Query 033045
Match_columns 128
No_of_seqs 68 out of 70
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 14:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8n_U 30S ribosomal protein S 99.5 6.5E-17 2.2E-21 104.5 -3.7 45 40-85 1-46 (51)
2 3i1m_U 30S ribosomal protein S 99.5 3.7E-17 1.3E-21 111.7 -8.0 55 39-96 3-58 (71)
3 3bbn_U Ribosomal protein S21; 99.4 2.7E-15 9.1E-20 118.8 -8.1 56 38-94 97-153 (190)
4 2cp9_A EF-TS, EF-TSMT, elongat 72.3 2.4 8.2E-05 28.0 2.4 20 43-62 34-53 (64)
5 1xb2_B EF-TS, elongation facto 70.5 4.2 0.00014 33.1 4.0 27 43-69 29-55 (291)
6 2ctk_A Vigilin; K homology typ 43.5 39 0.0013 22.8 4.5 48 31-78 41-102 (104)
7 1wgn_A UBAP1, ubiquitin associ 40.9 13 0.00043 25.0 1.7 13 42-54 42-54 (63)
8 3mah_A Aspartokinase; aspartat 40.4 16 0.00055 25.5 2.3 25 35-59 126-150 (157)
9 1aip_C EF-TS, elongation facto 39.5 15 0.00052 28.6 2.2 15 43-57 28-42 (196)
10 1z96_A DNA-damage, UBA-domain 38.1 17 0.00057 20.0 1.7 12 43-54 28-39 (40)
11 3sjd_D Golgi to ER traffic pro 37.9 30 0.001 22.0 3.0 28 78-105 17-44 (46)
12 2knz_A Ubiquilin-4; cytoplasm, 34.4 19 0.00066 21.9 1.7 14 42-55 35-48 (53)
13 2bwb_A Ubiquitin-like protein 33.8 21 0.0007 21.4 1.7 13 42-54 31-43 (46)
14 2g3q_A Protein YBL047C; endocy 32.5 22 0.00077 20.3 1.7 12 43-54 28-39 (43)
15 2dt9_A Aspartokinase; protein- 32.1 18 0.00063 25.3 1.5 24 36-59 134-157 (167)
16 4go7_X Aspartokinase; transfer 31.7 11 0.00039 28.5 0.4 42 17-58 131-176 (200)
17 2dah_A Ubiquilin-3; UBA domain 31.3 23 0.00079 21.9 1.7 15 42-56 33-47 (54)
18 2jy5_A Ubiquilin-1; UBA, alter 31.2 24 0.00081 21.5 1.7 13 42-54 36-48 (52)
19 3s1t_A Aspartokinase; ACT doma 31.1 16 0.00053 26.7 1.0 27 35-61 134-160 (181)
20 1zhv_A Hypothetical protein AT 30.9 41 0.0014 24.3 3.2 18 40-57 104-121 (134)
21 3zs9_C Golgi to ER traffic pro 29.4 36 0.0012 20.8 2.3 29 77-105 6-34 (38)
22 2dna_A Unnamed protein product 27.6 28 0.00096 23.0 1.7 16 42-57 43-58 (67)
23 1wr1_B Ubiquitin-like protein 26.9 30 0.001 21.8 1.7 14 42-55 41-54 (58)
24 1ify_A HHR23A, UV excision rep 26.4 23 0.00078 21.2 1.0 13 42-54 31-43 (49)
25 2hfv_A Hypothetical protein RP 26.3 60 0.002 22.7 3.3 21 35-55 65-85 (97)
26 2dun_A POL MU, DNA polymerase 25.3 60 0.002 24.0 3.3 21 40-60 53-73 (133)
27 1wgl_A TOLL-interacting protei 24.9 35 0.0012 21.6 1.7 13 43-55 35-47 (59)
28 1vej_A Riken cDNA 4931431F19; 22.4 40 0.0014 22.4 1.7 14 42-55 53-66 (74)
29 1vg5_A RSGI RUH-014, rhomboid 21.2 44 0.0015 22.1 1.7 14 42-55 52-65 (73)
30 1wji_A Tudor domain containing 20.8 46 0.0016 21.0 1.7 14 42-55 32-45 (63)
31 2w2u_A Hypothetical P60 katani 20.8 1.8E+02 0.0063 18.9 5.4 48 44-98 32-80 (83)
32 2axy_A Poly(RC)-binding protei 20.5 84 0.0029 19.5 2.9 15 46-60 58-72 (73)
33 1q02_A Sequestosome 1; helical 20.1 19 0.00065 23.3 -0.3 28 21-55 21-48 (52)
No 1
>3r8n_U 30S ribosomal protein S21; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_U 3fih_U* 3j18_U* 2wwl_U 3oar_U 3oaq_U 3ofb_U 3ofa_U 3ofp_U 3ofx_U 3ofy_U 3ofo_U 3r8o_U 4a2i_U 4gd1_U 4gd2_U
Probab=99.55 E-value=6.5e-17 Score=104.49 Aligned_cols=45 Identities=22% Similarity=0.346 Sum_probs=40.9
Q ss_pred EEEecC-CHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCcHHHHHHH
Q 033045 40 VKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLAR 85 (128)
Q Consensus 40 V~VrDn-NvEqALrvLKrKMq~eGifRemK~r~~~yeKPSEKR~raR 85 (128)
|.|.|| |+|+||+.+|++++++||++|++.|+ |||||||+|.++.
T Consensus 1 v~V~enE~ie~AlrrfkR~~~k~Gi~~e~r~r~-~yeKPs~krkrk~ 46 (51)
T 3r8n_U 1 IKVRENEPFDVALRRFKRSCEKAGVLAEVRRRE-FYEKPTTERKRAK 46 (51)
T ss_dssp CEECCCSSCCCCCCTTGGGSSTTHHHHHHHSCC-CCSSHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHcchHHHHHHHH-hhcCHHHHHHHHH
Confidence 679999 99999999999999999999999995 9999999995443
No 2
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U 3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U 3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U 3ora_U ...
Probab=99.50 E-value=3.7e-17 Score=111.67 Aligned_cols=55 Identities=20% Similarity=0.281 Sum_probs=44.5
Q ss_pred EEEEecC-CHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHhhHH
Q 033045 39 RVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRSQD 96 (128)
Q Consensus 39 ~V~VrDn-NvEqALrvLKrKMq~eGifRemK~r~~~yeKPSEKR~raRk~~err~Rs~e 96 (128)
+|.|.|| |+|+||+.+|++++.+||++|++.|+ |||||||+|. ++..++..|..+
T Consensus 3 ~V~V~enE~ie~ALRrfKR~~~k~Gil~e~Rrr~-~yEKPs~kRk--rk~~~a~kR~~k 58 (71)
T 3i1m_U 3 VIKVRENEPFDVALRRFKRSCEKAGVLAEVRRRE-FYEKPTTERK--RAKASAVKRHAK 58 (71)
T ss_dssp -CEEECCSSCCSCCCTTTTSSSTHHHHTTSSSCC-CSSSHHHHHH--HHHHTSCC----
T ss_pred eeEeCCCCCHHHHHHHHHHHHHHccHHHHHHHHH-hccCHHHHHH--HHHHHHHHHHHH
Confidence 5899999 89999999999999999999999995 9999999995 555555555444
No 3
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.35 E-value=2.7e-15 Score=118.78 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=44.4
Q ss_pred eEEEEecC-CHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCcHHHHHHHHHHHHHHhh
Q 033045 38 IRVKVFNG-NLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKRVLARKNLERKIRS 94 (128)
Q Consensus 38 I~V~VrDn-NvEqALrvLKrKMq~eGifRemK~r~~~yeKPSEKR~raRk~~err~Rs 94 (128)
++|.|+|| ++|+|||.+||+++++||++|+|+|+ |||||||+|+++..++.+|.++
T Consensus 97 ~~V~VkeNE~iE~ALRRFKRkveKeGIlrElRrRr-~YEKPSeKRKRK~~eA~rR~rK 153 (190)
T 3bbn_U 97 VQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRR-FFENTQDVRKRKTREAAKRNRR 153 (190)
T ss_dssp CCCCCCCCSSCCCCCCSSSTTTTTTHHHHSSSSCC-CTTTTTTHHHHHHHHTTC----
T ss_pred cEEEecCCCCHHHHHHHHHHHHHHccHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHH
Confidence 45999987 68999999999999999999999995 9999999996554444444433
No 4
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=72.27 E-value=2.4 Score=27.99 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=16.9
Q ss_pred ecCCHHHHHHHHHHHHhhhh
Q 033045 43 FNGNLEQALSWMQRKMQSSG 62 (128)
Q Consensus 43 rDnNvEqALrvLKrKMq~eG 62 (128)
-|||+|+|+..|++|=+.+|
T Consensus 34 ~~GDi~~Ai~~Lr~kg~~~a 53 (64)
T 2cp9_A 34 CGGDLKQAEIWLHKEAQKEG 53 (64)
T ss_dssp HTSCHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHhHHHH
Confidence 47999999999998876654
No 5
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=70.49 E-value=4.2 Score=33.07 Aligned_cols=27 Identities=30% Similarity=0.606 Sum_probs=23.6
Q ss_pred ecCCHHHHHHHHHHHHhhhhHHHHHHH
Q 033045 43 FNGNLEQALSWMQRKMQSSGIERLIKR 69 (128)
Q Consensus 43 rDnNvEqALrvLKrKMq~eGifRemK~ 69 (128)
-|||+|+|+.+|++++|..|+-.--|+
T Consensus 29 ~~GD~ekAie~LR~~a~kkG~akAaKk 55 (291)
T 1xb2_B 29 CGGDLKQAESWLHKQAQKEGWSKAARL 55 (291)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhccHHHHHHh
Confidence 479999999999999999999866654
No 6
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=43.49 E-value=39 Score=22.78 Aligned_cols=48 Identities=13% Similarity=0.076 Sum_probs=28.3
Q ss_pred chhcccceEEEEecC--------------CHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCc
Q 033045 31 QVQQWRGIRVKVFNG--------------NLEQALSWMQRKMQSSGIERLIKREQRHHIKNS 78 (128)
Q Consensus 31 qvQq~rgI~V~VrDn--------------NvEqALrvLKrKMq~eGifRemK~r~~~yeKPS 78 (128)
++|...|..|.+-|+ ++++|...+...+..---..+-+.-+.|-..||
T Consensus 41 ~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e~~~~d~~~~~~~~~~~ 102 (104)
T 2ctk_A 41 KMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQAEQEDRALRSFKSGPS 102 (104)
T ss_dssp HHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCC
T ss_pred HHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhHHHhHHHHHhcceecccC
Confidence 355555665655554 489999888887766333333322234555777
No 7
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=40.88 E-value=13 Score=24.98 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=11.1
Q ss_pred EecCCHHHHHHHH
Q 033045 42 VFNGNLEQALSWM 54 (128)
Q Consensus 42 VrDnNvEqALrvL 54 (128)
-.|||||+|+..|
T Consensus 42 at~~NvErAaDWL 54 (63)
T 1wgn_A 42 KKGENIEQILDYL 54 (63)
T ss_dssp HHCSCHHHHHHHH
T ss_pred HcCCCHHHHHHHH
Confidence 4689999999876
No 8
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=40.39 E-value=16 Score=25.49 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=20.9
Q ss_pred ccceEEEEecCCHHHHHHHHHHHHh
Q 033045 35 WRGIRVKVFNGNLEQALSWMQRKMQ 59 (128)
Q Consensus 35 ~rgI~V~VrDnNvEqALrvLKrKMq 59 (128)
...|.+.|.+.|.++|++.|.+.+-
T Consensus 126 e~~is~vv~~~d~~~a~~~Lh~~f~ 150 (157)
T 3mah_A 126 NYNVSVLVKAEDKKKALIALSNKLF 150 (157)
T ss_dssp SSCEEEEEEGGGHHHHHHHHHHHHH
T ss_pred CCEEEEEEcHHHHHHHHHHHHHHHh
Confidence 3458899999999999999987653
No 9
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=39.52 E-value=15 Score=28.64 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=13.5
Q ss_pred ecCCHHHHHHHHHHH
Q 033045 43 FNGNLEQALSWMQRK 57 (128)
Q Consensus 43 rDnNvEqALrvLKrK 57 (128)
-|||+|+|+.+|++|
T Consensus 28 ~~GD~ekAie~LR~k 42 (196)
T 1aip_C 28 AGWDEEKAVQLLRER 42 (196)
T ss_dssp TTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHc
Confidence 479999999999986
No 10
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=38.11 E-value=17 Score=20.03 Aligned_cols=12 Identities=42% Similarity=0.703 Sum_probs=9.9
Q ss_pred ecCCHHHHHHHH
Q 033045 43 FNGNLEQALSWM 54 (128)
Q Consensus 43 rDnNvEqALrvL 54 (128)
.+||+|.|+..|
T Consensus 28 ~~~n~e~A~~~L 39 (40)
T 1z96_A 28 ANGDLDVAASFL 39 (40)
T ss_dssp TTTCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 479999998765
No 11
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=37.92 E-value=30 Score=21.99 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 033045 78 SEKRVLARKNLERKIRSQDLARKLKAIL 105 (128)
Q Consensus 78 SEKR~raRk~~err~Rs~elarKLk~Il 105 (128)
+|++.+.|+.+++++++-.-+..|..|+
T Consensus 17 ~EkaRLrRERR~aKi~~G~assRLNkIt 44 (46)
T 3sjd_D 17 AEKRRLLRERRQKKFSNGGASSRLNKIT 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHh
Confidence 4666666666666666665666676664
No 12
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=34.44 E-value=19 Score=21.90 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=11.4
Q ss_pred EecCCHHHHHHHHH
Q 033045 42 VFNGNLEQALSWMQ 55 (128)
Q Consensus 42 VrDnNvEqALrvLK 55 (128)
..+||+|.|+..|-
T Consensus 35 ~t~gnve~Ave~L~ 48 (53)
T 2knz_A 35 ATGGDINAAIERLL 48 (53)
T ss_dssp HHTSCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHH
Confidence 45799999998874
No 13
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=33.81 E-value=21 Score=21.42 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=10.6
Q ss_pred EecCCHHHHHHHH
Q 033045 42 VFNGNLEQALSWM 54 (128)
Q Consensus 42 VrDnNvEqALrvL 54 (128)
--+||+|.|+..|
T Consensus 31 ~~~gnv~~Ave~L 43 (46)
T 2bwb_A 31 RSGGSVQGALDSL 43 (46)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhCCCHHHHHHHH
Confidence 3579999999876
No 14
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=32.54 E-value=22 Score=20.27 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=10.3
Q ss_pred ecCCHHHHHHHH
Q 033045 43 FNGNLEQALSWM 54 (128)
Q Consensus 43 rDnNvEqALrvL 54 (128)
.|||+|.|+..|
T Consensus 28 ~~~n~e~A~~~L 39 (43)
T 2g3q_A 28 CNWDLEAATNFL 39 (43)
T ss_dssp HTSCHHHHHHHH
T ss_pred hCcCHHHHHHHH
Confidence 489999999876
No 15
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=32.08 E-value=18 Score=25.34 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=20.5
Q ss_pred cceEEEEecCCHHHHHHHHHHHHh
Q 033045 36 RGIRVKVFNGNLEQALSWMQRKMQ 59 (128)
Q Consensus 36 rgI~V~VrDnNvEqALrvLKrKMq 59 (128)
..|.+.|...|.|+|+++|.+..-
T Consensus 134 ~~is~vv~~~d~~~Av~~Lh~~f~ 157 (167)
T 2dt9_A 134 VRISVIIPAEYAEAALRAVHQAFE 157 (167)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHTC
T ss_pred CEEEEEEeHHHHHHHHHHHHHHHc
Confidence 367899999999999999987654
No 16
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=31.68 E-value=11 Score=28.52 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=29.0
Q ss_pred Ccccccccccccccchhc----ccceEEEEecCCHHHHHHHHHHHH
Q 033045 17 QGLNLFSRNQCQRHQVQQ----WRGIRVKVFNGNLEQALSWMQRKM 58 (128)
Q Consensus 17 ~~~~~~~~~~~~~~qvQq----~rgI~V~VrDnNvEqALrvLKrKM 58 (128)
-++..|+.++...=.++. ..-|.+.|.+.+.|+|+++|-+.-
T Consensus 131 Vaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~~~Av~aLH~~F 176 (200)
T 4go7_X 131 VTATFCEALAAVGVNIELISTSEIRISVLCRDTELDKAVVALHEAF 176 (200)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHHHHHHHHHHh
Confidence 344555555543333433 467889999999999999998653
No 17
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.32 E-value=23 Score=21.92 Aligned_cols=15 Identities=13% Similarity=0.404 Sum_probs=12.1
Q ss_pred EecCCHHHHHHHHHH
Q 033045 42 VFNGNLEQALSWMQR 56 (128)
Q Consensus 42 VrDnNvEqALrvLKr 56 (128)
-.+||||.|+..|-.
T Consensus 33 ~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 33 ATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHh
Confidence 457999999988754
No 18
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=31.22 E-value=24 Score=21.46 Aligned_cols=13 Identities=15% Similarity=0.442 Sum_probs=10.7
Q ss_pred EecCCHHHHHHHH
Q 033045 42 VFNGNLEQALSWM 54 (128)
Q Consensus 42 VrDnNvEqALrvL 54 (128)
..+||+|.|+..|
T Consensus 36 ~t~gn~e~A~e~L 48 (52)
T 2jy5_A 36 ATGGDINAAIERL 48 (52)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhCCCHHHHHHHH
Confidence 4578999999876
No 19
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=31.15 E-value=16 Score=26.67 Aligned_cols=27 Identities=15% Similarity=0.088 Sum_probs=22.5
Q ss_pred ccceEEEEecCCHHHHHHHHHHHHhhh
Q 033045 35 WRGIRVKVFNGNLEQALSWMQRKMQSS 61 (128)
Q Consensus 35 ~rgI~V~VrDnNvEqALrvLKrKMq~e 61 (128)
...|.+.|.+.+.|+|++.|-+.+--+
T Consensus 134 ei~Is~vV~~~d~~~Av~aLH~~f~l~ 160 (181)
T 3s1t_A 134 EIRISVLCRDTELDKAVVALHEAFGLG 160 (181)
T ss_dssp TTEEEEEEEGGGHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEeHHHHHHHHHHHHHHHcCC
Confidence 556889999999999999998876543
No 20
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=30.87 E-value=41 Score=24.26 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=16.4
Q ss_pred EEEecCCHHHHHHHHHHH
Q 033045 40 VKVFNGNLEQALSWMQRK 57 (128)
Q Consensus 40 V~VrDnNvEqALrvLKrK 57 (128)
|.|..++.|+|+.+|+..
T Consensus 104 IlVp~~~~~~Ai~aL~~~ 121 (134)
T 1zhv_A 104 LLVRSNDLEKTADLLANA 121 (134)
T ss_dssp EEEEGGGHHHHHHHHHHT
T ss_pred EEEeHHHHHHHHHHHHHc
Confidence 889999999999999864
No 21
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=29.41 E-value=36 Score=20.82 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 033045 77 NSEKRVLARKNLERKIRSQDLARKLKAIL 105 (128)
Q Consensus 77 PSEKR~raRk~~err~Rs~elarKLk~Il 105 (128)
++|++.+.|+.+++++..-.-...|..|+
T Consensus 6 ~~ekaRlrRERR~aKi~~Ggas~RLnkIt 34 (38)
T 3zs9_C 6 EAEKRRLLRERRQKKFSNGGASSRLNKIT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 46777777777777777666656777664
No 22
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.64 E-value=28 Score=22.97 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=12.8
Q ss_pred EecCCHHHHHHHHHHH
Q 033045 42 VFNGNLEQALSWMQRK 57 (128)
Q Consensus 42 VrDnNvEqALrvLKrK 57 (128)
.-+||||.|+..|-.-
T Consensus 43 at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 43 ATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HTTSCHHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHhC
Confidence 3579999999988654
No 23
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.93 E-value=30 Score=21.83 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=11.2
Q ss_pred EecCCHHHHHHHHH
Q 033045 42 VFNGNLEQALSWMQ 55 (128)
Q Consensus 42 VrDnNvEqALrvLK 55 (128)
--+||+|.|+..|-
T Consensus 41 ~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 41 RSGGSVQGALDSLL 54 (58)
T ss_dssp HHTSCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHH
Confidence 45799999998774
No 24
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.42 E-value=23 Score=21.25 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=10.8
Q ss_pred EecCCHHHHHHHH
Q 033045 42 VFNGNLEQALSWM 54 (128)
Q Consensus 42 VrDnNvEqALrvL 54 (128)
..+||+|+|+..|
T Consensus 31 ~~~~n~e~A~e~L 43 (49)
T 1ify_A 31 ASYNNPHRAVEYL 43 (49)
T ss_dssp TTTSCSHHHHHHH
T ss_pred HhCCCHHHHHHHH
Confidence 4679999999877
No 25
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=26.26 E-value=60 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=18.8
Q ss_pred ccceEEEEecCCHHHHHHHHH
Q 033045 35 WRGIRVKVFNGNLEQALSWMQ 55 (128)
Q Consensus 35 ~rgI~V~VrDnNvEqALrvLK 55 (128)
|-|..+.|.|.|.++|.++|.
T Consensus 65 ~~P~rwlV~eed~~~Ar~LL~ 85 (97)
T 2hfv_A 65 VIPRRVLVHEDDLAGARRLLT 85 (97)
T ss_dssp SSCEEEEEEGGGHHHHHHHHH
T ss_pred cCcEEEEEChhhHHHHHHHHH
Confidence 668889999999999999885
No 26
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=25.29 E-value=60 Score=23.97 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=17.3
Q ss_pred EEEecCCHHHHHHHHHHHHhh
Q 033045 40 VKVFNGNLEQALSWMQRKMQS 60 (128)
Q Consensus 40 V~VrDnNvEqALrvLKrKMq~ 60 (128)
|.|-|+|.|++++.|+++++.
T Consensus 53 VV~E~~s~~~~~~~L~~~~~~ 73 (133)
T 2dun_A 53 VVMEETSAEEAVSWQERRMAA 73 (133)
T ss_dssp EEESSCCHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhhcc
Confidence 455899999999999877754
No 27
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=24.87 E-value=35 Score=21.59 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=10.8
Q ss_pred ecCCHHHHHHHHH
Q 033045 43 FNGNLEQALSWMQ 55 (128)
Q Consensus 43 rDnNvEqALrvLK 55 (128)
-+||+|.|+..|=
T Consensus 35 ~~gdvd~aI~~LL 47 (59)
T 1wgl_A 35 QRGNKDAAINSLL 47 (59)
T ss_dssp TTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHH
Confidence 4799999998873
No 28
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.42 E-value=40 Score=22.41 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=11.0
Q ss_pred EecCCHHHHHHHHH
Q 033045 42 VFNGNLEQALSWMQ 55 (128)
Q Consensus 42 VrDnNvEqALrvLK 55 (128)
--+||||.|+..|-
T Consensus 53 ~t~Gnve~Ave~L~ 66 (74)
T 1vej_A 53 ATDGDIHAAIEMLL 66 (74)
T ss_dssp HTTSCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHH
Confidence 35799999998874
No 29
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.20 E-value=44 Score=22.05 Aligned_cols=14 Identities=14% Similarity=0.219 Sum_probs=11.3
Q ss_pred EecCCHHHHHHHHH
Q 033045 42 VFNGNLEQALSWMQ 55 (128)
Q Consensus 42 VrDnNvEqALrvLK 55 (128)
..+||+|+|+..|-
T Consensus 52 ~~~~nve~Ave~Ll 65 (73)
T 1vg5_A 52 AADDDLTVAVEILM 65 (73)
T ss_dssp HHTSCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHH
Confidence 46899999998773
No 30
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.85 E-value=46 Score=21.05 Aligned_cols=14 Identities=36% Similarity=0.285 Sum_probs=11.5
Q ss_pred EecCCHHHHHHHHH
Q 033045 42 VFNGNLEQALSWMQ 55 (128)
Q Consensus 42 VrDnNvEqALrvLK 55 (128)
..+||+|.|+..|-
T Consensus 32 ~~~~nve~A~e~L~ 45 (63)
T 1wji_A 32 DNGNNLEAALNVLL 45 (63)
T ss_dssp HTTSCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHH
Confidence 45799999998874
No 31
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=20.82 E-value=1.8e+02 Score=18.95 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHHhhhhHHHHHHHHHhhccCCcHHH-HHHHHHHHHHHhhHHHH
Q 033045 44 NGNLEQALSWMQRKMQSSGIERLIKREQRHHIKNSEKR-VLARKNLERKIRSQDLA 98 (128)
Q Consensus 44 DnNvEqALrvLKrKMq~eGifRemK~r~~~yeKPSEKR-~raRk~~err~Rs~ela 98 (128)
.||.++|+..-+ +||.-.++.-. ||+++..+ ....|-.|=..|.++|.
T Consensus 32 ~g~y~eAl~lY~-----~aie~l~~alk--~e~d~~~k~~ir~K~~eY~~RAE~LK 80 (83)
T 2w2u_A 32 EGNAEEAITNYK-----KAIEVLAQLVS--LYRDGSTAAIYEQMINEYKRRIEVLK 80 (83)
T ss_dssp TTCHHHHHHHHH-----HHHHHHHHHHH--HSTTSSTHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHH-----HHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888988765 67777777653 57655544 35555566666666553
No 32
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=20.53 E-value=84 Score=19.45 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHhh
Q 033045 46 NLEQALSWMQRKMQS 60 (128)
Q Consensus 46 NvEqALrvLKrKMq~ 60 (128)
++++|...+..+|..
T Consensus 58 ~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 58 AIFKAFAMIIDKLEE 72 (73)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 367788777777754
No 33
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=20.08 E-value=19 Score=23.30 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=20.9
Q ss_pred ccccccccccchhcccceEEEEecCCHHHHHHHHH
Q 033045 21 LFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQ 55 (128)
Q Consensus 21 ~~~~~~~~~~qvQq~rgI~V~VrDnNvEqALrvLK 55 (128)
+|+..+|-..++- .+.+||+.+||.+|+
T Consensus 21 GF~negGWLt~LL-------~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 21 GFSDEGGWLTRLL-------QTKNYDIGAALDTIQ 48 (52)
T ss_dssp TCCCTTSHHHHHH-------HHTTTCHHHHHHHHT
T ss_pred CCCccccHHHHHH-------HHccCCHHHHHHHhh
Confidence 5676777656654 466899999999885
Done!