BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033045
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
            Motor Domain
 pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
            Motor Domain
          Length = 2486

 Score = 31.2 bits (69), Expect = 0.18,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 15   PSQGLNLFSRNQCQR-HQVQQWRGIRVKVFNGNLEQALSWMQRKMQSSGIERLIK--REQ 71
            PS  + +F R++ +  H V     I  ++F+  L +  + MQRK      E LIK   E 
Sbjct: 1895 PSGDIPIFLRSRVRLVHFVTNKESIETRIFDITLTEENAEMQRKR-----EDLIKLNTEY 1949

Query: 72   RHHIKNSEKRVLARKN 87
            R  +KN EKR+L   N
Sbjct: 1950 RLKLKNLEKRLLEELN 1965


>pdb|3FTO|A Chain A, Crystal Structure Of Oppa In A Open Conformation
          Length = 590

 Score = 29.3 bits (64), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 29  RHQVQQWR--GIRVKVFNGNLEQALSWMQRKMQSSG 62
           ++ +QQW+  G++V ++NG L +  SW+       G
Sbjct: 427 QNYIQQWKKIGVKVSLYNGKLXEFNSWVDHXTTPPG 462


>pdb|3DRF|A Chain A, Lactococcal Oppa Complexed With An Endogenous Peptide In
           The Closed Conformation
 pdb|3DRG|A Chain A, Lactococcal Oppa Complexed With Bradykinin In The Closed
           Conformation
 pdb|3DRH|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
           Leu- Enkephalin In An Open Conformation
 pdb|3DRI|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
           An Octamer Peptide In An Open Conformation
 pdb|3DRJ|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
           Pth-Related Peptide In An Open Conformation
 pdb|3DRK|A Chain A, Crystal Structure Of Lactococcal Oppa Co-Crystallized With
           Neuropeptide S In An Open Conformation
 pdb|3RYA|A Chain A, Lactococcal Oppa Complexed With Slsqlssqs
 pdb|3RYB|A Chain A, Lactococcal Oppa Complexed With Slsqslsqs
          Length = 590

 Score = 28.5 bits (62), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 29  RHQVQQWR--GIRVKVFNGNLEQALSWMQRKMQSSG 62
           ++ +QQW+  G++V ++NG L +  SW+       G
Sbjct: 427 QNYIQQWKKIGVKVSLYNGKLMEFNSWVDHMTTPPG 462


>pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4
          Length = 540

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 66  LIKREQRHHIKNSEK---RVLARKNLERKIRSQDLARKLKAILVKKVR 110
           LI  ++ H++  ++K   R ++RK LER ++  ++  +L  I  KKV+
Sbjct: 178 LIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVK 225


>pdb|2RIG|A Chain A, Crystal Structure Of Recombinant Rabbit Interferon-Gamma
           At 2.7-Angstroms Resolution
          Length = 144

 Score = 26.6 bits (57), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 37  GIRVKVFNGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQD 96
            I VK FN NL + +   Q   + S  +RL++R+    + N    +  + NL+++ RSQ 
Sbjct: 76  DIFVKFFNSNLTK-MDDFQNLTRISVDDRLVQRKAVSELSNVLNFLSPKSNLKKRKRSQT 134

Query: 97  LAR 99
           L R
Sbjct: 135 LFR 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.135    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,256,485
Number of Sequences: 62578
Number of extensions: 106755
Number of successful extensions: 315
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 9
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)