~~Ti~E~l-------------~~--g~P~I~vP~~~---~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
-.++| ++|.=|-++|+.... +. ++|++++|... +...-=.+|-+.|.+.|..++
T Consensus 74 ~~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi 146 (177)
T TIGR02113 74 AKKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEI 146 (177)
T ss_pred chhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEE
Confidence 34666 456666666654332 23 89999999531 212223468889999888765
No 187
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.10 E-value=14 Score=28.57 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=23.8
Q ss_pred hhccEEEecCchHHHHHHHHh-----CCCEEEEeC
Q 033044 34 SSASLVISHAGSGSIFETLRL-----GKPLIVVVN 63 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~~-----g~P~I~vP~ 63 (128)
..+|++|+=||=||+..++.. .+|++-|-.
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~ 72 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGIST 72 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEec
Confidence 458999999999999999864 456566654
No 188
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=69.92 E-value=10 Score=29.36 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=30.5
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
..++..+|+.||++||-=. |.+-=|.+.|+|+|.+
T Consensus 242 L~el~ali~~a~l~I~~DS-Gp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 242 LDEAVDLIALAKAVVTNDS-GLMHVAAALNRPLVAL 276 (334)
T ss_pred HHHHHHHHHhCCEEEeeCC-HHHHHHHHcCCCEEEE
Confidence 3578899999999999877 4777899999999988
No 189
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=69.58 E-value=11 Score=29.06 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=30.7
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEe
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVV 62 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP 62 (128)
+.++..++++||++||-=. |.+-=|.+.|+|+|.+=
T Consensus 245 L~el~ali~~a~l~I~~DS-gp~HlAaa~g~P~i~lf 280 (319)
T TIGR02193 245 LAEVAALLAGADAVVGVDT-GLTHLAAALDKPTVTLY 280 (319)
T ss_pred HHHHHHHHHcCCEEEeCCC-hHHHHHHHcCCCEEEEE
Confidence 4568899999999999887 57788999999999883
No 190
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.28 E-value=13 Score=29.10 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=37.4
Q ss_pred HHHHhhccEEEecCchHHHHHHHH----hCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHHHHhcch
Q 033044 30 ADHLSSASLVISHAGSGSIFETLR----LGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVGMDL 101 (128)
Q Consensus 30 ~~~~~~adlvIthaG~~Ti~E~l~----~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~~l~~ 101 (128)
.++-..+|++|+=||=||+..++. .++|++-|-.. + .|..--.+++++.++++++.+
T Consensus 58 ~~~~~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G-----~----------lGFl~~~~~~~~~~~l~~i~~ 118 (292)
T PRK03378 58 AEIGQQADLAIVVGGDGNMLGAARVLARYDIKVIGINRG-----N----------LGFLTDLDPDNALQQLSDVLE 118 (292)
T ss_pred hhcCCCCCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC-----C----------CCcccccCHHHHHHHHHHHHc
Confidence 344457999999999999999985 36787777543 1 122222356667777666643
No 191
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.17 E-value=13 Score=28.72 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=35.8
Q ss_pred hccEEEecCchHHHHHHHH-hCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHHHHhcch
Q 033044 35 SASLVISHAGSGSIFETLR-LGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVGMDL 101 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~~l~~ 101 (128)
.+|++|+=||=||+..++. +..|++.|-.. + .|.---.+++++.+.|+++.+
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-----~----------lGFL~~~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMG-----G----------LGFLTEIEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECC-----C----------CccCcccCHHHHHHHHHHHHc
Confidence 6899999999999999886 46688777442 1 122112366777777776654
No 192
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=69.02 E-value=11 Score=33.49 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=43.8
Q ss_pred hhHHHHHhhccEEEecC---chH-HHHHHHHhCCC---EEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChHHHHHHH
Q 033044 27 SSIADHLSSASLVISHA---GSG-SIFETLRLGKP---LIVVVNEDLMDNHQSELAEELADRKHLYCA---HPQSLHQVI 96 (128)
Q Consensus 27 ~~~~~~~~~adlvItha---G~~-Ti~E~l~~g~P---~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~~~~l~~~i 96 (128)
+++..+|+.||+++.-+ |.| ++.|++++|+| +++++..... .+ .+ .. .++.+ +++.++++|
T Consensus 367 ~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~-~~------~l-~~-~allVnP~D~~~lA~AI 437 (797)
T PLN03063 367 NYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA-GQ------SL-GA-GALLVNPWNITEVSSAI 437 (797)
T ss_pred HHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCc-hh------hh-cC-CeEEECCCCHHHHHHHH
Confidence 45889999999998654 544 67899999998 5555543211 11 12 22 34333 788899998
Q ss_pred Hhcch
Q 033044 97 VGMDL 101 (128)
Q Consensus 97 ~~l~~ 101 (128)
.+++.
T Consensus 438 ~~aL~ 442 (797)
T PLN03063 438 KEALN 442 (797)
T ss_pred HHHHh
Confidence 88754
No 193
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=68.47 E-value=6.3 Score=30.76 Aligned_cols=29 Identities=34% Similarity=0.609 Sum_probs=23.7
Q ss_pred hccEEEecCchHHHHHHHHh-------CCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRL-------GKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~-------g~P~I~vP~~ 64 (128)
++|+||+=|| ||++++..+ |+|.|.||..
T Consensus 78 ~~d~IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 78 EVDAVIAVGG-GSTLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred CcCEEEEeCC-chHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 5899999999 577776532 9999999986
No 194
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.18 E-value=20 Score=27.84 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=26.6
Q ss_pred HHHHhhccEEEecCchHHHHHHHH----hCCCEEEEeC
Q 033044 30 ADHLSSASLVISHAGSGSIFETLR----LGKPLIVVVN 63 (128)
Q Consensus 30 ~~~~~~adlvIthaG~~Ti~E~l~----~g~P~I~vP~ 63 (128)
.+....+|++|+=||=||+..++. .++|++-|-.
T Consensus 37 ~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 37 EEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred HHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC
Confidence 344457999999999999998765 3679888754
No 195
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=66.64 E-value=15 Score=31.08 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=36.4
Q ss_pred HhhccEEEecCchHHHHHHHHh----CCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChHHHHHHHHhcch
Q 033044 33 LSSASLVISHAGSGSIFETLRL----GKPLIVVVNEDLMDNHQSELAEELADRKHLYC--AHPQSLHQVIVGMDL 101 (128)
Q Consensus 33 ~~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~~~l~~~i~~l~~ 101 (128)
...+|+||+=||=||+.-++.. ++|++.|-.. + .|+. .+++++.+.|.++.+
T Consensus 260 ~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G-----~------------LGFLt~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 260 HTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMG-----S------------LGFMTPFHSEQYRDCLDAILK 317 (508)
T ss_pred ccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-----C------------cceecccCHHHHHHHHHHHHc
Confidence 3578999999999999998864 4677766432 1 3333 366777777777653
No 196
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=66.56 E-value=11 Score=29.76 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=24.3
Q ss_pred hhccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
..+|.||+=|| ||++++.. .++|.|.||..
T Consensus 76 ~~~d~IIaiGG-Gs~iD~aK~ia~~~~~p~i~IPTt 110 (337)
T cd08177 76 AGADGIVAIGG-GSTIDLAKAIALRTGLPIIAIPTT 110 (337)
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHHHhcCCEEEEcCC
Confidence 36899999999 57777653 38999999986
No 197
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.19 E-value=15 Score=28.69 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=36.3
Q ss_pred HhhccEEEecCchHHHHHHHHh----CCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHHHHhcch
Q 033044 33 LSSASLVISHAGSGSIFETLRL----GKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVGMDL 101 (128)
Q Consensus 33 ~~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~~l~~ 101 (128)
-..+|+||+=||=||+.+++.. ++|++.|... + .|.--..+++++.++|.++++
T Consensus 60 ~~~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----~----------lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 60 GEVCDLVIVVGGDGSLLGAARALARHNVPVLGINRG-----R----------LGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred ccCCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----c----------ccccccCCHHHHHHHHHHHHc
Confidence 3468999999999999999853 6688877652 1 121111356777777776643
No 198
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=66.05 E-value=7.4 Score=30.80 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=24.0
Q ss_pred hhccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
.++|+||+=|| ||++++.. +++|.|.||..
T Consensus 77 ~~~d~iiavGG-Gs~~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 77 QEADMIFAVGG-GKAIDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHHHcCCCEEEecCc
Confidence 36799999999 57777653 38999999985
No 199
>PLN02727 NAD kinase
Probab=65.50 E-value=14 Score=33.62 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=38.5
Q ss_pred HHHHHhhccEEEecCchHHHHHHHHh----CCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChHHHHHHHHhcch
Q 033044 29 IADHLSSASLVISHAGSGSIFETLRL----GKPLIVVVNEDLMDNHQSELAEELADRKHLYC--AHPQSLHQVIVGMDL 101 (128)
Q Consensus 29 ~~~~~~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~~~l~~~i~~l~~ 101 (128)
+.++-..+|+||+=||=||+..++.. ++|++.|-.. + +|+. .+++++.+.|.+++.
T Consensus 737 ~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-----r------------LGFLTdi~~ee~~~~L~~Il~ 798 (986)
T PLN02727 737 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-----S------------LGFLTSHYFEDFRQDLRQVIH 798 (986)
T ss_pred hhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-----C------------ccccccCCHHHHHHHHHHHHc
Confidence 34445579999999999999999764 6788887653 1 3332 356666666666653
No 200
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=65.10 E-value=8 Score=30.52 Aligned_cols=30 Identities=23% Similarity=0.583 Sum_probs=24.6
Q ss_pred hhccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
+++|+||+=|| |++.++.. .|+|.|.||..
T Consensus 79 ~~~d~IIaiGG-Gsv~D~aK~iA~~~gip~I~VPTT 113 (332)
T cd08549 79 KDTEFLLGIGS-GTIIDLVKFVSFKVGKPFISVPTA 113 (332)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEeCCC
Confidence 37899999999 57777663 38999999986
No 201
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=64.91 E-value=8.7 Score=29.42 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=25.0
Q ss_pred hhccEEEecCchHHHHHHHHh----CCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLRL----GKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~~ 64 (128)
..+|+||+-||=||+..++.. ++|++-|-..
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G 58 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRG 58 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC
Confidence 358999999999999988754 6788877553
No 202
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=64.85 E-value=26 Score=28.64 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=51.5
Q ss_pred cccEEEEeChh--hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCC
Q 033044 17 LLAVDCFTFSS--SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRK 82 (128)
Q Consensus 17 ~~~~~v~~f~~--~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g 82 (128)
...+++.+|++ ++++++-.||+-+-||-= |..-|...|||.|==.++..-+.|-...-.++.+..
T Consensus 243 ~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGED-SfVRAqwAgkPFvWhIYpQ~d~aHl~KL~AFL~~y~ 309 (374)
T PF10093_consen 243 NLTLHVLPFVPQDDYDRLLWACDFNFVRGED-SFVRAQWAGKPFVWHIYPQEDDAHLDKLDAFLDRYC 309 (374)
T ss_pred CeEEEECCCCCHHHHHHHHHhCccceEecch-HHHHHHHhCCCceEecCcCchhhHHHHHHHHHHHHh
Confidence 36789999996 499999999999999985 899999999999988777443455555555665543
No 203
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=64.65 E-value=62 Score=25.91 Aligned_cols=64 Identities=16% Similarity=0.279 Sum_probs=44.6
Q ss_pred EeChhhHHHHHhhccEEEec----CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChHHHH
Q 033044 23 FTFSSSIADHLSSASLVISH----AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA-----HPQSLH 93 (128)
Q Consensus 23 ~~f~~~~~~~~~~adlvIth----aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~-----~~~~l~ 93 (128)
.+|. +..+++++||+.|-. -|.||+.-++.+|+|+++-... ..=..|.+.|+-+.. +...++
T Consensus 215 l~f~-eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n--------~fwqdl~e~gv~Vlf~~d~L~~~~v~ 285 (322)
T PRK02797 215 LPFD-DYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDN--------PFWQDLTEQGLPVLFTGDDLDEDIVR 285 (322)
T ss_pred CCHH-HHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCC--------chHHHHHhCCCeEEecCCcccHHHHH
Confidence 3443 467999999988864 5899999999999999887432 122347778888743 444454
Q ss_pred HH
Q 033044 94 QV 95 (128)
Q Consensus 94 ~~ 95 (128)
++
T Consensus 286 e~ 287 (322)
T PRK02797 286 EA 287 (322)
T ss_pred HH
Confidence 54
No 204
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=63.73 E-value=16 Score=28.63 Aligned_cols=35 Identities=11% Similarity=0.314 Sum_probs=30.5
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
+.++..+++.||++||-=. |.+-=|.+.|+|+|.+
T Consensus 252 L~el~ali~~a~l~I~nDT-Gp~HlAaA~g~P~val 286 (348)
T PRK10916 252 LEQAVILIAACKAIVTNDS-GLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHHHhCCEEEecCC-hHHHHHHHhCCCEEEE
Confidence 4678889999999999877 5788899999999887
No 205
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=62.71 E-value=38 Score=21.75 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=47.4
Q ss_pred cEEEEeC-hhhHHHHHhhccEEEecCch-HHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHHH
Q 033044 19 AVDCFTF-SSSIADHLSSASLVISHAGS-GSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVI 96 (128)
Q Consensus 19 ~~~v~~f-~~~~~~~~~~adlvIthaG~-~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i 96 (128)
++.+... .+++.+.+..-+++|+.+.. -.+.-++..+.+.|++..... -.....+..++.|..+..++.+-.+..
T Consensus 23 ~v~v~a~~~~~~~~~~~~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~---~~~~v~~la~~~~i~vi~t~~dtf~ta 99 (105)
T PF07085_consen 23 KVVVGAMSLSDFLEYLKPGDLVITPGDREDIQLAAIEAGIACIILTGGLE---PSEEVLELAKELGIPVISTPYDTFETA 99 (105)
T ss_dssp EEEE-SS-HHHHHHCHHTTEEEEEETT-HHHHHHHCCTTECEEEEETT-------HHHHHHHHHHT-EEEE-SS-HHHHH
T ss_pred eEEEEECCHHHHHhhcCCCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCC---CCHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 4445555 45677788888999997774 455566688889999986532 234566666777888777666555554
Q ss_pred Hh
Q 033044 97 VG 98 (128)
Q Consensus 97 ~~ 98 (128)
..
T Consensus 100 ~~ 101 (105)
T PF07085_consen 100 RL 101 (105)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 206
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=62.68 E-value=24 Score=30.36 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=58.2
Q ss_pred hhHHHHHhhccEEEecCch---HHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHH----------------Hh-CC--CE
Q 033044 27 SSIADHLSSASLVISHAGS---GSIFETLRLGKPLIVVVNEDLMDNHQSELAEEL----------------AD-RK--HL 84 (128)
Q Consensus 27 ~~~~~~~~~adlvIthaG~---~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l----------------~~-~g--~~ 84 (128)
+++..+|++|.++|+-|.. -+=.||+++|.|.|-- ... ..|=..|.+++ +. -| ..
T Consensus 333 ~ef~~lL~~akvfiGlGfP~EgPaPlEAia~G~vFlNp-~~~--pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhV 409 (559)
T PF15024_consen 333 DEFQQLLRKAKVFIGLGFPYEGPAPLEAIANGCVFLNP-RFN--PPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHV 409 (559)
T ss_pred HHHHHHHHhhhEeeecCCCCCCCChHHHHHcCCccccc-cCC--CCCcccccccccCCCCcceeccCChHHHhhCCCCeE
Confidence 3588999999999998842 3789999999976533 211 01111122211 21 12 22
Q ss_pred EEe---ChHHHHHHHHhcchhcCCCCCCC--ChHHHHHHHHHhc
Q 033044 85 YCA---HPQSLHQVIVGMDLKSLLPYQPG--DATPVAKLINRFL 123 (128)
Q Consensus 85 ~~~---~~~~l~~~i~~l~~~~~~~~~~~--~~~~i~~~i~~~~ 123 (128)
+-+ +.++|+++|+++++...++|.+. ..+.+.+.|..++
T Consensus 410 ytVd~~n~~~v~~Avk~il~~~v~Py~P~efT~egmLeRv~~~i 453 (559)
T PF15024_consen 410 YTVDINNSTEVEAAVKAILATPVEPYLPYEFTCEGMLERVNALI 453 (559)
T ss_pred EEEcCCCHHHHHHHHHHHHhcCCCCcCCcccCHHHHHHHHHHHH
Confidence 222 78899999999998777777653 4555555555443
No 207
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=62.65 E-value=15 Score=28.83 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=30.3
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
..++..++..||+|||-=. |-+-=|.+.|+|+|.+
T Consensus 242 L~e~~~li~~a~l~I~~DS-g~~HlAaA~~~P~I~i 276 (334)
T COG0859 242 LEELAALIAGADLVIGNDS-GPMHLAAALGTPTIAL 276 (334)
T ss_pred HHHHHHHHhcCCEEEccCC-hHHHHHHHcCCCEEEE
Confidence 4678899999999999877 4677799999999998
No 208
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=62.25 E-value=20 Score=24.03 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=32.7
Q ss_pred hhHHHHHhhccEEEecCchH----HHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC
Q 033044 27 SSIADHLSSASLVISHAGSG----SIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR 81 (128)
Q Consensus 27 ~~~~~~~~~adlvIthaG~~----Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~ 81 (128)
+++++++..+|++|==.-.. .+..++.+|+|+|+--... +.+|....+.+.++
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~--~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF--SDEQIDELEELAKK 115 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS--HHHHHHHHHHHTTT
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCC--CHHHHHHHHHHhcc
Confidence 66899999999998544333 3344567899988875542 35666677666666
No 209
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=62.07 E-value=67 Score=24.32 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=52.2
Q ss_pred hhhHHHHHhhccEEEecCc----hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--C----h----HH
Q 033044 26 SSSIADHLSSASLVISHAG----SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA--H----P----QS 91 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG----~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~--~----~----~~ 91 (128)
.+++.+++..+|+||-=+- .--+..++..|+|+++-|... ..+|...-.... ++..++. + . .-
T Consensus 51 ~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~--s~~~~~~l~~aa-~~~~v~~s~n~s~g~~~~~~l 127 (257)
T PRK00048 51 TDDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGF--TEEQLAELEEAA-KKIPVVIAPNFSIGVNLLMKL 127 (257)
T ss_pred cCCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCC--CHHHHHHHHHHh-cCCCEEEECcchHHHHHHHHH
Confidence 3567888888999983222 334455788999999886532 234443333333 4554432 1 1 12
Q ss_pred HHHHHHhcc--h--------hcCCCCCCCChHHHHHHHHHhcC
Q 033044 92 LHQVIVGMD--L--------KSLLPYQPGDATPVAKLINRFLG 124 (128)
Q Consensus 92 l~~~i~~l~--~--------~~~~~~~~~~~~~i~~~i~~~~g 124 (128)
+..+...+. + ......|+..+..+++.|.+..+
T Consensus 128 ~~~aa~~l~~~d~ei~E~HH~~K~DaPSGTA~~l~~~i~~~~~ 170 (257)
T PRK00048 128 AEKAAKYLGDYDIEIIEAHHRHKVDAPSGTALKLAEAIAEARG 170 (257)
T ss_pred HHHHHHhcCCCCEEEEEccCCCCCCCCCHHHHHHHHHHHHhhc
Confidence 222222221 1 12333455667788888876553
No 210
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=61.71 E-value=10 Score=30.26 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=23.5
Q ss_pred hccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
++|+||+=|| ||++++.. .++|.|.||..
T Consensus 84 ~~d~IIavGG-Gsv~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 84 GCDVVIGIGG-GKTLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred CCCEEEEecC-hHHHHHHHHHHHHcCCCEEEeCCc
Confidence 5799999999 57777653 38999999986
No 211
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=61.45 E-value=12 Score=28.97 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=25.4
Q ss_pred hccEEEecCchHHHHHHHHhCCCEEEEeC
Q 033044 35 SASLVISHAGSGSIFETLRLGKPLIVVVN 63 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~g~P~I~vP~ 63 (128)
+-|+||+.++..+.+-+...|+|.|.+-.
T Consensus 93 ~pDlVi~d~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 93 NPDLIISDFEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred CCCEEEECCchHHHHHHHhcCCCEEEEec
Confidence 35999999999999999999999997743
No 212
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=61.16 E-value=37 Score=25.11 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=37.3
Q ss_pred EEEecCchHHHHHH----------------HHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 033044 38 LVISHAGSGSIFET----------------LRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 38 lvIthaG~~Ti~E~----------------l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
.+|.=|-..|++.. +.-++|.|++|+.....---.+|.-.+.+.|+.+.
T Consensus 84 MiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~ 148 (191)
T COG0163 84 MIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIM 148 (191)
T ss_pred EEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEec
Confidence 56666776666643 23589999999986555556889999999999886
No 213
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=60.69 E-value=11 Score=29.89 Aligned_cols=30 Identities=30% Similarity=0.620 Sum_probs=23.9
Q ss_pred hhccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
.++|+||+=|| |+++++.. .++|.|.||..
T Consensus 76 ~~~d~IIavGG-Gs~~D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 76 QEADVIIGVGG-GKTLDTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEeCCc
Confidence 36799999999 57777552 39999999986
No 214
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=60.67 E-value=9.4 Score=30.19 Aligned_cols=29 Identities=34% Similarity=0.665 Sum_probs=23.6
Q ss_pred hccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
++|+||+=|| ||++++.. .++|.|.||..
T Consensus 77 ~~D~IIavGG-GS~iD~aK~ia~~~~~P~iaIPTT 110 (351)
T cd08170 77 GADVVIGIGG-GKTLDTAKAVADYLGAPVVIVPTI 110 (351)
T ss_pred CCCEEEEecC-chhhHHHHHHHHHcCCCEEEeCCc
Confidence 6799999999 57777653 38999999986
No 215
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=60.08 E-value=61 Score=23.53 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=11.1
Q ss_pred HHHHHhhccEEEecCch
Q 033044 29 IADHLSSASLVISHAGS 45 (128)
Q Consensus 29 ~~~~~~~adlvIthaG~ 45 (128)
+.++...-+.||+-||.
T Consensus 65 l~~l~~~~~~ViaTGGG 81 (172)
T COG0703 65 LKELLEEDNAVIATGGG 81 (172)
T ss_pred HHHHhhcCCeEEECCCc
Confidence 44555555688888774
No 216
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.84 E-value=12 Score=29.31 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=25.7
Q ss_pred hhccEEEecCchHHHHHHHHh----CCCEEEEeC
Q 033044 34 SSASLVISHAGSGSIFETLRL----GKPLIVVVN 63 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~ 63 (128)
..+|++|+-||=||+.+++.. ++|++.|..
T Consensus 56 ~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 358999999999999999863 789888875
No 217
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=59.64 E-value=11 Score=29.94 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=23.8
Q ss_pred hccEEEecCchHHHHHHHHh----------------------CCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRL----------------------GKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~----------------------g~P~I~vP~~ 64 (128)
.+|+||+=|| ||++++... ++|.|.||..
T Consensus 83 ~~D~IIavGG-GSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 83 NADFVIGIGG-GSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 5699999999 688877742 6899999986
No 218
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.72 E-value=19 Score=30.12 Aligned_cols=55 Identities=15% Similarity=0.292 Sum_probs=42.7
Q ss_pred HHHHHhhccEEEe------cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC--CCE
Q 033044 29 IADHLSSASLVIS------HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR--KHL 84 (128)
Q Consensus 29 ~~~~~~~adlvIt------haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~--g~~ 84 (128)
+++.+.-.-+||| +|| +.++=....|+|+-++-..+.+++=+.+..+++..+ |+|
T Consensus 235 F~e~l~itGvIlTKlDGdaRGG-aALS~~~~tg~PIkFiGtGEki~dLE~F~P~R~asRILGMG 297 (451)
T COG0541 235 FNEALGITGVILTKLDGDARGG-AALSARAITGKPIKFIGTGEKIDDLEPFHPDRFASRILGMG 297 (451)
T ss_pred HhhhcCCceEEEEcccCCCcch-HHHhhHHHHCCCeEEEecCCCcccCCCcChHHHHHHhcCcc
Confidence 4555556668887 466 478888899999999999888887777788888875 766
No 219
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=58.27 E-value=18 Score=28.58 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=23.8
Q ss_pred hccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
++|+||+=|| |+++++.. .++|.|.||..
T Consensus 80 ~~d~IIaIGG-Gs~~D~aK~vA~~~~~p~i~IPTT 113 (348)
T cd08175 80 DTDLIIAVGS-GTINDITKYVSYKTGIPYISVPTA 113 (348)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHhcCCCEEEecCc
Confidence 6999999999 57777653 47999999986
No 220
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=57.82 E-value=18 Score=28.50 Aligned_cols=29 Identities=34% Similarity=0.645 Sum_probs=23.4
Q ss_pred hccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
++|+||+=|| |++++... .|+|.|.||..
T Consensus 78 ~~d~iIaiGG-Gs~~D~aK~~a~~~~~p~i~iPTT 111 (339)
T cd08173 78 GADFVIGVGG-GRVIDVAKVAAYKLGIPFISVPTA 111 (339)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHhcCCCEEEecCc
Confidence 6899999999 57766542 48999999986
No 221
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=57.67 E-value=19 Score=28.65 Aligned_cols=29 Identities=34% Similarity=0.658 Sum_probs=23.1
Q ss_pred hccEEEecCchHHHHHHH-----HhCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETL-----RLGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l-----~~g~P~I~vP~~ 64 (128)
.+|+||+=|| |++.+.. ..|+|.|.||..
T Consensus 87 ~~d~IIaiGG-Gsv~D~ak~vA~~rgip~I~IPTT 120 (350)
T PRK00843 87 NAGFLIGVGG-GKVIDVAKLAAYRLGIPFISVPTA 120 (350)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHhcCCCEEEeCCC
Confidence 5799999999 5676654 349999999986
No 222
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=57.53 E-value=15 Score=29.15 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=24.4
Q ss_pred hccEEEecCchHH---HHHHHHhCCCEEEEeC
Q 033044 35 SASLVISHAGSGS---IFETLRLGKPLIVVVN 63 (128)
Q Consensus 35 ~adlvIthaG~~T---i~E~l~~g~P~I~vP~ 63 (128)
+-|+||+++|+-+ +.-+..+|+|.++.-.
T Consensus 91 kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~ 122 (352)
T PRK12446 91 KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES 122 (352)
T ss_pred CCCEEEecCchhhHHHHHHHHHcCCCEEEECC
Confidence 3679999999986 8888899999988733
No 223
>PRK10586 putative oxidoreductase; Provisional
Probab=57.02 E-value=15 Score=29.51 Aligned_cols=29 Identities=28% Similarity=0.626 Sum_probs=22.8
Q ss_pred hccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
.+|+||+=|| |++.++.. .++|.|.||..
T Consensus 86 ~~d~iiavGG-Gs~iD~aK~~a~~~~~p~i~vPT~ 119 (362)
T PRK10586 86 DRQVVIGVGG-GALLDTAKALARRLGLPFVAIPTI 119 (362)
T ss_pred CCCEEEEecC-cHHHHHHHHHHhhcCCCEEEEeCC
Confidence 4799999999 56666553 37999999985
No 224
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=56.69 E-value=25 Score=27.99 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=19.2
Q ss_pred EeChhhHHHHHhhccEEEecCchH
Q 033044 23 FTFSSSIADHLSSASLVISHAGSG 46 (128)
Q Consensus 23 ~~f~~~~~~~~~~adlvIthaG~~ 46 (128)
..|.+ +++++++||+++-|+..+
T Consensus 189 ~~y~~-l~ell~~sDii~l~~Plt 211 (324)
T COG1052 189 ARYVD-LDELLAESDIISLHCPLT 211 (324)
T ss_pred ceecc-HHHHHHhCCEEEEeCCCC
Confidence 45666 899999999999999864
No 225
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=56.20 E-value=84 Score=23.69 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=37.1
Q ss_pred HhhccEEEe---cCchH-HHHHHHH-hCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 033044 33 LSSASLVIS---HAGSG-SIFETLR-LGKPLIVVVNEDLMDNHQSELAEELADRKHLY 85 (128)
Q Consensus 33 ~~~adlvIt---haG~~-Ti~E~l~-~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~ 85 (128)
+..||++|+ |+=.+ .+.+.+. .|.+.|++|......+-.....+.+++.|.-+
T Consensus 49 i~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~ 106 (217)
T PF02593_consen 49 IPEADLLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEV 106 (217)
T ss_pred CCCCCEEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCcee
Confidence 678999999 77754 2344444 89999999986332233457888888888554
No 226
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=55.60 E-value=19 Score=27.62 Aligned_cols=34 Identities=35% Similarity=0.601 Sum_probs=22.1
Q ss_pred hccEEEecCchHHHHHHHH-----hCCCEEEEeCCCCCCc
Q 033044 35 SASLVISHAGSGSIFETLR-----LGKPLIVVVNEDLMDN 69 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~~~~~~ 69 (128)
.+|++|+=|| ||+.+... .|+|.|.||....+|+
T Consensus 75 ~~d~ii~vGg-G~i~D~~K~~A~~~~~p~isVPTa~S~DG 113 (250)
T PF13685_consen 75 DADLIIGVGG-GTIIDIAKYAAFELGIPFISVPTAASHDG 113 (250)
T ss_dssp T--EEEEEES-HHHHHHHHHHHHHHT--EEEEES--SSGG
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHhcCCCEEEecccccccc
Confidence 6679999888 78887764 6999999999755443
No 227
>PRK11914 diacylglycerol kinase; Reviewed
Probab=55.12 E-value=31 Score=26.60 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=24.6
Q ss_pred ccEEEecCchHHHHHHHH----hCCCEEEEeCC
Q 033044 36 ASLVISHAGSGSIFETLR----LGKPLIVVVNE 64 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l~----~g~P~I~vP~~ 64 (128)
+|+||.-||=||+.|++. .+.|+-++|..
T Consensus 65 ~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 65 TDALVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred CCEEEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 589999999999999883 46788888976
No 228
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=54.27 E-value=56 Score=24.47 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=36.1
Q ss_pred HHHHhhccE-EEecCchHHHHHHH---------------HhCCCEEEEeCCC---CCCchHHHHHHHHHhCCCEEE
Q 033044 30 ADHLSSASL-VISHAGSGSIFETL---------------RLGKPLIVVVNED---LMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 30 ~~~~~~adl-vIthaG~~Ti~E~l---------------~~g~P~I~vP~~~---~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
-++-++||+ +|.=+-++|+.... ..++|++++|... +...-=.+|-+.|.+.|..++
T Consensus 91 I~La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi 166 (209)
T PLN02496 91 IELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLI 166 (209)
T ss_pred hHhhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEE
Confidence 477778995 45666666665432 2489999999742 101112346778888887765
No 229
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=54.24 E-value=17 Score=29.33 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=23.1
Q ss_pred hccEEEecCchHHHHHHHHh-----------------------CCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRL-----------------------GKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~-----------------------g~P~I~vP~~ 64 (128)
++|+||+=|| ||++++..+ ++|.|.||..
T Consensus 79 ~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 79 GPDVIIGLGG-GSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 6899999999 577765521 7899999986
No 230
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=54.19 E-value=18 Score=29.09 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=22.8
Q ss_pred hccEEEecCchHHHHHHHH---h--------------------CCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR---L--------------------GKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~---~--------------------g~P~I~vP~~ 64 (128)
.+|+||+=|| ||++++.. . ++|.|.||..
T Consensus 86 ~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 86 KVDFILAVGG-GSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred CCCEEEEeCC-hHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 4899999999 57777652 2 6899999985
No 231
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=54.16 E-value=22 Score=29.01 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=42.3
Q ss_pred hhHHHHHhhccEEEecCch-----------HHHHHHHH-hCCCEEEEeCCCCCCchHHHHHHHHHhCCCE----EEeChH
Q 033044 27 SSIADHLSSASLVISHAGS-----------GSIFETLR-LGKPLIVVVNEDLMDNHQSELAEELADRKHL----YCAHPQ 90 (128)
Q Consensus 27 ~~~~~~~~~adlvIthaG~-----------~Ti~E~l~-~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~----~~~~~~ 90 (128)
-++++.++.||||||-=|. ..+.+.+. ++||+|.+--.- .+.-..+.+.|+- +...+.
T Consensus 276 ~~le~~v~daDLVITGEGr~D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs~------~~~~~~v~~~GI~AvFsi~~~~~ 349 (378)
T COG1929 276 TNLEDAVKDADLVITGEGRIDSQSLHGKTPIGVAKLAKKYGVPVIAIAGSL------GEDYEVVHQEGIDAVFSILERIG 349 (378)
T ss_pred hCHHHhhccCCEEEeCCCcccccccCCccchHHHHhhhhhCCCEEEEeccc------ccCcchhhhcCchhhhhcccCCC
Confidence 4689999999999997663 35666665 999999995421 1122334445543 222455
Q ss_pred HHHHHHHhcc
Q 033044 91 SLHQVIVGMD 100 (128)
Q Consensus 91 ~l~~~i~~l~ 100 (128)
.|.++++.-.
T Consensus 350 ~Le~alk~~~ 359 (378)
T COG1929 350 SLEEALKNAA 359 (378)
T ss_pred CHHHHHHhHH
Confidence 5666655443
No 232
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=54.07 E-value=13 Score=26.53 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=23.9
Q ss_pred eChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 24 TFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
.+++++.+..++||+||+..|.--+...-....=.++|
T Consensus 68 ~~T~~l~~~~~~ADIVVsa~G~~~~i~~~~ik~gavVI 105 (160)
T PF02882_consen 68 SKTKNLQEITRRADIVVSAVGKPNLIKADWIKPGAVVI 105 (160)
T ss_dssp TTSSSHHHHHTTSSEEEE-SSSTT-B-GGGS-TTEEEE
T ss_pred CCCCcccceeeeccEEeeeeccccccccccccCCcEEE
Confidence 34568999999999999999875554444443334444
No 233
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=53.51 E-value=16 Score=28.59 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=23.9
Q ss_pred hccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
++|+||+=|| |++.++.. .|+|.|.||..
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~~~~p~i~vPTt 108 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFLRGIPLSVPTTN 108 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhhcCCCEEEecCc
Confidence 4799999888 67877663 49999999986
No 234
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.26 E-value=31 Score=29.52 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=36.6
Q ss_pred hhccEEEecCchHHHHHHHHh----CCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHHHHhcch
Q 033044 34 SSASLVISHAGSGSIFETLRL----GKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIVGMDL 101 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~~l~~ 101 (128)
..+|+||+-||=||+..++.. ++|++.|-.. + .|.---.+++++.+.|+++++
T Consensus 347 ~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G-----~----------lGFL~~~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 347 EEISHIISIGGDGTVLRASKLVNGEEIPIICINMG-----T----------VGFLTEFSKEEIFKAIDSIIS 403 (569)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC-----C----------CCcCcccCHHHHHHHHHHHHc
Confidence 368999999999999999863 7788888553 1 111111366777777776653
No 235
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=52.83 E-value=92 Score=23.58 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=46.6
Q ss_pred HHHHHH-HhCCCEEEE--eCCCCCCchHHHHHHHHHhCCCEEE---------------eChHHHHHHHHhcchhc----C
Q 033044 47 SIFETL-RLGKPLIVV--VNEDLMDNHQSELAEELADRKHLYC---------------AHPQSLHQVIVGMDLKS----L 104 (128)
Q Consensus 47 Ti~E~l-~~g~P~I~v--P~~~~~~~~Q~~nA~~l~~~g~~~~---------------~~~~~l~~~i~~l~~~~----~ 104 (128)
.+.+++ ++|..=|.+ |+. +.-+....+++++.|+-+. ++++.+.+.+.++.... .
T Consensus 110 A~~~AL~alg~~RIalvTPY~---~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAif 186 (239)
T TIGR02990 110 AAVDGLAALGVRRISLLTPYT---PETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALF 186 (239)
T ss_pred HHHHHHHHcCCCEEEEECCCc---HHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEE
Confidence 455555 556665555 665 4567788999999997753 26888888888773211 1
Q ss_pred CCCCCCChHHHHHHHHHhcCC
Q 033044 105 LPYQPGDATPVAKLINRFLGF 125 (128)
Q Consensus 105 ~~~~~~~~~~i~~~i~~~~g~ 125 (128)
-.+-.-.+-.+++.|.+.+|.
T Consensus 187 isCTnLrt~~vi~~lE~~lGk 207 (239)
T TIGR02990 187 LSCTALRAATCAQRIEQAIGK 207 (239)
T ss_pred EeCCCchhHHHHHHHHHHHCC
Confidence 111112344566666666664
No 236
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=52.45 E-value=18 Score=29.04 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=22.8
Q ss_pred hccEEEecCchHHHHHHHH-----------------------hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR-----------------------LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----------------------~g~P~I~vP~~ 64 (128)
.+|+||+=|| ||++++.. .++|.|.||..
T Consensus 85 ~~D~IIavGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 85 GCDFIISIGG-GSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 5799999999 57766542 36899999986
No 237
>PRK13054 lipid kinase; Reviewed
Probab=52.38 E-value=36 Score=26.20 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=24.4
Q ss_pred hccEEEecCchHHHHHHHHh------C--CCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRL------G--KPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~------g--~P~I~vP~~ 64 (128)
..|+||.-||=||+.|++.. + .|+-++|..
T Consensus 56 ~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 56 GVATVIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred CCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 45899999999999999854 3 477888976
No 238
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=51.78 E-value=54 Score=26.77 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=52.1
Q ss_pred ccEEEEeChh--hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCC
Q 033044 18 LAVDCFTFSS--SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKH 83 (128)
Q Consensus 18 ~~~~v~~f~~--~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~ 83 (128)
..+++.+|++ ++++++-.||+=+-||-= |..-|...|+|.|==.++..-+.|-...-.+|.....
T Consensus 242 L~~~~LPf~~Q~~yD~LLW~cD~NfVRGED-SFVRAqWAgkPfvWhIYPQeddaHl~KL~AFL~~y~~ 308 (371)
T TIGR03837 242 LTVAVLPFVPQDDYDRLLWACDLNFVRGED-SFVRAQWAGKPFVWHIYPQEEDAHLAKLEAFLDLYCA 308 (371)
T ss_pred eEEEEcCCCChhhHHHHHHhChhcEeechh-HHHHHHHcCCCceeecccCchhhHHHHHHHHHHHHhc
Confidence 6789999996 499999999999999985 8999999999999887774445566666666665443
No 239
>PF02445 NadA: Quinolinate synthetase A protein; InterPro: IPR003473 Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid []. This synthesis requires two enzymes, an FAD-containing "B protein" and an "A protein".; GO: 0008987 quinolinate synthetase A activity, 0009435 NAD biosynthetic process; PDB: 2QS0_A 1WZU_A.
Probab=51.76 E-value=28 Score=27.51 Aligned_cols=47 Identities=13% Similarity=0.212 Sum_probs=36.4
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeC
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVN 63 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~ 63 (128)
.++..+..|++.-.++=+.+|+++|-+-+-.+.+.+--+++++++|-
T Consensus 98 ~p~~~vV~YVNssAevKA~sdi~cTSsNA~kIv~~l~~~~~IlF~PD 144 (296)
T PF02445_consen 98 YPDAAVVTYVNSSAEVKAESDICCTSSNAVKIVRSLPQDKKILFLPD 144 (296)
T ss_dssp STTS-EEEESSS-HHHHTT-SEEE-TTTHHHHHHCSS-SE-EEEES-
T ss_pred CCCCeEEEEecChHHHHccCCeEEECccHHHHHHHhcCCCeEEEcCc
Confidence 36678889998878888999999999999999999999999999995
No 240
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=51.43 E-value=50 Score=27.03 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=46.7
Q ss_pred HHHhhcc-EEEecCchHHHHHH-------------HHhCCCEEEEeCC---CCCCchHHHHHHHHHhCCCEEEe------
Q 033044 31 DHLSSAS-LVISHAGSGSIFET-------------LRLGKPLIVVVNE---DLMDNHQSELAEELADRKHLYCA------ 87 (128)
Q Consensus 31 ~~~~~ad-lvIthaG~~Ti~E~-------------l~~g~P~I~vP~~---~~~~~~Q~~nA~~l~~~g~~~~~------ 87 (128)
++..+|| +||.=|-++|+... ++.++|++++|-. .+...--.+|...|.+.|+.++-
T Consensus 78 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~ii~P~~g~l 157 (399)
T PRK05579 78 ELAKWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEIIGPASGRL 157 (399)
T ss_pred hcccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEEECCCCccc
Confidence 5556788 45666777777654 3458999999943 22223335688999999987651
Q ss_pred -----------ChHHHHHHHHhcc
Q 033044 88 -----------HPQSLHQVIVGMD 100 (128)
Q Consensus 88 -----------~~~~l~~~i~~l~ 100 (128)
+++++.+.+.+.+
T Consensus 158 a~~~~g~gr~~~~~~I~~~~~~~~ 181 (399)
T PRK05579 158 ACGDVGPGRMAEPEEIVAAAERAL 181 (399)
T ss_pred cCCCcCCCCCCCHHHHHHHHHHHh
Confidence 5777777776554
No 241
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=51.38 E-value=75 Score=21.58 Aligned_cols=64 Identities=16% Similarity=0.255 Sum_probs=39.1
Q ss_pred EEEecCchH------HHHHHHHhCCCEEEEeCC----CCC-----CchHHHHHHHHHhCCCEEE-eChHHHHHHHHhcch
Q 033044 38 LVISHAGSG------SIFETLRLGKPLIVVVNE----DLM-----DNHQSELAEELADRKHLYC-AHPQSLHQVIVGMDL 101 (128)
Q Consensus 38 lvIthaG~~------Ti~E~l~~g~P~I~vP~~----~~~-----~~~Q~~nA~~l~~~g~~~~-~~~~~l~~~i~~l~~ 101 (128)
++++++|.| .+.++...+.|+|++.-. ... ..+|....+.+.+ .... .+++++.+.+.+...
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~--~~~~i~~~~~~~~~i~~A~~ 139 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFRPITK--WAYRVTSPEEIPEALRRAFR 139 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCccccccCCcccccCHHHHHHHHhc--eEEEcCCHHHHHHHHHHHHH
Confidence 778886544 567788889999999532 100 1345555555442 2322 367788888777765
Q ss_pred hc
Q 033044 102 KS 103 (128)
Q Consensus 102 ~~ 103 (128)
..
T Consensus 140 ~a 141 (155)
T cd07035 140 IA 141 (155)
T ss_pred Hh
Confidence 43
No 242
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=51.07 E-value=1.4e+02 Score=26.13 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=40.3
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHHHHh------CCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHH
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFETLRL------GKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQ 94 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~l~~------g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~ 94 (128)
.+++.+.+..-++||+.+--.-+..++.. +...|++.-....+..=.+.+..+.+.|+.++.++.+-.+
T Consensus 236 ~~~~~~~l~~~~lVIt~gdR~Di~l~al~~~~~~~~~a~lIlTgg~~~~~~v~~l~~~a~~~~ipVl~t~~dT~~ 310 (684)
T PRK05632 236 IPNMLEHLKPGSLVVTPGDRSDVILAALLAAMNGPPIAGLLLTGGYEPDPRIAKLCEGAFETGLPVLSVDTNTYQ 310 (684)
T ss_pred hHHHHHhccCCcEEEeCCChHHHHHHHHHhcccCCCceEEEEcCCCCCCHHHHHHHhhcccCCCCEEEecCCHHH
Confidence 45678888899999997766665555544 4677777654332222122344445567776654433333
No 243
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=50.78 E-value=75 Score=26.10 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=42.5
Q ss_pred hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCE---EEe---ChHHHHHHHHhcc
Q 033044 28 SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHL---YCA---HPQSLHQVIVGMD 100 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~---~~~---~~~~l~~~i~~l~ 100 (128)
.+-..+++||++|+-==++ +.=++++|+|.|.+-+. ......+++.|+- +.. +.+.+.....+..
T Consensus 278 ~~~~~l~~~dl~Vg~R~Hs-aI~al~~g~p~i~i~Y~-------~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~ 348 (385)
T COG2327 278 ELGGILAACDLIVGMRLHS-AIMALAFGVPAIAIAYD-------PKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERL 348 (385)
T ss_pred HHHHHhccCceEEeehhHH-HHHHHhcCCCeEEEeec-------HHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHH
Confidence 4556889999988765554 45599999999999773 3344555565554 322 5556655554443
No 244
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=50.45 E-value=17 Score=24.29 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=24.2
Q ss_pred hhccEEEecCchHHHHHHHHh----C-----CCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLRL----G-----KPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~~----g-----~P~I~vP~~ 64 (128)
...|.||.-||=||+.|++.. . .|+.++|..
T Consensus 48 ~~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 48 PKFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred CcCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 345799999999999999842 3 577788875
No 245
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=50.41 E-value=18 Score=29.09 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=23.1
Q ss_pred hccEEEecCchHHHHHHHH-------------------------hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR-------------------------LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-------------------------~g~P~I~vP~~ 64 (128)
++|+||+=|| |+++++.. .++|.|.||..
T Consensus 86 ~~D~IiaiGG-GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 86 GADYLIAIGG-GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred CCCEEEEeCC-hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 5799999999 57777762 24799999986
No 246
>PRK13059 putative lipid kinase; Reviewed
Probab=50.30 E-value=16 Score=28.19 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=24.4
Q ss_pred hccEEEecCchHHHHHHH---H---hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETL---R---LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l---~---~g~P~I~vP~~ 64 (128)
.+|+||.-||=||+.|++ . .+.|+-++|..
T Consensus 56 ~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 56 SYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred CCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 358999999999999986 1 24788889976
No 247
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=50.27 E-value=22 Score=25.15 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=21.6
Q ss_pred cEEEecCchHHHHH--------HHHhCCCEEEEeC
Q 033044 37 SLVISHAGSGSIFE--------TLRLGKPLIVVVN 63 (128)
Q Consensus 37 dlvIthaG~~Ti~E--------~l~~g~P~I~vP~ 63 (128)
.+|+|+++.+...+ +..+|+|++++|-
T Consensus 30 ~lV~tka~g~AAQsGIp~~~kla~k~G~~vlvf~d 64 (147)
T COG4080 30 RLVLTKAKGSAAQSGIPEVLKLAFKLGKPVLVFPD 64 (147)
T ss_pred EEEEEecccHhhhhccHHHHHHHHHhCCcEEEehh
Confidence 48999998766665 5678999999975
No 248
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.17 E-value=29 Score=26.80 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=25.2
Q ss_pred hhccEEEecCchHHHHHHHH----hCCCEEEEeC
Q 033044 34 SSASLVISHAGSGSIFETLR----LGKPLIVVVN 63 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~----~g~P~I~vP~ 63 (128)
..+|++|+=||=||+.-++. .++|++.|-.
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec
Confidence 66899999999999998874 4678888865
No 249
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=50.03 E-value=19 Score=28.23 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=22.7
Q ss_pred hccEEEecCchHHHHHHHHh------------CCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRL------------GKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~------------g~P~I~vP~~ 64 (128)
.+|+||+=|| |+++++... ++|.|.||..
T Consensus 78 ~~d~IiaiGG-Gs~~D~aKa~a~~~~~~~~~~~~p~i~VPTt 118 (332)
T cd08180 78 KPDIVIALGG-GSAIDAAKAIIYFAKKLGKKKKPLFIAIPTT 118 (332)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHhCCCCCCCCCEEEeCCC
Confidence 4899999988 577776641 3799999986
No 250
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=49.93 E-value=32 Score=27.33 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=22.2
Q ss_pred hccEEEecCchHHHHHHH-------HhCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETL-------RLGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l-------~~g~P~I~vP~~ 64 (128)
++|+||+=|| |++.++. ..|+|.|.||..
T Consensus 83 r~d~IIaiGG-Gsv~D~ak~vA~~~~rgip~i~VPTT 118 (344)
T cd08169 83 RRTAIVAVGG-GATGDVAGFVASTLFRGIAFIRVPTT 118 (344)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHHhccCCcEEEecCC
Confidence 3899999998 4666544 239999999985
No 251
>PRK13057 putative lipid kinase; Reviewed
Probab=49.31 E-value=27 Score=26.71 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.3
Q ss_pred hhccEEEecCchHHHHHHHH----hCCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLR----LGKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~----~g~P~I~vP~~ 64 (128)
...|+||.-||=||+.|++. .+.|+-++|..
T Consensus 49 ~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~G 83 (287)
T PRK13057 49 DGVDLVIVGGGDGTLNAAAPALVETGLPLGILPLG 83 (287)
T ss_pred cCCCEEEEECchHHHHHHHHHHhcCCCcEEEECCC
Confidence 34689999999999999872 46788888975
No 252
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=48.95 E-value=91 Score=21.88 Aligned_cols=81 Identities=12% Similarity=0.214 Sum_probs=47.2
Q ss_pred EEEEeChhh-----HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEeCCC-----CCCc----hHHHHH
Q 033044 20 VDCFTFSSS-----IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVVNED-----LMDN----HQSELA 75 (128)
Q Consensus 20 ~~v~~f~~~-----~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP~~~-----~~~~----~Q~~nA 75 (128)
++++....+ |.+-+.++. ++++++|.| .+.+|..-+.|+|+|.-.. ..+. +|....
T Consensus 39 i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~~d~~~~~ 118 (164)
T cd07039 39 IEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQEVDLLALF 118 (164)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccccCCCCCcccCHHHHH
Confidence 455555444 555555554 778887765 5678888999999995321 1112 333333
Q ss_pred HHHHhCCCEE-EeChHHHHHHHHhcchh
Q 033044 76 EELADRKHLY-CAHPQSLHQVIVGMDLK 102 (128)
Q Consensus 76 ~~l~~~g~~~-~~~~~~l~~~i~~l~~~ 102 (128)
+-+.+ +.. +.+++++.+.+.+....
T Consensus 119 ~~~tk--~~~~v~~~~~~~~~i~~A~~~ 144 (164)
T cd07039 119 KDVAV--YNETVTSPEQLPELLDRAIRT 144 (164)
T ss_pred HHhhc--EEEEeCCHHHHHHHHHHHHHH
Confidence 33332 222 23777777777776543
No 253
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=48.92 E-value=22 Score=23.89 Aligned_cols=38 Identities=29% Similarity=0.416 Sum_probs=25.7
Q ss_pred hHHHHHhhccEEEecCchHH---------HHHHHHhCCCEEEEeCCC
Q 033044 28 SIADHLSSASLVISHAGSGS---------IFETLRLGKPLIVVVNED 65 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~T---------i~E~l~~g~P~I~vP~~~ 65 (128)
.+.+.|..|+++|--+|.-| +..++..|+|+|.|-.+.
T Consensus 63 ~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~~~~~Ii~V~~~~ 109 (130)
T PF08937_consen 63 KIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALKKGKPIIGVYLPG 109 (130)
T ss_dssp HHHHHHHTEEEEEEE--TT----HHHHHHHHHHTTT---EEEEETT-
T ss_pred HHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHHCCCCEEEEECCC
Confidence 47889999999999999988 445667899999997764
No 254
>PRK13463 phosphatase PhoE; Provisional
Probab=48.85 E-value=16 Score=26.45 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=18.0
Q ss_pred EEEecCchHHHHHHHHhCCCE
Q 033044 38 LVISHAGSGSIFETLRLGKPL 58 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P~ 58 (128)
+||||+|...+.-+...|.|.
T Consensus 147 lvVsHg~~ir~~~~~~~~~~~ 167 (203)
T PRK13463 147 LIVSHAAAAKLLVGHFAGIEI 167 (203)
T ss_pred EEEeChHHHHHHHHHHhCCCH
Confidence 899999998888888888664
No 255
>COG0379 NadA Quinolinate synthase [Coenzyme metabolism]
Probab=48.68 E-value=12 Score=29.90 Aligned_cols=47 Identities=11% Similarity=0.180 Sum_probs=40.3
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeC
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVN 63 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~ 63 (128)
.++..+..|++.-++.=+.||+++|-+-+--+.|.+.-+.++|++|-
T Consensus 121 ~P~~~vV~YvNtsA~vKA~~Di~cTSsNAvkvVe~~~~~~~Iif~PD 167 (324)
T COG0379 121 HPDAPVVTYVNTSAEVKAEADICCTSSNAVKVVESALDGDKILFLPD 167 (324)
T ss_pred CCCCceEEEeeChHHHHhhcCeEEecchHHHHHHhccCCCcEEEcCc
Confidence 35677888988778999999999999999999999866688888885
No 256
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=48.33 E-value=22 Score=28.42 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=22.9
Q ss_pred hccEEEecCchHHHHHHHH-----------------------hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR-----------------------LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----------------------~g~P~I~vP~~ 64 (128)
++|+||+=|| ||++++.. .++|.|.||..
T Consensus 83 ~~D~IIaiGG-Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 83 GADGVIGFGG-GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 6799999999 57776652 16899999986
No 257
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.25 E-value=23 Score=22.61 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=25.1
Q ss_pred HHHHHhhccEEE------ecCchHHHHHHH-HhCCCEEEEeCC
Q 033044 29 IADHLSSASLVI------SHAGSGSIFETL-RLGKPLIVVVNE 64 (128)
Q Consensus 29 ~~~~~~~adlvI------thaG~~Ti~E~l-~~g~P~I~vP~~ 64 (128)
++..+.+||+|| +|.-+..+.+.+ ..++|.++....
T Consensus 42 l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~ 84 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSR 84 (97)
T ss_pred HHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCC
Confidence 788889999885 455555555544 568888888643
No 258
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=48.05 E-value=20 Score=25.85 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=17.6
Q ss_pred EEEecCchHHHHHHHHhCCCE
Q 033044 38 LVISHAGSGSIFETLRLGKPL 58 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P~ 58 (128)
+||||+|.....=+..+|.|.
T Consensus 148 liVsHg~~ir~ll~~~lg~~~ 168 (204)
T TIGR03848 148 VACSHGDVIKSVLADALGMHL 168 (204)
T ss_pred EEEeCChHHHHHHHHHhCCCH
Confidence 799999998888778888764
No 259
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=47.63 E-value=34 Score=27.19 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=24.3
Q ss_pred HHHHHh--hccEEEecCchHHHHHHH---H------------------------hCCCEEEEeCC
Q 033044 29 IADHLS--SASLVISHAGSGSIFETL---R------------------------LGKPLIVVVNE 64 (128)
Q Consensus 29 ~~~~~~--~adlvIthaG~~Ti~E~l---~------------------------~g~P~I~vP~~ 64 (128)
..+.++ .+|+||+=|| ||++++. + .++|.|.||..
T Consensus 69 ~~~~~~~~~~D~IIavGG-Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 132 (367)
T cd08182 69 GIRLLREFGPDAVLAVGG-GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTT 132 (367)
T ss_pred HHHHHHhcCcCEEEEeCC-cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCC
Confidence 334444 5799999999 4666544 1 15799999986
No 260
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=47.42 E-value=28 Score=25.38 Aligned_cols=35 Identities=29% Similarity=0.565 Sum_probs=27.2
Q ss_pred HHHHhhccEEEe-----c--CchHHHHHH---HHhCCCEEEEeCC
Q 033044 30 ADHLSSASLVIS-----H--AGSGSIFET---LRLGKPLIVVVNE 64 (128)
Q Consensus 30 ~~~~~~adlvIt-----h--aG~~Ti~E~---l~~g~P~I~vP~~ 64 (128)
...|.+||+||. | +-.||.+|+ ++.|||++..-..
T Consensus 63 ~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~~~d 107 (172)
T COG3613 63 IKLIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAYRKD 107 (172)
T ss_pred HHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEEeec
Confidence 378999999985 4 345699995 6889999988653
No 261
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=47.39 E-value=37 Score=27.11 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=21.6
Q ss_pred hccEEEecCchHHHHHHHHh-----------------------CCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRL-----------------------GKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~-----------------------g~P~I~vP~~ 64 (128)
.+|+||+=|| ||.+++... .+|.|.||..
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTT 132 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTL 132 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCC
Confidence 6799999999 566665521 2679999985
No 262
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=47.36 E-value=16 Score=27.16 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=17.5
Q ss_pred EEEecCchHHHHHHHHhCCC
Q 033044 38 LVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P 57 (128)
+||||+|...+.-+...|.|
T Consensus 178 lvVsHg~vir~ll~~~~~~~ 197 (228)
T PRK14116 178 IIAAHGNSLRALTKYIENIS 197 (228)
T ss_pred EEEcChHHHHHHHHHHhCCC
Confidence 89999999888888888865
No 263
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=46.95 E-value=25 Score=28.26 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=23.6
Q ss_pred hccEEEecCchHHHHHHHH-------------------------hCCCEEEEeCCC
Q 033044 35 SASLVISHAGSGSIFETLR-------------------------LGKPLIVVVNED 65 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-------------------------~g~P~I~vP~~~ 65 (128)
.+|+||+=|| ||++++.. .++|.|.||...
T Consensus 87 ~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTa 141 (382)
T PRK10624 87 GADYLIAIGG-GSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTA 141 (382)
T ss_pred CCCEEEEeCC-hHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCC
Confidence 5899999999 57777763 147999999863
No 264
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=46.94 E-value=24 Score=28.25 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=23.2
Q ss_pred hhccEEEecCchHHHHHHHH-----------------------hCCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLR-----------------------LGKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~-----------------------~g~P~I~vP~~ 64 (128)
..+|+||+=|| ||++++.. .++|.|.||..
T Consensus 79 ~~~D~IIaiGG-GS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 79 GGCDVIIALGG-GSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred cCCCEEEEeCC-chHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 36799999999 57777552 25799999986
No 265
>PRK00861 putative lipid kinase; Reviewed
Probab=46.85 E-value=55 Score=25.12 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=24.1
Q ss_pred ccEEEecCchHHHHHHHH----hCCCEEEEeCC
Q 033044 36 ASLVISHAGSGSIFETLR----LGKPLIVVVNE 64 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l~----~g~P~I~vP~~ 64 (128)
.|+||.-||=||+.|++. .+.|+-++|..
T Consensus 58 ~d~vv~~GGDGTl~evv~~l~~~~~~lgviP~G 90 (300)
T PRK00861 58 AELIIASGGDGTLSAVAGALIGTDIPLGIIPRG 90 (300)
T ss_pred CCEEEEECChHHHHHHHHHHhcCCCcEEEEcCC
Confidence 489999999999999884 35677888986
No 266
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=46.38 E-value=24 Score=28.02 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=22.7
Q ss_pred hccEEEecCchHHHHHHHH-----h------------------CCCEEEEeCCC
Q 033044 35 SASLVISHAGSGSIFETLR-----L------------------GKPLIVVVNED 65 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----~------------------g~P~I~vP~~~ 65 (128)
.+|+||+=|| ||++++.. + ++|.|.||...
T Consensus 80 ~~d~IiaiGG-Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 80 GCDGVIAVGG-GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 5799999999 56666542 2 78999999863
No 267
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=45.97 E-value=24 Score=28.20 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=22.4
Q ss_pred hccEEEecCchHHHHHHHH---------------------------hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR---------------------------LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~---------------------------~g~P~I~vP~~ 64 (128)
++|+||+=|| ||++++.. -++|.|.||..
T Consensus 75 ~~D~IIaiGG-GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 130 (374)
T cd08183 75 GCDVVIAIGG-GSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTT 130 (374)
T ss_pred CCCEEEEecC-chHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCC
Confidence 5899999999 56666542 15799999986
No 268
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=45.93 E-value=21 Score=24.36 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=14.5
Q ss_pred HHHHHhhccEEEecCchH
Q 033044 29 IADHLSSASLVISHAGSG 46 (128)
Q Consensus 29 ~~~~~~~adlvIthaG~~ 46 (128)
+.+.+.++|+|||-||.|
T Consensus 50 l~~~~~~~D~VittGG~g 67 (144)
T PF00994_consen 50 LRRALDRADLVITTGGTG 67 (144)
T ss_dssp HHHHHHTTSEEEEESSSS
T ss_pred HHhhhccCCEEEEcCCcC
Confidence 555567889999999976
No 269
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=45.51 E-value=25 Score=28.17 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=22.8
Q ss_pred hccEEEecCchHHHHHHH---Hh--------------------CCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETL---RL--------------------GKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l---~~--------------------g~P~I~vP~~ 64 (128)
++|+||+=|| ||++++. +. .+|.|.||..
T Consensus 85 ~~d~IIaiGG-GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 136 (377)
T cd08188 85 GCDVIIAVGG-GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTT 136 (377)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 6799999999 5777766 22 3699999986
No 270
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=45.27 E-value=20 Score=26.61 Aligned_cols=20 Identities=20% Similarity=0.061 Sum_probs=17.3
Q ss_pred EEEecCchHHHHHHHHhCCC
Q 033044 38 LVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P 57 (128)
+||||+|...+.=+...|.|
T Consensus 178 lvVsHg~vir~l~~~~~~~~ 197 (228)
T PRK14119 178 LVSAHGNSIRALIKYLEDVS 197 (228)
T ss_pred EEEeChHHHHHHHHHHhCCC
Confidence 89999999888888888866
No 271
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=45.14 E-value=39 Score=26.85 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=12.9
Q ss_pred ccEEEecCchHHHHHHH
Q 033044 36 ASLVISHAGSGSIFETL 52 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l 52 (128)
+|+||+=|| ||++++.
T Consensus 81 ~D~IIaiGG-GSviD~a 96 (355)
T TIGR03405 81 CDLVIALGG-GSVIDTA 96 (355)
T ss_pred CCEEEEeCC-ccHHHHH
Confidence 899999999 5666655
No 272
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=44.77 E-value=76 Score=25.23 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=29.1
Q ss_pred cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHH----HHHh-CCCEEEe
Q 033044 42 HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAE----ELAD-RKHLYCA 87 (128)
Q Consensus 42 haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~----~l~~-~g~~~~~ 87 (128)
++|+.+++-+++.|.-.+++|-... + .....+ ++.+ ++.++++
T Consensus 173 ~~G~LAl~~ala~~a~~iliPE~~~-~--~~~l~~~v~~~~~~g~~~~vvv 220 (324)
T TIGR02483 173 HAGWIALHSGIAGGADVILIPEIPF-D--IDSVCEKVRERFARGKRFAIVV 220 (324)
T ss_pred ChhHHHHHHHhccCCCEEEecCCCC-C--HHHHHHHHHHHHHhCCCceEEE
Confidence 7899999999999988999997532 2 333333 3344 5666553
No 273
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=44.66 E-value=17 Score=24.69 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=14.4
Q ss_pred HHHHHhhccEEEecCchH
Q 033044 29 IADHLSSASLVISHAGSG 46 (128)
Q Consensus 29 ~~~~~~~adlvIthaG~~ 46 (128)
+.++++.+|+||+-||.|
T Consensus 52 i~~~~~~~DlvittGG~g 69 (133)
T cd00758 52 LIEASREADLVLTTGGTG 69 (133)
T ss_pred HHHHHhcCCEEEECCCCC
Confidence 555566799999999976
No 274
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.93 E-value=24 Score=27.65 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=20.1
Q ss_pred EeChhhHHHHHhhccEEEecCchHHHHH
Q 033044 23 FTFSSSIADHLSSASLVISHAGSGSIFE 50 (128)
Q Consensus 23 ~~f~~~~~~~~~~adlvIthaG~~Ti~E 50 (128)
..++.++.+..++||+||+..|.--+.-
T Consensus 189 hs~T~dl~~~~k~ADIvIsAvGkp~~i~ 216 (282)
T PRK14180 189 HRFTTDLKSHTTKADILIVAVGKPNFIT 216 (282)
T ss_pred cCCCCCHHHHhhhcCEEEEccCCcCcCC
Confidence 3556778888888888888877644433
No 275
>PRK13337 putative lipid kinase; Reviewed
Probab=43.83 E-value=55 Score=25.25 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=23.5
Q ss_pred ccEEEecCchHHHHHHHH--h----CCCEEEEeCC
Q 033044 36 ASLVISHAGSGSIFETLR--L----GKPLIVVVNE 64 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l~--~----g~P~I~vP~~ 64 (128)
.|+||.-||=||+.|++. + ..|+-++|..
T Consensus 58 ~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 58 FDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred CCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 489999999999999986 3 2367778876
No 276
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=43.51 E-value=21 Score=25.72 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=18.2
Q ss_pred cEEEecCchHHHHHHHHhCCCE
Q 033044 37 SLVISHAGSGSIFETLRLGKPL 58 (128)
Q Consensus 37 dlvIthaG~~Ti~E~l~~g~P~ 58 (128)
-+||||+|...+.-+..+|.|.
T Consensus 144 iliVsHg~~i~~l~~~~~~~~~ 165 (199)
T PRK15004 144 LLIVSHQGVLSLLIARLLGMPA 165 (199)
T ss_pred EEEEcChHHHHHHHHHHhCCCH
Confidence 4799999998888888888764
No 277
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.47 E-value=9.4 Score=33.62 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=35.5
Q ss_pred HHHhhccEEEe---cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCE
Q 033044 31 DHLSSASLVIS---HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHL 84 (128)
Q Consensus 31 ~~~~~adlvIt---haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~ 84 (128)
+..+-||+++- -.|.+|-+|.+++|+|+|.+|...++ -..-+..+...|++
T Consensus 831 rr~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lA---srVa~Sll~~~Gl~ 884 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLA---SRVAASLLTALGLG 884 (966)
T ss_pred HhhhhhhhcccCcCcCCcccchhhhccCCceeecccHHHH---HHHHHHHHHHcccH
Confidence 44455666653 35889999999999999999985321 13345566667877
No 278
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=43.35 E-value=22 Score=24.78 Aligned_cols=20 Identities=30% Similarity=0.502 Sum_probs=17.0
Q ss_pred EEEecCchHHHHHHHHhCCC
Q 033044 38 LVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P 57 (128)
+||||+|...++-+...|.|
T Consensus 141 lvVsHg~~i~~l~~~~~~~~ 160 (177)
T TIGR03162 141 LIVTHGGVIRALLAHLLGLP 160 (177)
T ss_pred EEEECHHHHHHHHHHHhCCC
Confidence 79999999888877788865
No 279
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=43.30 E-value=1.1e+02 Score=22.72 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=36.3
Q ss_pred hhHHHHHhhccEEEecCchHHHHH-----HHHhCCCEEEE-eCCC--CCCchHHHHHHHHHhCCCEEE
Q 033044 27 SSIADHLSSASLVISHAGSGSIFE-----TLRLGKPLIVV-VNED--LMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 27 ~~~~~~~~~adlvIthaG~~Ti~E-----~l~~g~P~I~v-P~~~--~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
.++...+.+.+.+|.-+|+..+.+ ++..|-+.|.| |..- .-..+.....+.+.+.|..++
T Consensus 64 ~~l~~~l~~~g~~IVSG~A~GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~~i~~~gglli 131 (220)
T TIGR00732 64 RKLAEELAKNGVTIVSGLALGIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAAKIAENGGLLL 131 (220)
T ss_pred HHHHHHHHhCCCEEEcCchhhHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHHHHHHcCCEEE
Confidence 345566788887777788766766 44567787776 4431 001234567777777774433
No 280
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=43.19 E-value=1.1e+02 Score=25.75 Aligned_cols=70 Identities=10% Similarity=0.147 Sum_probs=45.6
Q ss_pred HHHhhccE-EEecCchHHHHHH-------------HHhCCCEEEEeCCCCC---CchHHHHHHHHHhCCCEEEe------
Q 033044 31 DHLSSASL-VISHAGSGSIFET-------------LRLGKPLIVVVNEDLM---DNHQSELAEELADRKHLYCA------ 87 (128)
Q Consensus 31 ~~~~~adl-vIthaG~~Ti~E~-------------l~~g~P~I~vP~~~~~---~~~Q~~nA~~l~~~g~~~~~------ 87 (128)
++-.+||+ ||.=|-++|+... ++.++|++++|..... ..--.+|...|.+.|+.++-
T Consensus 142 ~la~~aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~vi~P~~g~l 221 (475)
T PRK13982 142 RLARDCDLIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHMIGPNAGEM 221 (475)
T ss_pred hhhhhcCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCcc
Confidence 56677885 4555666665543 4568999999986321 12224788999999987641
Q ss_pred ------------ChHHHHHHHHhcc
Q 033044 88 ------------HPQSLHQVIVGMD 100 (128)
Q Consensus 88 ------------~~~~l~~~i~~l~ 100 (128)
+++++.+.+.+++
T Consensus 222 A~~g~~G~Grm~e~~~I~~~v~~~~ 246 (475)
T PRK13982 222 AERGEAGVGRMAEPLEIAAAAEALL 246 (475)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHH
Confidence 4667777666544
No 281
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=43.01 E-value=21 Score=26.46 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=17.2
Q ss_pred EEEecCchHHHHHHHHhCCCE
Q 033044 38 LVISHAGSGSIFETLRLGKPL 58 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P~ 58 (128)
+||||+|...+.=+...|.|.
T Consensus 177 lvVsHggvir~ll~~~l~~~~ 197 (227)
T PRK14118 177 LVAAHGNSLRALAKHIEGISD 197 (227)
T ss_pred EEEeCHHHHHHHHHHHhCCCH
Confidence 899999988777777788664
No 282
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=42.76 E-value=32 Score=27.20 Aligned_cols=29 Identities=34% Similarity=0.662 Sum_probs=23.2
Q ss_pred hccEEEecCchHHHHHHHH-----hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR-----LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~-----~g~P~I~vP~~ 64 (128)
.+|+||+=|| ||++++.. .++|.|.||..
T Consensus 76 ~~D~iIavGG-Gs~~D~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 76 GADVIIGIGG-GKVLDTAKAVADRLGVPVITVPTL 109 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHhCCCEEEecCc
Confidence 5899999999 57776542 38999999986
No 283
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=42.74 E-value=32 Score=26.45 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=28.8
Q ss_pred HHHHhhccEEEecCchHHHHHHHHh----CCCEEEEeCC
Q 033044 30 ADHLSSASLVISHAGSGSIFETLRL----GKPLIVVVNE 64 (128)
Q Consensus 30 ~~~~~~adlvIthaG~~Ti~E~l~~----g~P~I~vP~~ 64 (128)
......+|++|+-||=||+..++.. ++|++-|+..
T Consensus 71 ~~~~~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~G 109 (285)
T PF01513_consen 71 EMLEEGVDLIIVLGGDGTFLRAARLFGDYDIPILGINTG 109 (285)
T ss_dssp HHHCCCSSEEEEEESHHHHHHHHHHCTTST-EEEEEESS
T ss_pred hhcccCCCEEEEECCCHHHHHHHHHhccCCCcEEeecCC
Confidence 4567999999999999999999853 5688888764
No 284
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.33 E-value=1.6e+02 Score=23.71 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=41.1
Q ss_pred CcccEEEEeChh--hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCC
Q 033044 16 GLLAVDCFTFSS--SIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 16 ~~~~~~v~~f~~--~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
...++.+.+|++ +.++++--||+-+-||-- |..-+...|+|.+---+|
T Consensus 236 ~~lrvvklPFvpqddyd~LL~lcD~n~VRGED-SFVRAq~agkPflWHIYp 285 (370)
T COG4394 236 AKLRVVKLPFVPQDDYDELLWLCDFNLVRGED-SFVRAQLAGKPFLWHIYP 285 (370)
T ss_pred cceEEEEecCCcHhHHHHHHHhcccceeecch-HHHHHHHcCCCcEEEecC
Confidence 457889999986 499999999999999885 899999999998866555
No 285
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=42.31 E-value=44 Score=26.57 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=21.9
Q ss_pred ccEEEecCchHHHHHHH-------HhCCCEEEEeCC
Q 033044 36 ASLVISHAGSGSIFETL-------RLGKPLIVVVNE 64 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l-------~~g~P~I~vP~~ 64 (128)
+|+||+=|| |++.++. ..|+|.|.||..
T Consensus 93 ~d~IIavGG-Gsv~D~aK~iA~~~~~gip~i~IPTT 127 (358)
T PRK00002 93 SDTLIALGG-GVIGDLAGFAAATYMRGIRFIQVPTT 127 (358)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHhcCCCCEEEcCch
Confidence 399999999 5666655 238999999985
No 286
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=42.24 E-value=31 Score=27.16 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=20.9
Q ss_pred cEEEecCchHHHHHHH-------HhCCCEEEEeCC
Q 033044 37 SLVISHAGSGSIFETL-------RLGKPLIVVVNE 64 (128)
Q Consensus 37 dlvIthaG~~Ti~E~l-------~~g~P~I~vP~~ 64 (128)
|+||+=|| ||++++. ..|+|.|.||..
T Consensus 83 d~IIavGG-Gsv~D~aK~iA~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 83 STIIALGG-GVVGDLAGFVAATYMRGIRFIQVPTT 116 (344)
T ss_pred CEEEEEcC-hHHHHHHHHHHHHHccCCCEEEecCc
Confidence 89999999 5666544 237999999985
No 287
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=42.15 E-value=38 Score=24.32 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=30.6
Q ss_pred hccEEEecCc----------------hHHHHHHHHhCCCEEEEeCCC-C-CCchHHHHHHHHHhC
Q 033044 35 SASLVISHAG----------------SGSIFETLRLGKPLIVVVNED-L-MDNHQSELAEELADR 81 (128)
Q Consensus 35 ~adlvIthaG----------------~~Ti~E~l~~g~P~I~vP~~~-~-~~~~Q~~nA~~l~~~ 81 (128)
.+|.+|-.|| ......+...++|+++++..- . .........+.+.++
T Consensus 63 ~~~~vii~GGg~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g~gp~~~~~~~~~~~~~l~~ 127 (286)
T PF04230_consen 63 NADDVIIGGGGGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQGIGPFRSEEFKKLLRRILSK 127 (286)
T ss_pred cCCeEEEECCcccccCCCcchhhHHHHHHHHHHHhcCCCeEEECceECccCCHHHHHHHHHHHhC
Confidence 4677777777 667778889999999998753 1 112333445555554
No 288
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=42.09 E-value=33 Score=27.85 Aligned_cols=30 Identities=30% Similarity=0.517 Sum_probs=22.9
Q ss_pred hhccEEEecCchHHHHHHHHh-----------------------CCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLRL-----------------------GKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~~-----------------------g~P~I~vP~~ 64 (128)
..+|+||+=|| ||++++... .+|+|.||..
T Consensus 105 ~~~D~IiavGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt 157 (395)
T PRK15454 105 SGCDGVIAFGG-GSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT 157 (395)
T ss_pred cCcCEEEEeCC-hHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC
Confidence 47899999999 567666522 4699999986
No 289
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=41.78 E-value=30 Score=24.52 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=38.6
Q ss_pred CcccEEEEeChhhHHHH---HhhccEEEecCchHHHHH----------HHHhCCCEEEEeCCCCCCchHHH
Q 033044 16 GLLAVDCFTFSSSIADH---LSSASLVISHAGSGSIFE----------TLRLGKPLIVVVNEDLMDNHQSE 73 (128)
Q Consensus 16 ~~~~~~v~~f~~~~~~~---~~~adlvIthaG~~Ti~E----------~l~~g~P~I~vP~~~~~~~~Q~~ 73 (128)
.+.+++++.+..+.... +...|.+|--+|.++..+ +...++|++.|=+ +||..
T Consensus 20 ~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~-----G~Q~l 85 (192)
T PF00117_consen 20 LGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICL-----GHQIL 85 (192)
T ss_dssp TTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETH-----HHHHH
T ss_pred CCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCccccccccccccccccccceEEEEEee-----hhhhh
Confidence 46788899987653443 688888888899776663 3345999999987 57774
No 290
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=41.74 E-value=23 Score=26.38 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=17.1
Q ss_pred EEEecCchHHHHHHHHhCCC
Q 033044 38 LVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P 57 (128)
+||||+|...+.=+...|.|
T Consensus 178 lvVsHg~~ir~ll~~~lg~~ 197 (230)
T PRK14117 178 FVGAHGNSIRALVKHIKGLS 197 (230)
T ss_pred EEEeChHHHHHHHHHHhCcC
Confidence 89999999888877888865
No 291
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=41.52 E-value=1e+02 Score=20.40 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=42.5
Q ss_pred cEEEEeCh--hhHHHHHhhccEEEecCch---HHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeCh
Q 033044 19 AVDCFTFS--SSIADHLSSASLVISHAGS---GSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHP 89 (128)
Q Consensus 19 ~~~v~~f~--~~~~~~~~~adlvIthaG~---~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~ 89 (128)
.+.+..-. +++.+.+..+|++|++.+. -.+.+.+ -+...|...-.+ -++ ..-..+.++|+.+...+
T Consensus 20 ~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G---~d~-id~~~a~~~gI~V~n~~ 90 (133)
T PF00389_consen 20 EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAG---VDN-IDLEAAKERGIPVTNVP 90 (133)
T ss_dssp EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSS---CTT-B-HHHHHHTTSEEEE-T
T ss_pred eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccc---cCc-ccHHHHhhCeEEEEEeC
Confidence 45555532 4577899999999998886 3344444 677788876543 223 35677888999987544
No 292
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=41.04 E-value=30 Score=27.33 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=21.3
Q ss_pred cEEEecCchHHHHHHH-------HhCCCEEEEeCC
Q 033044 37 SLVISHAGSGSIFETL-------RLGKPLIVVVNE 64 (128)
Q Consensus 37 dlvIthaG~~Ti~E~l-------~~g~P~I~vP~~ 64 (128)
|+||+=|| |++.++. ..|+|.|.||..
T Consensus 87 d~IIaiGG-Gsv~D~ak~vA~~~~rgip~i~VPTT 120 (345)
T cd08195 87 SLIIALGG-GVVGDLAGFVAATYMRGIDFIQIPTT 120 (345)
T ss_pred CeEEEECC-hHHHhHHHHHHHHHhcCCCeEEcchh
Confidence 89999999 5666654 248999999985
No 293
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=41.01 E-value=46 Score=26.64 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=13.1
Q ss_pred hccEEEecCchHHHHHHH
Q 033044 35 SASLVISHAGSGSIFETL 52 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l 52 (128)
.+|+||+=|| ||++++.
T Consensus 83 ~~D~IiavGG-GS~iD~a 99 (380)
T cd08185 83 GCDFVVGLGG-GSSMDTA 99 (380)
T ss_pred CCCEEEEeCC-ccHHHHH
Confidence 5799999999 5666654
No 294
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=40.47 E-value=1.3e+02 Score=21.98 Aligned_cols=60 Identities=22% Similarity=0.376 Sum_probs=40.0
Q ss_pred hhHHHHHhhccEEEe----------cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChH
Q 033044 27 SSIADHLSSASLVIS----------HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC-AHPQ 90 (128)
Q Consensus 27 ~~~~~~~~~adlvIt----------haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~-~~~~ 90 (128)
+.+...+..||++|- +.=.-.+-|.+.+++|+|+.-.... . -...+.+.+.|..++ +|++
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrs--r--~P~v~~ik~~~~v~v~lt~~ 162 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRS--R--HPLVQRIKKLGGVYVFLTPE 162 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEeccc--C--ChHHHHhhhcCCEEEEEccc
Confidence 456677888998763 3333467788889999887744322 2 246777888887766 6554
No 295
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=40.47 E-value=71 Score=25.36 Aligned_cols=85 Identities=22% Similarity=0.328 Sum_probs=44.0
Q ss_pred CCccccCCCcccCCCCcccEEEEeChhhHHHHHhhccEEEecCchHHHHHH---HHhCCCEEEEeCCC-CCCchHHHHHH
Q 033044 1 MGQGTYLPAESIGEDGLLAVDCFTFSSSIADHLSSASLVISHAGSGSIFET---LRLGKPLIVVVNED-LMDNHQSELAE 76 (128)
Q Consensus 1 ~g~~~~~p~~~~~~~~~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~---l~~g~P~I~vP~~~-~~~~~Q~~nA~ 76 (128)
.|+|.+.|... +-+ ...-+++||+||.........+. ...++|++..-... ...+-+.....
T Consensus 158 ~gng~lLPaG~-------------LRE-p~~~l~rAD~vi~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 223 (326)
T PF02606_consen 158 FGNGFLLPAGP-------------LRE-PLSALKRADAVIVTGCDASDPAIEKAIRPGKPIFSARLKPEGLRNLNTGSIE 223 (326)
T ss_pred CcCCccCCCCc-------------ccC-ChhHhCcccEEEEcCCCcchhHHHHhhhcCCceEEEEEEecccccccccchh
Confidence 37788888752 222 24589999988775443333332 24678887653321 00000111111
Q ss_pred HHHhCCCE-EE--eChHHHHHHHHhc
Q 033044 77 ELADRKHL-YC--AHPQSLHQVIVGM 99 (128)
Q Consensus 77 ~l~~~g~~-~~--~~~~~l~~~i~~l 99 (128)
.+...-.. ++ -+|+.+.+.++++
T Consensus 224 ~l~~~~v~a~sGIg~P~~F~~~L~~~ 249 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNPERFFDTLESL 249 (326)
T ss_pred hccCCeeEEEEEcCChHHHHHHHHHc
Confidence 13333222 22 2788888888775
No 296
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=40.03 E-value=77 Score=24.09 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=26.1
Q ss_pred hHHHHHhhccEEEecCchHHH----------------HHHHHhCCCEEEEeCC
Q 033044 28 SIADHLSSASLVISHAGSGSI----------------FETLRLGKPLIVVVNE 64 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti----------------~E~l~~g~P~I~vP~~ 64 (128)
++-+.+.++|++|.-||. .+ .-+..+|+|+++++..
T Consensus 57 ~~~~~l~~~D~vI~gGG~-l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 57 AVLRALRRADVVIWGGGS-LLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred HHHHHHHHCCEEEECCcc-cccCCcccccHHHHHHHHHHHHHcCCCEEEEecc
Confidence 567789999999987662 22 2234579999999775
No 297
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=39.92 E-value=44 Score=23.95 Aligned_cols=31 Identities=35% Similarity=0.417 Sum_probs=22.8
Q ss_pred HHHHHhhcc----EEEecCchHHHHHHHHhCCCEE
Q 033044 29 IADHLSSAS----LVISHAGSGSIFETLRLGKPLI 59 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~Ti~E~l~~g~P~I 59 (128)
+.++..... +||||+|...+.=+...|.+.-
T Consensus 136 ~~~~~~~~~~~~vlvVsHg~~ir~l~~~~~~~~~~ 170 (208)
T COG0406 136 LAELLRSPPGNNVLVVSHGGVIRALLAYLLGLDLE 170 (208)
T ss_pred HHHHHHhcCCCeEEEEEChHHHHHHHHHhcCCChh
Confidence 555666544 9999999988777777776653
No 298
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=39.90 E-value=45 Score=27.07 Aligned_cols=30 Identities=40% Similarity=0.601 Sum_probs=23.9
Q ss_pred hccEEEecCchHHHHHHH-----HhCCCEEEEeCCC
Q 033044 35 SASLVISHAGSGSIFETL-----RLGKPLIVVVNED 65 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l-----~~g~P~I~vP~~~ 65 (128)
++|+||+=|| |++.+.. ..|+|.|.+|...
T Consensus 84 ~~d~vIGVGG-Gk~iD~aK~~A~~~~~pfIsvPT~A 118 (360)
T COG0371 84 GADVVIGVGG-GKTIDTAKAAAYRLGLPFISVPTIA 118 (360)
T ss_pred CCCEEEEecC-cHHHHHHHHHHHHcCCCEEEecCcc
Confidence 4789999999 5666654 4799999999874
No 299
>PRK08322 acetolactate synthase; Reviewed
Probab=39.73 E-value=1.7e+02 Score=24.53 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=41.2
Q ss_pred HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEeCC----C-CCCchHHHHHHHHHhC--CCE-EEeChH
Q 033044 29 IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVVNE----D-LMDNHQSELAEELADR--KHL-YCAHPQ 90 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP~~----~-~~~~~Q~~nA~~l~~~--g~~-~~~~~~ 90 (128)
|++-++++. ++++|.|.| .+.+|..-++|+|++.-. . ..+.+|...-..+.+. .+. .+.+++
T Consensus 53 ~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~ 132 (547)
T PRK08322 53 MAATYGRLTGKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPD 132 (547)
T ss_pred HHHHHHHhhCCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHH
Confidence 555555554 888888765 578899999999999421 1 1123443222222222 112 223677
Q ss_pred HHHHHHHhcc
Q 033044 91 SLHQVIVGMD 100 (128)
Q Consensus 91 ~l~~~i~~l~ 100 (128)
++.+.+.+..
T Consensus 133 ~~~~~i~~A~ 142 (547)
T PRK08322 133 NIPEVVREAF 142 (547)
T ss_pred HHHHHHHHHH
Confidence 7777666553
No 300
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=39.67 E-value=30 Score=27.08 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=17.8
Q ss_pred EEEecCchHHHHHHHHhCCC
Q 033044 38 LVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P 57 (128)
+||||+|...+.-+..+|.|
T Consensus 236 LVVsHGgvIR~ll~~lLglp 255 (299)
T PTZ00122 236 IIVCHGNVIRYLVCRALQLP 255 (299)
T ss_pred EEEeCChHHHHHHHHHhCcC
Confidence 89999999988888888866
No 301
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.64 E-value=28 Score=27.25 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=23.5
Q ss_pred eChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 24 TFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
.+++++.++.++||+||+-.|.--+...-...-=.++|
T Consensus 189 s~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvI 226 (281)
T PRK14183 189 IFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVI 226 (281)
T ss_pred CCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEE
Confidence 45677888888888888887764444333333333443
No 302
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=39.51 E-value=58 Score=24.84 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=28.2
Q ss_pred eChhhHHHHH---hhccEEEecCchHH-----HHHHHHhCCCEEEEeCC
Q 033044 24 TFSSSIADHL---SSASLVISHAGSGS-----IFETLRLGKPLIVVVNE 64 (128)
Q Consensus 24 ~f~~~~~~~~---~~adlvIthaG~~T-----i~E~l~~g~P~I~vP~~ 64 (128)
+|..+++..| -++|++||+-..++ +.-|..+|.|+|+|-+|
T Consensus 180 Pfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 228 (249)
T PF02571_consen 180 PFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRP 228 (249)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 5655554443 36899999854333 34466899999999776
No 303
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=39.01 E-value=34 Score=29.06 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=22.9
Q ss_pred hccEEEecCchHHHHHHH-------HhCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETL-------RLGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l-------~~g~P~I~vP~~ 64 (128)
++|+||+=|| |++.++. ..|+|.|.||..
T Consensus 269 r~D~IIAIGG-Gsv~D~AKfvA~~y~rGi~~i~vPTT 304 (542)
T PRK14021 269 RSDAIVGLGG-GAATDLAGFVAATWMRGIRYVNCPTS 304 (542)
T ss_pred CCcEEEEEcC-hHHHHHHHHHHHHHHcCCCEEEeCCh
Confidence 5899999999 4665543 359999999984
No 304
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=38.96 E-value=61 Score=24.85 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=27.1
Q ss_pred eChhhHHHH-Hh--hccEEEecCchHH------HHHHHHhCCCEEEEeCC
Q 033044 24 TFSSSIADH-LS--SASLVISHAGSGS------IFETLRLGKPLIVVVNE 64 (128)
Q Consensus 24 ~f~~~~~~~-~~--~adlvIthaG~~T------i~E~l~~g~P~I~vP~~ 64 (128)
+|..+++.. ++ ++|++||+-..++ +.-|..+|.|+|+|-+|
T Consensus 183 Pfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP 232 (256)
T TIGR00715 183 PFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARP 232 (256)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCC
Confidence 455454443 33 5889999844222 44466789999999776
No 305
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=38.91 E-value=1.1e+02 Score=25.78 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=26.2
Q ss_pred HHHHHhhcc----EEEecCchHH------HHHHHHhCCCEEEEe
Q 033044 29 IADHLSSAS----LVISHAGSGS------IFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~T------i~E~l~~g~P~I~vP 62 (128)
|++-++++. ++++|.|.|. +.+|..-+.|+|++.
T Consensus 57 mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~ 100 (574)
T PRK07979 57 MADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLS 100 (574)
T ss_pred HHHHHHHHhCCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEE
Confidence 666666554 7888888765 578889999999994
No 306
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=38.85 E-value=22 Score=24.47 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=14.5
Q ss_pred HHHHHhhccEEEecCchHH
Q 033044 29 IADHLSSASLVISHAGSGS 47 (128)
Q Consensus 29 ~~~~~~~adlvIthaG~~T 47 (128)
+.++...+|++|+-||.|.
T Consensus 60 l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 60 LRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred HHHHHhCCCEEEECCCCCC
Confidence 4455667999999999764
No 307
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.71 E-value=30 Score=27.31 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=25.5
Q ss_pred eChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 24 TFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
.+++++.++.++||+||+..|.--+...-....=.++|
T Consensus 192 s~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVI 229 (294)
T PRK14187 192 SATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVI 229 (294)
T ss_pred CCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 44677888999999999988865554444444334444
No 308
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=38.39 E-value=40 Score=27.18 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=22.3
Q ss_pred hhccEEEecCchHHHHHHH---Hh--------------------CCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETL---RL--------------------GKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l---~~--------------------g~P~I~vP~~ 64 (128)
..+|+||+=|| ||++++. +. .+|.|.||..
T Consensus 87 ~~~D~IiaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTT 139 (383)
T PRK09860 87 NNCDSVISLGG-GSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTT 139 (383)
T ss_pred cCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCC
Confidence 46899999999 4666654 21 4699999986
No 309
>PRK03482 phosphoglycerate mutase; Provisional
Probab=38.14 E-value=31 Score=25.07 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=17.6
Q ss_pred EEEecCchHHHHHHHHhCCCE
Q 033044 38 LVISHAGSGSIFETLRLGKPL 58 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P~ 58 (128)
+||||+|...+.=+...|.|.
T Consensus 146 liVsHg~~i~~l~~~l~~~~~ 166 (215)
T PRK03482 146 LLVSHGIALGCLVSTILGLPA 166 (215)
T ss_pred EEEeCcHHHHHHHHHHhCCCh
Confidence 899999988888788888663
No 310
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=38.03 E-value=1.7e+02 Score=21.89 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=31.2
Q ss_pred EEeChhhHHHHHhhccEEEecCchHH------HHH----HHHhCCCEEEEeCC
Q 033044 22 CFTFSSSIADHLSSASLVISHAGSGS------IFE----TLRLGKPLIVVVNE 64 (128)
Q Consensus 22 v~~f~~~~~~~~~~adlvIthaG~~T------i~E----~l~~g~P~I~vP~~ 64 (128)
+-.+.+.+.++++++|+++...|.++ +.+ +-..++|+|+=|..
T Consensus 36 ~~~~~e~~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~ 88 (242)
T cd01170 36 MSDAPEEVEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVG 88 (242)
T ss_pred hcCCHHHHHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccc
Confidence 33778889999999999999888655 222 22458998776753
No 311
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=37.97 E-value=34 Score=23.79 Aligned_cols=46 Identities=11% Similarity=0.035 Sum_probs=28.2
Q ss_pred ccEEEEe-ChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeC
Q 033044 18 LAVDCFT-FSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVN 63 (128)
Q Consensus 18 ~~~~v~~-f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~ 63 (128)
..+.+.. ...++++.+++||+|||-.|.--+...-...-=.+++..
T Consensus 53 atV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vidv 99 (140)
T cd05212 53 ATVYSCDWKTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINC 99 (140)
T ss_pred CEEEEeCCCCcCHHHHHhhCCEEEEecCCCCccCHHHcCCCCEEEEc
Confidence 3444443 234688889999999998887655444444433455543
No 312
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.09 E-value=33 Score=26.83 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=19.5
Q ss_pred EeChhhHHHHHhhccEEEecCchHHHHH
Q 033044 23 FTFSSSIADHLSSASLVISHAGSGSIFE 50 (128)
Q Consensus 23 ~~f~~~~~~~~~~adlvIthaG~~Ti~E 50 (128)
..++.++.+...+||++|+..|.--+..
T Consensus 188 hs~T~nl~~~~~~ADIvIsAvGkp~~i~ 215 (282)
T PRK14166 188 HIKTKDLSLYTRQADLIIVAAGCVNLLR 215 (282)
T ss_pred CCCCCCHHHHHhhCCEEEEcCCCcCccC
Confidence 3456778888888888888777544433
No 313
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=36.91 E-value=24 Score=28.06 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.7
Q ss_pred hhhHHHHHhhccEEEecC
Q 033044 26 SSSIADHLSSASLVISHA 43 (128)
Q Consensus 26 ~~~~~~~~~~adlvItha 43 (128)
.+++++++++||+++.|.
T Consensus 188 ~~~Ld~lL~~sDiv~lh~ 205 (324)
T COG0111 188 VDSLDELLAEADILTLHL 205 (324)
T ss_pred cccHHHHHhhCCEEEEcC
Confidence 356999999999999986
No 314
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=36.83 E-value=90 Score=22.08 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=30.3
Q ss_pred EEEEeChhh-----HHHHHhhcc----EEEecCchHH------HHHHHHhCCCEEEEeC
Q 033044 20 VDCFTFSSS-----IADHLSSAS----LVISHAGSGS------IFETLRLGKPLIVVVN 63 (128)
Q Consensus 20 ~~v~~f~~~-----~~~~~~~ad----lvIthaG~~T------i~E~l~~g~P~I~vP~ 63 (128)
+++....++ |++-+.++. ++++++|.|+ +.|+..-+.|+|++.-
T Consensus 36 i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 36 FRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred ceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 444444433 555555555 7888888764 5688899999999943
No 315
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=36.48 E-value=54 Score=23.43 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=28.6
Q ss_pred ccEEEEeC-hhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 18 LAVDCFTF-SSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 18 ~~~~v~~f-~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
.++.+... .+++.+.+.+||+||+-.|.--+...-......+++
T Consensus 69 ~~V~v~~r~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viI 113 (168)
T cd01080 69 ATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVI 113 (168)
T ss_pred CEEEEEECCchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEE
Confidence 34444433 367889999999999999874344444444445555
No 316
>PRK13055 putative lipid kinase; Reviewed
Probab=36.38 E-value=40 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=23.4
Q ss_pred ccEEEecCchHHHHHHHHh------CCCEEEEeCC
Q 033044 36 ASLVISHAGSGSIFETLRL------GKPLIVVVNE 64 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l~~------g~P~I~vP~~ 64 (128)
.|+||.-||=||+.|++.. +.|+-++|..
T Consensus 60 ~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 60 FDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECCC
Confidence 5899999999999999843 3567778875
No 317
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=36.34 E-value=60 Score=26.43 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=46.0
Q ss_pred hhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHH--HH--HhCCCE-EEeChHHHHHHHHhcc
Q 033044 27 SSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAE--EL--ADRKHL-YCAHPQSLHQVIVGMD 100 (128)
Q Consensus 27 ~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~--~l--~~~g~~-~~~~~~~l~~~i~~l~ 100 (128)
.++.++|..+|++||-=- +...|.+...+|+|+.-. |.+|....+ .+ +...-+ ++-+.++|.++|....
T Consensus 278 ~di~dll~~sDiLITDyS-Sv~fdf~~l~KPiify~~----D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~ 351 (388)
T COG1887 278 ADINDLLLVSDILITDYS-SVIFDFMLLDKPIIFYTY----DLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYD 351 (388)
T ss_pred hhHHHHHhhhCEEEeech-HHHHHHHHhcCcEEEEec----ChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhh
Confidence 469999999999999988 489999999999999854 244441111 11 111112 2236677777776554
No 318
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=36.33 E-value=2.1e+02 Score=22.67 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=36.0
Q ss_pred cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHH----Hh-CCCEEEe------ChHHHHHHHHhc
Q 033044 42 HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEEL----AD-RKHLYCA------HPQSLHQVIVGM 99 (128)
Q Consensus 42 haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l----~~-~g~~~~~------~~~~l~~~i~~l 99 (128)
|+|+.++.-+++.|.-.+++|-.. .+ .....+.+ .+ ++.++++ +.+.|.+.+++.
T Consensus 171 ~~G~LA~~~ala~ga~~iliPE~~-~~--~~~~~~~i~~~~~~g~~~~vivvaEG~~~~~~l~~~l~~~ 236 (317)
T cd00763 171 HCGDIALAAGIAGGAEFIVIPEAE-FD--REEVANRIKAGIERGKKHAIVVVAEGVYDVDELAKEIEEA 236 (317)
T ss_pred ChHHHHHHHHHHcCCCEEEeCCCC-CC--HHHHHHHHHHHHHcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999998899998752 12 33333333 33 5566442 566677666654
No 319
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=36.01 E-value=1.1e+02 Score=24.32 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=29.2
Q ss_pred cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh-----CCCEEE
Q 033044 42 HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD-----RKHLYC 86 (128)
Q Consensus 42 haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~-----~g~~~~ 86 (128)
++|.-++.-+++.+.-.+++|-.....++....++.+.+ ++.+++
T Consensus 177 ~~G~Lal~~ala~~ad~iliPE~~~~~~~~~~~~~~i~~r~~~~~~~~vi 226 (338)
T cd00363 177 HCGDIALEAGLATGADIIFIPEEPAADEWEEEMVDVIKKRRERGKRHGIV 226 (338)
T ss_pred CHHHHHHHHHHHhCCCEEEeCCCCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 689999999999997789998653211234455554433 456644
No 320
>PRK01295 phosphoglyceromutase; Provisional
Probab=35.95 E-value=31 Score=25.17 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=17.7
Q ss_pred EEEecCchHHHHHHHHhCCCE
Q 033044 38 LVISHAGSGSIFETLRLGKPL 58 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P~ 58 (128)
+||||+|...+.-+...+.|.
T Consensus 154 liVtHg~~ir~l~~~~l~~~~ 174 (206)
T PRK01295 154 LVAAHGNSLRALVMVLDGLTP 174 (206)
T ss_pred EEEcChHHHHHHHHHHhCCCH
Confidence 899999988888888888664
No 321
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.78 E-value=35 Score=26.74 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=15.9
Q ss_pred ChhhHHHHHhhccEEEecCchHHH
Q 033044 25 FSSSIADHLSSASLVISHAGSGSI 48 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~~Ti 48 (128)
.+.++.++.++||++|+..|.--+
T Consensus 190 ~T~nl~~~~~~ADIvI~AvGk~~~ 213 (282)
T PRK14182 190 RTADLAGEVGRADILVAAIGKAEL 213 (282)
T ss_pred CCCCHHHHHhhCCEEEEecCCcCc
Confidence 345677777777777777775333
No 322
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=35.73 E-value=39 Score=25.77 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=22.2
Q ss_pred ccEEEecCchHHHHHHHHh-----CCCEEE-EeCC
Q 033044 36 ASLVISHAGSGSIFETLRL-----GKPLIV-VVNE 64 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l~~-----g~P~I~-vP~~ 64 (128)
+|++|+-||=||+.|++.. ..|.+. +|..
T Consensus 58 ~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 58 VDTVIAGGGDGTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred CCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 5899999999999997743 345554 7875
No 323
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=35.71 E-value=27 Score=23.50 Aligned_cols=18 Identities=39% Similarity=0.719 Sum_probs=14.1
Q ss_pred HHHHHhhccEEEecCchH
Q 033044 29 IADHLSSASLVISHAGSG 46 (128)
Q Consensus 29 ~~~~~~~adlvIthaG~~ 46 (128)
+.++.+.+|+||+-||.+
T Consensus 51 l~~~~~~~dliittGG~g 68 (135)
T smart00852 51 LREALERADLVITTGGTG 68 (135)
T ss_pred HHHHHhCCCEEEEcCCCC
Confidence 445556799999999976
No 324
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.70 E-value=1.9e+02 Score=24.35 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=26.5
Q ss_pred HHHHHhhcc----EEEecCchHH------HHHHHHhCCCEEEEe
Q 033044 29 IADHLSSAS----LVISHAGSGS------IFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~T------i~E~l~~g~P~I~vP 62 (128)
|++-++++. ++++|+|.|. +.+|..-+.|+|++.
T Consensus 57 mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 57 MADGYARSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred HHHHHHHhhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 666666554 7888888764 679999999999994
No 325
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=35.62 E-value=90 Score=23.79 Aligned_cols=41 Identities=20% Similarity=0.442 Sum_probs=27.7
Q ss_pred eChhhHHHHH-h--hccEEEecCchHH-----HHHHHHhCCCEEEEeCC
Q 033044 24 TFSSSIADHL-S--SASLVISHAGSGS-----IFETLRLGKPLIVVVNE 64 (128)
Q Consensus 24 ~f~~~~~~~~-~--~adlvIthaG~~T-----i~E~l~~g~P~I~vP~~ 64 (128)
+|..+++..| + ++|++||+-..++ +.-|..+|.|+|+|-+|
T Consensus 176 Pfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 224 (248)
T PRK08057 176 PFSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARP 224 (248)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 4555554443 3 5789999865442 33456789999999776
No 326
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=35.36 E-value=48 Score=26.90 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=21.4
Q ss_pred cEEEecCchHHHHHHH-------HhCCCEEEEeCC
Q 033044 37 SLVISHAGSGSIFETL-------RLGKPLIVVVNE 64 (128)
Q Consensus 37 dlvIthaG~~Ti~E~l-------~~g~P~I~vP~~ 64 (128)
|+||+=|| |++.++. .-|+|.|.||..
T Consensus 101 ~~IIalGG-G~v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 101 SYVIAIGG-GAVLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred cEEEEECC-hHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 49999998 5777655 238999999986
No 327
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=35.35 E-value=1.8e+02 Score=22.95 Aligned_cols=52 Identities=10% Similarity=0.146 Sum_probs=33.0
Q ss_pred HHHHHhCCCEEEEeCCCC------------C-----CchHHHHHHHHHhCCCEEEeChHHHHHHHHhcch
Q 033044 49 FETLRLGKPLIVVVNEDL------------M-----DNHQSELAEELADRKHLYCAHPQSLHQVIVGMDL 101 (128)
Q Consensus 49 ~E~l~~g~P~I~vP~~~~------------~-----~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~~l~~ 101 (128)
.+++..+||+|++--..+ + .+++.. -..|.+.|...+-+.++|.+.|.+..+
T Consensus 227 ~~aa~~~KPVV~lk~Grs~~~g~~~sHTGala~~~~G~~~~~-~a~~rq~Gvi~v~~~~el~~~~~~~~~ 295 (300)
T PLN00125 227 IKESGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDK-IKALREAGVTVVESPAKIGVAMLEVFK 295 (300)
T ss_pred HHHhcCCCCEEEEEecCCCCCCCCccchhhhhcCCCCCHHHH-HHHHHHCCCeEeCCHHHHHHHHHHHHH
Confidence 455555899888832211 1 122333 346777888888888888888887764
No 328
>PRK14071 6-phosphofructokinase; Provisional
Probab=35.29 E-value=1.2e+02 Score=24.51 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=21.0
Q ss_pred cCchHHHHHHHHhCCCEEEEeCC
Q 033044 42 HAGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 42 haG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
|+|+-+++-+++.|.-.|++|-.
T Consensus 187 ~~G~LAl~~~la~ga~~iliPE~ 209 (360)
T PRK14071 187 DAGHIALAAGIAGGADVILIPEI 209 (360)
T ss_pred CccHHHHHhHhhcCCCEEEECCC
Confidence 89999999999999889999875
No 329
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=35.26 E-value=1.6e+02 Score=26.43 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=27.9
Q ss_pred cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh
Q 033044 42 HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD 80 (128)
Q Consensus 42 haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~ 80 (128)
|||+.+++-+++.|.-.|++|-....+.-+....+.+.+
T Consensus 199 ~~G~LAl~aglA~gAd~ilIPE~p~~~~~~~~i~~~l~~ 237 (762)
T cd00764 199 HCGYLALVSGLATGADWIFIPERPPEDGWEDQMCRRLSE 237 (762)
T ss_pred CchHHHHHHHhccCCCEEEecCCCCchhHHHHHHHHHHH
Confidence 999999999999998899998753211114455555554
No 330
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=35.23 E-value=78 Score=22.36 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=36.1
Q ss_pred CcccEEEEeChhhHHH--HHhhccEEEecCchHH---------HHHHHHhCCCEEEEeCCCCCCchHHHHH
Q 033044 16 GLLAVDCFTFSSSIAD--HLSSASLVISHAGSGS---------IFETLRLGKPLIVVVNEDLMDNHQSELA 75 (128)
Q Consensus 16 ~~~~~~v~~f~~~~~~--~~~~adlvIthaG~~T---------i~E~l~~g~P~I~vP~~~~~~~~Q~~nA 75 (128)
.+..++++++...... .+...|.+|.-+|.++ +.+++..++|++.|-+ ++|.-+.
T Consensus 21 ~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~-----G~Qlla~ 86 (184)
T cd01743 21 LGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCL-----GHQAIAE 86 (184)
T ss_pred cCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECH-----hHHHHHH
Confidence 5677888888644222 2467888776655554 3344566899999987 4777544
No 331
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=35.09 E-value=63 Score=19.92 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=28.2
Q ss_pred hHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE-eCCCCCCchHHHHHHHHH
Q 033044 28 SIADHLSSASLVISHAGSGSIFETLRLGKPLIVV-VNEDLMDNHQSELAEELA 79 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v-P~~~~~~~~Q~~nA~~l~ 79 (128)
++...+..+|++||..-... ..++|.|.+ |+... .++...-+.+.
T Consensus 41 ~~~~~~~~~Dliist~~~~~-----~~~~p~i~v~~~l~~--~d~~~i~~~I~ 86 (89)
T cd05566 41 EVPSLLDDADLIVSTTKVPE-----DYGIPVINGLPFLTG--IGEDKVYEEIL 86 (89)
T ss_pred HhhcccCCCcEEEEcCCcCC-----CCCCCEEEEeecccc--CChHHHHHHHH
Confidence 34556789999999876532 447899888 66542 33444444443
No 332
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.82 E-value=47 Score=26.06 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=20.5
Q ss_pred ccEEE-EeChhhHHHHHhhccEEEecCchHHH
Q 033044 18 LAVDC-FTFSSSIADHLSSASLVISHAGSGSI 48 (128)
Q Consensus 18 ~~~~v-~~f~~~~~~~~~~adlvIthaG~~Ti 48 (128)
..+.+ ..+.+++.+..++||+||+-.|.--+
T Consensus 182 AtVtv~hs~t~~l~~~~~~ADIvV~AvG~p~~ 213 (285)
T PRK14191 182 ASVSVCHILTKDLSFYTQNADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEEeCCcHHHHHHHHhCCEEEEecCCCCc
Confidence 34444 34566788888888888887765333
No 333
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=34.67 E-value=41 Score=27.19 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=25.3
Q ss_pred EEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 22 CFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 22 v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
...++.++.++.++||+||+..|.--+...-...-=+++|
T Consensus 244 cHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVI 283 (345)
T PLN02897 244 VHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVI 283 (345)
T ss_pred EcCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 3355677888899999999888764444433333334444
No 334
>PRK07064 hypothetical protein; Provisional
Probab=34.60 E-value=1.6e+02 Score=24.62 Aligned_cols=34 Identities=26% Similarity=0.614 Sum_probs=25.4
Q ss_pred HHHHHhhc----cEEEecCchH------HHHHHHHhCCCEEEEe
Q 033044 29 IADHLSSA----SLVISHAGSG------SIFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~a----dlvIthaG~~------Ti~E~l~~g~P~I~vP 62 (128)
|++-++++ -++++|+|.| .+.+|..-+.|+|++.
T Consensus 56 ~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~ 99 (544)
T PRK07064 56 MADAHARVSGGLGVALTSTGTGAGNAAGALVEALTAGTPLLHIT 99 (544)
T ss_pred HHHHHHHhcCCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 55555544 3788888865 5678888999999994
No 335
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=34.54 E-value=36 Score=27.43 Aligned_cols=32 Identities=31% Similarity=0.555 Sum_probs=24.6
Q ss_pred CCccccCCCcccCCCCcccEEEEeChhhHHHHHhhccEEEecCchH
Q 033044 1 MGQGTYLPAESIGEDGLLAVDCFTFSSSIADHLSSASLVISHAGSG 46 (128)
Q Consensus 1 ~g~~~~~p~~~~~~~~~~~~~v~~f~~~~~~~~~~adlvIthaG~~ 46 (128)
+|+|..+|.. +.-+-+ ..+..+|++|+.+|..
T Consensus 171 fGng~~lPaG-------------pLRep~-~rl~~ad~ii~~g~~~ 202 (336)
T COG1663 171 FGNGFLLPAG-------------PLREPP-KRLKSADAIITNGGGS 202 (336)
T ss_pred CCCcccccCC-------------cccCCh-hhhhcCcEEEecCCCc
Confidence 5889999986 233334 8899999999999754
No 336
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=34.48 E-value=1.1e+02 Score=22.47 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=32.1
Q ss_pred hcc-EEEecCchHHHHHHHH----------------hCCCEEEEeCCC-CCCchHHHHHHHHH-hCCCEEE
Q 033044 35 SAS-LVISHAGSGSIFETLR----------------LGKPLIVVVNED-LMDNHQSELAEELA-DRKHLYC 86 (128)
Q Consensus 35 ~ad-lvIthaG~~Ti~E~l~----------------~g~P~I~vP~~~-~~~~~Q~~nA~~l~-~~g~~~~ 86 (128)
++| +||.=|-++|+..... .++|+|++|... .+-.|+ +|...|. ..|+-++
T Consensus 79 ~~D~mVIaPcTanTLAKiA~GiaDnlv~~aa~a~Lke~rPlvlaPamN~~m~~~~-~Ni~~L~~~~g~~~v 148 (187)
T TIGR02852 79 PLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATLRNNKPVVLAISTNDALGLNA-VNLMRLLNTKNIYFV 148 (187)
T ss_pred hhCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEECcCHHHHhCH-HHHHHHHHcCCEEEE
Confidence 455 5677777777764422 389999999873 122332 6677764 6677665
No 337
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=34.41 E-value=46 Score=26.50 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=13.7
Q ss_pred hhccEEEecCchHHHHHHH
Q 033044 34 SSASLVISHAGSGSIFETL 52 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l 52 (128)
.++|+||+=|| ||++++.
T Consensus 80 ~~~d~IIaiGG-GSviD~a 97 (370)
T cd08192 80 GGCDGVIAFGG-GSALDLA 97 (370)
T ss_pred cCCCEEEEeCC-chHHHHH
Confidence 45799999999 5776655
No 338
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=34.31 E-value=52 Score=22.63 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=27.8
Q ss_pred HHHHhhccEEEecCchHHHHHHHHh-CCCEEEEeCC
Q 033044 30 ADHLSSASLVISHAGSGSIFETLRL-GKPLIVVVNE 64 (128)
Q Consensus 30 ~~~~~~adlvIthaG~~Ti~E~l~~-g~P~I~vP~~ 64 (128)
++-+++||+||--+.- .+-..-.+ |+|++-+|..
T Consensus 51 ~edI~~Ad~VI~AaD~-~i~~~~ff~gk~vi~~~~~ 85 (122)
T COG1445 51 AEDIAAADVVILAADI-EVDLSRFFAGKPVIEVSTK 85 (122)
T ss_pred HHHHHhCCEEEEEecc-cccHhHhhcCCeEEEecHH
Confidence 5678999999999996 45556566 9999999875
No 339
>PRK07524 hypothetical protein; Provisional
Probab=34.12 E-value=1.6e+02 Score=24.66 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=24.9
Q ss_pred HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEe
Q 033044 29 IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP 62 (128)
|++-++++. ++++|+|.| .+.+|..-+.|+|++-
T Consensus 54 mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~ 97 (535)
T PRK07524 54 MADGYARVSGKPGVCFIITGPGMTNIATAMGQAYADSIPMLVIS 97 (535)
T ss_pred HHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 445454443 788888865 5678888999999993
No 340
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.07 E-value=40 Score=26.46 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=22.1
Q ss_pred eChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 24 TFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
..++++.+..++||+||+-.|.--+...-...-=.++|
T Consensus 189 s~T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVI 226 (284)
T PRK14170 189 SRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVI 226 (284)
T ss_pred CCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 34566778888888888877754443333333233444
No 341
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.06 E-value=39 Score=26.51 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=24.3
Q ss_pred EeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 23 FTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 23 ~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
...++++.+..++||+||+-.|.--+...-...-=.++|
T Consensus 186 hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVI 224 (287)
T PRK14173 186 HSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVV 224 (287)
T ss_pred CCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 344567888888888888887765444443333334444
No 342
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=34.02 E-value=52 Score=26.35 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=20.5
Q ss_pred EEEecCchHHHHHHHH-------hCCCEEEEeCC
Q 033044 38 LVISHAGSGSIFETLR-------LGKPLIVVVNE 64 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~-------~g~P~I~vP~~ 64 (128)
+||+=|| |++.++.. .|+|.|.||..
T Consensus 87 ~IIAvGG-Gsv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 87 VIVALGG-GVVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred EEEEECC-cHHHHHHHHHHHHhccCCCEEEecCc
Confidence 8999888 57777652 28999999985
No 343
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=33.86 E-value=62 Score=26.26 Aligned_cols=36 Identities=11% Similarity=0.267 Sum_probs=30.8
Q ss_pred HHHHHhh--ccEEEecCchHHHHHHHHh---CCCEEEEeCC
Q 033044 29 IADHLSS--ASLVISHAGSGSIFETLRL---GKPLIVVVNE 64 (128)
Q Consensus 29 ~~~~~~~--adlvIthaG~~Ti~E~l~~---g~P~I~vP~~ 64 (128)
..+.|.. +|+++.-+|=||.-..+.. .+|++.+|..
T Consensus 92 ~~r~~~~~gVdlIvfaGGDGTarDVa~av~~~vPvLGipaG 132 (355)
T COG3199 92 AVRRMVERGVDLIVFAGGDGTARDVAEAVGADVPVLGIPAG 132 (355)
T ss_pred HHHHHHhcCceEEEEeCCCccHHHHHhhccCCCceEeeccc
Confidence 4556666 9999999999998888777 9999999986
No 344
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=33.68 E-value=46 Score=28.17 Aligned_cols=34 Identities=26% Similarity=0.533 Sum_probs=27.2
Q ss_pred HHHHHhhcc----EEEecCchHH------HHHHHHhCCCEEEEe
Q 033044 29 IADHLSSAS----LVISHAGSGS------IFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~T------i~E~l~~g~P~I~vP 62 (128)
|++-++++. ++++++|.|. ++||..-+.|+|++.
T Consensus 64 ~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~ 107 (578)
T PRK06112 64 MADGYARVSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALV 107 (578)
T ss_pred HHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 555555443 8888999887 999999999999994
No 345
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=33.66 E-value=50 Score=26.52 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=21.6
Q ss_pred hccEEEecCchHHHHHHHHh------------------------CCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRL------------------------GKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~------------------------g~P~I~vP~~ 64 (128)
.+|+||+=|| ||++++..+ .+|+|.||..
T Consensus 84 ~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 84 GAQAVIAIGG-GSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred CCCEEEEeCC-ccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 5799999999 566665421 4799999985
No 346
>PLN03139 formate dehydrogenase; Provisional
Probab=33.64 E-value=92 Score=25.42 Aligned_cols=56 Identities=11% Similarity=0.224 Sum_probs=31.7
Q ss_pred hhhHHHHHhhccEEEecCchHHHHHH------H-HhCCCEEEE--eCCCCCCchHHHHHHHHHhCCC
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFET------L-RLGKPLIVV--VNEDLMDNHQSELAEELADRKH 83 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E~------l-~~g~P~I~v--P~~~~~~~~Q~~nA~~l~~~g~ 83 (128)
.+++++++++||+|+.|.-.+.-.+- + .++.-.++| -+...+ ++....+.|++..+
T Consensus 246 ~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iV--De~AL~~AL~sG~l 310 (386)
T PLN03139 246 EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIM--DTQAVADACSSGHI 310 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchh--hHHHHHHHHHcCCc
Confidence 44689999999999998874333222 2 222234444 222232 45566666666544
No 347
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=33.52 E-value=37 Score=25.37 Aligned_cols=20 Identities=20% Similarity=0.057 Sum_probs=17.0
Q ss_pred EEEecCchHHHHHHHHhCCC
Q 033044 38 LVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P 57 (128)
+||||+|...+.=+...|.|
T Consensus 165 liVsHG~vir~ll~~l~~~~ 184 (236)
T PTZ00123 165 LVAAHGNSLRALVKYLDKMS 184 (236)
T ss_pred EEEeCHHHHHHHHHHHhCCC
Confidence 89999998888877777766
No 348
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=33.36 E-value=29 Score=24.78 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=23.0
Q ss_pred HHHHHhhccEEEecCchHH-----HHHHH--HhCCCEEEEe
Q 033044 29 IADHLSSASLVISHAGSGS-----IFETL--RLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~adlvIthaG~~T-----i~E~l--~~g~P~I~vP 62 (128)
+.++...+|+||+-||.|. +.|++ ++|+|++..+
T Consensus 52 l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~ 92 (170)
T cd00885 52 LRRASERADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDE 92 (170)
T ss_pred HHHHHhCCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCH
Confidence 5555667899999999863 23444 3677766654
No 349
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=33.22 E-value=1.7e+02 Score=22.95 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=35.3
Q ss_pred HHHhhccEEEecCchHHHHHHHH----hCCCEEEEeCCCCCCchH-HHHHHHHHhCCCEEE
Q 033044 31 DHLSSASLVISHAGSGSIFETLR----LGKPLIVVVNEDLMDNHQ-SELAEELADRKHLYC 86 (128)
Q Consensus 31 ~~~~~adlvIthaG~~Ti~E~l~----~g~P~I~vP~~~~~~~~Q-~~nA~~l~~~g~~~~ 86 (128)
+++..-|.|+|||-.+|+...+. .|++.-++.. +..+..| ...|+.|.+.|+-..
T Consensus 116 ~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~-EsrP~~~G~~~a~~L~~~GI~vt 175 (310)
T PRK08535 116 KRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIAT-ETRPRNQGHITAKELAEYGIPVT 175 (310)
T ss_pred HHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEe-cCCchhhHHHHHHHHHHCCCCEE
Confidence 44566679999999988776553 5666433322 1222223 568999999998643
No 350
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=33.14 E-value=2.2e+02 Score=21.73 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=39.6
Q ss_pred hhhHHHHHhhccEEEecCchHHHHH----HHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe
Q 033044 26 SSSIADHLSSASLVISHAGSGSIFE----TLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA 87 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti~E----~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~ 87 (128)
.+++++++..+|+||-.++..+..| ++..|+++++.-.... .+-.+..+...+.|.-+.+
T Consensus 58 ~~~~eell~~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~gal--~~~~~L~~~A~~~g~~l~v 121 (271)
T PRK13302 58 VVPLDQLATHADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVGAL--LRNEDLIDLARQNGGQIIV 121 (271)
T ss_pred cCCHHHHhcCCCEEEECCCcHHHHHHHHHHHHcCCcEEEecchhH--HhHHHHHHHHHHcCCEEEE
Confidence 4557888899999999988776654 4577999887632211 1223455556667776654
No 351
>PRK01112 phosphoglyceromutase; Provisional
Probab=33.13 E-value=38 Score=25.27 Aligned_cols=22 Identities=14% Similarity=-0.141 Sum_probs=18.0
Q ss_pred cEEEecCchHHHHHHHHhCCCE
Q 033044 37 SLVISHAGSGSIFETLRLGKPL 58 (128)
Q Consensus 37 dlvIthaG~~Ti~E~l~~g~P~ 58 (128)
-+||||+|...+.-+...+.|.
T Consensus 176 ilVVsHg~vir~l~~~ll~~~~ 197 (228)
T PRK01112 176 VFVSAHGNSLRSLIMDLEKLSE 197 (228)
T ss_pred EEEEeCHHHHHHHHHHHhCCCH
Confidence 4888999998888888888654
No 352
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=33.09 E-value=54 Score=26.22 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=27.0
Q ss_pred hhhHHHHHhhcc-EEEecCchH--------------HHHHHHHhCCCEEEE
Q 033044 26 SSSIADHLSSAS-LVISHAGSG--------------SIFETLRLGKPLIVV 61 (128)
Q Consensus 26 ~~~~~~~~~~ad-lvIthaG~~--------------Ti~E~l~~g~P~I~v 61 (128)
++++++.+..|| ++|+||..| -+..|-..|||+|+-
T Consensus 230 v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~A 280 (348)
T PF00224_consen 230 VENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVA 280 (348)
T ss_dssp HHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEE
T ss_pred HhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeeh
Confidence 467899999999 678888765 345677889999884
No 353
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.08 E-value=42 Score=26.34 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=21.8
Q ss_pred ChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 25 FSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
.+.++.++.++||+||+..|.--+...-....=.++|
T Consensus 190 ~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVI 226 (287)
T PRK14181 190 QSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIV 226 (287)
T ss_pred CCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 4566778888888888777754443333333334444
No 354
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.80 E-value=43 Score=26.36 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=24.0
Q ss_pred eChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 24 TFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
..+.++.+..++||++|+..|.--+...-...-=.++|
T Consensus 193 s~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVI 230 (293)
T PRK14185 193 SRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVI 230 (293)
T ss_pred CCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 45677888889999888888765444333333333444
No 355
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.78 E-value=43 Score=26.23 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=16.9
Q ss_pred ChhhHHHHHhhccEEEecCchHHHHH
Q 033044 25 FSSSIADHLSSASLVISHAGSGSIFE 50 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~~Ti~E 50 (128)
.++++.+..++||++|+..|.--+..
T Consensus 193 ~T~~l~~~~k~ADIvV~AvGkp~~i~ 218 (284)
T PRK14193 193 GTRDLAAHTRRADIIVAAAGVAHLVT 218 (284)
T ss_pred CCCCHHHHHHhCCEEEEecCCcCccC
Confidence 34567777777777777776544433
No 356
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=32.78 E-value=84 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=34.7
Q ss_pred cEEEecC-----chHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC--CCE
Q 033044 37 SLVISHA-----GSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR--KHL 84 (128)
Q Consensus 37 dlvItha-----G~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~--g~~ 84 (128)
.+|+|+- |.+.+.=+...|+|+.++-..+.+++-...++++|.++ |++
T Consensus 236 gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilgmg 290 (437)
T PRK00771 236 GIIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMG 290 (437)
T ss_pred EEEEecccCCCcccHHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhCCC
Confidence 4666542 44567777789999999988877776667777777774 666
No 357
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=32.65 E-value=64 Score=22.78 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=22.1
Q ss_pred ChhhHHHHHhhccEEEecCchHHHHHHHHhCC
Q 033044 25 FSSSIADHLSSASLVISHAGSGSIFETLRLGK 56 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~ 56 (128)
|.++ -+++++||+||+--|+ .+.-++.+..
T Consensus 143 ~~eq-v~~~~~a~viig~hGs-~l~n~~F~~~ 172 (206)
T PF04577_consen 143 FEEQ-VKLFASAKVIIGPHGS-ALTNLLFMPP 172 (206)
T ss_pred HHHH-HHHhcCCCEEEecCch-HhheeeecCC
Confidence 3444 4789999999999997 4666666644
No 358
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.62 E-value=42 Score=26.48 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=23.4
Q ss_pred eChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 24 TFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
..+.++.++.++||+||+..|.--+...-...-=.++|
T Consensus 190 s~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVI 227 (297)
T PRK14186 190 SRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVV 227 (297)
T ss_pred CCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 44567888888888888877754444333333334444
No 359
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=32.51 E-value=2.1e+02 Score=22.30 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=36.3
Q ss_pred HHHHhhccEEEecCchHHHHHHHH----hCCCE-EEEeCCCCCCchH-HHHHHHHHhCCCEEE
Q 033044 30 ADHLSSASLVISHAGSGSIFETLR----LGKPL-IVVVNEDLMDNHQ-SELAEELADRKHLYC 86 (128)
Q Consensus 30 ~~~~~~adlvIthaG~~Ti~E~l~----~g~P~-I~vP~~~~~~~~Q-~~nA~~l~~~g~~~~ 86 (128)
.+++..-|.|+|||-.+|+...+. .|+.. |++. +..+..| ...|+.|.+.|+-..
T Consensus 104 ~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~--EsrP~~qG~~la~eL~~~GI~vt 164 (275)
T PRK08335 104 SELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILT--ESAPDYEGLALANELEFLGIEFE 164 (275)
T ss_pred HHHcCCCCEEEEECCcHHHHHHHHHHHHcCCceEEEEe--cCCCchhHHHHHHHHHHCCCCEE
Confidence 355667789999999999877763 56653 3332 1122334 356999999998644
No 360
>PRK10116 universal stress protein UspC; Provisional
Probab=32.05 E-value=1.4e+02 Score=19.51 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=20.2
Q ss_pred HHHHHh--hccEEEe-cCchHHHHHHH--------HhCCCEEEEeCC
Q 033044 29 IADHLS--SASLVIS-HAGSGSIFETL--------RLGKPLIVVVNE 64 (128)
Q Consensus 29 ~~~~~~--~adlvIt-haG~~Ti~E~l--------~~g~P~I~vP~~ 64 (128)
+.++.. .+|+||. +-|.+.+.... ..++|+++||.+
T Consensus 94 I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv~~~ 140 (142)
T PRK10116 94 ILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLT 140 (142)
T ss_pred HHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 444544 6676664 44433333322 357888888875
No 361
>PRK09375 quinolinate synthetase; Provisional
Probab=32.03 E-value=1.2e+02 Score=24.23 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=39.0
Q ss_pred ccEEEEeChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEeC
Q 033044 18 LAVDCFTFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVVN 63 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~ 63 (128)
++..+..|+..-.++=+.||++.|-+=+-.+.+++.-+..+|++|-
T Consensus 120 p~a~vVaYvNssaeVKA~aD~~cTSSnAl~iv~~~~~~~~IlF~PD 165 (319)
T PRK09375 120 PDATVVTYVNTSAAVKARADIVCTSSNAVKIVEALPQGKKILFLPD 165 (319)
T ss_pred CCCEEEEEeCCCHHHHHhCCeEEeCHHHHHHHhccCCCCeEEEeCc
Confidence 4677888887777888899999999999999987767888999985
No 362
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.93 E-value=46 Score=26.26 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=24.1
Q ss_pred eChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 24 TFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
..+.++.+..++||+||+..|.-.+...-...-=.++|
T Consensus 197 s~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVI 234 (297)
T PRK14168 197 TRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVI 234 (297)
T ss_pred CCCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 44567888899999999877765444433333334444
No 363
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=31.93 E-value=1.9e+02 Score=24.72 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=41.2
Q ss_pred HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEeCCC-----CCCc----hHHHHHHHHHhCCCEEEeCh
Q 033044 29 IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVVNED-----LMDN----HQSELAEELADRKHLYCAHP 89 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP~~~-----~~~~----~Q~~nA~~l~~~g~~~~~~~ 89 (128)
|++-++++. ++++|.|.| .+.+|..-++|+|+|.-.. ..+. +|....+.+.++-...+.++
T Consensus 57 ~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~ 136 (597)
T PRK08273 57 MAVAHAKFTGEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVP 136 (597)
T ss_pred HHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCH
Confidence 555565553 778887765 5678888999999994320 0111 34444444442222233467
Q ss_pred HHHHHHHHhc
Q 033044 90 QSLHQVIVGM 99 (128)
Q Consensus 90 ~~l~~~i~~l 99 (128)
+++.+.+.+.
T Consensus 137 ~~~~~~l~~A 146 (597)
T PRK08273 137 EQLRHLVDRA 146 (597)
T ss_pred HHHHHHHHHH
Confidence 7776666555
No 364
>PRK11269 glyoxylate carboligase; Provisional
Probab=31.71 E-value=3.2e+02 Score=23.21 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=41.8
Q ss_pred HHHHHhhcc-----EEEecCc------hHHHHHHHHhCCCEEEEeCC-----CCCCchHHHHHHHHHhCCCEE----EeC
Q 033044 29 IADHLSSAS-----LVISHAG------SGSIFETLRLGKPLIVVVNE-----DLMDNHQSELAEELADRKHLY----CAH 88 (128)
Q Consensus 29 ~~~~~~~ad-----lvIthaG------~~Ti~E~l~~g~P~I~vP~~-----~~~~~~Q~~nA~~l~~~g~~~----~~~ 88 (128)
|++-++++. +++++.| .+.+.+|..-+.|+|++.-. ...+..|...-..+.+. +.. +.+
T Consensus 57 mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~-itk~s~~v~~ 135 (591)
T PRK11269 57 MAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKP-VTKWAVTVRE 135 (591)
T ss_pred HHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhc-ceeEEEEcCC
Confidence 666666665 5677777 56789999999999999432 11223343222223322 221 136
Q ss_pred hHHHHHHHHhcc
Q 033044 89 PQSLHQVIVGMD 100 (128)
Q Consensus 89 ~~~l~~~i~~l~ 100 (128)
++++.+.|+++.
T Consensus 136 ~~~~~~~i~~A~ 147 (591)
T PRK11269 136 PALVPRVFQQAF 147 (591)
T ss_pred HHHHHHHHHHHH
Confidence 777777666653
No 365
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=31.66 E-value=50 Score=26.85 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=21.2
Q ss_pred ccEEEecCchHHHHHHH-------HhCCCEEEEeCC
Q 033044 36 ASLVISHAGSGSIFETL-------RLGKPLIVVVNE 64 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l-------~~g~P~I~vP~~ 64 (128)
.|+||+=|| |++.++. ..|+|.|.||..
T Consensus 112 ~d~IIaiGG-Gsv~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 112 HSYVLAIGG-GAVLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred CceEEEeCC-cHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 349999888 5777662 238999999986
No 366
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=31.49 E-value=2.5e+02 Score=21.91 Aligned_cols=74 Identities=18% Similarity=0.125 Sum_probs=52.9
Q ss_pred hhHHHHHh--hccEEEecCc---hHHHHHHHHhCCCEEE----EeCCC---------CCC---chHH-HHHHHHHhCCCE
Q 033044 27 SSIADHLS--SASLVISHAG---SGSIFETLRLGKPLIV----VVNED---------LMD---NHQS-ELAEELADRKHL 84 (128)
Q Consensus 27 ~~~~~~~~--~adlvIthaG---~~Ti~E~l~~g~P~I~----vP~~~---------~~~---~~Q~-~nA~~l~~~g~~ 84 (128)
.+=.++|+ .||.|=.-+| .-|+..+...|+|++. .|..- ..+ ..|. +.|+.+++.|+.
T Consensus 97 ~nA~r~~ke~gA~aVKlEGG~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~ale~AGaf 176 (268)
T COG0413 97 KNAARLMKEAGADAVKLEGGEEMAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAKALEEAGAF 176 (268)
T ss_pred HHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHcCCceEEEecCChhhhhccCCeeeecCCHHHHHHHHHHHHHHHhcCce
Confidence 34456676 3899999999 8889999999999874 35431 011 1222 488999999987
Q ss_pred E-E--eChHHHHHHHHhcc
Q 033044 85 Y-C--AHPQSLHQVIVGMD 100 (128)
Q Consensus 85 ~-~--~~~~~l~~~i~~l~ 100 (128)
. + .-|++|++.|.+-+
T Consensus 177 ~ivlE~Vp~~lA~~IT~~l 195 (268)
T COG0413 177 ALVLECVPAELAKEITEKL 195 (268)
T ss_pred EEEEeccHHHHHHHHHhcC
Confidence 3 3 37999999998764
No 367
>PRK12361 hypothetical protein; Provisional
Probab=31.44 E-value=84 Score=26.52 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=24.6
Q ss_pred hccEEEecCchHHHHHHHH----hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR----LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~----~g~P~I~vP~~ 64 (128)
..|+||.-||=||+.|++. .+.|+-++|..
T Consensus 297 ~~d~Viv~GGDGTl~ev~~~l~~~~~~lgiiP~G 330 (547)
T PRK12361 297 GADIVIACGGDGTVTEVASELVNTDITLGIIPLG 330 (547)
T ss_pred CCCEEEEECCCcHHHHHHHHHhcCCCCEEEecCC
Confidence 3589999999999999883 36777888976
No 368
>PTZ00066 pyruvate kinase; Provisional
Probab=31.42 E-value=76 Score=27.05 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=28.5
Q ss_pred hhhHHHHHhhcc-EEEecCchHH--------------HHHHHHhCCCEEE
Q 033044 26 SSSIADHLSSAS-LVISHAGSGS--------------IFETLRLGKPLIV 60 (128)
Q Consensus 26 ~~~~~~~~~~ad-lvIthaG~~T--------------i~E~l~~g~P~I~ 60 (128)
++++++.+..|| ++|+||=.|. +..|-.+|||+|+
T Consensus 264 v~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIv 313 (513)
T PTZ00066 264 LINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVIT 313 (513)
T ss_pred HHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEE
Confidence 467999999999 6788877664 5677889999997
No 369
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=31.40 E-value=2.5e+02 Score=21.75 Aligned_cols=59 Identities=27% Similarity=0.302 Sum_probs=43.8
Q ss_pred hhHHHHHhhccEEEecCchHHHHH----HHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 033044 27 SSIADHLSSASLVISHAGSGSIFE----TLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLY 85 (128)
Q Consensus 27 ~~~~~~~~~adlvIthaG~~Ti~E----~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~ 85 (128)
.+++++++..|++|=-|+.-.+-| ++..|++.|++-....++..=.+.-..+.+.|.+.
T Consensus 52 s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~r 114 (255)
T COG1712 52 SDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGAR 114 (255)
T ss_pred ccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcE
Confidence 347888899999999999988765 67899999999877655544344444466666653
No 370
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=31.35 E-value=1.8e+02 Score=20.10 Aligned_cols=59 Identities=25% Similarity=0.288 Sum_probs=34.4
Q ss_pred hHHHHHhhccEEEecCchHHHHHHHHhC--------CCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 033044 28 SIADHLSSASLVISHAGSGSIFETLRLG--------KPLIVVVNEDLMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~E~l~~g--------~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
+..++..+||+||+---.....+.+..+ ...++|-....-...=.++++.+.++|..++
T Consensus 50 s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 50 SPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp SHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred hhhhHhhcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence 4678888899888765555555555554 3456664433222333457888888886654
No 371
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=31.31 E-value=24 Score=25.49 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=18.1
Q ss_pred cEEEecCchHHHHHHH--HhCCCEEEEe
Q 033044 37 SLVISHAGSGSIFETL--RLGKPLIVVV 62 (128)
Q Consensus 37 dlvIthaG~~Ti~E~l--~~g~P~I~vP 62 (128)
|+||+|+|.|-.+=+- .=..|+|...
T Consensus 68 DvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 68 DVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 7999999998544332 2277877764
No 372
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.29 E-value=46 Score=26.08 Aligned_cols=25 Identities=8% Similarity=0.287 Sum_probs=17.3
Q ss_pred ChhhHHHHHhhccEEEecCchHHHH
Q 033044 25 FSSSIADHLSSASLVISHAGSGSIF 49 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~~Ti~ 49 (128)
.+.++.++.++||++|+-.|.--+.
T Consensus 192 ~T~~l~~~~~~ADIvIsAvGk~~~i 216 (284)
T PRK14177 192 KTQNLPSIVRQADIIVGAVGKPEFI 216 (284)
T ss_pred CCCCHHHHHhhCCEEEEeCCCcCcc
Confidence 4566777888888888777754433
No 373
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=31.21 E-value=52 Score=26.33 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=13.1
Q ss_pred hccEEEecCchHHHHHHH
Q 033044 35 SASLVISHAGSGSIFETL 52 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l 52 (128)
.+|+||+=|| ||++++.
T Consensus 81 ~~D~IIavGG-GSviD~A 97 (375)
T cd08179 81 EPDWIIALGG-GSPIDAA 97 (375)
T ss_pred CCCEEEEeCC-ccHHHHH
Confidence 6799999999 5666654
No 374
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=31.21 E-value=2.1e+02 Score=24.30 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=25.0
Q ss_pred HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEe
Q 033044 29 IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP 62 (128)
|++-++++. ++++|.|.| .+.+|..-+.|+|++.
T Consensus 53 ~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 53 AADGYARASGKVGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred HHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 555555443 788887754 5788899999999994
No 375
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=31.09 E-value=1.5e+02 Score=22.39 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=30.3
Q ss_pred CcccEEEEeC----hhhHHHHHhhccEEEecCchH-------HHHHHHHhCCCEEEE
Q 033044 16 GLLAVDCFTF----SSSIADHLSSASLVISHAGSG-------SIFETLRLGKPLIVV 61 (128)
Q Consensus 16 ~~~~~~v~~f----~~~~~~~~~~adlvIthaG~~-------Ti~E~l~~g~P~I~v 61 (128)
.++++..|+= .+.+.+.+.+||++|.=|=.. -+..+...|.|+|.|
T Consensus 149 lrP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~I 205 (242)
T PTZ00408 149 LRPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLEL 205 (242)
T ss_pred CCCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEE
Confidence 5566766655 235778899999888744332 224455678888877
No 376
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.92 E-value=48 Score=25.96 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=17.3
Q ss_pred eChhhHHHHHhhccEEEecCchHHH
Q 033044 24 TFSSSIADHLSSASLVISHAGSGSI 48 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~Ti 48 (128)
..++++.++.++||+||+..|.--+
T Consensus 188 s~T~~l~~~~~~ADIvI~AvG~p~~ 212 (282)
T PRK14169 188 SKTRNLKQLTKEADILVVAVGVPHF 212 (282)
T ss_pred CCCCCHHHHHhhCCEEEEccCCcCc
Confidence 4456777888888888877775433
No 377
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.85 E-value=59 Score=25.47 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=15.6
Q ss_pred eChhhHHHHHhhccEEEecCchH
Q 033044 24 TFSSSIADHLSSASLVISHAGSG 46 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~ 46 (128)
..+.++.+..++||+||+-.|.-
T Consensus 190 s~t~~l~~~~~~ADIvI~AvG~p 212 (284)
T PRK14190 190 SKTKNLAELTKQADILIVAVGKP 212 (284)
T ss_pred CCchhHHHHHHhCCEEEEecCCC
Confidence 34456777788888887776543
No 378
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=30.85 E-value=48 Score=26.19 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=17.0
Q ss_pred eChhhHHHHHhhccEEEecCchH
Q 033044 24 TFSSSIADHLSSASLVISHAGSG 46 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~ 46 (128)
..+.++.++.++||+||+..|.-
T Consensus 199 s~T~nl~~~~~~ADIvv~AvGk~ 221 (299)
T PLN02516 199 SRTPDPESIVREADIVIAAAGQA 221 (299)
T ss_pred CCCCCHHHHHhhCCEEEEcCCCc
Confidence 34567888888888888877763
No 379
>PRK14072 6-phosphofructokinase; Provisional
Probab=30.84 E-value=1.1e+02 Score=25.33 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=29.8
Q ss_pred cCchHHHHHHHH-----hCCCEEEEeCCCCCCchH--HHHHHHHHhCCCEEEe
Q 033044 42 HAGSGSIFETLR-----LGKPLIVVVNEDLMDNHQ--SELAEELADRKHLYCA 87 (128)
Q Consensus 42 haG~~Ti~E~l~-----~g~P~I~vP~~~~~~~~Q--~~nA~~l~~~g~~~~~ 87 (128)
|||..++.-+++ .|.-.|++|-.. .+-++ ....+.+.+++.++++
T Consensus 191 ~aG~LAl~a~lA~~~~~~gad~iliPE~~-~~~~~~~~~i~~~~~~~~~~ivv 242 (416)
T PRK14072 191 HAGWLAAAAALAKQNPDDAPHLIYLPERP-FDEEKFLADVRAIVKRYGYCVVV 242 (416)
T ss_pred chhHHHHHHhhccccCCCCccEEEccCCC-CCHHHHHHHHHHHHHhCCCeEEE
Confidence 899999999999 788899998642 12222 1234455556777554
No 380
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.76 E-value=76 Score=24.98 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=29.9
Q ss_pred cccEEEE-eChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 17 LLAVDCF-TFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 17 ~~~~~v~-~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
+..+.++ ....++.++.++||+||+--|.....+......=.++|
T Consensus 182 g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVI 227 (296)
T PRK14188 182 NATVTIAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVI 227 (296)
T ss_pred CCEEEEECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEE
Confidence 3455555 24556788888888888888887777766544334444
No 381
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=30.54 E-value=54 Score=26.47 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=12.4
Q ss_pred hccEEEecCchHHHHHHH
Q 033044 35 SASLVISHAGSGSIFETL 52 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l 52 (128)
++|+||+=|| ||++++.
T Consensus 78 ~~D~IIaiGG-GS~iD~A 94 (398)
T cd08178 78 KPDTIIALGG-GSPMDAA 94 (398)
T ss_pred CCCEEEEeCC-ccHHHHH
Confidence 5799999999 4555543
No 382
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=30.44 E-value=43 Score=24.91 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.7
Q ss_pred HHHHHhhccEEEecCchHHH
Q 033044 29 IADHLSSASLVISHAGSGSI 48 (128)
Q Consensus 29 ~~~~~~~adlvIthaG~~Ti 48 (128)
+.+++++||+||+..|.--.
T Consensus 120 l~~~~~~ADIVIsAvG~~~~ 139 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNY 139 (197)
T ss_pred HHHHhhhCCEEEEccCCCCC
Confidence 77899999999999886443
No 383
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=30.39 E-value=63 Score=26.75 Aligned_cols=90 Identities=12% Similarity=0.235 Sum_probs=56.4
Q ss_pred HhhccEEEecCchHHHHHHHHh---CCCEEEEeCCC--------------CCCchHHHHHHHHHhCCCE--EE------e
Q 033044 33 LSSASLVISHAGSGSIFETLRL---GKPLIVVVNED--------------LMDNHQSELAEELADRKHL--YC------A 87 (128)
Q Consensus 33 ~~~adlvIthaG~~Ti~E~l~~---g~P~I~vP~~~--------------~~~~~Q~~nA~~l~~~g~~--~~------~ 87 (128)
|...|++|--||+.-+|-|..+ |..++++-... -+.+. ....+++.+.+.. ++ .
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~-~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNS-EAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccc-ccHHHHHHhCCCcchHHHHHHHhC
Confidence 4567999999998888766654 55667763320 01122 2255556655422 11 2
Q ss_pred ChHHHHHHHHhcc-----hhcCCCCCC-CChHHHHHHHHHhc
Q 033044 88 HPQSLHQVIVGMD-----LKSLLPYQP-GDATPVAKLINRFL 123 (128)
Q Consensus 88 ~~~~l~~~i~~l~-----~~~~~~~~~-~~~~~i~~~i~~~~ 123 (128)
+++++++.++++- +..-+.|+. +.++.|.+.+...+
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~ 121 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKEL 121 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHH
Confidence 7888888887773 234566776 77888888887765
No 384
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=30.23 E-value=44 Score=25.25 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=17.0
Q ss_pred cEEEecCchHHHHHHHHhCCC
Q 033044 37 SLVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 37 dlvIthaG~~Ti~E~l~~g~P 57 (128)
-+||||+|...+.=+...|.|
T Consensus 176 vlvVsHg~vir~l~~~l~~l~ 196 (245)
T TIGR01258 176 VLIVAHGNSLRALVKHLEGIS 196 (245)
T ss_pred EEEEcChHHHHHHHHHHHCcC
Confidence 499999998888777777755
No 385
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=30.19 E-value=1.1e+02 Score=24.35 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=27.6
Q ss_pred HHHHHh--hccEEEecCchHHHHHHHHhCCCEEEEeCC
Q 033044 29 IADHLS--SASLVISHAGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 29 ~~~~~~--~adlvIthaG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
+-+++. +-|++||+++.-..-=+...|+|.|.+--.
T Consensus 75 l~~~~~~~~pDv~is~~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 75 LLKLIKKFKPDVAISFGSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred HHHHHHhhCCCEEEecCcHHHHHHHHHhCCCeEEEecC
Confidence 444455 578999999986666788999999998544
No 386
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.13 E-value=77 Score=25.08 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=31.4
Q ss_pred cccEEEE-eChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEEe
Q 033044 17 LLAVDCF-TFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVVV 62 (128)
Q Consensus 17 ~~~~~v~-~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP 62 (128)
+..+.++ ....++.++.++||+||+-.|..-..+.....--.++|=
T Consensus 183 gatVtv~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~ik~GaiVID 229 (301)
T PRK14194 183 HCSVTVVHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVID 229 (301)
T ss_pred CCEEEEECCCCCCHHHHHhcCCEEEEecCChhcccHhhccCCcEEEE
Confidence 3455555 345678889999999999888877777665544455553
No 387
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.01 E-value=49 Score=26.12 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=23.9
Q ss_pred eChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 24 TFSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
..++++.+..++||+||+..|--.+...-...-=.++|
T Consensus 193 s~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVI 230 (297)
T PRK14167 193 SRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVI 230 (297)
T ss_pred CCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 44567888888888888877765444443333334444
No 388
>PRK13462 acid phosphatase; Provisional
Probab=30.00 E-value=53 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=15.9
Q ss_pred EEEecCchHHHHHHHHhCCC
Q 033044 38 LVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P 57 (128)
+||||+|...+.=+..+|.|
T Consensus 143 liVsHg~vir~ll~~~l~~~ 162 (203)
T PRK13462 143 VFVSHGHFSRAVITRWVELP 162 (203)
T ss_pred EEEeCCHHHHHHHHHHhCCC
Confidence 89999998776666777765
No 389
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=29.93 E-value=51 Score=23.63 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=18.3
Q ss_pred HHHHHHhCCCEEEeChHHHHHHHHhcch
Q 033044 74 LAEELADRKHLYCAHPQSLHQVIVGMDL 101 (128)
Q Consensus 74 nA~~l~~~g~~~~~~~~~l~~~i~~l~~ 101 (128)
.+.+=+.+|.|+.+|+|++.+++.+...
T Consensus 104 ~~~Fe~~cGVGV~VT~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 104 VAEFEKACGVGVVVTPEQIEAAVEKYIE 131 (164)
T ss_dssp HHHHHHTTTTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEECHHHHHHHHHHHHH
Confidence 4444455799999999999999988865
No 390
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=29.76 E-value=1e+02 Score=23.24 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=30.9
Q ss_pred ChhhHHHHHh-hccEEEecCc--hHHHHHHHHhCCCEEEEeCC
Q 033044 25 FSSSIADHLS-SASLVISHAG--SGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 25 f~~~~~~~~~-~adlvIthaG--~~Ti~E~l~~g~P~I~vP~~ 64 (128)
..++++++++ +=|+||+..+ ...+.+.+..+.|++.+|..
T Consensus 104 ~~~n~E~i~~lkPDlIi~~~~~~~~~~~~~~~~~~pvv~~~~~ 146 (319)
T COG0614 104 TDPNLEKIVALKPDLIIASSSSQDDLIYKLLSLGAPVVVVDYG 146 (319)
T ss_pred CCCCHHHhhhcCCCEEEEecccchhHHHHHHhcCCCEEEECCc
Confidence 3445655543 4689999986 55689999999999999886
No 391
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=29.75 E-value=1.2e+02 Score=23.25 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=23.3
Q ss_pred hccEEEecCchHHHHHHHHh--------CCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRL--------GKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~--------g~P~I~vP~~ 64 (128)
..|+||.-||=||+.|++.. ..|+-++|..
T Consensus 52 ~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 52 GVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred CCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCC
Confidence 34799999999999998832 2367888975
No 392
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=29.68 E-value=2.5e+02 Score=23.85 Aligned_cols=55 Identities=22% Similarity=0.368 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCEEEEeCCCC-CCchHHHHHHHHHhC-CCEEE------eChHHHHHHHHhcc
Q 033044 46 GSIFETLRLGKPLIVVVNEDL-MDNHQSELAEELADR-KHLYC------AHPQSLHQVIVGMD 100 (128)
Q Consensus 46 ~Ti~E~l~~g~P~I~vP~~~~-~~~~Q~~nA~~l~~~-g~~~~------~~~~~l~~~i~~l~ 100 (128)
-++.|+-..|||.|++-+... -..+-...++.|+++ +..+. ++.+++...+++++
T Consensus 171 rvI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 171 RVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 478899999999988865422 123445678888776 55443 26677777777664
No 393
>PLN02834 3-dehydroquinate synthase
Probab=29.46 E-value=69 Score=26.49 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=21.0
Q ss_pred cEEEecCchHHHHHHHH-------hCCCEEEEeCC
Q 033044 37 SLVISHAGSGSIFETLR-------LGKPLIVVVNE 64 (128)
Q Consensus 37 dlvIthaG~~Ti~E~l~-------~g~P~I~vP~~ 64 (128)
|+||+=|| |++.++.- .|+|.|.||..
T Consensus 165 ~~VIAiGG-Gsv~D~ak~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 165 CTFVALGG-GVIGDMCGFAAASYQRGVNFVQIPTT 198 (433)
T ss_pred cEEEEECC-hHHHHHHHHHHHHhcCCCCEEEECCc
Confidence 39999888 57766552 38999999985
No 394
>PRK06739 pyruvate kinase; Validated
Probab=29.46 E-value=92 Score=25.18 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=27.0
Q ss_pred hhhHHHHHhhcc-EEEecCchH--------------HHHHHHHhCCCEEEE
Q 033044 26 SSSIADHLSSAS-LVISHAGSG--------------SIFETLRLGKPLIVV 61 (128)
Q Consensus 26 ~~~~~~~~~~ad-lvIthaG~~--------------Ti~E~l~~g~P~I~v 61 (128)
++++++.+..|| ++|+||=.| -+..|..+|||+|+-
T Consensus 220 v~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvA 270 (352)
T PRK06739 220 IENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITA 270 (352)
T ss_pred HHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 467889999999 667777654 356777889999854
No 395
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=29.33 E-value=1.5e+02 Score=21.14 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=32.2
Q ss_pred CcccEEEEeChhhHHHHHhhccEEEecCchH------HHHHHH---HhCCCEEEEeCCCCCCchHHH
Q 033044 16 GLLAVDCFTFSSSIADHLSSASLVISHAGSG------SIFETL---RLGKPLIVVVNEDLMDNHQSE 73 (128)
Q Consensus 16 ~~~~~~v~~f~~~~~~~~~~adlvIthaG~~------Ti~E~l---~~g~P~I~vP~~~~~~~~Q~~ 73 (128)
.+..++++.+.+.-.+-+...|.+|--+|.+ .+.+.+ ..++|++.|=+ ++|.-
T Consensus 24 ~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGICl-----G~Qll 85 (190)
T PRK06895 24 LGVPMQVVNVEDLDLDEVENFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVCL-----GHQTL 85 (190)
T ss_pred cCCcEEEEECCccChhHhccCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEcH-----HHHHH
Confidence 4566777776431134456788888666655 122222 34899999987 57853
No 396
>PRK05637 anthranilate synthase component II; Provisional
Probab=29.07 E-value=1.5e+02 Score=21.73 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=37.0
Q ss_pred CcccEEEEeChhhHHHHHh-hccEEEecCchHHHHHH------H---HhCCCEEEEeCCCCCCchHHHHH
Q 033044 16 GLLAVDCFTFSSSIADHLS-SASLVISHAGSGSIFET------L---RLGKPLIVVVNEDLMDNHQSELA 75 (128)
Q Consensus 16 ~~~~~~v~~f~~~~~~~~~-~adlvIthaG~~Ti~E~------l---~~g~P~I~vP~~~~~~~~Q~~nA 75 (128)
++..++++++.....++.+ .-|.+|--+|.++..++ + ..++|++.|=+ ++|.-..
T Consensus 24 ~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGICl-----G~Qlla~ 88 (208)
T PRK05637 24 AGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICL-----GFQALLE 88 (208)
T ss_pred CCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcH-----HHHHHHH
Confidence 4567888888544444433 34788888888887665 1 12699999987 5777544
No 397
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=29.01 E-value=1.6e+02 Score=20.95 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=36.7
Q ss_pred CcccEEEEeCh-hhHHHHHh-hccEEEecCchHHH---------HHHHHhCCCEEEEeCCCCCCchHHHHHH
Q 033044 16 GLLAVDCFTFS-SSIADHLS-SASLVISHAGSGSI---------FETLRLGKPLIVVVNEDLMDNHQSELAE 76 (128)
Q Consensus 16 ~~~~~~v~~f~-~~~~~~~~-~adlvIthaG~~Ti---------~E~l~~g~P~I~vP~~~~~~~~Q~~nA~ 76 (128)
.+..+.+++.. ..++++.+ .-|.+|--+|.++. .+.+..++|++-|-+ ++|.-+..
T Consensus 22 ~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~-----G~Qlla~~ 88 (191)
T PRK06774 22 LGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCL-----GHQALGQA 88 (191)
T ss_pred CCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECH-----HHHHHHHH
Confidence 35566777754 23444433 34788888888773 344466899999987 58886554
No 398
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=29.00 E-value=50 Score=24.95 Aligned_cols=21 Identities=14% Similarity=-0.001 Sum_probs=17.0
Q ss_pred EEEecCchHHHHHHHHhCCCE
Q 033044 38 LVISHAGSGSIFETLRLGKPL 58 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P~ 58 (128)
+||||+|...+.=+...+.|.
T Consensus 177 lvVtHggvir~l~~~ll~~~~ 197 (247)
T PRK14115 177 LIAAHGNSLRALVKYLDNISD 197 (247)
T ss_pred EEEeChHHHHHHHHHHhCCCH
Confidence 899999998888777777653
No 399
>PF12496 BNIP2: Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2; InterPro: IPR022181 This domain family is found in eukaryotes, and is typically between 119 and 133 amino acids in length. There is a conserved HGGY sequence motif. This family is Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2. It interacts with pro- and anti- apoptotic molecules in the cell.
Probab=28.99 E-value=24 Score=24.43 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=10.9
Q ss_pred HHHhhccEEEecCch
Q 033044 31 DHLSSASLVISHAGS 45 (128)
Q Consensus 31 ~~~~~adlvIthaG~ 45 (128)
.++.=-.=||||||+
T Consensus 109 kvIEPYkrViSHGGY 123 (127)
T PF12496_consen 109 KVIEPYKRVISHGGY 123 (127)
T ss_pred EecccceeeeccCCc
Confidence 445555579999997
No 400
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=28.91 E-value=2.1e+02 Score=20.15 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=29.8
Q ss_pred CcccEEEEeChhh--HHHHHhhc----cEEEecCchHH-----HHHHH-HhCCCEEEEeCC
Q 033044 16 GLLAVDCFTFSSS--IADHLSSA----SLVISHAGSGS-----IFETL-RLGKPLIVVVNE 64 (128)
Q Consensus 16 ~~~~~~v~~f~~~--~~~~~~~a----dlvIthaG~~T-----i~E~l-~~g~P~I~vP~~ 64 (128)
.+..+++++-..+ |-+++++| |.+|--+|+-| +.+|+ +.++|.|=|=..
T Consensus 40 ~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vEVHiS 100 (141)
T TIGR01088 40 LNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVEVHLS 100 (141)
T ss_pred cCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEEEEcC
Confidence 4556666665432 55555554 66777777666 44444 578898877443
No 401
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=28.90 E-value=66 Score=25.69 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=22.2
Q ss_pred hhccEEEecCchHHHHHHHHh------------------------CCCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLRL------------------------GKPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~~------------------------g~P~I~vP~~ 64 (128)
..+|+||+=|| ||++++... .+|.|.||..
T Consensus 82 ~~~d~IIaiGG-GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 135 (374)
T cd08189 82 NGCDAILAVGG-GSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTT 135 (374)
T ss_pred cCCCEEEEeCC-ccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECC
Confidence 35799999999 566665521 1699999986
No 402
>PRK07586 hypothetical protein; Validated
Probab=28.84 E-value=3.4e+02 Score=22.51 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHHHhhcc----EEEecCchHHHH------HHHHhCCCEEEEeCCC-----CCCchHHHHHHHHHhC--CCEE-EeChH
Q 033044 29 IADHLSSAS----LVISHAGSGSIF------ETLRLGKPLIVVVNED-----LMDNHQSELAEELADR--KHLY-CAHPQ 90 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~Ti~------E~l~~g~P~I~vP~~~-----~~~~~Q~~nA~~l~~~--g~~~-~~~~~ 90 (128)
|++-++++. ++++|.|.|.+. +|..-++|+|++.-.. ..+.+|...-..+.+. .+.. +.+++
T Consensus 54 mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~ 133 (514)
T PRK07586 54 AADGYARMAGKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATYHRKYDAPLTSDIEALARPVSGWVRRSESAA 133 (514)
T ss_pred HHHHHHHHHCCCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchhccCCCcccccchhhhhccccceeeecCCHH
Confidence 566666554 678888877544 6788999999995320 1123344333332221 1111 23677
Q ss_pred HHHHHHHhcc
Q 033044 91 SLHQVIVGMD 100 (128)
Q Consensus 91 ~l~~~i~~l~ 100 (128)
++.+.|.+..
T Consensus 134 ~~~~~i~~A~ 143 (514)
T PRK07586 134 DVAADAAAAV 143 (514)
T ss_pred HHHHHHHHHH
Confidence 7776666553
No 403
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.83 E-value=55 Score=25.57 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=17.0
Q ss_pred ChhhHHHHHhhccEEEecCchHHHH
Q 033044 25 FSSSIADHLSSASLVISHAGSGSIF 49 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~~Ti~ 49 (128)
.++++.++.++||+||+..|.--+.
T Consensus 191 ~T~~l~~~~~~ADIvIsAvGkp~~i 215 (278)
T PRK14172 191 KTKNLKEVCKKADILVVAIGRPKFI 215 (278)
T ss_pred CCCCHHHHHhhCCEEEEcCCCcCcc
Confidence 3556777888888888777754433
No 404
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=28.74 E-value=40 Score=23.37 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=10.6
Q ss_pred hccEEEecCchH
Q 033044 35 SASLVISHAGSG 46 (128)
Q Consensus 35 ~adlvIthaG~~ 46 (128)
.+|+||+-||.+
T Consensus 61 ~~DlVittGG~s 72 (152)
T cd00886 61 GVDLILTTGGTG 72 (152)
T ss_pred CCCEEEECCCcC
Confidence 699999999975
No 405
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=28.73 E-value=1.2e+02 Score=22.46 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=22.2
Q ss_pred hHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 033044 45 SGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLY 85 (128)
Q Consensus 45 ~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~ 85 (128)
..|+-.++..|+|+.++|... ++++..=...|-+.|+..
T Consensus 171 ~~ta~~A~~~gr~v~~vp~~~--~~~~~~G~~~Li~~GA~~ 209 (212)
T PF02481_consen 171 LHTARFALEQGRPVFAVPGPI--DDPNSEGNNELIKEGAKL 209 (212)
T ss_dssp HHHHHHHHHHT--EEE----T--T-GGGHHHHHHHHTT-EE
T ss_pred HHHHHHHHHcCCeEEEEeCCC--CCcccHHHHHHHHcCCEe
Confidence 346667889999999998763 355666677888888443
No 406
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=28.72 E-value=48 Score=25.15 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=15.5
Q ss_pred EEEecCchHHHHHHHHhCCC
Q 033044 38 LVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~~g~P 57 (128)
+||||+|...+.=+...|.|
T Consensus 179 liVsHggvir~l~~~~~~~~ 198 (249)
T PRK14120 179 LIAAHGNSLRALVKHLDGIS 198 (249)
T ss_pred EEEeCHHHHHHHHHHHhCCC
Confidence 78999998777766667755
No 407
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.63 E-value=1.6e+02 Score=18.79 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=28.1
Q ss_pred CcccEEEEeCh-hhHHHHHhhccEEEecCchHHHHHHH-----HhCCCEEEEeC
Q 033044 16 GLLAVDCFTFS-SSIADHLSSASLVISHAGSGSIFETL-----RLGKPLIVVVN 63 (128)
Q Consensus 16 ~~~~~~v~~f~-~~~~~~~~~adlvIthaG~~Ti~E~l-----~~g~P~I~vP~ 63 (128)
.+.++++.... .++.+....+|+|+.-+-.--..+-+ ..|+|+..+|.
T Consensus 30 ~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 30 YGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred CCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeCh
Confidence 34455555553 34666777888888876654322222 24678888854
No 408
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=28.26 E-value=2e+02 Score=21.21 Aligned_cols=45 Identities=31% Similarity=0.356 Sum_probs=33.9
Q ss_pred cEEEecCchHHHHHHHHhCC-------CEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 033044 37 SLVISHAGSGSIFETLRLGK-------PLIVVVNEDLMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 37 dlvIthaG~~Ti~E~l~~g~-------P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
.+||+--|+.++.+.+..+. ..|+-|. .++...=++|.++|+.+.
T Consensus 69 ~ivIAGMGG~lI~~ILe~~~~~~~~~~~lILqP~-----~~~~~LR~~L~~~gf~I~ 120 (205)
T PF04816_consen 69 TIVIAGMGGELIIEILEAGPEKLSSAKRLILQPN-----THAYELRRWLYENGFEII 120 (205)
T ss_dssp EEEEEEE-HHHHHHHHHHTGGGGTT--EEEEEES-----S-HHHHHHHHHHTTEEEE
T ss_pred EEEEecCCHHHHHHHHHhhHHHhccCCeEEEeCC-----CChHHHHHHHHHCCCEEE
Confidence 47888889999999998664 2566686 367888899999998864
No 409
>PRK15138 aldehyde reductase; Provisional
Probab=28.22 E-value=1.1e+02 Score=24.61 Aligned_cols=17 Identities=12% Similarity=0.425 Sum_probs=12.5
Q ss_pred hccEEEecCchHHHHHHH
Q 033044 35 SASLVISHAGSGSIFETL 52 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l 52 (128)
++|+||+=||. |++++.
T Consensus 85 ~~D~IIaiGGG-S~iD~A 101 (387)
T PRK15138 85 KITFLLAVGGG-SVLDGT 101 (387)
T ss_pred CCCEEEEeCCh-HHHHHH
Confidence 68999999994 555443
No 410
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.11 E-value=55 Score=25.72 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=18.1
Q ss_pred eChhhHHHHHhhccEEEecCchHHHH
Q 033044 24 TFSSSIADHLSSASLVISHAGSGSIF 49 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~Ti~ 49 (128)
..+.++.++.++||++|+..|.--+.
T Consensus 191 s~T~~L~~~~~~ADIvV~AvGkp~~i 216 (288)
T PRK14171 191 SKTHNLSSITSKADIVVAAIGSPLKL 216 (288)
T ss_pred CCCCCHHHHHhhCCEEEEccCCCCcc
Confidence 34567888888888888877754333
No 411
>PRK09982 universal stress protein UspD; Provisional
Probab=27.99 E-value=95 Score=20.78 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.5
Q ss_pred CCCEEEEe
Q 033044 55 GKPLIVVV 62 (128)
Q Consensus 55 g~P~I~vP 62 (128)
.+|++++|
T Consensus 131 ~~pVLvv~ 138 (142)
T PRK09982 131 SADLLIVP 138 (142)
T ss_pred CCCEEEec
Confidence 34444444
No 412
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=27.98 E-value=1.8e+02 Score=23.61 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=33.6
Q ss_pred HHHHhhccEEEecC--------chHHHH----HHHHhCCCEEEEeCCCCCCchHH-HH-HHHHHhCCCEEE
Q 033044 30 ADHLSSASLVISHA--------GSGSIF----ETLRLGKPLIVVVNEDLMDNHQS-EL-AEELADRKHLYC 86 (128)
Q Consensus 30 ~~~~~~adlvItha--------G~~Ti~----E~l~~g~P~I~vP~~~~~~~~Q~-~n-A~~l~~~g~~~~ 86 (128)
.+++..-+ |+||| |+||+. ++...|+..-++.. +..+..|- .. |..|.+.|+-..
T Consensus 155 ~~li~dg~-ILTHcnaG~LAt~~~gTal~vi~~A~~~gk~~~V~v~-EtRP~~qG~rlta~eL~~~GI~vt 223 (356)
T PRK08334 155 AEVLPEGN-VLTHCNAGSLATVHLGTVGAVLRVMHKDGTLKLLWVD-ETRPVLQGARLSAWEYHYDGIPLK 223 (356)
T ss_pred HhhcCCCC-EEEecCcchhhhcccchHHHHHHHHHHcCCeEEEEEC-CCCchhhHHHHHHHHHHHCCCCEE
Confidence 34455555 99999 667744 45567776554432 23344563 34 678999998644
No 413
>PRK01215 competence damage-inducible protein A; Provisional
Probab=27.93 E-value=58 Score=25.06 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=21.2
Q ss_pred HHHHHhhccEEEecCchHHH-----HHHH--HhCCCEEEE
Q 033044 29 IADHLSSASLVISHAGSGSI-----FETL--RLGKPLIVV 61 (128)
Q Consensus 29 ~~~~~~~adlvIthaG~~Ti-----~E~l--~~g~P~I~v 61 (128)
+.+++..+|+||+-||.|.. -|++ ++|+++++.
T Consensus 56 l~~a~~~~DlVIttGG~g~t~dD~t~eaia~~~g~~l~~~ 95 (264)
T PRK01215 56 FREAIDRADVVVSTGGLGPTYDDKTNEGFAKALGVELELN 95 (264)
T ss_pred HHHHhcCCCEEEEeCCCcCChhhhHHHHHHHHhCCCCCCC
Confidence 55566678999999998732 2333 346665544
No 414
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=27.88 E-value=1e+02 Score=20.32 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=6.6
Q ss_pred hCCCEEEEeCC
Q 033044 54 LGKPLIVVVNE 64 (128)
Q Consensus 54 ~g~P~I~vP~~ 64 (128)
...|+++||.+
T Consensus 130 a~~pVLvv~~~ 140 (144)
T PRK15118 130 VHVDMLIVPLR 140 (144)
T ss_pred CCCCEEEecCC
Confidence 45567777653
No 415
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=27.85 E-value=1e+02 Score=26.95 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=26.7
Q ss_pred hHHHHHhhccEEEecC-----chHHHHHHHHhCCCEEEEeCC
Q 033044 28 SIADHLSSASLVISHA-----GSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 28 ~~~~~~~~adlvItha-----G~~Ti~E~l~~g~P~I~vP~~ 64 (128)
+..+++..||+-|-=+ |+ |=.|+.++|+|.|.--..
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLs 502 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLS 502 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTB
T ss_pred CHHHHhccCceeeeccccccccC-ChHHHhhcCCceeeccch
Confidence 3689999999999887 87 899999999999988554
No 416
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=27.82 E-value=2.2e+02 Score=20.17 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=29.2
Q ss_pred CcccEEEEeChhh--HHHHHhh----ccEEEecCchHH-----HHHHH-HhCCCEEEEeCC
Q 033044 16 GLLAVDCFTFSSS--IADHLSS----ASLVISHAGSGS-----IFETL-RLGKPLIVVVNE 64 (128)
Q Consensus 16 ~~~~~~v~~f~~~--~~~~~~~----adlvIthaG~~T-----i~E~l-~~g~P~I~vP~~ 64 (128)
.+..+++++-..+ +-+++++ +|.+|--+|+-| +.+|+ +.++|.|=|=..
T Consensus 42 ~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VEVHiS 102 (146)
T PRK05395 42 LGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIEVHLS 102 (146)
T ss_pred cCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4556666665432 4445544 467777777666 34444 478888877443
No 417
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=27.73 E-value=41 Score=28.53 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=25.9
Q ss_pred HHHHhhccEEEe-----cCchHHHHHHHHhCCCEEEEeCCC
Q 033044 30 ADHLSSASLVIS-----HAGSGSIFETLRLGKPLIVVVNED 65 (128)
Q Consensus 30 ~~~~~~adlvIt-----haG~~Ti~E~l~~g~P~I~vP~~~ 65 (128)
-.+++++..+.. |=|- |..||+++|+|+|..-..+
T Consensus 360 yrl~adt~~v~~qPa~E~FGi-v~IEAMa~glPvvAt~~GG 399 (495)
T KOG0853|consen 360 YRLAADTKGVLYQPANEHFGI-VPIEAMACGLPVVATNNGG 399 (495)
T ss_pred HHHHHhcceEEecCCCCCccc-eeHHHHhcCCCEEEecCCC
Confidence 355666665554 4575 8999999999999997654
No 418
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.71 E-value=70 Score=25.10 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=17.7
Q ss_pred EeChhhHHHHHhhccEEEecCchHHHH
Q 033044 23 FTFSSSIADHLSSASLVISHAGSGSIF 49 (128)
Q Consensus 23 ~~f~~~~~~~~~~adlvIthaG~~Ti~ 49 (128)
..+++++.+..++||++|+-.|.--+.
T Consensus 190 hs~T~~l~~~~~~ADIvi~avG~p~~v 216 (285)
T PRK10792 190 HRFTKNLRHHVRNADLLVVAVGKPGFI 216 (285)
T ss_pred ECCCCCHHHHHhhCCEEEEcCCCcccc
Confidence 344566777788888887777654333
No 419
>PRK08617 acetolactate synthase; Reviewed
Probab=27.66 E-value=2.3e+02 Score=23.75 Aligned_cols=70 Identities=21% Similarity=0.387 Sum_probs=40.1
Q ss_pred HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEeC----CC-CCCchHH----HHHHHHHhCCCE-EEeC
Q 033044 29 IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVVN----ED-LMDNHQS----ELAEELADRKHL-YCAH 88 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP~----~~-~~~~~Q~----~nA~~l~~~g~~-~~~~ 88 (128)
|++-++++. ++++|+|.| .+.||..-+.|+|++.- .. ..+.+|. ...+.+.+ +. .+.+
T Consensus 57 ~A~gyar~tg~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk--~~~~v~~ 134 (552)
T PRK08617 57 MAAAIGRLTGKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRLKRTHQSMDNVALFRPITK--YSAEVQD 134 (552)
T ss_pred HHHhHhhhcCCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCcccccCCCCccccchhhhhhhhcc--eEEEeCC
Confidence 555555553 778887765 57888899999999943 11 1112333 33333222 22 2236
Q ss_pred hHHHHHHHHhcc
Q 033044 89 PQSLHQVIVGMD 100 (128)
Q Consensus 89 ~~~l~~~i~~l~ 100 (128)
++++.+.+.+..
T Consensus 135 ~~~~~~~i~~A~ 146 (552)
T PRK08617 135 PDNLSEVLANAF 146 (552)
T ss_pred HHHHHHHHHHHH
Confidence 777777776664
No 420
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=27.60 E-value=50 Score=22.23 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=34.3
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCchHHHHHH---HHhCCCEEEE
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAGSGSIFET---LRLGKPLIVV 61 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG~~Ti~E~---l~~g~P~I~v 61 (128)
+.=+....+..+|-..|++|-.+||-=|..|-.-+ +..|+|+|+=
T Consensus 33 g~iLv~~std~d~v~~~eKa~aiItee~glTshaAVvgl~LgvPvIvG 80 (111)
T COG3848 33 GVILVTPSTDADFVPALEKAAAIITEEGGLTSHAAVVGLELGVPVIVG 80 (111)
T ss_pred CcEEEeccCChhhHHHHHhhheeEeccCCccccceeeEeecCCcEEEE
Confidence 33455667777899999999999998877666554 4689998873
No 421
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=27.40 E-value=1.3e+02 Score=23.97 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=20.7
Q ss_pred cEEEecCchHHHHHHH-------HhCCCEEEEeCC
Q 033044 37 SLVISHAGSGSIFETL-------RLGKPLIVVVNE 64 (128)
Q Consensus 37 dlvIthaG~~Ti~E~l-------~~g~P~I~vP~~ 64 (128)
|+||+=|| |++..+. ..|+|.|.||..
T Consensus 90 d~IVaiGG-G~v~D~ak~~A~~~~rg~p~i~VPTT 123 (354)
T cd08199 90 EPVLAIGG-GVLTDVAGLAASLYRRGTPYVRIPTT 123 (354)
T ss_pred CEEEEECC-cHHHHHHHHHHHHhcCCCCEEEEcCc
Confidence 99999888 4555432 358999999985
No 422
>PRK12474 hypothetical protein; Provisional
Probab=27.30 E-value=3.3e+02 Score=22.69 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEeCC----C-CCCchHHHHHHHHHhCCCEE----EeCh
Q 033044 29 IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVVNE----D-LMDNHQSELAEELADRKHLY----CAHP 89 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP~~----~-~~~~~Q~~nA~~l~~~g~~~----~~~~ 89 (128)
|++-++++. ++++|.|.| .+.+|..-+.|+|++.-. . ..+.+|...-..+.+ .+.. +.++
T Consensus 58 mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~-~vtk~~~~v~~~ 136 (518)
T PRK12474 58 AADGYGRIAGKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHLQYDAPLTSDIDGFAR-PVSRWVHRSASA 136 (518)
T ss_pred HHHHHHHHhCCCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhhcCCCCccccCHHHhhh-cccceeeecCCH
Confidence 666666664 678888776 456777899999999432 1 111223332222332 2222 1367
Q ss_pred HHHHHHHHhcc
Q 033044 90 QSLHQVIVGMD 100 (128)
Q Consensus 90 ~~l~~~i~~l~ 100 (128)
+++.+.|++..
T Consensus 137 ~~~~~~i~rA~ 147 (518)
T PRK12474 137 GAVDSDVARAV 147 (518)
T ss_pred HHHHHHHHHHH
Confidence 77777776664
No 423
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=27.23 E-value=1.2e+02 Score=23.35 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=26.0
Q ss_pred HHHHH--hhccEEEec--------------CchHHHHHHHHhCCCEEEEeCC
Q 033044 29 IADHL--SSASLVISH--------------AGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 29 ~~~~~--~~adlvIth--------------aG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
+..+| ..-|+|||- |=-+..+|+..+|+|.|.+-..
T Consensus 75 l~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 75 LNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 56677 336777752 3345678999999999999665
No 424
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=26.94 E-value=2.3e+02 Score=22.20 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=31.2
Q ss_pred hhHHHHHhhccEEEecCchHHHHH------HHHhCCC-EEEE--eCCCCCCchHHHHHHHHHhCCC
Q 033044 27 SSIADHLSSASLVISHAGSGSIFE------TLRLGKP-LIVV--VNEDLMDNHQSELAEELADRKH 83 (128)
Q Consensus 27 ~~~~~~~~~adlvIthaG~~Ti~E------~l~~g~P-~I~v--P~~~~~~~~Q~~nA~~l~~~g~ 83 (128)
.+++++++.||+|+.|.-.+.-.+ .+..=+| .++| -+...+ ++....+.|.+..+
T Consensus 182 ~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vV--de~aL~~aL~~g~i 245 (312)
T PRK15469 182 EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHV--VEDDLLAALDSGKV 245 (312)
T ss_pred ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCcccc--CHHHHHHHHhcCCe
Confidence 357888999999998887544322 2222223 3333 333343 35566666666543
No 425
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.84 E-value=77 Score=24.88 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=15.5
Q ss_pred hhhHHHHHhhccEEEecCch
Q 033044 26 SSSIADHLSSASLVISHAGS 45 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~ 45 (128)
..++.+++++||+||+-.|.
T Consensus 195 t~~l~~~~~~ADIVI~AvG~ 214 (286)
T PRK14184 195 TPDLAEECREADFLFVAIGR 214 (286)
T ss_pred chhHHHHHHhCCEEEEecCC
Confidence 45688888888888887754
No 426
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=26.77 E-value=3e+02 Score=21.51 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=35.0
Q ss_pred HHHhhccEEEecCchHHHHHHHH----hCCCE-EEEeCCCCCCchH-HHHHHHHHhCCCEEE
Q 033044 31 DHLSSASLVISHAGSGSIFETLR----LGKPL-IVVVNEDLMDNHQ-SELAEELADRKHLYC 86 (128)
Q Consensus 31 ~~~~~adlvIthaG~~Ti~E~l~----~g~P~-I~vP~~~~~~~~Q-~~nA~~l~~~g~~~~ 86 (128)
+++..-|.|+|||-.+|+...+. .|+.. |++.- ..+..| ...|+.|.+.|+-..
T Consensus 111 ~~i~~g~~ILT~~~S~tv~~~l~~a~~~~~~f~V~v~E--srP~~~G~~~a~~L~~~gI~vt 170 (301)
T TIGR00511 111 KRIRDGDVVMTHCNSEAALSVIKTAFEQGKDIEVIATE--TRPRKQGHITAKELRDYGIPVT 170 (301)
T ss_pred HHcCCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEec--CCCcchHHHHHHHHHHCCCCEE
Confidence 44566689999999988776653 45654 33322 122233 568999999997643
No 427
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=26.74 E-value=95 Score=24.53 Aligned_cols=29 Identities=38% Similarity=0.559 Sum_probs=18.6
Q ss_pred CccccCCCcccCCCCcccEEEEeChhhHHHHHhhccEEEecCc
Q 033044 2 GQGTYLPAESIGEDGLLAVDCFTFSSSIADHLSSASLVISHAG 44 (128)
Q Consensus 2 g~~~~~p~~~~~~~~~~~~~v~~f~~~~~~~~~~adlvIthaG 44 (128)
|+|.++|... +-+. ..-+++||+||...+
T Consensus 152 gng~lLPaGp-------------LREp-~~~l~raD~vvv~~~ 180 (311)
T TIGR00682 152 GNGFLLPAGP-------------LREF-PKRLKSADAVIVNGG 180 (311)
T ss_pred CCCcccCCcC-------------CCCC-hhhhhhCCEEEEeCC
Confidence 6777777752 2222 355799998886555
No 428
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=26.64 E-value=1.6e+02 Score=23.39 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=37.9
Q ss_pred hHHHHHhhccEEEecCchH---HHHH-HHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe
Q 033044 28 SIADHLSSASLVISHAGSG---SIFE-TLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA 87 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~---Ti~E-~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~ 87 (128)
++.++++.+|+||.-+|.- .+++ |+..|++.|=..+ +...+....+...++|..++.
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~---~~~~~~~l~~~a~~~g~~~l~ 120 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYVDTSY---VTEEMLALDEEAKEAGVTALP 120 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS----HHHHHHHCHHHHHHTTSEEE-
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCeeccch---hHHHHHHHHHHHHhhCCEEEe
Confidence 3889999999999988753 3444 4577998877322 124566677777788988663
No 429
>PRK08266 hypothetical protein; Provisional
Probab=26.62 E-value=3e+02 Score=23.00 Aligned_cols=43 Identities=9% Similarity=0.257 Sum_probs=30.5
Q ss_pred EEEEeChhh-----HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEe
Q 033044 20 VDCFTFSSS-----IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVV 62 (128)
Q Consensus 20 ~~v~~f~~~-----~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP 62 (128)
++++.-.++ |++-++++. ++++|+|.| .+.||..-+.|+|++.
T Consensus 44 i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 44 IRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 455544443 566666553 788888865 6789999999999994
No 430
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=26.62 E-value=1.8e+02 Score=22.38 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=31.8
Q ss_pred ccEEEecCchHHHHHHHHhCCC--EEEEeCCCCCCchH-HHHHHHHHhCCCEEE
Q 033044 36 ASLVISHAGSGSIFETLRLGKP--LIVVVNEDLMDNHQ-SELAEELADRKHLYC 86 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l~~g~P--~I~vP~~~~~~~~Q-~~nA~~l~~~g~~~~ 86 (128)
-|+|+|++...++...+...++ .|+++-. .+..| ...|+.|.+.|.-..
T Consensus 87 ~dvILT~s~S~~v~~~l~~~~~~~~V~v~ES--rP~~eG~~~a~~L~~~GI~vt 138 (253)
T PRK06372 87 DSVIGTISSSQVLKAFISSSEKIKSVYILES--RPMLEGIDMAKLLVKSGIDVV 138 (253)
T ss_pred CCEEEEeCCcHHHHHHHHhcCCCCEEEEecC--CCchHHHHHHHHHHHCCCCEE
Confidence 4899999976666666644544 4555332 12333 579999999997644
No 431
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.59 E-value=79 Score=24.80 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=17.8
Q ss_pred hhhHHHHHhhccEEEecCchHHH
Q 033044 26 SSSIADHLSSASLVISHAGSGSI 48 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~~Ti 48 (128)
..++.+.+.+||+||+-.|.-.+
T Consensus 192 t~~l~~~~~~ADIVIsAvg~p~~ 214 (286)
T PRK14175 192 SKDMASYLKDADVIVSAVGKPGL 214 (286)
T ss_pred chhHHHHHhhCCEEEECCCCCcc
Confidence 46788888999999888887533
No 432
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.42 E-value=67 Score=25.20 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=17.3
Q ss_pred eChhhHHHHHhhccEEEecCchH
Q 033044 24 TFSSSIADHLSSASLVISHAGSG 46 (128)
Q Consensus 24 ~f~~~~~~~~~~adlvIthaG~~ 46 (128)
..++++.+.+++||+||+-.|.-
T Consensus 190 s~t~~l~~~~~~ADIVV~avG~~ 212 (285)
T PRK14189 190 SKTRDLAAHTRQADIVVAAVGKR 212 (285)
T ss_pred CCCCCHHHHhhhCCEEEEcCCCc
Confidence 34567888888899888888843
No 433
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=26.38 E-value=1.3e+02 Score=20.51 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=27.7
Q ss_pred hCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe
Q 033044 54 LGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA 87 (128)
Q Consensus 54 ~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~ 87 (128)
.+-++|++|....+...+...-+.+.+.|..++.
T Consensus 52 ~~y~~vi~P~~~~~~~~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 52 SGYKLVVLPDLYLLSDATAAALRAYVENGGTLVA 85 (154)
T ss_pred ccCCEEEECchhcCCHHHHHHHHHHHHCCCEEEE
Confidence 3788999999888777778888888888887664
No 434
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=26.26 E-value=85 Score=23.57 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=29.4
Q ss_pred CcccEEEEeC-h-----hhHHHHHhhccEEEecCch------HHHHHHHHhCCCEEEE
Q 033044 16 GLLAVDCFTF-S-----SSIADHLSSASLVISHAGS------GSIFETLRLGKPLIVV 61 (128)
Q Consensus 16 ~~~~~~v~~f-~-----~~~~~~~~~adlvIthaG~------~Ti~E~l~~g~P~I~v 61 (128)
+++++..|+= . ..+.+.+++||++|.=|=. .++.+....|.|+|+|
T Consensus 150 lrP~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~i 207 (235)
T cd01408 150 VKPDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLI 207 (235)
T ss_pred ccCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEE
Confidence 5567776663 1 2345668889988764433 3344566678888877
No 435
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=26.22 E-value=2.2e+02 Score=25.52 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=27.7
Q ss_pred cCchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHh
Q 033044 42 HAGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELAD 80 (128)
Q Consensus 42 haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~ 80 (128)
|||+.+++-+++.|.-.|++|-......-.....+.+.+
T Consensus 196 ~~G~LAl~aalA~gad~iliPE~~~~~~~~~~i~~~l~~ 234 (745)
T TIGR02478 196 HCGYLALMAAIATGADYVFIPERPPEEGWEDQLCHKLKR 234 (745)
T ss_pred cccHHHHHHHhccCCCEEEecCCCCCchHHHHHHHHHHH
Confidence 899999999999999999998753211114455555554
No 436
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=26.20 E-value=28 Score=21.13 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=18.9
Q ss_pred ccEEEecCchHHHHHHHHhCCC
Q 033044 36 ASLVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l~~g~P 57 (128)
.|.|++.=|.-|..|++..|++
T Consensus 24 ~dhvL~~LGgrT~~eAL~~G~d 45 (63)
T PF11248_consen 24 RDHVLSELGGRTAAEALEAGVD 45 (63)
T ss_pred HhcchhhcCCcCHHHHHHcCCC
Confidence 5788888887899999999976
No 437
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.16 E-value=1.9e+02 Score=18.81 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=31.5
Q ss_pred CcccEEEEeCh-hhHHHHHhhccEEEecCchHH----HHHHH-HhCCCEEEEeC
Q 033044 16 GLLAVDCFTFS-SSIADHLSSASLVISHAGSGS----IFETL-RLGKPLIVVVN 63 (128)
Q Consensus 16 ~~~~~~v~~f~-~~~~~~~~~adlvIthaG~~T----i~E~l-~~g~P~I~vP~ 63 (128)
.+.++++..+. .++...+..+|+++.-+=..- +.|.+ ..|+|+.++|.
T Consensus 27 ~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 27 RGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred CCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCH
Confidence 45566666664 457788899998887665443 33333 45889988863
No 438
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=26.15 E-value=1.4e+02 Score=20.62 Aligned_cols=29 Identities=7% Similarity=0.011 Sum_probs=20.3
Q ss_pred chHHHHHHHHHhCCCEEEeChHHHHHHHH
Q 033044 69 NHQSELAEELADRKHLYCAHPQSLHQVIV 97 (128)
Q Consensus 69 ~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~ 97 (128)
++....-..+.+.|+..+-+.++|.+..+
T Consensus 108 g~~~~~~a~~~~aGv~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 108 GDDAVYDAALRQAGVVRVDDLDELLDAAK 136 (138)
T ss_dssp --HHHHHHHHHHCTEEEESSHHHHHHHHC
T ss_pred CcHHHHHHHHHHcCceEECCHHHHHHHHH
Confidence 34455566788888888889888887653
No 439
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.10 E-value=79 Score=24.91 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=14.7
Q ss_pred hhhHHHHHhhccEEEecCch
Q 033044 26 SSSIADHLSSASLVISHAGS 45 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG~ 45 (128)
..++.+++++||+||+-.|.
T Consensus 197 t~~l~~~~~~ADIvI~Avg~ 216 (295)
T PRK14174 197 TKDIPSYTRQADILIAAIGK 216 (295)
T ss_pred chhHHHHHHhCCEEEEecCc
Confidence 35677888888888887754
No 440
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.07 E-value=74 Score=25.01 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=14.5
Q ss_pred ChhhHHHHHhhccEEEecCch
Q 033044 25 FSSSIADHLSSASLVISHAGS 45 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~ 45 (128)
++.++.+..++||++|+..|.
T Consensus 197 ~T~~l~~~~~~ADIvv~AvG~ 217 (287)
T PRK14176 197 FTDDLKKYTLDADILVVATGV 217 (287)
T ss_pred cCCCHHHHHhhCCEEEEccCC
Confidence 456677777888877765553
No 441
>PRK03202 6-phosphofructokinase; Provisional
Probab=25.78 E-value=3.4e+02 Score=21.52 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=35.8
Q ss_pred cCchHHHHHHHHhCCCEEEEeCCCCCCchHH--HHHHHHHh-CCCEEEe------ChHHHHHHHHhc
Q 033044 42 HAGSGSIFETLRLGKPLIVVVNEDLMDNHQS--ELAEELAD-RKHLYCA------HPQSLHQVIVGM 99 (128)
Q Consensus 42 haG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~--~nA~~l~~-~g~~~~~------~~~~l~~~i~~l 99 (128)
++|+.++.-+++.|.-.+++|-... +-++. ...+++.+ ++.++++ ..+.|.+.+++.
T Consensus 172 ~~G~LAl~~ala~~a~~iliPE~~~-~~~~l~~~i~~r~~~g~~~~vivvsEg~~~~~~l~~~i~~~ 237 (320)
T PRK03202 172 HAGDLALHAGIAGGAEVILIPEVPF-DIEELCAKIKKGRERGKKHAIIVVAEGVMPAEELAKEIEER 237 (320)
T ss_pred ChHHHHHHHHHhcCCCEEEeCCCCC-CHHHHHHHHHHHHHhcCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 8999999999999988999987532 22221 13334444 5666543 455666666654
No 442
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=25.54 E-value=87 Score=22.78 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=19.8
Q ss_pred HhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe
Q 033044 53 RLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA 87 (128)
Q Consensus 53 ~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~ 87 (128)
..+=++|++|....++......-+.+.+.|..+++
T Consensus 55 L~~Ykllv~P~~~~l~~~~~~~L~~yV~~GG~li~ 89 (207)
T PF08532_consen 55 LSGYKLLVLPSLYILSPEFAERLRAYVENGGTLIL 89 (207)
T ss_dssp -TT-SEEEES--SC--HHH---HHHHHT-SS-EEE
T ss_pred cccCcEEEEeeEEEEChHHHHHHHHHHHCCCEEEE
Confidence 45578999999988888877888888999888764
No 443
>PRK10867 signal recognition particle protein; Provisional
Probab=25.40 E-value=1.3e+02 Score=24.94 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=32.2
Q ss_pred ccEEEec------CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC--CCE
Q 033044 36 ASLVISH------AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR--KHL 84 (128)
Q Consensus 36 adlvIth------aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~--g~~ 84 (128)
..+|+|+ +|. .+.=+...|+|+.++...+.+++=+.++.+++.++ |++
T Consensus 243 ~giIlTKlD~~~rgG~-alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmg 298 (433)
T PRK10867 243 TGVILTKLDGDARGGA-ALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMG 298 (433)
T ss_pred CEEEEeCccCcccccH-HHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCC
Confidence 3466665 443 56666788999999998876665555666666664 555
No 444
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=25.34 E-value=2.3e+02 Score=19.99 Aligned_cols=58 Identities=16% Similarity=0.316 Sum_probs=31.3
Q ss_pred ecCchHHHHHHHH--hCCCEEEEeCCCCCCch-HHHHHHHHHhCCCEEE--eChHHHHHHHHh
Q 033044 41 SHAGSGSIFETLR--LGKPLIVVVNEDLMDNH-QSELAEELADRKHLYC--AHPQSLHQVIVG 98 (128)
Q Consensus 41 thaG~~Ti~E~l~--~g~P~I~vP~~~~~~~~-Q~~nA~~l~~~g~~~~--~~~~~l~~~i~~ 98 (128)
+.+|-+|.+|.++ .+.|.+.+-.....+.+ |.+......+++.... -.+.+|.+.|..
T Consensus 10 ~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~ 72 (170)
T PRK05800 10 ARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRA 72 (170)
T ss_pred CCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHh
Confidence 3678888888876 45677777543322221 3355555555544422 234455555544
No 445
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=25.26 E-value=68 Score=26.16 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=23.7
Q ss_pred ChhhHHHHHhhccEEEecCchHHHHHHHHhCCCEEEE
Q 033044 25 FSSSIADHLSSASLVISHAGSGSIFETLRLGKPLIVV 61 (128)
Q Consensus 25 f~~~~~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~v 61 (128)
.+.++.++.++||+||+..|.--+...-...-=+++|
T Consensus 264 ~T~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVI 300 (364)
T PLN02616 264 RTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVI 300 (364)
T ss_pred CCCCHHHHHhhCCEEEEcCCCcCcCCHHHcCCCCEEE
Confidence 3567888888888888888765444443333334444
No 446
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=25.16 E-value=2.2e+02 Score=24.08 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=25.3
Q ss_pred HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEe
Q 033044 29 IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP 62 (128)
|++-++++. ++++|.|.| .+.+|..-+.|+|++.
T Consensus 54 ~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 54 MADGFARVTGRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred HHHHHHHHhCCCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 555555443 688888876 4568999999999995
No 447
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=25.01 E-value=80 Score=22.30 Aligned_cols=12 Identities=17% Similarity=0.600 Sum_probs=10.3
Q ss_pred hccEEEecCchH
Q 033044 35 SASLVISHAGSG 46 (128)
Q Consensus 35 ~adlvIthaG~~ 46 (128)
.+|+||+-||.|
T Consensus 63 ~~DlVIttGGtg 74 (163)
T TIGR02667 63 DVQVILITGGTG 74 (163)
T ss_pred CCCEEEECCCcC
Confidence 589999999965
No 448
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=24.96 E-value=3.4e+02 Score=21.28 Aligned_cols=73 Identities=12% Similarity=0.276 Sum_probs=44.5
Q ss_pred eChhhHHHHHhhccEE--EecCchHHHHHHHHh-CCCEEEE--------eCCCCCCchHHHHHHHHHhCCCEEEe-----
Q 033044 24 TFSSSIADHLSSASLV--ISHAGSGSIFETLRL-GKPLIVV--------VNEDLMDNHQSELAEELADRKHLYCA----- 87 (128)
Q Consensus 24 ~f~~~~~~~~~~adlv--IthaG~~Ti~E~l~~-g~P~I~v--------P~~~~~~~~Q~~nA~~l~~~g~~~~~----- 87 (128)
+|=.++-+.|.+-.++ +||++--|.++++.. .+|+|+= +.+--..++| .+.+.++|..+-+
T Consensus 154 ~~G~~vv~~mn~lGmiiDvSH~s~~~~~dv~~~s~~PviaSHsn~ral~~h~RNltD~~---i~~ia~~GGvigi~~~~~ 230 (309)
T cd01301 154 PFGKELVREMNRLGIIIDLSHLSERTFWDVLDISNAPVIASHSNARALCDHPRNLTDAQ---LKAIAETGGVIGVNFYPA 230 (309)
T ss_pred HHHHHHHHHHHHcCCEEEcCCCCHHHHHHHHHhcCCCEEEeccChHHhcCCCCCCCHHH---HHHHHHcCCEEEEeeeHH
Confidence 3334555667777755 599999999999966 5786632 1111123343 4577778766431
Q ss_pred --------ChHHHHHHHHhc
Q 033044 88 --------HPQSLHQVIVGM 99 (128)
Q Consensus 88 --------~~~~l~~~i~~l 99 (128)
+.+++.+.|..+
T Consensus 231 fl~~~~~~~~~~~~~hi~~i 250 (309)
T cd01301 231 FLSPGADATLDDVVRHIDYI 250 (309)
T ss_pred HhCCCCCCCHHHHHHHHHHH
Confidence 456666666655
No 449
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=24.81 E-value=2.3e+02 Score=19.23 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCEEEEe----CCCC---CCchHHHHHHHHHhCCCEEE---eChHHHHHHHHhcch
Q 033044 47 SIFETLRLGKPLIVVV----NEDL---MDNHQSELAEELADRKHLYC---AHPQSLHQVIVGMDL 101 (128)
Q Consensus 47 Ti~E~l~~g~P~I~vP----~~~~---~~~~Q~~nA~~l~~~g~~~~---~~~~~l~~~i~~l~~ 101 (128)
.+.++...+.|+|++. .... ...+|......+.+. .... .+++++.+.+.+..+
T Consensus 82 ~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~ 145 (160)
T cd07034 82 ALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFE 145 (160)
T ss_pred HHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHH
Confidence 3456667889999993 2211 113455556666654 2222 267888888877754
No 450
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=24.79 E-value=97 Score=25.74 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=28.0
Q ss_pred CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC--CCE
Q 033044 43 AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR--KHL 84 (128)
Q Consensus 43 aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~--g~~ 84 (128)
+| +.+.=+...|+|+.++...+.+++-..+...++.++ |.+
T Consensus 255 gG-~aLs~~~~t~~PI~fig~Ge~v~Dle~f~p~~~~~rilgmg 297 (429)
T TIGR01425 255 GG-GALSAVAATKSPIIFIGTGEHIDDFEIFKTQPFISKLLGMG 297 (429)
T ss_pred cc-HHhhhHHHHCCCeEEEcCCCChhhcCcCChHHHHHHHhcCC
Confidence 44 467777889999999998876655455555555543 555
No 451
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=24.62 E-value=74 Score=26.62 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=17.3
Q ss_pred hHHHHHhhcc-------EEEecCchHHHHHHHHh
Q 033044 28 SIADHLSSAS-------LVISHAGSGSIFETLRL 54 (128)
Q Consensus 28 ~~~~~~~~ad-------lvIthaG~~Ti~E~l~~ 54 (128)
++.+.+..++ ++|+||| ||+-+..++
T Consensus 180 eIv~aI~~an~~~~~DvlIVaRGG-GSiEDLW~F 212 (440)
T COG1570 180 EIVEAIERANQRGDVDVLIVARGG-GSIEDLWAF 212 (440)
T ss_pred HHHHHHHHhhccCCCCEEEEecCc-chHHHHhcc
Confidence 4555555544 7788888 788877654
No 452
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=24.35 E-value=2.1e+02 Score=23.03 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=44.3
Q ss_pred HhhccEEEecCchHH-----HHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHH
Q 033044 33 LSSASLVISHAGSGS-----IFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQ 94 (128)
Q Consensus 33 ~~~adlvIthaG~~T-----i~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~ 94 (128)
++.-|-||-.++.+. +.-|-+.|...|-|-+. .++=.+..+.|.+.|+-.+++.++|.+
T Consensus 158 L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRd---R~~ieel~~~Lk~lGA~~ViTeeel~~ 221 (354)
T KOG0025|consen 158 LNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRD---RPNIEELKKQLKSLGATEVITEEELRD 221 (354)
T ss_pred cCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeec---CccHHHHHHHHHHcCCceEecHHHhcc
Confidence 445677776665443 34456899999999876 234567999999999999998888875
No 453
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=24.21 E-value=2.2e+02 Score=24.06 Aligned_cols=34 Identities=15% Similarity=0.329 Sum_probs=25.7
Q ss_pred HHHHHhhcc----EEEecCch------HHHHHHHHhCCCEEEEe
Q 033044 29 IADHLSSAS----LVISHAGS------GSIFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~------~Ti~E~l~~g~P~I~vP 62 (128)
|++-++++. +++++.|. +.+.||..-++|+|++.
T Consensus 56 ~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~ 99 (574)
T PRK09124 56 AAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIA 99 (574)
T ss_pred HHHHHHHhhCCcEEEEECCCCCHHHHHHHHHHHhhcCCCEEEEe
Confidence 666666654 67777766 46789999999999994
No 454
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.00 E-value=99 Score=24.18 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=14.6
Q ss_pred hhhHHHHHhhccEEEecCc
Q 033044 26 SSSIADHLSSASLVISHAG 44 (128)
Q Consensus 26 ~~~~~~~~~~adlvIthaG 44 (128)
..++.+.+++||+||+-.|
T Consensus 186 t~~L~~~~~~ADIvI~Avg 204 (279)
T PRK14178 186 TENLKAELRQADILVSAAG 204 (279)
T ss_pred hhHHHHHHhhCCEEEECCC
Confidence 4567788888888888776
No 455
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=23.97 E-value=1.2e+02 Score=23.89 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=23.0
Q ss_pred hccEEEecCchHHHHHHHH----hCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLR----LGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~----~g~P~I~vP~~ 64 (128)
.-|.+|.=+|-+|..-+.. +++|+|.||-.
T Consensus 91 ~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkT 124 (301)
T TIGR02482 91 GIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGT 124 (301)
T ss_pred CCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccc
Confidence 3457888888888865543 79999999975
No 456
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=23.96 E-value=97 Score=23.91 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=25.3
Q ss_pred hhccEEEecCchHHHHHHHHhC----CCEEEEeCC
Q 033044 34 SSASLVISHAGSGSIFETLRLG----KPLIVVVNE 64 (128)
Q Consensus 34 ~~adlvIthaG~~Ti~E~l~~g----~P~I~vP~~ 64 (128)
..+|++|+=||-||+..+...- +|++.|=..
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccCCCCEEEEeCC
Confidence 6799999999999999888654 588877553
No 457
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=23.94 E-value=1.7e+02 Score=17.28 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=25.6
Q ss_pred HhCCCE-EEEeCCCCCCchHHHHHHHHHhCCCEEEeChHHHHHHHH
Q 033044 53 RLGKPL-IVVVNEDLMDNHQSELAEELADRKHLYCAHPQSLHQVIV 97 (128)
Q Consensus 53 ~~g~P~-I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~~~~~l~~~i~ 97 (128)
..|.|+ |+||- .++...-+.|.+.|+...+..+++.+.|.
T Consensus 31 ~~~~~~dv~V~p-----~~~~~f~~~L~~~~i~~~v~i~dvq~~Id 71 (74)
T PF02244_consen 31 SVGRPVDVMVPP-----EKLEEFEELLKEHGIEYEVLIEDVQKLID 71 (74)
T ss_dssp STTSEEEEEEEG-----GGHHHHHHHHHHTT-EEEEEES-HHHHHH
T ss_pred CCCCeEEEEECH-----HHHHHHHHHHHHCCCcEEEEeHHHHHHHH
Confidence 456665 66664 46788888888889887665555555553
No 458
>PLN02470 acetolactate synthase
Probab=23.79 E-value=2.6e+02 Score=23.74 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=25.2
Q ss_pred HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEe
Q 033044 29 IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP 62 (128)
|++-++++. ++++|.|.| .+.+|..-+.|+|+|.
T Consensus 66 ~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 66 AAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 445454443 788888865 5778889999999994
No 459
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=23.79 E-value=27 Score=30.54 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=40.3
Q ss_pred hhHHHHHhhccEEEecC---c-hHHHHHHHHhCCC---EEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChHHHHHHHH
Q 033044 27 SSIADHLSSASLVISHA---G-SGSIFETLRLGKP---LIVVVNEDLMDNHQSELAEELADRKHLYC--AHPQSLHQVIV 97 (128)
Q Consensus 27 ~~~~~~~~~adlvItha---G-~~Ti~E~l~~g~P---~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~--~~~~~l~~~i~ 97 (128)
+++..+|+.||+++.-+ | ..++.|++++++| .+++.... .. +..+. ++.++ .+++.++++|.
T Consensus 353 ~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~--G~-----~~~l~--~~llv~P~d~~~la~ai~ 423 (726)
T PRK14501 353 EELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMA--GA-----AAELA--EALLVNPNDIEGIAAAIK 423 (726)
T ss_pred HHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEeccc--ch-----hHHhC--cCeEECCCCHHHHHHHHH
Confidence 46889999999998643 3 3578999999886 33333321 11 11121 22222 26788888887
Q ss_pred hcch
Q 033044 98 GMDL 101 (128)
Q Consensus 98 ~l~~ 101 (128)
+++.
T Consensus 424 ~~l~ 427 (726)
T PRK14501 424 RALE 427 (726)
T ss_pred HHHc
Confidence 7653
No 460
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=23.56 E-value=8.4 Score=23.42 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=19.6
Q ss_pred hHHHHHhhccEEEecCchHHHHHH
Q 033044 28 SIADHLSSASLVISHAGSGSIFET 51 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~E~ 51 (128)
.++.++..+||++.|+|-+|=+|-
T Consensus 17 ~lP~IIGGSDLi~h~~~knselee 40 (65)
T PF08599_consen 17 GLPHIIGGSDLIAHHAGKNSELEE 40 (65)
T ss_pred CCCeeecchhhhhccccccccHHH
Confidence 467789999999999998875553
No 461
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.56 E-value=2.9e+02 Score=23.43 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=25.8
Q ss_pred HHHHHhhcc----EEEecCchHH------HHHHHHhCCCEEEEe
Q 033044 29 IADHLSSAS----LVISHAGSGS------IFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~T------i~E~l~~g~P~I~vP 62 (128)
|++-++++. ++++|.|.|. +.+|..-+.|+|++.
T Consensus 57 mAdgyar~tg~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 57 MADGYARATGKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred HHHHHHHHhCCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 566666554 7888888764 678889999999994
No 462
>CHL00101 trpG anthranilate synthase component 2
Probab=23.24 E-value=2.7e+02 Score=19.83 Aligned_cols=55 Identities=16% Similarity=0.032 Sum_probs=35.5
Q ss_pred CcccEEEEeChh-hHHHHH-hhccEEEecCchHHH---------HHHHHhCCCEEEEeCCCCCCchHHHHH
Q 033044 16 GLLAVDCFTFSS-SIADHL-SSASLVISHAGSGSI---------FETLRLGKPLIVVVNEDLMDNHQSELA 75 (128)
Q Consensus 16 ~~~~~~v~~f~~-~~~~~~-~~adlvIthaG~~Ti---------~E~l~~g~P~I~vP~~~~~~~~Q~~nA 75 (128)
.+..+++.+... +..++. ..-|.+|--+|.++. .+.+..++|++.|-+ ++|.-+.
T Consensus 22 ~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGICl-----G~Qlla~ 87 (190)
T CHL00101 22 LNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCL-----GHQSIGY 87 (190)
T ss_pred cCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEch-----hHHHHHH
Confidence 456677777542 444443 346777777777663 344567899999987 4777543
No 463
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=23.24 E-value=59 Score=25.13 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=31.9
Q ss_pred CcccEEEEeChh--------hHHHHHhhccEEEecCchHHH-----HH--HHHhCCCEEEEe
Q 033044 16 GLLAVDCFTFSS--------SIADHLSSASLVISHAGSGSI-----FE--TLRLGKPLIVVV 62 (128)
Q Consensus 16 ~~~~~~v~~f~~--------~~~~~~~~adlvIthaG~~Ti-----~E--~l~~g~P~I~vP 62 (128)
.|..++-...+. .+..+..++|+||+-||-|-+ .| |-++|+|.+.-|
T Consensus 33 ~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~ 94 (255)
T COG1058 33 LGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHDDLTAEAVAKALGRPLVLDE 94 (255)
T ss_pred cCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCccHhHHHHHHHHhCCCcccCH
Confidence 455555444442 266678889999999998843 33 346888887764
No 464
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=23.15 E-value=1.9e+02 Score=21.36 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=29.9
Q ss_pred cccEEEEeChhhHHHHHhhccEEEecCchHH----------------HHHHHHhCCCEEEEeCCCCCCchHHH
Q 033044 17 LLAVDCFTFSSSIADHLSSASLVISHAGSGS----------------IFETLRLGKPLIVVVNEDLMDNHQSE 73 (128)
Q Consensus 17 ~~~~~v~~f~~~~~~~~~~adlvIthaG~~T----------------i~E~l~~g~P~I~vP~~~~~~~~Q~~ 73 (128)
+..+.+.+. .+.+..+|.+|.=| .++ +.+.+..++|++.|-. ++|..
T Consensus 25 g~~v~vv~~----~~~l~~~d~iIlPG-~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGICl-----G~Qll 87 (210)
T CHL00188 25 GQQPCIINS----ESELAQVHALVLPG-VGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICL-----GLHLL 87 (210)
T ss_pred CCcEEEEcC----HHHhhhCCEEEECC-CCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECH-----HHHHH
Confidence 344555543 23457799999744 232 4455567999999987 57775
No 465
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=23.08 E-value=1.1e+02 Score=24.90 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=26.9
Q ss_pred hHHHHHhhc--cEEEecCchHHHHHHHHhCCCEEEEe
Q 033044 28 SIADHLSSA--SLVISHAGSGSIFETLRLGKPLIVVV 62 (128)
Q Consensus 28 ~~~~~~~~a--dlvIthaG~~Ti~E~l~~g~P~I~vP 62 (128)
++.+++.+. |++|+++|..+.+.+...|.|.+-+.
T Consensus 364 e~~~~l~~~~pDl~i~~~~~~~~~~~~~~gip~~~~~ 400 (426)
T cd01972 364 QFYNLLKRVKPDFIIFRHGGLFPDATVYLGIPVVPLN 400 (426)
T ss_pred HHHHHHHHhCCCEEEEcCCCccHHHHHhcCCCEEecc
Confidence 355666655 89999888777888888999998773
No 466
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=23.05 E-value=2.8e+02 Score=19.53 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=29.6
Q ss_pred CcccEEEEeChhh--HHHHHhh----ccEEEecCchHH-----HHHHH-HhCCCEEEEeCC
Q 033044 16 GLLAVDCFTFSSS--IADHLSS----ASLVISHAGSGS-----IFETL-RLGKPLIVVVNE 64 (128)
Q Consensus 16 ~~~~~~v~~f~~~--~~~~~~~----adlvIthaG~~T-----i~E~l-~~g~P~I~vP~~ 64 (128)
++..+++++-..+ |-+++++ +|.+|--+|+-| +.+|+ +.++|.|=|=..
T Consensus 40 ~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VEVHiS 100 (140)
T cd00466 40 LGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIEVHIS 100 (140)
T ss_pred cCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4566666666432 4445544 477777777766 33444 568888777443
No 467
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.98 E-value=1.7e+02 Score=21.01 Aligned_cols=51 Identities=12% Similarity=0.046 Sum_probs=30.1
Q ss_pred CcccEEEEeChhhHHHHHhhccEEEecCchH--H-------------HHHHHHhCCCEEEEeCCCCCCchHHHHH
Q 033044 16 GLLAVDCFTFSSSIADHLSSASLVISHAGSG--S-------------IFETLRLGKPLIVVVNEDLMDNHQSELA 75 (128)
Q Consensus 16 ~~~~~~v~~f~~~~~~~~~~adlvIthaG~~--T-------------i~E~l~~g~P~I~vP~~~~~~~~Q~~nA 75 (128)
.+..+++.... +-+..+|.+|.=||.. + +.+++..|+|++.+-. ++|....
T Consensus 22 ~g~~v~~~~~~----~~l~~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~-----G~Qll~~ 87 (199)
T PRK13181 22 LGVEAVVSSDP----EEIAGADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICL-----GMQLLFE 87 (199)
T ss_pred CCCcEEEEcCh----HHhccCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECH-----hHHHhhh
Confidence 34555665432 3356799999744321 1 3333467999999976 4666433
No 468
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.70 E-value=40 Score=26.23 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=10.7
Q ss_pred EEEecCchHHHHHHHH
Q 033044 38 LVISHAGSGSIFETLR 53 (128)
Q Consensus 38 lvIthaG~~Ti~E~l~ 53 (128)
+||+||| ||..+..+
T Consensus 79 iii~RGG-Gs~eDL~~ 93 (319)
T PF02601_consen 79 IIIIRGG-GSIEDLWA 93 (319)
T ss_pred EEEecCC-CChHHhcc
Confidence 6789999 56666554
No 469
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=22.55 E-value=2.9e+02 Score=19.56 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=33.5
Q ss_pred hHHHHHhhcc--EEEecCch-----HHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 033044 28 SIADHLSSAS--LVISHAGS-----GSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYC 86 (128)
Q Consensus 28 ~~~~~~~~ad--lvIthaG~-----~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~ 86 (128)
....-...|| ++++++-. .|..-|..++||.++|-... ...-....+.+.+++..+.
T Consensus 56 RT~~NV~DsDgTlI~~~g~l~GGt~lT~~~a~~~~KP~l~i~~~~--~~~~~~v~~wl~~~~i~vL 119 (145)
T PF12694_consen 56 RTEWNVRDSDGTLIFTRGELTGGTALTVEFARKHGKPCLHIDLSI--PEAAAAVAEWLREHNIRVL 119 (145)
T ss_dssp HHHHHHHTSSEEEEEESSS--HHHHHHHHHHHHTT--EEEETS-H--HHHHHHHHHHHHHTT--EE
T ss_pred HHHhhhhhcCeEEEEecCCCCcHHHHHHHHHHHhCCCEEEEecCc--ccHHHHHHHHHHHCCceEE
Confidence 3455566677 88887643 25666778999999993321 1234557777888887755
No 470
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=22.50 E-value=6.8 Score=19.36 Aligned_cols=16 Identities=38% Similarity=0.738 Sum_probs=10.8
Q ss_pred chHHHHHHHHhCCCEE
Q 033044 44 GSGSIFETLRLGKPLI 59 (128)
Q Consensus 44 G~~Ti~E~l~~g~P~I 59 (128)
|.|++...++.|.|.+
T Consensus 1 gIGa~Lkvla~~LP~l 16 (26)
T PF01372_consen 1 GIGAILKVLATGLPTL 16 (26)
T ss_dssp -HHHHHHHHHTHHHHH
T ss_pred ChhHHHHHHHhcChHH
Confidence 5577777777777754
No 471
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=22.36 E-value=2.9e+02 Score=19.55 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=29.2
Q ss_pred CcccEEEEeChhh--HHHHHh----hccEEEecCchHH-----HHHHH-HhCCCEEEEeCC
Q 033044 16 GLLAVDCFTFSSS--IADHLS----SASLVISHAGSGS-----IFETL-RLGKPLIVVVNE 64 (128)
Q Consensus 16 ~~~~~~v~~f~~~--~~~~~~----~adlvIthaG~~T-----i~E~l-~~g~P~I~vP~~ 64 (128)
.+..+++++-..+ |-++++ .+|.+|--+|+-| +.+|+ +.++|.|=|=..
T Consensus 42 ~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VEVHiS 102 (146)
T PRK13015 42 LGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIEVHIS 102 (146)
T ss_pred cCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEEEEcC
Confidence 4556666665432 444444 4577777777766 34444 578888877443
No 472
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=22.29 E-value=2.2e+02 Score=18.09 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=20.5
Q ss_pred hHHHHHhhccEEEecCchHH----HHH-HHHhCCCEEEEeC
Q 033044 28 SIADHLSSASLVISHAGSGS----IFE-TLRLGKPLIVVVN 63 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~T----i~E-~l~~g~P~I~vP~ 63 (128)
++...+..+|++++-+=..- +.| +...++|+.++|.
T Consensus 39 ~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 39 ELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred HHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcCh
Confidence 35566677777777654433 222 2235677777764
No 473
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=22.10 E-value=2.1e+02 Score=22.71 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=35.5
Q ss_pred HHHhhccEEEecCchHHHHHHHHhCCCE-----EEEeCCCCCCchH-HHHHHHHHhCCCE
Q 033044 31 DHLSSASLVISHAGSGSIFETLRLGKPL-----IVVVNEDLMDNHQ-SELAEELADRKHL 84 (128)
Q Consensus 31 ~~~~~adlvIthaG~~Ti~E~l~~g~P~-----I~vP~~~~~~~~Q-~~nA~~l~~~g~~ 84 (128)
+.+...|.|+||+=..|+.|.+..-++- |+| . +..+..| ...|+.|.+.|.-
T Consensus 115 ~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~V-t-ESRP~~eG~~~ak~L~~~gI~ 172 (301)
T COG1184 115 ERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVIV-T-ESRPRGEGRIMAKELRQSGIP 172 (301)
T ss_pred hhccCCCEEEEecCcHHHHHHHHHhhhcCCceEEEE-E-cCCCcchHHHHHHHHHHcCCc
Confidence 4567788999999999999988654433 222 1 1122334 4689999999965
No 474
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=21.95 E-value=3.4e+02 Score=22.14 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHhhcc-EEEecCchHHHHHH-------------HHhCCCEEEEeCCC---CCCchHHHHHHHHHhCCCEEEe-------
Q 033044 32 HLSSAS-LVISHAGSGSIFET-------------LRLGKPLIVVVNED---LMDNHQSELAEELADRKHLYCA------- 87 (128)
Q Consensus 32 ~~~~ad-lvIthaG~~Ti~E~-------------l~~g~P~I~vP~~~---~~~~~Q~~nA~~l~~~g~~~~~------- 87 (128)
+-.+|| ++|.=|-++|+... +++-+|++++|... +...--.+|...|.+.|+.++-
T Consensus 75 l~~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~vv~P~~g~~a 154 (390)
T TIGR00521 75 LAKWADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIFIEPDSGLLA 154 (390)
T ss_pred cccccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEEECCCCcccc
Confidence 345677 55666677766543 23449999999842 1112335688999999887651
Q ss_pred ----------ChHHHHHHHHhcc
Q 033044 88 ----------HPQSLHQVIVGMD 100 (128)
Q Consensus 88 ----------~~~~l~~~i~~l~ 100 (128)
+++++.+.+.+.+
T Consensus 155 c~~~g~g~~~~~~~i~~~v~~~~ 177 (390)
T TIGR00521 155 CGDEGKGRLAEPETIVKAAEREF 177 (390)
T ss_pred cccccCCCCCCHHHHHHHHHHHH
Confidence 5677766666554
No 475
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=21.69 E-value=2.3e+02 Score=22.28 Aligned_cols=41 Identities=10% Similarity=0.124 Sum_probs=25.2
Q ss_pred CCCchHHH----HHHHHHhCCCEEEe-----------C-hHHHHHHHHhcchhcCCC
Q 033044 66 LMDNHQSE----LAEELADRKHLYCA-----------H-PQSLHQVIVGMDLKSLLP 106 (128)
Q Consensus 66 ~~~~~Q~~----nA~~l~~~g~~~~~-----------~-~~~l~~~i~~l~~~~~~~ 106 (128)
..+.+|.. ||++|.+.|..+++ . ...++..++.|.++.++|
T Consensus 234 vaqpdq~RivaLNA~~FLk~gGhfvisikancidstv~ae~vFa~Ev~klqee~lkP 290 (317)
T KOG1596|consen 234 VAQPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFAAEVKKLQEEQLKP 290 (317)
T ss_pred CCCchhhhhhhhhhhhhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHhccCc
Confidence 34567764 89999999876542 1 234555666665554443
No 476
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=21.56 E-value=3.3e+02 Score=19.93 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=37.0
Q ss_pred CcccEEEEeChh----hHHHHHhhccEEEecCchHHH----------HHHHHhCCCEEEEeCCCCCCchHHHHHHH
Q 033044 16 GLLAVDCFTFSS----SIADHLSSASLVISHAGSGSI----------FETLRLGKPLIVVVNEDLMDNHQSELAEE 77 (128)
Q Consensus 16 ~~~~~~v~~f~~----~~~~~~~~adlvIthaG~~Ti----------~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~ 77 (128)
++..+.++++.. +..+++...|.+|--+|.++. -+++..++|++.|-+ ++|.-+...
T Consensus 23 ~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~-----G~Qlla~a~ 93 (214)
T PRK07765 23 LGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCL-----GHQAIGVAF 93 (214)
T ss_pred cCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEcc-----CHHHHHHHh
Confidence 466777777652 234445678888777776433 334456899999987 478765543
No 477
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=21.44 E-value=95 Score=20.73 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=16.2
Q ss_pred ccEEEecCchHHHHHHHHhCCC
Q 033044 36 ASLVISHAGSGSIFETLRLGKP 57 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l~~g~P 57 (128)
.-+||||+|.-...=....|.|
T Consensus 101 ~iliV~H~~~i~~~~~~l~~~~ 122 (153)
T cd07067 101 NVLIVSHGGVLRALLAYLLGLS 122 (153)
T ss_pred eEEEEeChHHHHHHHHHHhCCC
Confidence 3489999998776666666655
No 478
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=21.43 E-value=1.8e+02 Score=24.67 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=25.2
Q ss_pred hHHHHHhhccEEEecCchHHHH--HHHHhCCC-EEEEeC
Q 033044 28 SIADHLSSASLVISHAGSGSIF--ETLRLGKP-LIVVVN 63 (128)
Q Consensus 28 ~~~~~~~~adlvIthaG~~Ti~--E~l~~g~P-~I~vP~ 63 (128)
.++++++.||+||+|.|.--+. +.+..=+| .+++-.
T Consensus 302 ~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 302 TLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred cHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEc
Confidence 4788999999999999864443 45555455 455544
No 479
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.38 E-value=3e+02 Score=19.35 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=47.7
Q ss_pred HHHhhccEEEecCchHHHHHHHHhCCCE-EEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChHHHHHHHHhcchhc---
Q 033044 31 DHLSSASLVISHAGSGSIFETLRLGKPL-IVVVNEDLMDNHQSELAEELADRKHLYCA---HPQSLHQVIVGMDLKS--- 103 (128)
Q Consensus 31 ~~~~~adlvIthaG~~Ti~E~l~~g~P~-I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~---~~~~l~~~i~~l~~~~--- 103 (128)
+.+++||++++=+- +.++=+-..|.|. --++-. +=-...-+...+.+.-+.+ +++.+.++...+.+.-
T Consensus 1 ~~~~~adlv~~DG~-~i~~~~~~~g~~~~~rv~g~----dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l 75 (172)
T PF03808_consen 1 EALNSADLVLPDGM-PIVWAARLLGRPLPERVTGS----DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGL 75 (172)
T ss_pred ChHHhCCEEecCCH-HHHHHHHHcCCCCCcccCHH----HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCe
Confidence 35788999888765 4555555668877 333322 1122344455666666443 6666666666664421
Q ss_pred -----CCC-CCCCChHHHHHHHHH
Q 033044 104 -----LLP-YQPGDATPVAKLINR 121 (128)
Q Consensus 104 -----~~~-~~~~~~~~i~~~i~~ 121 (128)
..+ +.+...+.+++.|.+
T Consensus 76 ~ivg~~~g~f~~~~~~~i~~~I~~ 99 (172)
T PF03808_consen 76 RIVGYHHGYFDEEEEEAIINRINA 99 (172)
T ss_pred EEEEecCCCCChhhHHHHHHHHHH
Confidence 122 223445666666654
No 480
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=21.34 E-value=1.2e+02 Score=25.44 Aligned_cols=34 Identities=26% Similarity=0.576 Sum_probs=26.3
Q ss_pred HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEe
Q 033044 29 IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP 62 (128)
|++-++++. ++++|+|.| .+.||..-+.|+|++.
T Consensus 63 ~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~ 106 (530)
T PRK07092 63 MADGYAQATGNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITA 106 (530)
T ss_pred HHHHHHHHhCCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 555555544 888888877 7889999999999993
No 481
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=21.28 E-value=80 Score=19.99 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=27.5
Q ss_pred HHHHhhccEEEecCchHHHHHHHHhCCCEEEEeCC
Q 033044 30 ADHLSSASLVISHAGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 30 ~~~~~~adlvIthaG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
.+-++.||+||--+.....-+.-..|+|++.++..
T Consensus 33 ~~~i~~Ad~VIia~d~~i~~~~rf~gk~v~~~s~~ 67 (88)
T PRK10474 33 AEDVASADMVILTKDIGIKFEERFAGKTIVRVNIS 67 (88)
T ss_pred HHHHHhCCEEEEEecCCCcchhccCCCceEEecHH
Confidence 36789999999888765335677899999999875
No 482
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=21.27 E-value=1.6e+02 Score=24.41 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=29.4
Q ss_pred cEEEec------CchHHHHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhC--CCE
Q 033044 37 SLVISH------AGSGSIFETLRLGKPLIVVVNEDLMDNHQSELAEELADR--KHL 84 (128)
Q Consensus 37 dlvIth------aG~~Ti~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~--g~~ 84 (128)
.+|+|+ +|. .+.-+...|+|+.++...+.+++=+.++.+++.++ |.+
T Consensus 243 giIlTKlD~~~~~G~-~lsi~~~~~~PI~fi~~Ge~i~dl~~f~p~~~~~~iLg~g 297 (428)
T TIGR00959 243 GVVLTKLDGDARGGA-ALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMG 297 (428)
T ss_pred EEEEeCccCcccccH-HHHHHHHHCcCEEEEeCCCChhhCccCCHHHHHHHHhCCC
Confidence 466665 443 55556679999999988765554344455555543 555
No 483
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=20.85 E-value=4.8e+02 Score=21.43 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=42.5
Q ss_pred HHHHHhhc--cEEEecCchHHHHHHHHh-----CCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---------eChHHH
Q 033044 29 IADHLSSA--SLVISHAGSGSIFETLRL-----GKPLIVVVNEDLMDNHQSELAEELADRKHLYC---------AHPQSL 92 (128)
Q Consensus 29 ~~~~~~~a--dlvIthaG~~Ti~E~l~~-----g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~---------~~~~~l 92 (128)
+..+++.. ++++-.+..+..+|+... |-.++++.+.. -=.+.++..++.|+-.. .+++++
T Consensus 47 L~~v~~t~~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~----FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v 122 (383)
T COG0075 47 LRKVFGTENGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGK----FGERFAEIAERYGAEVVVLEVEWGEAVDPEEV 122 (383)
T ss_pred HHHHhcCCCCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCh----HHHHHHHHHHHhCCceEEEeCCCCCCCCHHHH
Confidence 44445533 667666666777887754 33466665541 22478888888887643 278999
Q ss_pred HHHHHh
Q 033044 93 HQVIVG 98 (128)
Q Consensus 93 ~~~i~~ 98 (128)
.++|++
T Consensus 123 ~~~L~~ 128 (383)
T COG0075 123 EEALDK 128 (383)
T ss_pred HHHHhc
Confidence 998883
No 484
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=20.53 E-value=3.7e+02 Score=20.05 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHhCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe----ChHHHHHHHHhc
Q 033044 48 IFETLRLGKPLIVVVNEDLMDNHQSELAEELADRKHLYCA----HPQSLHQVIVGM 99 (128)
Q Consensus 48 i~E~l~~g~P~I~vP~~~~~~~~Q~~nA~~l~~~g~~~~~----~~~~l~~~i~~l 99 (128)
-.-|-++|+|.+.++.+...++......+.+.+.++-.++ ..+..+..++++
T Consensus 51 ~~qA~algipl~~~~~~g~~~~~~~~l~~~l~~~~v~~vv~GdI~~~~~r~~~e~v 106 (218)
T PF01902_consen 51 EAQAEALGIPLIEIPTSGDEEDYVEDLKEALKELKVEAVVFGDIDSEYQRNWVERV 106 (218)
T ss_dssp HHHHHHHT--EEEEEE---CCCHHHHHHHHHCTC--SEEE--TTS-HHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEEccCccchhhHHHHHHHHHcCCCEEEECcCCcHHHHHHHHHH
Confidence 3445689999999988744456667777778777743332 344444555444
No 485
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.46 E-value=2.8e+02 Score=19.19 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=25.1
Q ss_pred hhHHHHHh-hccEEEecCchHH--HHH-HHHhCCCEEEEeC
Q 033044 27 SSIADHLS-SASLVISHAGSGS--IFE-TLRLGKPLIVVVN 63 (128)
Q Consensus 27 ~~~~~~~~-~adlvIthaG~~T--i~E-~l~~g~P~I~vP~ 63 (128)
++++.+++ +-|+||+.++.+. +.+ .-..|+|++.++.
T Consensus 60 ~n~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 60 LNVELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCHHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 56666654 5689988665432 333 4488999999975
No 486
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=20.37 E-value=1.9e+02 Score=18.48 Aligned_cols=33 Identities=27% Similarity=0.208 Sum_probs=19.1
Q ss_pred HHHHhhccEEEecCchHHHHHHHHhCCC---EEEEeC
Q 033044 30 ADHLSSASLVISHAGSGSIFETLRLGKP---LIVVVN 63 (128)
Q Consensus 30 ~~~~~~adlvIthaG~~Ti~E~l~~g~P---~I~vP~ 63 (128)
...++.||.+|+.+-. +.-....+|.| +.+||+
T Consensus 124 ~~~~~~ad~vi~~S~~-~~~~l~~~g~~~~ri~vipn 159 (160)
T PF13579_consen 124 RRLLRRADRVIVVSEA-MRRYLRRYGVPPDRIHVIPN 159 (160)
T ss_dssp HHHHHH-SEEEESSHH-HHHHHHHH---GGGEEE---
T ss_pred HHHHhcCCEEEECCHH-HHHHHHHhCCCCCcEEEeCc
Confidence 4678899998888875 56666677776 566664
No 487
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=20.25 E-value=2.2e+02 Score=23.14 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=31.0
Q ss_pred cEEEEeChhh-----HHHHHhhcc----EEEecCchH------HHHHHHHhCCCEEEEe
Q 033044 19 AVDCFTFSSS-----IADHLSSAS----LVISHAGSG------SIFETLRLGKPLIVVV 62 (128)
Q Consensus 19 ~~~v~~f~~~-----~~~~~~~ad----lvIthaG~~------Ti~E~l~~g~P~I~vP 62 (128)
+++++...++ |++-++++. ++++++|.| .+.+|..-++|+|++.
T Consensus 38 ~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 38 RLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 3455555443 666666664 778887766 5668889999999993
No 488
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.24 E-value=58 Score=26.47 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=10.1
Q ss_pred HHhCCCEEEEeCC
Q 033044 52 LRLGKPLIVVVNE 64 (128)
Q Consensus 52 l~~g~P~I~vP~~ 64 (128)
...|+|+|++=+|
T Consensus 108 a~~g~~vvVLDRP 120 (365)
T PF07075_consen 108 AENGKPVVVLDRP 120 (365)
T ss_pred HHhCCeEEEEeCC
Confidence 4699999999444
No 489
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=20.05 E-value=4.5e+02 Score=22.05 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=24.8
Q ss_pred HHHHHhhc----cEEEecCchH------HHHHHHHhCCCEEEEe
Q 033044 29 IADHLSSA----SLVISHAGSG------SIFETLRLGKPLIVVV 62 (128)
Q Consensus 29 ~~~~~~~a----dlvIthaG~~------Ti~E~l~~g~P~I~vP 62 (128)
|++-++++ -++++|+|.| .+.+|..-+.|+|++.
T Consensus 55 mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~ 98 (554)
T TIGR03254 55 AAAAAGFLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMIS 98 (554)
T ss_pred HHHHHHHHhCCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEE
Confidence 55555544 3788887765 4678888999999994
No 490
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=20.05 E-value=1.1e+02 Score=20.51 Aligned_cols=28 Identities=21% Similarity=0.497 Sum_probs=21.2
Q ss_pred ccEEEEeChhhHHHHHhhccEEEecCchH
Q 033044 18 LAVDCFTFSSSIADHLSSASLVISHAGSG 46 (128)
Q Consensus 18 ~~~~v~~f~~~~~~~~~~adlvIthaG~~ 46 (128)
.++++..|.+ +.+.+..+|+||+-.+.+
T Consensus 59 ~~~~~~~~~~-~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 59 VNIEAIPLED-LEEALQEADIVINATPSG 86 (135)
T ss_dssp CSEEEEEGGG-HCHHHHTESEEEE-SSTT
T ss_pred cccceeeHHH-HHHHHhhCCeEEEecCCC
Confidence 3567777754 678999999999987765
No 491
>PRK03202 6-phosphofructokinase; Provisional
Probab=20.04 E-value=1.7e+02 Score=23.26 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=23.3
Q ss_pred ccEEEecCchHHHHHHHH---hCCCEEEEeCC
Q 033044 36 ASLVISHAGSGSIFETLR---LGKPLIVVVNE 64 (128)
Q Consensus 36 adlvIthaG~~Ti~E~l~---~g~P~I~vP~~ 64 (128)
-|.+|.=||-+|+.-+.. +++|+|.||-.
T Consensus 94 Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkT 125 (320)
T PRK03202 94 IDALVVIGGDGSYMGAKRLTEHGIPVIGLPGT 125 (320)
T ss_pred CCEEEEeCChHHHHHHHHHHhcCCcEEEeccc
Confidence 368888899888876655 59999999975
No 492
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=20.03 E-value=1.6e+02 Score=22.18 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=25.8
Q ss_pred hccEEEecCchHHHHHHHHhCCCEEEEeCC
Q 033044 35 SASLVISHAGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 35 ~adlvIthaG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
+.|+|||=.-..+..-+-..|+|.|++-..
T Consensus 94 ~pDlVIsD~~~~~~~aa~~~giP~i~i~~~ 123 (318)
T PF13528_consen 94 RPDLVISDFYPLAALAARRAGIPVIVISNQ 123 (318)
T ss_pred CCCEEEEcChHHHHHHHHhcCCCEEEEEeh
Confidence 689999999888888888999999988553
No 493
>PRK06707 amidase; Provisional
Probab=20.03 E-value=1.3e+02 Score=25.58 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=28.1
Q ss_pred hHHHHHh--hccEEEecCchHHHHHHHHhCCCEEEEeCC
Q 033044 28 SIADHLS--SASLVISHAGSGSIFETLRLGKPLIVVVNE 64 (128)
Q Consensus 28 ~~~~~~~--~adlvIthaG~~Ti~E~l~~g~P~I~vP~~ 64 (128)
.++++|. +.|++|+-....|. =+-..|.|.|.||..
T Consensus 458 ~~~~~~~~~~~Dall~p~~~~t~-~an~aG~PaitvP~G 495 (536)
T PRK06707 458 ELDRYLVEKGLDALVMINNEEVL-LSAVAGYPELAVPAG 495 (536)
T ss_pred HHHHHHhhCCCCEEEecCCCcch-hhHhcCCCeEEEecc
Confidence 4778888 89999997654443 356799999999985
Done!