BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033046
         (128 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2O0Q|A Chain A, X-Ray Crystal Structure Of Protein Cc0527 From
          Caulobacter Crescentus. Northeast Structural Genomics
          Consortium Target Ccr55
          Length = 115

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 12 FVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQI 71
           +Y+I + +EW+  +  G   G  +D + G  HLS  +Q Q T   +F   + +L LL +
Sbjct: 3  LIYKILSRAEWDAAKAQGRFEGSAVDLADGFIHLSAGEQAQETAAKWF-RGQANLVLLAV 61

Query: 72 GAKKLGDGLIYELVDGLNSFPHFYGP 97
           A+ LG+ L +E   G   FPH Y P
Sbjct: 62 EAEPLGEDLKWEASRGGARFPHLYRP 87


>pdb|2JQN|A Chain A, Solution Nmr Structure Of Cc0527 From Caulobacter
          Crescentus. Northeast Structural Genomics Target Ccr55
          Length = 122

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 12 FVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQI 71
           +Y+I + +EW+  +  G   G  +D + G  HLS  +Q Q T   +F   + +L LL +
Sbjct: 3  LIYKILSRAEWDAAKAQGRFEGSAVDLADGFIHLSAGEQAQETAAKWF-RGQANLVLLAV 61

Query: 72 GAKKLGDGLIYELVDGLNSFPHFYGP 97
           A+ LG+ L +E   G   FPH Y P
Sbjct: 62 EAEPLGEDLKWEASRGGARFPHLYRP 87


>pdb|2O0P|A Chain A, X-Ray Crystal Structure Of Protein Cc0527 (V27m  L66M
          Double Mutant) From Caulobacter Crescentus. Northeast
          Structural Genomics Consortium Target Ccr55
          Length = 122

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)

Query: 12 FVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQI 71
           +Y+I + +EW+  +  G   G   D + G  HLS  +Q Q T   +F   + +L LL +
Sbjct: 3  LIYKILSRAEWDAAKAQGRFEGSAXDLADGFIHLSAGEQAQETAAKWF-RGQANLVLLAV 61

Query: 72 GAKKLGDGLIYELVDGLNSFPHFYGP 97
           A+  G+ L +E   G   FPH Y P
Sbjct: 62 EAEPXGEDLKWEASRGGARFPHLYRP 87


>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
 pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
          Length = 210

 Score = 31.6 bits (70), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 39  SSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFY 95
           S GC H   L    PT + F   +KE   LL+IGA   GD  +   + G+NS+P  +
Sbjct: 123 SPGCSHCHDL---APTWREF---AKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF 173


>pdb|3NQP|A Chain A, Crystal Structure Of A Susd Superfamily Protein (Bf1802)
           From Bacteroides Fragilis Nctc 9343 At 1.90 A Resolution
 pdb|3NQP|B Chain B, Crystal Structure Of A Susd Superfamily Protein (Bf1802)
           From Bacteroides Fragilis Nctc 9343 At 1.90 A Resolution
          Length = 514

 Score = 29.3 bits (64), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 15/37 (40%)

Query: 1   MAASAEEERGEFVYRISTASEWEELQKNGSTFGGELD 37
           +   A    G F Y + T S     Q NG  FG  LD
Sbjct: 272 LEGEATNSNGTFTYNVGTGSTKNRYQANGEVFGDALD 308


>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
          Length = 780

 Score = 27.7 bits (60), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 53  PTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFY 95
           PT + F   +KE   LL+IGA   GD  +   + G+NS+P  +
Sbjct: 153 PTWREF---AKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF 192


>pdb|2D9W|A Chain A, Solution Structure Of The Ph Domain Of Docking Protein 2
           From Human
          Length = 127

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 58  FFLNSKEDLYLLQIGAKKLGD 78
           FFL +KE LYLL   A + GD
Sbjct: 91  FFLETKERLYLLAAPAAERGD 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,967,167
Number of Sequences: 62578
Number of extensions: 159055
Number of successful extensions: 279
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 10
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)