BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033046
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NRT6|DJC10_XENLA DnaJ homolog subfamily C member 10 OS=Xenopus laevis GN=dnajc10
PE=2 SV=1
Length = 796
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 39 SSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFY 95
S GC H L PT + F +KE LL+IGA GD + G+NS+P+ Y
Sbjct: 156 SPGCSHCHDL---APTWRQF---AKEMDGLLRIGAVNCGDNRMLCRSQGINSYPNLY 206
>sp|Q8D283|GCP_WIGBR Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Wigglesworthia glossinidia brevipalpis GN=gcp PE=3
SV=1
Length = 340
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 2 AASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQNFFLN 61
AA + E+G ++++ + + S +GG + + S +HL +QP ++N F N
Sbjct: 15 AAIYDLEKGLIIHKVISQNNIH------SKYGGVVPEKSSKYHLK---NIQPLVENIFKN 65
Query: 62 SKEDLYLLQIGAKKLGDGLIYELVDG 87
S L + A G GL+ L+ G
Sbjct: 66 SNISLSKIDGIAYTAGPGLVGSLIIG 91
>sp|Q8IXB1|DJC10_HUMAN DnaJ homolog subfamily C member 10 OS=Homo sapiens GN=DNAJC10 PE=1
SV=2
Length = 793
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 39 SSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFY 95
S GC H L PT ++F +KE LL+IGA GD + + G+NS+P +
Sbjct: 155 SPGCSHCHDL---APTWRDF---AKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF 205
>sp|Q5R5L3|DJC10_PONAB DnaJ homolog subfamily C member 10 OS=Pongo abelii GN=DNAJC10 PE=2
SV=1
Length = 793
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 39 SSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFY 95
S GC H L PT ++F +KE LL+IGA GD + + G+NS+P +
Sbjct: 155 SPGCSHCHDL---APTWRDF---AKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF 205
>sp|A6VJ32|SYA_METM7 Alanine--tRNA ligase OS=Methanococcus maripaludis (strain C7 / ATCC
BAA-1331) GN=alaS PE=3 SV=1
Length = 892
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 49 DQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDV 108
DQ+ T++ FF KE ++ KK+G+ + YEL D + ++ + P ++
Sbjct: 760 DQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYELADKFEKYGNYEVLVEQVSGTPNEL 819
Query: 109 VTKADKLSLSD 119
++ AD L++ +
Sbjct: 820 MSIADNLAVGN 830
>sp|Q498R3|DJC10_RAT DnaJ homolog subfamily C member 10 OS=Rattus norvegicus GN=Dnajc10
PE=2 SV=2
Length = 793
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 39 SSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFY 95
S GC H L PT + F +KE LL+IGA GD + + G+NS+P +
Sbjct: 155 SPGCSHCHDL---APTWREF---AKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF 205
>sp|Q9DC23|DJC10_MOUSE DnaJ homolog subfamily C member 10 OS=Mus musculus GN=Dnajc10 PE=1
SV=2
Length = 793
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 39 SSGCFHLSKLDQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFY 95
S GC H L PT + F +KE LL+IGA GD + + G+NS+P +
Sbjct: 155 SPGCSHCHDL---APTWREF---AKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLF 205
>sp|P61710|SYA_METMP Alanine--tRNA ligase OS=Methanococcus maripaludis (strain S2 / LL)
GN=alaS PE=3 SV=1
Length = 892
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 49 DQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDV 108
DQ+ T++ FF KE ++ KK+G+ + YEL D + ++ + P ++
Sbjct: 760 DQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYELADKFENVGNYEVLVEQVSGTPNEL 819
Query: 109 VTKADKLSLSD 119
++ AD L++ +
Sbjct: 820 MSIADNLAVGN 830
>sp|Q0V9R4|CCD39_XENTR Coiled-coil domain-containing protein 39 OS=Xenopus tropicalis
GN=ccdc39 PE=2 SV=1
Length = 945
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MAASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKS 39
M EEE+ + Y + A E EELQ+ G G++ K+
Sbjct: 650 MPPEGEEEKSQAYYVVKAAQEKEELQRVGDDLDGKIRKA 688
>sp|O14201|MUG86_SCHPO Meiotically up-regulated gene 86 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug86 PE=1 SV=1
Length = 304
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 19 ASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQP--TLQNFF-----LNSKEDLYLL 69
AS WE +G+TFGG + S GCF LS P +QN + N LYL+
Sbjct: 139 ASMWE--MASGNTFGGAVFGSYGCFWLSYASIFIPWFNIQNSYDDPNDFNYAIGLYLI 194
>sp|E2R1I5|CCD39_CANFA Coiled-coil domain-containing protein 39 OS=Canis familiaris
GN=CCDC39 PE=3 SV=1
Length = 939
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 1 MAASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKS 39
+ EEE+ + Y I A E EELQ+ G + +++K+
Sbjct: 650 LPPEGEEEKTQAYYVIKAAQEKEELQREGDSLDAKINKA 688
>sp|Q9D5Y1|CCD39_MOUSE Coiled-coil domain-containing protein 39 OS=Mus musculus GN=Ccdc39
PE=2 SV=1
Length = 937
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 1 MAASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQ 56
+ EEE+ + Y I A E EELQ+ G + +++K+ ++ +Q TLQ
Sbjct: 650 LPPEGEEEKTQSYYVIKAAQEKEELQREGDSLDAKINKAE-----KEIYALQNTLQ 700
>sp|Q6GKC2|ARGC_STAAR N-acetyl-gamma-glutamyl-phosphate reductase OS=Staphylococcus
aureus (strain MRSA252) GN=argC PE=3 SV=2
Length = 343
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 2 AASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTL 55
A+A+++ +Y IS EW+ L NG+ +L + GCF + L + P +
Sbjct: 114 TAAAQDDLNHAIYSIS---EWQSLDNNGT----KLISNPGCFPTATLLALHPLI 160
>sp|A4FZA5|SYA_METM5 Alanine--tRNA ligase OS=Methanococcus maripaludis (strain C5 / ATCC
BAA-1333) GN=alaS PE=3 SV=1
Length = 892
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 49 DQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDV 108
DQ+ T++ FF KE ++ KK+G+ + YEL D + + P ++
Sbjct: 760 DQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYELADKFEKHGDYEVLVEQVSGTPNEL 819
Query: 109 VTKADKLSLSD 119
++ AD L++ +
Sbjct: 820 MSIADNLAIGN 830
>sp|A9A6Q2|SYA_METM6 Alanine--tRNA ligase OS=Methanococcus maripaludis (strain C6 / ATCC
BAA-1332) GN=alaS PE=3 SV=1
Length = 892
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 49 DQVQPTLQNFFLNSKEDLYLLQIGAKKLGDGLIYELVDGLNSFPHFYGPSRSFTPLPLDV 108
DQ+ T++ FF KE ++ KK+G+ + YEL D + + P ++
Sbjct: 760 DQLPKTVKRFFEEWKEQKKTIEELQKKVGELVKYELADKFEKVGDYEVLVEQVSGTPNEL 819
Query: 109 VTKADKLSLSD 119
++ AD L++ +
Sbjct: 820 MSIADNLAVGN 830
>sp|D3Z8K2|CCD39_RAT Coiled-coil domain-containing protein 39 OS=Rattus norvegicus
GN=Ccdc39 PE=3 SV=1
Length = 934
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 1 MAASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQ 56
+ EEE+ + Y I A E EELQ+ G + ++ K+ ++ +Q TLQ
Sbjct: 650 LPPEGEEEKTQSYYVIKAAQEKEELQREGDSLDAKISKAE-----KEIYALQNTLQ 700
>sp|Q8N1W1|ARG28_HUMAN Rho guanine nucleotide exchange factor 28 OS=Homo sapiens GN=ARHGEF28
PE=1 SV=3
Length = 1705
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 1 MAASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKSSGCFHLSKLDQVQPTLQN 57
+ +++EER ++ RI A E +K G T + DK ++K+ Q Q L N
Sbjct: 1168 IHTNSKEERNNWMRRIQQAVESCPEEKGGRTSESDEDKRKAEARVAKIQQCQEILTN 1224
>sp|Q9UFE4|CCD39_HUMAN Coiled-coil domain-containing protein 39 OS=Homo sapiens GN=CCDC39
PE=2 SV=3
Length = 941
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 1 MAASAEEERGEFVYRISTASEWEELQKNGSTFGGELDKS 39
+ EEE+ + Y I A E EELQ+ G +++K+
Sbjct: 650 LPPEGEEEKTQAYYVIKAAQEKEELQREGDCLDAKINKA 688
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,232,167
Number of Sequences: 539616
Number of extensions: 1987910
Number of successful extensions: 4268
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4257
Number of HSP's gapped (non-prelim): 21
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)