Query 033045
Match_columns 128
No_of_seqs 68 out of 70
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 14:53:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033045.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033045hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1aipc1 a.5.2.2 (C:2-53) Elong 76.2 0.73 5.3E-05 28.1 2.2 15 43-57 27-41 (52)
2 d2j0wa3 d.58.18.10 (A:386-449) 72.8 1.3 9.2E-05 26.6 2.7 23 35-57 39-61 (64)
3 d1xb2b1 a.5.2.2 (B:56-111) Elo 71.9 1.8 0.00013 26.6 3.3 21 43-63 29-49 (56)
4 d1efub3 a.5.2.2 (B:1-54) Elong 71.1 1.2 8.4E-05 27.3 2.2 15 43-57 29-43 (54)
5 d2hmfa2 d.58.18.10 (A:404-470) 61.3 2 0.00015 25.9 1.9 46 12-57 12-63 (67)
6 d2daha1 a.5.2.1 (A:8-48) Ubiqu 50.7 4.3 0.00031 23.3 2.0 14 43-56 27-40 (41)
7 d1zhva2 d.58.18.8 (A:62-127) H 46.6 9 0.00066 23.5 3.2 17 40-56 44-60 (66)
8 d1udxa3 d.242.1.1 (A:341-416) 40.8 4.5 0.00033 25.2 1.1 28 43-70 28-55 (76)
9 d2hmfa3 d.58.18.10 (A:304-403) 39.5 11 0.00082 23.7 3.0 27 36-62 56-82 (100)
10 d1hw1a2 a.78.1.1 (A:79-230) Fa 39.1 7.8 0.00056 24.5 2.1 34 35-68 115-149 (152)
11 d1zvpa2 d.58.18.9 (A:68-131) H 33.1 9.4 0.00069 23.7 1.7 17 40-56 45-61 (64)
12 d1oqya1 a.5.2.1 (A:160-200) DN 30.6 4.1 0.0003 23.0 -0.4 12 43-54 28-39 (41)
13 d2pjua1 c.92.3.1 (A:11-196) Pr 30.4 17 0.0012 25.5 2.9 25 38-62 27-51 (186)
14 d1ptfa_ d.94.1.1 (A:) Histidin 29.8 23 0.0017 21.9 3.2 32 32-63 55-86 (87)
15 d1vg5a_ a.5.2.1 (A:) Rhomboid 27.8 13 0.00095 22.8 1.7 13 42-54 52-64 (73)
16 d2hpra_ d.94.1.1 (A:) Histidin 27.6 29 0.0021 21.5 3.4 32 32-63 54-85 (87)
17 d2f06a1 d.58.18.11 (A:71-141) 26.9 27 0.002 20.6 3.1 22 35-57 37-58 (71)
18 d1f7ca_ a.116.1.1 (A:) Graf {C 26.7 8.1 0.00059 25.7 0.6 19 47-65 11-30 (191)
19 d2b3tb1 e.38.1.1 (B:7-354) Pep 26.2 27 0.002 26.6 3.7 26 35-60 240-270 (344)
20 d2hfva1 d.58.5.5 (A:23-97) Hyp 26.1 22 0.0016 22.6 2.6 20 37-56 45-64 (75)
21 d2cdqa3 d.58.18.10 (A:420-494) 25.7 15 0.0011 22.3 1.7 23 36-58 41-63 (75)
22 d1ka5a_ d.94.1.1 (A:) Histidin 24.3 36 0.0026 21.1 3.4 32 32-63 55-86 (88)
23 d1xa6a1 a.116.1.1 (A:271-466) 24.0 7.2 0.00052 25.9 -0.1 19 47-65 22-41 (196)
24 d1wgna_ a.5.2.1 (A:) Ubiquitin 24.0 17 0.0013 21.8 1.7 13 42-54 42-54 (63)
25 d2dnaa1 a.5.2.1 (A:12-61) Ubiq 23.2 22 0.0016 21.0 2.0 15 42-56 32-46 (50)
26 d2bwba1 a.5.2.1 (A:328-371) DS 21.3 22 0.0016 20.4 1.7 12 43-54 30-41 (44)
27 d2k0bx1 a.5.2.1 (X:1-52) Seque 21.2 6.9 0.0005 23.9 -0.6 28 21-55 21-48 (52)
28 d1wjia_ a.5.2.1 (A:) Tudor dom 20.9 22 0.0016 21.0 1.7 16 43-58 33-48 (63)
No 1
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=76.19 E-value=0.73 Score=28.06 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=13.2
Q ss_pred ecCCHHHHHHHHHHH
Q 033045 43 FNGNLEQALSWMQRK 57 (128)
Q Consensus 43 rDnNvEqALrvLKrK 57 (128)
-+||+|+|+.+|+++
T Consensus 27 ~~gD~ekA~e~Lr~~ 41 (52)
T d1aipc1 27 AGWDEEKAVQLLRER 41 (52)
T ss_dssp TTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 479999999999865
No 2
>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}
Probab=72.80 E-value=1.3 Score=26.57 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=19.5
Q ss_pred ccceEEEEecCCHHHHHHHHHHH
Q 033045 35 WRGIRVKVFNGNLEQALSWMQRK 57 (128)
Q Consensus 35 ~rgI~V~VrDnNvEqALrvLKrK 57 (128)
...|.+.|.+.|+++|++.|.+.
T Consensus 39 e~~is~vV~~~d~~~Av~aLh~~ 61 (64)
T d2j0wa3 39 SHNLCFLVPGEDAEQVVQKLHSN 61 (64)
T ss_dssp TTEEEEEEEGGGHHHHHHHHHHH
T ss_pred ccEEEEEEcHHHHHHHHHHHHHH
Confidence 34678999999999999998764
No 3
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=71.85 E-value=1.8 Score=26.59 Aligned_cols=21 Identities=38% Similarity=0.756 Sum_probs=17.2
Q ss_pred ecCCHHHHHHHHHHHHhhhhH
Q 033045 43 FNGNLEQALSWMQRKMQSSGI 63 (128)
Q Consensus 43 rDnNvEqALrvLKrKMq~eGi 63 (128)
-+||+|+|+.+|++|=+..|.
T Consensus 29 ~~gD~ekA~e~LrkkG~a~a~ 49 (56)
T d1xb2b1 29 CGGDLKQAESWLHKQAQKEGW 49 (56)
T ss_dssp TTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 479999999999998665554
No 4
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=71.07 E-value=1.2 Score=27.31 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=13.3
Q ss_pred ecCCHHHHHHHHHHH
Q 033045 43 FNGNLEQALSWMQRK 57 (128)
Q Consensus 43 rDnNvEqALrvLKrK 57 (128)
-+||+|+|+.+|++|
T Consensus 29 ~~gD~ekA~e~Lr~k 43 (54)
T d1efub3 29 ANGDIELAIENMRKS 43 (54)
T ss_dssp TTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH
Confidence 479999999999876
No 5
>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=61.34 E-value=2 Score=25.90 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=28.7
Q ss_pred ccCCCCccccccccccc---ccchhc---ccceEEEEecCCHHHHHHHHHHH
Q 033045 12 LTQPSQGLNLFSRNQCQ---RHQVQQ---WRGIRVKVFNGNLEQALSWMQRK 57 (128)
Q Consensus 12 ~~~~~~~~~~~~~~~~~---~~qvQq---~rgI~V~VrDnNvEqALrvLKrK 57 (128)
...|+....+|+.++.. -.-+.| ...|.+.|.+.|.|+|++.|.+-
T Consensus 12 ~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~~~Av~~Lh~~ 63 (67)
T d2hmfa2 12 RGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEK 63 (67)
T ss_dssp TTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEEeHHHHHHHHHHHHHH
Confidence 33444444555555432 111233 24688999999999999998754
No 6
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.73 E-value=4.3 Score=23.28 Aligned_cols=14 Identities=14% Similarity=0.430 Sum_probs=12.0
Q ss_pred ecCCHHHHHHHHHH
Q 033045 43 FNGNLEQALSWMQR 56 (128)
Q Consensus 43 rDnNvEqALrvLKr 56 (128)
-+|||+.|+..|.+
T Consensus 27 t~Gdv~~Aie~Ll~ 40 (41)
T d2daha1 27 TGGDVDAAVEKLRQ 40 (41)
T ss_dssp HTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 47999999998864
No 7
>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=46.55 E-value=9 Score=23.46 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=15.8
Q ss_pred EEEecCCHHHHHHHHHH
Q 033045 40 VKVFNGNLEQALSWMQR 56 (128)
Q Consensus 40 V~VrDnNvEqALrvLKr 56 (128)
|.|+.+++++|+.+|++
T Consensus 44 ilVp~~~~~~A~~~L~~ 60 (66)
T d1zhva2 44 LLVRSNDLEKTADLLAN 60 (66)
T ss_dssp EEEEGGGHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHH
Confidence 89999999999999975
No 8
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=40.75 E-value=4.5 Score=25.19 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=24.0
Q ss_pred ecCCHHHHHHHHHHHHhhhhHHHHHHHH
Q 033045 43 FNGNLEQALSWMQRKMQSSGIERLIKRE 70 (128)
Q Consensus 43 rDnNvEqALrvLKrKMq~eGifRemK~r 70 (128)
.|-|-+.|+.-+.++|++.||..+|+..
T Consensus 28 t~~~~~e~~~~f~~~l~~~Gv~~~L~~~ 55 (76)
T d1udxa3 28 IKGDLMEAAGYLQEVFRRQGVEAALRAK 55 (76)
T ss_dssp EEECTGGGHHHHHHHHHHTTHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHCChHHHHHHc
Confidence 3556678999999999999999999865
No 9
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=39.46 E-value=11 Score=23.74 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=22.4
Q ss_pred cceEEEEecCCHHHHHHHHHHHHhhhh
Q 033045 36 RGIRVKVFNGNLEQALSWMQRKMQSSG 62 (128)
Q Consensus 36 rgI~V~VrDnNvEqALrvLKrKMq~eG 62 (128)
..|.+.|.+.++|+|+++|.+-...+|
T Consensus 56 ~~Isf~V~~~d~~~a~~~L~~~f~~~~ 82 (100)
T d2hmfa3 56 TNISLVVSEEDVDKALKALKREFGDFG 82 (100)
T ss_dssp CCEEEEECSTTHHHHHHHHHHHHCCC-
T ss_pred ceEEEEEeHHHHHHHHHHHHHHHHhhc
Confidence 368899999999999999998765544
No 10
>d1hw1a2 a.78.1.1 (A:79-230) Fatty acid responsive transcription factor FadR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=39.09 E-value=7.8 Score=24.46 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=25.6
Q ss_pred ccceEEEEecCCHHHHHHHHHHHHhhhh-HHHHHH
Q 033045 35 WRGIRVKVFNGNLEQALSWMQRKMQSSG-IERLIK 68 (128)
Q Consensus 35 ~rgI~V~VrDnNvEqALrvLKrKMq~eG-ifRemK 68 (128)
-+.|-=.+.+||.|.|-.+|++=|.++| ++.+|+
T Consensus 115 H~~Il~Ai~~~D~e~A~~~mr~Hi~~s~~~w~~l~ 149 (152)
T d1hw1a2 115 YHKLSALCSEGAHDQVYETVRRYGHESGEIWHRMQ 149 (152)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334345778999999999999999988 455554
No 11
>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=33.05 E-value=9.4 Score=23.71 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=15.4
Q ss_pred EEEecCCHHHHHHHHHH
Q 033045 40 VKVFNGNLEQALSWMQR 56 (128)
Q Consensus 40 V~VrDnNvEqALrvLKr 56 (128)
+.|..++.|+|+++|+.
T Consensus 45 ifVp~~~~~~Al~~L~~ 61 (64)
T d1zvpa2 45 IFVQKEKAQQALQALGE 61 (64)
T ss_dssp EEEEGGGHHHHHHHHTT
T ss_pred EEEchhhHHHHHHHHHH
Confidence 88999999999999963
No 12
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.59 E-value=4.1 Score=23.00 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=9.4
Q ss_pred ecCCHHHHHHHH
Q 033045 43 FNGNLEQALSWM 54 (128)
Q Consensus 43 rDnNvEqALrvL 54 (128)
.+||+|+|+..|
T Consensus 28 ~~~N~e~A~~~L 39 (41)
T d1oqya1 28 SYNNPHRAVEYL 39 (41)
T ss_dssp SCSSTTHHHHTT
T ss_pred hCCCHHHHHHHH
Confidence 479999998654
No 13
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=30.39 E-value=17 Score=25.48 Aligned_cols=25 Identities=12% Similarity=0.376 Sum_probs=22.4
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhhh
Q 033045 38 IRVKVFNGNLEQALSWMQRKMQSSG 62 (128)
Q Consensus 38 I~V~VrDnNvEqALrvLKrKMq~eG 62 (128)
..|.|.++++|.|+...++++..+|
T Consensus 27 ~~i~v~~~~~e~av~~~~~~~~~~~ 51 (186)
T d2pjua1 27 ANITPIQLGFEKAVTYIRKKLANER 51 (186)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTSC
T ss_pred ceEEeecCcHHHHHHHHHHHHHcCC
Confidence 5699999999999999999987665
No 14
>d1ptfa_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Enterococcus faecalis [TaxId: 1351]}
Probab=29.83 E-value=23 Score=21.87 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=27.6
Q ss_pred hhcccceEEEEecCCHHHHHHHHHHHHhhhhH
Q 033045 32 VQQWRGIRVKVFNGNLEQALSWMQRKMQSSGI 63 (128)
Q Consensus 32 vQq~rgI~V~VrDnNvEqALrvLKrKMq~eGi 63 (128)
+.+...|+|.+-.-|=++|+..|..=+++||+
T Consensus 55 ~~~G~~i~i~~~G~de~~Al~~l~~~l~~egl 86 (87)
T d1ptfa_ 55 VGQGSDVTITVDGADEAEGMAAIVETLQKEGL 86 (87)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 45677788999988999999999999999985
No 15
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.79 E-value=13 Score=22.83 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=11.0
Q ss_pred EecCCHHHHHHHH
Q 033045 42 VFNGNLEQALSWM 54 (128)
Q Consensus 42 VrDnNvEqALrvL 54 (128)
..+||||.|+.+|
T Consensus 52 ~~~~n~e~A~~~L 64 (73)
T d1vg5a_ 52 AADDDLTVAVEIL 64 (73)
T ss_dssp HHTSCHHHHHHHH
T ss_pred HhCCCHHHHHHHH
Confidence 3579999999887
No 16
>d2hpra_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Bacillus subtilis [TaxId: 1423]}
Probab=27.56 E-value=29 Score=21.50 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=27.3
Q ss_pred hhcccceEEEEecCCHHHHHHHHHHHHhhhhH
Q 033045 32 VQQWRGIRVKVFNGNLEQALSWMQRKMQSSGI 63 (128)
Q Consensus 32 vQq~rgI~V~VrDnNvEqALrvLKrKMq~eGi 63 (128)
+.+...|+|.+-..|=++|+..|+.=++++|+
T Consensus 54 ~~~G~~v~i~~~G~De~~A~~~l~~~l~~~g~ 85 (87)
T d2hpra_ 54 IAKGAEITISASGADENDALNALEETMKCEGL 85 (87)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEEEECcCHHHHHHHHHHHHHHcCC
Confidence 45677888999999999999999998888774
No 17
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=26.86 E-value=27 Score=20.63 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=16.8
Q ss_pred ccceEEEEecCCHHHHHHHHHHH
Q 033045 35 WRGIRVKVFNGNLEQALSWMQRK 57 (128)
Q Consensus 35 ~rgI~V~VrDnNvEqALrvLKrK 57 (128)
.+++-|...| |.|+|..+|+.+
T Consensus 37 ~~~~~vl~vd-d~~~a~~~L~~~ 58 (71)
T d2f06a1 37 NVANVVIRPS-NMDKCIEVLKEK 58 (71)
T ss_dssp TEEEEEEEES-CHHHHHHHHHHT
T ss_pred CcEEEEEEEC-CHHHHHHHHHHC
Confidence 3567676665 899999999864
No 18
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.68 E-value=8.1 Score=25.71 Aligned_cols=19 Identities=11% Similarity=0.454 Sum_probs=16.5
Q ss_pred HHHHHHHHHHH-HhhhhHHH
Q 033045 47 LEQALSWMQRK-MQSSGIER 65 (128)
Q Consensus 47 vEqALrvLKrK-Mq~eGifR 65 (128)
|++++..|+++ +..|||||
T Consensus 11 v~~ci~~l~~~gl~~eGIFR 30 (191)
T d1f7ca_ 11 IKKCIHAVETRGINEQGLYR 30 (191)
T ss_dssp HHHHHHHHHHHCTTCTTTTT
T ss_pred HHHHHHHHHHhCCCCCCeee
Confidence 67888999888 88999996
No 19
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=26.20 E-value=27 Score=26.63 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.2
Q ss_pred ccceEEEEecC-----CHHHHHHHHHHHHhh
Q 033045 35 WRGIRVKVFNG-----NLEQALSWMQRKMQS 60 (128)
Q Consensus 35 ~rgI~V~VrDn-----NvEqALrvLKrKMq~ 60 (128)
.+||.|.+-|. |-+.|+++|+-|+-.
T Consensus 240 ptGi~v~~q~eRSq~~Nk~~A~~~L~~kl~~ 270 (344)
T d2b3tb1 240 PTGIVVECQDERSQHKNKAKALSVLGARIHA 270 (344)
T ss_dssp TTCCEEEEEESSCHHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEccCCCcchHHHHHHHHHHHHHHHH
Confidence 67899999886 899999999998743
No 20
>d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=26.08 E-value=22 Score=22.60 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=17.5
Q ss_pred ceEEEEecCCHHHHHHHHHH
Q 033045 37 GIRVKVFNGNLEQALSWMQR 56 (128)
Q Consensus 37 gI~V~VrDnNvEqALrvLKr 56 (128)
|-++.|.|.++++|-++|..
T Consensus 45 PRRimV~~~d~~~Ar~lL~d 64 (75)
T d2hfva1 45 PRRVLVHEDDLAGARRLLTD 64 (75)
T ss_dssp CEEEEEEGGGHHHHHHHHHH
T ss_pred eEEEEEcHhHHHHHHHHHHH
Confidence 57899999999999998863
No 21
>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.71 E-value=15 Score=22.26 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.2
Q ss_pred cceEEEEecCCHHHHHHHHHHHH
Q 033045 36 RGIRVKVFNGNLEQALSWMQRKM 58 (128)
Q Consensus 36 rgI~V~VrDnNvEqALrvLKrKM 58 (128)
..|.+.|.+.|.++|+++|-..+
T Consensus 41 ~~Is~vV~~~d~~~Av~~Lh~~f 63 (75)
T d2cdqa3 41 VNISFIVNEAEAEGCVQALHKSF 63 (75)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeHHHHHHHHHHHHHHH
Confidence 56889999999999999997655
No 22
>d1ka5a_ d.94.1.1 (A:) Histidine-containing phosphocarrier protein (HPr) {Staphylococcus aureus [TaxId: 1280]}
Probab=24.29 E-value=36 Score=21.07 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=27.7
Q ss_pred hhcccceEEEEecCCHHHHHHHHHHHHhhhhH
Q 033045 32 VQQWRGIRVKVFNGNLEQALSWMQRKMQSSGI 63 (128)
Q Consensus 32 vQq~rgI~V~VrDnNvEqALrvLKrKMq~eGi 63 (128)
+.+...|.|.+-..|=++|+..|..=+.++|+
T Consensus 55 ~~~G~~v~i~~~G~de~~Al~~l~~~l~~egl 86 (88)
T d1ka5a_ 55 VGKDAEITIYADGSDESDAIQAISDVLSKEGL 86 (88)
T ss_dssp CCTTCEEEEEEESSSHHHHHHHHHHHHHHHTS
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHhcCC
Confidence 56677888999999999999999998888885
No 23
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.04 E-value=7.2 Score=25.94 Aligned_cols=19 Identities=16% Similarity=0.454 Sum_probs=16.6
Q ss_pred HHHHHHHHHHH-HhhhhHHH
Q 033045 47 LEQALSWMQRK-MQSSGIER 65 (128)
Q Consensus 47 vEqALrvLKrK-Mq~eGifR 65 (128)
|++.+..|.++ +..|||||
T Consensus 22 v~~~i~~l~~~gl~~eGiFR 41 (196)
T d1xa6a1 22 VDICIREIEARGLKSEGLYR 41 (196)
T ss_dssp HHHHHHHHHHSCSSSTTTTT
T ss_pred HHHHHHHHHHhCCCCCCeee
Confidence 68899999888 89999995
No 24
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.03 E-value=17 Score=21.76 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=11.0
Q ss_pred EecCCHHHHHHHH
Q 033045 42 VFNGNLEQALSWM 54 (128)
Q Consensus 42 VrDnNvEqALrvL 54 (128)
..+||+|.|+.+|
T Consensus 42 ~~~~n~e~A~~~L 54 (63)
T d1wgna_ 42 KKGENIEQILDYL 54 (63)
T ss_dssp HHCSCHHHHHHHH
T ss_pred HcCCCHHHHHHHH
Confidence 3689999999887
No 25
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.19 E-value=22 Score=21.00 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=12.1
Q ss_pred EecCCHHHHHHHHHH
Q 033045 42 VFNGNLEQALSWMQR 56 (128)
Q Consensus 42 VrDnNvEqALrvLKr 56 (128)
-.+|||+.|+..|..
T Consensus 32 ~t~GdV~~Aie~Ll~ 46 (50)
T d2dnaa1 32 ATDGDTNAAIYKLKS 46 (50)
T ss_dssp HTTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHh
Confidence 357999999998863
No 26
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.34 E-value=22 Score=20.42 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=10.2
Q ss_pred ecCCHHHHHHHH
Q 033045 43 FNGNLEQALSWM 54 (128)
Q Consensus 43 rDnNvEqALrvL 54 (128)
.+|||+.|+..|
T Consensus 30 t~GdV~~Aie~L 41 (44)
T d2bwba1 30 SGGSVQGALDSL 41 (44)
T ss_dssp HTTCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 479999999876
No 27
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.22 E-value=6.9 Score=23.91 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=22.4
Q ss_pred ccccccccccchhcccceEEEEecCCHHHHHHHHH
Q 033045 21 LFSRNQCQRHQVQQWRGIRVKVFNGNLEQALSWMQ 55 (128)
Q Consensus 21 ~~~~~~~~~~qvQq~rgI~V~VrDnNvEqALrvLK 55 (128)
+|+..+|-..|+- ...|+|+.+||.+|+
T Consensus 21 GFsneGGWLt~LL-------~skn~dI~~aLD~iq 48 (52)
T d2k0bx1 21 GFSDEGGWLTRLL-------QTKNYDIGAALDTIQ 48 (52)
T ss_dssp TCCCSSSCHHHHH-------HHTTSCHHHHHHHTT
T ss_pred CCCCcchHHHHHH-------HHcCCCHHHHHHHHh
Confidence 6788888888776 456899999998874
No 28
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.87 E-value=22 Score=20.99 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=12.4
Q ss_pred ecCCHHHHHHHHHHHH
Q 033045 43 FNGNLEQALSWMQRKM 58 (128)
Q Consensus 43 rDnNvEqALrvLKrKM 58 (128)
-+||||+|+..|=.-+
T Consensus 33 ~~~~~e~A~~wL~~~~ 48 (63)
T d1wjia_ 33 NGNNLEAALNVLLTSN 48 (63)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHCC
Confidence 3689999999886543
Done!